Multiple sequence alignment - TraesCS5B01G310800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G310800 chr5B 100.000 3106 0 0 1 3106 492781354 492784459 0.000000e+00 5736.0
1 TraesCS5B01G310800 chr5B 90.586 648 59 2 2401 3046 276897423 276898070 0.000000e+00 857.0
2 TraesCS5B01G310800 chr5B 89.697 660 65 3 2400 3056 445179620 445178961 0.000000e+00 839.0
3 TraesCS5B01G310800 chr5B 89.877 652 65 1 2406 3056 558705227 558705878 0.000000e+00 837.0
4 TraesCS5B01G310800 chr5B 87.356 609 70 4 1125 1730 493086739 493086135 0.000000e+00 691.0
5 TraesCS5B01G310800 chr5B 91.499 447 37 1 1122 1567 493140529 493140975 5.690000e-172 614.0
6 TraesCS5B01G310800 chr5B 88.081 344 35 4 1524 1867 82243115 82242778 1.340000e-108 403.0
7 TraesCS5B01G310800 chr5B 82.705 451 59 13 1524 1962 493086295 493085852 1.750000e-102 383.0
8 TraesCS5B01G310800 chr5B 83.636 165 24 2 1524 1688 492782922 492783083 5.360000e-33 152.0
9 TraesCS5B01G310800 chr5A 90.549 1640 104 32 668 2288 522082252 522083859 0.000000e+00 2122.0
10 TraesCS5B01G310800 chr5A 87.365 831 89 12 1124 1940 522223709 522224537 0.000000e+00 939.0
11 TraesCS5B01G310800 chr5A 92.584 445 33 0 1122 1566 522425215 522425659 9.390000e-180 640.0
12 TraesCS5B01G310800 chr5A 79.907 428 55 20 1766 2168 522425712 522426133 5.070000e-73 285.0
13 TraesCS5B01G310800 chr5A 85.455 165 21 1 1524 1688 522083167 522083328 5.330000e-38 169.0
14 TraesCS5B01G310800 chr5A 81.548 168 28 3 1783 1947 522357142 522356975 5.400000e-28 135.0
15 TraesCS5B01G310800 chr5D 91.344 1421 78 17 896 2308 410490556 410491939 0.000000e+00 1901.0
16 TraesCS5B01G310800 chr5D 86.380 859 95 13 1124 1962 410620309 410621165 0.000000e+00 918.0
17 TraesCS5B01G310800 chr5D 91.026 390 35 0 1172 1561 410539182 410539571 7.630000e-146 527.0
18 TraesCS5B01G310800 chr5D 79.753 405 54 17 1767 2148 410679774 410680173 5.110000e-68 268.0
19 TraesCS5B01G310800 chr5D 90.196 153 15 0 1578 1730 72210022 72210174 1.890000e-47 200.0
20 TraesCS5B01G310800 chr5D 87.879 165 17 2 1569 1730 410491190 410491354 1.140000e-44 191.0
21 TraesCS5B01G310800 chr5D 74.246 431 51 35 478 871 410490148 410490555 3.250000e-25 126.0
22 TraesCS5B01G310800 chr5D 89.552 67 3 2 2326 2392 410494293 410494355 7.140000e-12 82.4
23 TraesCS5B01G310800 chr7B 90.214 654 62 2 2404 3056 217303294 217303946 0.000000e+00 852.0
24 TraesCS5B01G310800 chr1B 89.985 659 64 2 2400 3056 330837801 330838459 0.000000e+00 850.0
25 TraesCS5B01G310800 chr1B 92.170 447 33 2 1122 1567 562433862 562433417 5.650000e-177 630.0
26 TraesCS5B01G310800 chr3B 90.402 646 59 3 2403 3045 825271087 825271732 0.000000e+00 846.0
27 TraesCS5B01G310800 chr6B 89.908 654 65 1 2404 3056 502012130 502012783 0.000000e+00 841.0
28 TraesCS5B01G310800 chr4B 89.893 653 65 1 2405 3056 330748827 330749479 0.000000e+00 839.0
29 TraesCS5B01G310800 chr2D 89.771 655 64 3 2404 3056 353317423 353318076 0.000000e+00 835.0
30 TraesCS5B01G310800 chr7D 100.000 28 0 0 311 338 596709149 596709122 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G310800 chr5B 492781354 492784459 3105 False 2944.0 5736 91.81800 1 3106 2 chr5B.!!$F4 3105
1 TraesCS5B01G310800 chr5B 276897423 276898070 647 False 857.0 857 90.58600 2401 3046 1 chr5B.!!$F1 645
2 TraesCS5B01G310800 chr5B 445178961 445179620 659 True 839.0 839 89.69700 2400 3056 1 chr5B.!!$R2 656
3 TraesCS5B01G310800 chr5B 558705227 558705878 651 False 837.0 837 89.87700 2406 3056 1 chr5B.!!$F3 650
4 TraesCS5B01G310800 chr5B 493085852 493086739 887 True 537.0 691 85.03050 1125 1962 2 chr5B.!!$R3 837
5 TraesCS5B01G310800 chr5A 522082252 522083859 1607 False 1145.5 2122 88.00200 668 2288 2 chr5A.!!$F2 1620
6 TraesCS5B01G310800 chr5A 522223709 522224537 828 False 939.0 939 87.36500 1124 1940 1 chr5A.!!$F1 816
7 TraesCS5B01G310800 chr5A 522425215 522426133 918 False 462.5 640 86.24550 1122 2168 2 chr5A.!!$F3 1046
8 TraesCS5B01G310800 chr5D 410620309 410621165 856 False 918.0 918 86.38000 1124 1962 1 chr5D.!!$F3 838
9 TraesCS5B01G310800 chr5D 410490148 410494355 4207 False 575.1 1901 85.75525 478 2392 4 chr5D.!!$F5 1914
10 TraesCS5B01G310800 chr7B 217303294 217303946 652 False 852.0 852 90.21400 2404 3056 1 chr7B.!!$F1 652
11 TraesCS5B01G310800 chr1B 330837801 330838459 658 False 850.0 850 89.98500 2400 3056 1 chr1B.!!$F1 656
12 TraesCS5B01G310800 chr3B 825271087 825271732 645 False 846.0 846 90.40200 2403 3045 1 chr3B.!!$F1 642
13 TraesCS5B01G310800 chr6B 502012130 502012783 653 False 841.0 841 89.90800 2404 3056 1 chr6B.!!$F1 652
14 TraesCS5B01G310800 chr4B 330748827 330749479 652 False 839.0 839 89.89300 2405 3056 1 chr4B.!!$F1 651
15 TraesCS5B01G310800 chr2D 353317423 353318076 653 False 835.0 835 89.77100 2404 3056 1 chr2D.!!$F1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.026027 CGTAGTACTCTGTCGCGACC 59.974 60.0 34.34 18.7 0.00 4.79 F
306 307 0.032540 CAAAGTGAAGTTGGCTGGGC 59.967 55.0 0.00 0.0 0.00 5.36 F
535 536 0.033208 GCCCAAGATGGATGGTTGGA 60.033 55.0 1.82 0.0 43.01 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1171 1.464376 CGTGAGAGGTGTGGAGTGGT 61.464 60.000 0.00 0.0 0.00 4.16 R
1731 1853 1.478510 ACGCGACTGGAAGAATGATCT 59.521 47.619 15.93 0.0 37.43 2.75 R
2338 2686 0.246635 GACCGCTGGAGTTGCTCTTA 59.753 55.000 1.50 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.805231 CCCACGATGGCGCACGTA 62.805 66.667 21.42 1.18 40.76 3.57
18 19 3.254654 CCACGATGGCGCACGTAG 61.255 66.667 21.42 13.55 40.76 3.51
19 20 2.506217 CACGATGGCGCACGTAGT 60.506 61.111 21.42 10.95 41.63 2.73
20 21 1.226463 CACGATGGCGCACGTAGTA 60.226 57.895 21.42 0.00 39.87 1.82
21 22 1.226491 ACGATGGCGCACGTAGTAC 60.226 57.895 20.77 0.00 39.87 2.73
22 23 1.063649 CGATGGCGCACGTAGTACT 59.936 57.895 10.83 0.00 41.61 2.73
23 24 0.928908 CGATGGCGCACGTAGTACTC 60.929 60.000 10.83 0.00 41.61 2.59
24 25 0.381089 GATGGCGCACGTAGTACTCT 59.619 55.000 10.83 0.00 41.61 3.24
25 26 0.100682 ATGGCGCACGTAGTACTCTG 59.899 55.000 10.83 0.00 41.61 3.35
26 27 1.239296 TGGCGCACGTAGTACTCTGT 61.239 55.000 10.83 0.00 41.61 3.41
27 28 0.522915 GGCGCACGTAGTACTCTGTC 60.523 60.000 10.83 0.00 41.61 3.51
28 29 0.856490 GCGCACGTAGTACTCTGTCG 60.856 60.000 0.30 6.75 41.61 4.35
29 30 0.856490 CGCACGTAGTACTCTGTCGC 60.856 60.000 0.00 5.41 41.61 5.19
30 31 0.856490 GCACGTAGTACTCTGTCGCG 60.856 60.000 0.00 0.00 41.61 5.87
31 32 0.717784 CACGTAGTACTCTGTCGCGA 59.282 55.000 3.71 3.71 41.61 5.87
32 33 0.718343 ACGTAGTACTCTGTCGCGAC 59.282 55.000 31.66 31.66 41.94 5.19
33 34 0.026027 CGTAGTACTCTGTCGCGACC 59.974 60.000 34.34 18.70 0.00 4.79
34 35 0.376502 GTAGTACTCTGTCGCGACCC 59.623 60.000 34.34 13.47 0.00 4.46
35 36 0.036105 TAGTACTCTGTCGCGACCCA 60.036 55.000 34.34 20.33 0.00 4.51
36 37 1.136984 GTACTCTGTCGCGACCCAG 59.863 63.158 34.34 29.16 0.00 4.45
37 38 1.002990 TACTCTGTCGCGACCCAGA 60.003 57.895 34.34 28.12 36.35 3.86
38 39 0.607217 TACTCTGTCGCGACCCAGAA 60.607 55.000 34.34 16.01 37.27 3.02
39 40 1.153939 CTCTGTCGCGACCCAGAAG 60.154 63.158 34.34 24.25 37.27 2.85
40 41 1.867919 CTCTGTCGCGACCCAGAAGT 61.868 60.000 34.34 0.00 37.27 3.01
41 42 1.444553 CTGTCGCGACCCAGAAGTC 60.445 63.158 34.34 8.73 0.00 3.01
42 43 2.126031 GTCGCGACCCAGAAGTCC 60.126 66.667 28.61 0.00 32.91 3.85
43 44 3.379445 TCGCGACCCAGAAGTCCC 61.379 66.667 3.71 0.00 32.91 4.46
44 45 3.691342 CGCGACCCAGAAGTCCCA 61.691 66.667 0.00 0.00 32.91 4.37
45 46 2.266055 GCGACCCAGAAGTCCCAG 59.734 66.667 0.00 0.00 32.91 4.45
46 47 2.584391 GCGACCCAGAAGTCCCAGT 61.584 63.158 0.00 0.00 32.91 4.00
47 48 2.058675 CGACCCAGAAGTCCCAGTT 58.941 57.895 0.00 0.00 32.91 3.16
48 49 0.037232 CGACCCAGAAGTCCCAGTTC 60.037 60.000 0.00 0.00 32.91 3.01
49 50 0.037232 GACCCAGAAGTCCCAGTTCG 60.037 60.000 0.00 0.00 32.91 3.95
50 51 1.296715 CCCAGAAGTCCCAGTTCGG 59.703 63.158 0.00 0.00 32.91 4.30
67 68 4.944372 GGGACTCCGGCGCGTATG 62.944 72.222 8.43 0.00 0.00 2.39
68 69 4.203076 GGACTCCGGCGCGTATGT 62.203 66.667 8.43 0.00 0.00 2.29
69 70 2.954868 GACTCCGGCGCGTATGTG 60.955 66.667 8.43 0.00 0.00 3.21
70 71 4.508128 ACTCCGGCGCGTATGTGG 62.508 66.667 8.43 2.75 0.00 4.17
78 79 4.807039 GCGTATGTGGGGTCGCGT 62.807 66.667 5.77 0.00 39.35 6.01
79 80 2.581409 CGTATGTGGGGTCGCGTC 60.581 66.667 5.77 0.00 0.00 5.19
80 81 2.581409 GTATGTGGGGTCGCGTCG 60.581 66.667 5.77 0.00 0.00 5.12
81 82 3.063704 TATGTGGGGTCGCGTCGT 61.064 61.111 5.77 0.00 0.00 4.34
82 83 2.638354 TATGTGGGGTCGCGTCGTT 61.638 57.895 5.77 0.00 0.00 3.85
83 84 2.822418 TATGTGGGGTCGCGTCGTTG 62.822 60.000 5.77 0.00 0.00 4.10
95 96 2.868196 TCGTTGCTCCGACGAGAG 59.132 61.111 3.74 2.53 44.04 3.20
96 97 1.670083 TCGTTGCTCCGACGAGAGA 60.670 57.895 14.93 0.00 44.04 3.10
97 98 1.209383 CGTTGCTCCGACGAGAGAA 59.791 57.895 14.93 4.17 43.17 2.87
98 99 0.794981 CGTTGCTCCGACGAGAGAAG 60.795 60.000 14.93 0.00 43.17 2.85
99 100 0.456995 GTTGCTCCGACGAGAGAAGG 60.457 60.000 14.93 0.00 38.52 3.46
100 101 1.595993 TTGCTCCGACGAGAGAAGGG 61.596 60.000 14.93 0.00 38.52 3.95
101 102 2.802106 CTCCGACGAGAGAAGGGC 59.198 66.667 0.00 0.00 38.52 5.19
102 103 2.035155 TCCGACGAGAGAAGGGCA 59.965 61.111 0.00 0.00 33.43 5.36
103 104 2.182030 CCGACGAGAGAAGGGCAC 59.818 66.667 0.00 0.00 0.00 5.01
104 105 2.202492 CGACGAGAGAAGGGCACG 60.202 66.667 0.00 0.00 0.00 5.34
105 106 2.182030 GACGAGAGAAGGGCACGG 59.818 66.667 0.00 0.00 0.00 4.94
106 107 2.600769 ACGAGAGAAGGGCACGGT 60.601 61.111 0.00 0.00 0.00 4.83
107 108 2.125912 CGAGAGAAGGGCACGGTG 60.126 66.667 3.15 3.15 0.00 4.94
108 109 2.266055 GAGAGAAGGGCACGGTGG 59.734 66.667 10.60 0.00 0.00 4.61
109 110 2.526873 AGAGAAGGGCACGGTGGT 60.527 61.111 10.60 0.00 0.00 4.16
110 111 2.113243 GAGAGAAGGGCACGGTGGTT 62.113 60.000 10.60 0.00 0.00 3.67
111 112 1.966451 GAGAAGGGCACGGTGGTTG 60.966 63.158 10.60 0.00 0.00 3.77
112 113 3.670377 GAAGGGCACGGTGGTTGC 61.670 66.667 10.60 0.00 0.00 4.17
116 117 3.361977 GGCACGGTGGTTGCGAAT 61.362 61.111 10.60 0.00 0.00 3.34
117 118 2.175811 GCACGGTGGTTGCGAATC 59.824 61.111 10.60 0.00 0.00 2.52
118 119 2.325082 GCACGGTGGTTGCGAATCT 61.325 57.895 10.60 0.00 0.00 2.40
119 120 1.787847 CACGGTGGTTGCGAATCTC 59.212 57.895 0.00 0.00 0.00 2.75
120 121 1.375523 ACGGTGGTTGCGAATCTCC 60.376 57.895 0.00 0.00 0.00 3.71
121 122 1.375396 CGGTGGTTGCGAATCTCCA 60.375 57.895 0.00 0.00 0.00 3.86
122 123 1.361668 CGGTGGTTGCGAATCTCCAG 61.362 60.000 0.00 0.00 0.00 3.86
123 124 0.321653 GGTGGTTGCGAATCTCCAGT 60.322 55.000 0.00 0.00 0.00 4.00
124 125 0.798776 GTGGTTGCGAATCTCCAGTG 59.201 55.000 0.00 0.00 0.00 3.66
125 126 0.955428 TGGTTGCGAATCTCCAGTGC 60.955 55.000 0.00 0.00 0.00 4.40
126 127 0.674895 GGTTGCGAATCTCCAGTGCT 60.675 55.000 0.00 0.00 0.00 4.40
127 128 0.723981 GTTGCGAATCTCCAGTGCTC 59.276 55.000 0.00 0.00 0.00 4.26
128 129 0.737367 TTGCGAATCTCCAGTGCTCG 60.737 55.000 0.00 0.00 0.00 5.03
129 130 2.520904 GCGAATCTCCAGTGCTCGC 61.521 63.158 0.00 0.00 46.69 5.03
130 131 2.226896 CGAATCTCCAGTGCTCGCG 61.227 63.158 0.00 0.00 0.00 5.87
131 132 2.510238 AATCTCCAGTGCTCGCGC 60.510 61.111 0.00 0.00 0.00 6.86
132 133 4.862092 ATCTCCAGTGCTCGCGCG 62.862 66.667 26.76 26.76 39.65 6.86
146 147 4.764336 CGCGCTCGGACAACGGTA 62.764 66.667 5.56 0.00 44.45 4.02
147 148 2.202703 GCGCTCGGACAACGGTAT 60.203 61.111 0.00 0.00 44.45 2.73
148 149 2.514013 GCGCTCGGACAACGGTATG 61.514 63.158 0.00 0.00 44.45 2.39
149 150 1.876714 CGCTCGGACAACGGTATGG 60.877 63.158 0.00 0.00 44.45 2.74
150 151 2.171725 GCTCGGACAACGGTATGGC 61.172 63.158 0.00 0.00 44.45 4.40
151 152 1.520787 CTCGGACAACGGTATGGCC 60.521 63.158 0.00 0.00 45.74 5.36
160 161 2.828868 GGTATGGCCGGCATCAGA 59.171 61.111 30.85 12.84 0.00 3.27
161 162 1.148273 GGTATGGCCGGCATCAGAA 59.852 57.895 30.85 7.59 0.00 3.02
162 163 0.250901 GGTATGGCCGGCATCAGAAT 60.251 55.000 30.85 13.35 0.00 2.40
163 164 0.877071 GTATGGCCGGCATCAGAATG 59.123 55.000 30.85 0.00 35.87 2.67
176 177 2.607811 AGAATGCATCTGGGGTCGA 58.392 52.632 0.00 0.00 36.88 4.20
177 178 0.467384 AGAATGCATCTGGGGTCGAG 59.533 55.000 0.00 0.00 36.88 4.04
178 179 0.533755 GAATGCATCTGGGGTCGAGG 60.534 60.000 0.00 0.00 0.00 4.63
179 180 1.274703 AATGCATCTGGGGTCGAGGT 61.275 55.000 0.00 0.00 0.00 3.85
180 181 1.976132 ATGCATCTGGGGTCGAGGTG 61.976 60.000 0.00 0.00 0.00 4.00
181 182 2.187946 CATCTGGGGTCGAGGTGC 59.812 66.667 0.00 0.00 0.00 5.01
182 183 2.039624 ATCTGGGGTCGAGGTGCT 59.960 61.111 0.00 0.00 0.00 4.40
183 184 1.043116 CATCTGGGGTCGAGGTGCTA 61.043 60.000 0.00 0.00 0.00 3.49
184 185 0.757188 ATCTGGGGTCGAGGTGCTAG 60.757 60.000 0.00 0.00 0.00 3.42
185 186 3.075005 TGGGGTCGAGGTGCTAGC 61.075 66.667 8.10 8.10 0.00 3.42
186 187 3.851128 GGGGTCGAGGTGCTAGCC 61.851 72.222 13.29 3.27 0.00 3.93
187 188 4.208686 GGGTCGAGGTGCTAGCCG 62.209 72.222 13.29 8.58 0.00 5.52
188 189 3.450115 GGTCGAGGTGCTAGCCGT 61.450 66.667 13.29 5.16 0.00 5.68
189 190 2.202623 GTCGAGGTGCTAGCCGTG 60.203 66.667 13.29 0.00 0.00 4.94
190 191 4.129737 TCGAGGTGCTAGCCGTGC 62.130 66.667 13.29 0.00 0.00 5.34
197 198 4.452733 GCTAGCCGTGCGGGAGTT 62.453 66.667 12.82 0.00 38.47 3.01
198 199 2.264794 CTAGCCGTGCGGGAGTTT 59.735 61.111 12.82 0.00 38.47 2.66
199 200 1.375523 CTAGCCGTGCGGGAGTTTT 60.376 57.895 12.82 0.00 38.47 2.43
200 201 0.108520 CTAGCCGTGCGGGAGTTTTA 60.109 55.000 12.82 0.00 38.47 1.52
201 202 0.538118 TAGCCGTGCGGGAGTTTTAT 59.462 50.000 12.82 0.00 38.47 1.40
202 203 1.024579 AGCCGTGCGGGAGTTTTATG 61.025 55.000 12.82 0.00 38.47 1.90
203 204 1.303091 GCCGTGCGGGAGTTTTATGT 61.303 55.000 12.82 0.00 38.47 2.29
204 205 0.725117 CCGTGCGGGAGTTTTATGTC 59.275 55.000 2.15 0.00 38.47 3.06
205 206 0.725117 CGTGCGGGAGTTTTATGTCC 59.275 55.000 0.00 0.00 0.00 4.02
206 207 0.725117 GTGCGGGAGTTTTATGTCCG 59.275 55.000 0.00 0.00 43.13 4.79
207 208 0.391927 TGCGGGAGTTTTATGTCCGG 60.392 55.000 0.00 0.00 40.88 5.14
208 209 2.390427 CGGGAGTTTTATGTCCGGC 58.610 57.895 0.00 0.00 37.35 6.13
209 210 0.391927 CGGGAGTTTTATGTCCGGCA 60.392 55.000 0.00 0.00 37.35 5.69
210 211 1.092348 GGGAGTTTTATGTCCGGCAC 58.908 55.000 0.00 0.00 33.13 5.01
211 212 1.339727 GGGAGTTTTATGTCCGGCACT 60.340 52.381 0.00 0.00 33.13 4.40
212 213 2.007608 GGAGTTTTATGTCCGGCACTC 58.992 52.381 0.00 0.96 0.00 3.51
213 214 2.007608 GAGTTTTATGTCCGGCACTCC 58.992 52.381 0.00 0.00 0.00 3.85
214 215 1.092348 GTTTTATGTCCGGCACTCCC 58.908 55.000 0.00 0.00 0.00 4.30
215 216 0.693622 TTTTATGTCCGGCACTCCCA 59.306 50.000 0.00 0.00 0.00 4.37
216 217 0.251916 TTTATGTCCGGCACTCCCAG 59.748 55.000 0.00 0.00 0.00 4.45
217 218 0.907704 TTATGTCCGGCACTCCCAGT 60.908 55.000 0.00 0.00 0.00 4.00
219 220 4.394712 GTCCGGCACTCCCAGTGG 62.395 72.222 0.63 0.63 46.01 4.00
220 221 4.954118 TCCGGCACTCCCAGTGGT 62.954 66.667 8.74 0.00 46.01 4.16
221 222 3.000819 CCGGCACTCCCAGTGGTA 61.001 66.667 8.74 0.00 46.01 3.25
222 223 2.579201 CGGCACTCCCAGTGGTAG 59.421 66.667 8.74 3.90 46.01 3.18
223 224 2.283529 CGGCACTCCCAGTGGTAGT 61.284 63.158 8.74 4.70 46.01 2.73
224 225 1.296715 GGCACTCCCAGTGGTAGTG 59.703 63.158 26.31 26.31 46.01 2.74
226 227 2.057830 CACTCCCAGTGGTAGTGCA 58.942 57.895 20.61 0.00 42.35 4.57
227 228 0.320771 CACTCCCAGTGGTAGTGCAC 60.321 60.000 20.61 9.40 42.35 4.57
228 229 0.762842 ACTCCCAGTGGTAGTGCACA 60.763 55.000 21.04 1.84 0.00 4.57
229 230 0.320771 CTCCCAGTGGTAGTGCACAC 60.321 60.000 21.04 14.56 37.86 3.82
230 231 1.667830 CCCAGTGGTAGTGCACACG 60.668 63.158 21.04 5.04 42.25 4.49
231 232 1.667830 CCAGTGGTAGTGCACACGG 60.668 63.158 21.04 8.91 42.25 4.94
232 233 1.069090 CAGTGGTAGTGCACACGGT 59.931 57.895 21.04 0.00 42.25 4.83
233 234 1.069090 AGTGGTAGTGCACACGGTG 59.931 57.895 21.04 6.58 42.25 4.94
248 249 3.050703 GGTGCACCGAGATGTGTAG 57.949 57.895 22.49 0.00 38.52 2.74
249 250 1.084370 GGTGCACCGAGATGTGTAGC 61.084 60.000 22.49 0.00 40.96 3.58
250 251 1.084370 GTGCACCGAGATGTGTAGCC 61.084 60.000 5.22 0.00 38.52 3.93
251 252 1.218047 GCACCGAGATGTGTAGCCA 59.782 57.895 0.00 0.00 38.52 4.75
252 253 0.807667 GCACCGAGATGTGTAGCCAG 60.808 60.000 0.00 0.00 38.52 4.85
253 254 0.179100 CACCGAGATGTGTAGCCAGG 60.179 60.000 0.00 0.00 0.00 4.45
254 255 0.614979 ACCGAGATGTGTAGCCAGGT 60.615 55.000 0.00 0.00 0.00 4.00
255 256 0.179100 CCGAGATGTGTAGCCAGGTG 60.179 60.000 0.00 0.00 0.00 4.00
256 257 0.807667 CGAGATGTGTAGCCAGGTGC 60.808 60.000 0.00 0.00 41.71 5.01
305 306 0.675633 CCAAAGTGAAGTTGGCTGGG 59.324 55.000 0.00 0.00 39.21 4.45
306 307 0.032540 CAAAGTGAAGTTGGCTGGGC 59.967 55.000 0.00 0.00 0.00 5.36
307 308 1.455383 AAAGTGAAGTTGGCTGGGCG 61.455 55.000 0.00 0.00 0.00 6.13
308 309 3.365265 GTGAAGTTGGCTGGGCGG 61.365 66.667 0.00 0.00 0.00 6.13
329 330 4.899239 GATGAGCCGGCCTCGTGG 62.899 72.222 26.15 0.00 43.82 4.94
337 338 4.681978 GGCCTCGTGGTCGTGCTT 62.682 66.667 5.26 0.00 36.65 3.91
338 339 3.414700 GCCTCGTGGTCGTGCTTG 61.415 66.667 5.26 0.00 38.33 4.01
339 340 3.414700 CCTCGTGGTCGTGCTTGC 61.415 66.667 0.00 0.00 38.33 4.01
340 341 3.767230 CTCGTGGTCGTGCTTGCG 61.767 66.667 0.00 0.00 38.33 4.85
341 342 4.273257 TCGTGGTCGTGCTTGCGA 62.273 61.111 0.00 0.00 38.68 5.10
347 348 3.401095 TCGTGCTTGCGACGTTTT 58.599 50.000 13.73 0.00 38.04 2.43
348 349 1.716760 TCGTGCTTGCGACGTTTTT 59.283 47.368 13.73 0.00 38.04 1.94
365 366 3.441496 TTTTTGCCACAGCTGAAGAAG 57.559 42.857 23.35 4.80 40.80 2.85
382 383 3.589881 GCCCATGGCGATGACAGC 61.590 66.667 10.66 6.44 39.62 4.40
383 384 2.124612 CCCATGGCGATGACAGCA 60.125 61.111 10.66 0.00 36.08 4.41
384 385 1.750018 CCCATGGCGATGACAGCAA 60.750 57.895 10.66 0.00 36.08 3.91
385 386 1.721664 CCCATGGCGATGACAGCAAG 61.722 60.000 10.66 0.00 36.08 4.01
386 387 1.063649 CATGGCGATGACAGCAAGC 59.936 57.895 1.91 0.00 36.08 4.01
387 388 1.077930 ATGGCGATGACAGCAAGCT 60.078 52.632 0.00 0.00 36.08 3.74
388 389 0.178767 ATGGCGATGACAGCAAGCTA 59.821 50.000 0.00 0.00 36.08 3.32
389 390 0.460811 TGGCGATGACAGCAAGCTAG 60.461 55.000 0.00 0.00 36.08 3.42
390 391 1.156645 GGCGATGACAGCAAGCTAGG 61.157 60.000 0.00 0.00 36.08 3.02
391 392 1.156645 GCGATGACAGCAAGCTAGGG 61.157 60.000 0.00 0.00 34.19 3.53
392 393 0.176680 CGATGACAGCAAGCTAGGGT 59.823 55.000 0.00 0.00 0.00 4.34
393 394 1.406069 CGATGACAGCAAGCTAGGGTT 60.406 52.381 0.00 0.00 0.00 4.11
394 395 2.284190 GATGACAGCAAGCTAGGGTTC 58.716 52.381 0.00 0.00 0.00 3.62
395 396 0.037326 TGACAGCAAGCTAGGGTTCG 60.037 55.000 0.00 0.00 0.00 3.95
396 397 0.037232 GACAGCAAGCTAGGGTTCGT 60.037 55.000 0.00 0.00 0.00 3.85
397 398 1.203994 GACAGCAAGCTAGGGTTCGTA 59.796 52.381 0.00 0.00 0.00 3.43
398 399 1.831736 ACAGCAAGCTAGGGTTCGTAT 59.168 47.619 0.00 0.00 0.00 3.06
399 400 2.236395 ACAGCAAGCTAGGGTTCGTATT 59.764 45.455 0.00 0.00 0.00 1.89
400 401 2.609459 CAGCAAGCTAGGGTTCGTATTG 59.391 50.000 0.00 0.00 0.00 1.90
401 402 1.940613 GCAAGCTAGGGTTCGTATTGG 59.059 52.381 0.00 0.00 0.00 3.16
402 403 2.561569 CAAGCTAGGGTTCGTATTGGG 58.438 52.381 0.00 0.00 0.00 4.12
403 404 0.468648 AGCTAGGGTTCGTATTGGGC 59.531 55.000 0.00 0.00 0.00 5.36
404 405 0.878961 GCTAGGGTTCGTATTGGGCG 60.879 60.000 0.00 0.00 0.00 6.13
405 406 0.249741 CTAGGGTTCGTATTGGGCGG 60.250 60.000 0.00 0.00 0.00 6.13
406 407 2.314415 TAGGGTTCGTATTGGGCGGC 62.314 60.000 0.00 0.00 0.00 6.53
407 408 3.569690 GGTTCGTATTGGGCGGCG 61.570 66.667 0.51 0.51 0.00 6.46
408 409 3.569690 GTTCGTATTGGGCGGCGG 61.570 66.667 9.78 0.00 0.00 6.13
409 410 3.772281 TTCGTATTGGGCGGCGGA 61.772 61.111 9.78 0.00 0.00 5.54
410 411 3.726595 TTCGTATTGGGCGGCGGAG 62.727 63.158 9.78 0.00 0.00 4.63
412 413 3.857038 GTATTGGGCGGCGGAGGA 61.857 66.667 9.78 0.00 0.00 3.71
413 414 3.546543 TATTGGGCGGCGGAGGAG 61.547 66.667 9.78 0.00 0.00 3.69
420 421 2.815647 CGGCGGAGGAGCAAACTC 60.816 66.667 0.00 0.00 42.66 3.01
421 422 2.665603 GGCGGAGGAGCAAACTCT 59.334 61.111 0.00 0.00 42.98 3.24
422 423 1.898154 GGCGGAGGAGCAAACTCTA 59.102 57.895 0.00 0.00 42.98 2.43
423 424 0.460459 GGCGGAGGAGCAAACTCTAC 60.460 60.000 0.00 0.00 42.98 2.59
424 425 0.802607 GCGGAGGAGCAAACTCTACG 60.803 60.000 0.00 0.00 42.98 3.51
425 426 0.526662 CGGAGGAGCAAACTCTACGT 59.473 55.000 0.00 0.00 42.98 3.57
426 427 1.732732 CGGAGGAGCAAACTCTACGTG 60.733 57.143 0.00 0.00 42.98 4.49
427 428 1.272769 GGAGGAGCAAACTCTACGTGT 59.727 52.381 0.00 0.00 42.98 4.49
428 429 2.329379 GAGGAGCAAACTCTACGTGTG 58.671 52.381 0.00 0.00 42.98 3.82
429 430 1.000955 AGGAGCAAACTCTACGTGTGG 59.999 52.381 0.00 0.00 42.98 4.17
430 431 1.000506 GGAGCAAACTCTACGTGTGGA 59.999 52.381 0.00 0.00 42.98 4.02
431 432 2.059541 GAGCAAACTCTACGTGTGGAC 58.940 52.381 0.00 0.00 40.03 4.02
432 433 1.687123 AGCAAACTCTACGTGTGGACT 59.313 47.619 0.00 0.00 31.11 3.85
433 434 2.102588 AGCAAACTCTACGTGTGGACTT 59.897 45.455 0.00 0.00 31.11 3.01
434 435 2.221055 GCAAACTCTACGTGTGGACTTG 59.779 50.000 0.00 0.00 31.11 3.16
435 436 3.454375 CAAACTCTACGTGTGGACTTGT 58.546 45.455 0.00 0.00 0.00 3.16
436 437 3.814005 AACTCTACGTGTGGACTTGTT 57.186 42.857 0.00 0.00 0.00 2.83
437 438 3.814005 ACTCTACGTGTGGACTTGTTT 57.186 42.857 0.00 0.00 0.00 2.83
438 439 3.454375 ACTCTACGTGTGGACTTGTTTG 58.546 45.455 0.00 0.00 0.00 2.93
439 440 2.800544 CTCTACGTGTGGACTTGTTTGG 59.199 50.000 0.00 0.00 0.00 3.28
440 441 1.263217 CTACGTGTGGACTTGTTTGGC 59.737 52.381 0.00 0.00 0.00 4.52
441 442 1.010125 CGTGTGGACTTGTTTGGCG 60.010 57.895 0.00 0.00 0.00 5.69
442 443 1.433053 CGTGTGGACTTGTTTGGCGA 61.433 55.000 0.00 0.00 0.00 5.54
443 444 0.307760 GTGTGGACTTGTTTGGCGAG 59.692 55.000 0.00 0.00 34.71 5.03
444 445 0.179234 TGTGGACTTGTTTGGCGAGA 59.821 50.000 0.00 0.00 32.82 4.04
445 446 1.305201 GTGGACTTGTTTGGCGAGAA 58.695 50.000 0.00 0.00 32.82 2.87
446 447 1.264288 GTGGACTTGTTTGGCGAGAAG 59.736 52.381 0.00 0.00 32.82 2.85
456 457 2.964389 GCGAGAAGCGGATGAGCC 60.964 66.667 0.00 0.00 41.29 4.70
457 458 2.496341 CGAGAAGCGGATGAGCCA 59.504 61.111 0.00 0.00 38.01 4.75
458 459 1.880340 CGAGAAGCGGATGAGCCAC 60.880 63.158 0.00 0.00 38.01 5.01
459 460 1.522580 GAGAAGCGGATGAGCCACC 60.523 63.158 0.00 0.00 38.01 4.61
460 461 2.514824 GAAGCGGATGAGCCACCC 60.515 66.667 0.00 0.00 38.01 4.61
461 462 3.011517 AAGCGGATGAGCCACCCT 61.012 61.111 0.00 0.00 38.01 4.34
462 463 2.543067 GAAGCGGATGAGCCACCCTT 62.543 60.000 0.00 0.00 38.01 3.95
463 464 2.514824 GCGGATGAGCCACCCTTC 60.515 66.667 0.00 0.00 35.94 3.46
464 465 2.190578 CGGATGAGCCACCCTTCC 59.809 66.667 0.00 0.00 35.94 3.46
465 466 2.597903 GGATGAGCCACCCTTCCC 59.402 66.667 0.00 0.00 36.34 3.97
466 467 2.003548 GGATGAGCCACCCTTCCCT 61.004 63.158 0.00 0.00 36.34 4.20
467 468 1.529309 GATGAGCCACCCTTCCCTC 59.471 63.158 0.00 0.00 0.00 4.30
468 469 1.988982 GATGAGCCACCCTTCCCTCC 61.989 65.000 0.00 0.00 0.00 4.30
469 470 2.285743 GAGCCACCCTTCCCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
470 471 1.003051 GAGCCACCCTTCCCTCCTA 59.997 63.158 0.00 0.00 0.00 2.94
471 472 0.400670 GAGCCACCCTTCCCTCCTAT 60.401 60.000 0.00 0.00 0.00 2.57
472 473 0.046397 AGCCACCCTTCCCTCCTATT 59.954 55.000 0.00 0.00 0.00 1.73
473 474 0.927029 GCCACCCTTCCCTCCTATTT 59.073 55.000 0.00 0.00 0.00 1.40
474 475 2.132686 GCCACCCTTCCCTCCTATTTA 58.867 52.381 0.00 0.00 0.00 1.40
475 476 2.512476 GCCACCCTTCCCTCCTATTTAA 59.488 50.000 0.00 0.00 0.00 1.52
476 477 3.053170 GCCACCCTTCCCTCCTATTTAAA 60.053 47.826 0.00 0.00 0.00 1.52
491 492 3.651803 TTTAAAAAGGACGTGGCATGG 57.348 42.857 12.05 0.00 0.00 3.66
494 495 0.179004 AAAAGGACGTGGCATGGACA 60.179 50.000 12.05 0.00 0.00 4.02
502 503 1.066858 CGTGGCATGGACACTTCTAGT 60.067 52.381 0.00 0.00 39.83 2.57
519 520 4.572571 TGGTTGACGTGTGGGCCC 62.573 66.667 17.59 17.59 0.00 5.80
520 521 4.572571 GGTTGACGTGTGGGCCCA 62.573 66.667 24.45 24.45 0.00 5.36
523 524 2.747443 TTGACGTGTGGGCCCAAGA 61.747 57.895 30.64 14.35 0.00 3.02
531 532 1.935400 TGGGCCCAAGATGGATGGT 60.935 57.895 26.33 0.00 40.96 3.55
534 535 1.044790 GGCCCAAGATGGATGGTTGG 61.045 60.000 0.00 0.00 40.96 3.77
535 536 0.033208 GCCCAAGATGGATGGTTGGA 60.033 55.000 1.82 0.00 43.01 3.53
543 544 1.224592 GGATGGTTGGAGCCGACAT 59.775 57.895 9.05 0.30 32.12 3.06
556 558 4.451150 GACATGCGGCCCGAGTCA 62.451 66.667 7.68 0.00 0.00 3.41
566 568 2.045242 CCGAGTCAGACTCCGGGA 60.045 66.667 22.65 0.00 42.12 5.14
595 606 1.947146 CGTGTTTGTCTCGCGTCCA 60.947 57.895 5.77 0.00 34.71 4.02
599 610 0.163788 GTTTGTCTCGCGTCCATGTG 59.836 55.000 5.77 0.00 0.00 3.21
616 638 1.957177 TGTGGACGCAAATTTTAGCCA 59.043 42.857 0.00 0.00 0.00 4.75
622 644 4.327087 GGACGCAAATTTTAGCCAGAAATG 59.673 41.667 0.00 0.00 0.00 2.32
624 646 3.679025 CGCAAATTTTAGCCAGAAATGCA 59.321 39.130 0.00 0.00 0.00 3.96
626 648 5.163834 CGCAAATTTTAGCCAGAAATGCATT 60.164 36.000 5.99 5.99 0.00 3.56
633 655 3.921677 AGCCAGAAATGCATTCAAACAG 58.078 40.909 13.38 1.33 40.72 3.16
641 663 4.669206 ATGCATTCAAACAGACACCAAA 57.331 36.364 0.00 0.00 0.00 3.28
643 665 3.194329 TGCATTCAAACAGACACCAAACA 59.806 39.130 0.00 0.00 0.00 2.83
652 674 3.632145 ACAGACACCAAACAGACCAAATC 59.368 43.478 0.00 0.00 0.00 2.17
654 676 5.063204 CAGACACCAAACAGACCAAATCTA 58.937 41.667 0.00 0.00 35.15 1.98
656 678 4.142038 ACACCAAACAGACCAAATCTACC 58.858 43.478 0.00 0.00 35.15 3.18
657 679 3.506067 CACCAAACAGACCAAATCTACCC 59.494 47.826 0.00 0.00 35.15 3.69
662 684 2.308570 ACAGACCAAATCTACCCATGCA 59.691 45.455 0.00 0.00 35.15 3.96
664 686 3.317149 CAGACCAAATCTACCCATGCATG 59.683 47.826 20.19 20.19 35.15 4.06
665 687 3.202818 AGACCAAATCTACCCATGCATGA 59.797 43.478 28.31 7.94 35.15 3.07
666 688 4.141088 AGACCAAATCTACCCATGCATGAT 60.141 41.667 28.31 17.30 35.15 2.45
776 840 9.944376 ATGTATTTGTGAACTAGAGTATGTTGT 57.056 29.630 0.00 0.00 0.00 3.32
777 841 9.772973 TGTATTTGTGAACTAGAGTATGTTGTT 57.227 29.630 0.00 0.00 0.00 2.83
783 847 9.602568 TGTGAACTAGAGTATGTTGTTTAAACA 57.397 29.630 17.01 17.01 37.08 2.83
836 903 5.128205 CCATCACATCTCATCCAGCTAAAA 58.872 41.667 0.00 0.00 0.00 1.52
841 908 4.946157 ACATCTCATCCAGCTAAAACTTGG 59.054 41.667 0.00 0.00 0.00 3.61
888 955 6.964370 TCGCGGAAATGATAGTAAAACAAATG 59.036 34.615 6.13 0.00 0.00 2.32
941 1010 0.875908 GCAAGTGTCAGCGTGAGTGA 60.876 55.000 0.00 0.00 0.00 3.41
942 1011 0.855349 CAAGTGTCAGCGTGAGTGAC 59.145 55.000 0.00 0.00 43.97 3.67
996 1068 1.302993 GGAAACCACCGCTTGCCTA 60.303 57.895 0.00 0.00 0.00 3.93
1051 1123 2.099141 TCTCAAACAAGCTCCATCCG 57.901 50.000 0.00 0.00 0.00 4.18
1089 1161 0.955428 TCAACACAGCCGCTGATTCC 60.955 55.000 27.12 0.00 35.18 3.01
1090 1162 1.073025 AACACAGCCGCTGATTCCA 59.927 52.632 27.12 0.00 35.18 3.53
1091 1163 0.322816 AACACAGCCGCTGATTCCAT 60.323 50.000 27.12 0.00 35.18 3.41
1094 1166 0.745845 ACAGCCGCTGATTCCATCAC 60.746 55.000 27.12 0.00 35.06 3.06
1099 1171 2.035961 GCCGCTGATTCCATCACTACTA 59.964 50.000 0.00 0.00 35.06 1.82
1102 1174 3.068165 CGCTGATTCCATCACTACTACCA 59.932 47.826 0.00 0.00 35.06 3.25
1114 1186 2.379226 ACTACTACCACTCCACACCTCT 59.621 50.000 0.00 0.00 0.00 3.69
1497 1572 2.736995 CGGCTCGTTCGGCTTTGA 60.737 61.111 5.89 0.00 0.00 2.69
1615 1737 4.680237 CAGCAGGTTCCGGTCGCA 62.680 66.667 0.00 0.00 0.00 5.10
1618 1740 2.738521 CAGGTTCCGGTCGCAGTG 60.739 66.667 0.00 0.00 0.00 3.66
1648 1770 1.744741 GCTCCAGCAGAAGCAGGTC 60.745 63.158 0.00 0.00 46.64 3.85
1652 1774 4.400961 AGCAGAAGCAGGTCCCGC 62.401 66.667 0.00 0.00 45.49 6.13
1732 1854 3.128188 CTCCAGCAGCAGCAGCAG 61.128 66.667 12.92 3.65 45.49 4.24
1968 2124 5.575606 TGTTCGACTAATTTAGCACTACTGC 59.424 40.000 3.28 0.00 44.63 4.40
1987 2166 1.852895 GCCAAGTTGTAGATAGTCGCG 59.147 52.381 0.00 0.00 0.00 5.87
1988 2167 1.852895 CCAAGTTGTAGATAGTCGCGC 59.147 52.381 0.00 0.00 0.00 6.86
1994 2173 1.602851 TGTAGATAGTCGCGCTCTTCC 59.397 52.381 5.56 0.00 0.00 3.46
2031 2211 3.187432 GCAGAGTAGGCAGTTTGTTCTTC 59.813 47.826 0.00 0.00 0.00 2.87
2032 2212 4.380531 CAGAGTAGGCAGTTTGTTCTTCA 58.619 43.478 0.00 0.00 0.00 3.02
2033 2213 4.999950 CAGAGTAGGCAGTTTGTTCTTCAT 59.000 41.667 0.00 0.00 0.00 2.57
2036 2216 5.133221 AGTAGGCAGTTTGTTCTTCATTGT 58.867 37.500 0.00 0.00 0.00 2.71
2037 2217 6.296026 AGTAGGCAGTTTGTTCTTCATTGTA 58.704 36.000 0.00 0.00 0.00 2.41
2041 2222 6.204882 AGGCAGTTTGTTCTTCATTGTAGTAC 59.795 38.462 0.00 0.00 0.00 2.73
2093 2274 0.256177 GGGGAAAAGGGCTACTCCTG 59.744 60.000 0.00 0.00 37.20 3.86
2095 2276 1.340114 GGGAAAAGGGCTACTCCTGTG 60.340 57.143 0.00 0.00 37.20 3.66
2097 2278 2.570302 GGAAAAGGGCTACTCCTGTGTA 59.430 50.000 0.00 0.00 37.20 2.90
2162 2356 0.729116 GTGCACTCCATGAATCCACG 59.271 55.000 10.32 0.00 0.00 4.94
2172 2366 5.116180 TCCATGAATCCACGTCAAAGATAC 58.884 41.667 0.00 0.00 0.00 2.24
2173 2367 5.104941 TCCATGAATCCACGTCAAAGATACT 60.105 40.000 0.00 0.00 0.00 2.12
2174 2368 5.007039 CCATGAATCCACGTCAAAGATACTG 59.993 44.000 0.00 0.00 0.00 2.74
2175 2369 5.147330 TGAATCCACGTCAAAGATACTGT 57.853 39.130 0.00 0.00 0.00 3.55
2176 2370 6.275494 TGAATCCACGTCAAAGATACTGTA 57.725 37.500 0.00 0.00 0.00 2.74
2246 2440 4.278170 TGACAACCTGTGAAAATGATGGAC 59.722 41.667 0.00 0.00 0.00 4.02
2260 2454 0.110486 ATGGACTTGGACGGCTTTGT 59.890 50.000 0.00 0.00 0.00 2.83
2329 2677 8.258708 GGAATTATCCTATTCCTACGCACTAAT 58.741 37.037 7.89 0.00 46.62 1.73
2330 2678 9.303537 GAATTATCCTATTCCTACGCACTAATC 57.696 37.037 0.00 0.00 0.00 1.75
2333 2681 3.833070 CCTATTCCTACGCACTAATCCCT 59.167 47.826 0.00 0.00 0.00 4.20
2335 2683 5.479375 CCTATTCCTACGCACTAATCCCTAA 59.521 44.000 0.00 0.00 0.00 2.69
2336 2684 5.881923 ATTCCTACGCACTAATCCCTAAA 57.118 39.130 0.00 0.00 0.00 1.85
2338 2686 4.284178 TCCTACGCACTAATCCCTAAACT 58.716 43.478 0.00 0.00 0.00 2.66
2378 4904 1.514443 GAGCACGCTCACTCCGTAC 60.514 63.158 14.10 0.00 42.31 3.67
2397 4923 5.699764 GTACGTATACGAACGCTATCAAC 57.300 43.478 30.77 9.06 46.71 3.18
2398 4924 3.283256 ACGTATACGAACGCTATCAACG 58.717 45.455 30.77 2.65 46.71 4.10
2399 4925 3.242413 ACGTATACGAACGCTATCAACGT 60.242 43.478 30.77 3.35 46.71 3.99
2400 4926 4.026062 ACGTATACGAACGCTATCAACGTA 60.026 41.667 30.77 0.00 46.71 3.57
2401 4927 4.543551 CGTATACGAACGCTATCAACGTAG 59.456 45.833 20.58 0.00 44.30 3.51
2402 4928 5.833185 CGTATACGAACGCTATCAACGTAGT 60.833 44.000 20.58 0.00 44.30 2.73
2503 5029 5.678583 ACATCAAGATTCATAGACCACCTG 58.321 41.667 0.00 0.00 0.00 4.00
2504 5030 5.426509 ACATCAAGATTCATAGACCACCTGA 59.573 40.000 0.00 0.00 0.00 3.86
2515 5041 0.535780 ACCACCTGACGACGACTACA 60.536 55.000 0.00 0.00 0.00 2.74
2525 5051 2.223641 ACGACGACTACAAGCACTGAAA 60.224 45.455 0.00 0.00 0.00 2.69
2609 5135 1.135746 GTAGACAGTCGGGAAGTCGTG 60.136 57.143 0.00 0.00 37.36 4.35
2627 5153 2.062177 GGTGCTAAGGCCCCGTAGA 61.062 63.158 10.83 0.00 37.74 2.59
2634 5160 3.712907 GGCCCCGTAGAACCAGCA 61.713 66.667 0.00 0.00 0.00 4.41
2642 5168 1.670087 CGTAGAACCAGCACACCAGAG 60.670 57.143 0.00 0.00 0.00 3.35
2681 5207 9.179552 CAGATGAAGAATAACGTAGATCAGAAG 57.820 37.037 0.00 0.00 0.00 2.85
2697 5223 2.171448 CAGAAGGATCCAACCCGAAGAT 59.829 50.000 15.82 0.00 0.00 2.40
2741 5267 1.471501 CGAGATCCGAGCAAATCCACA 60.472 52.381 0.00 0.00 41.76 4.17
2749 5275 5.007034 TCCGAGCAAATCCACAAAAGATAA 58.993 37.500 0.00 0.00 0.00 1.75
2777 5303 2.088674 GAGACACACCTCCACACGCT 62.089 60.000 0.00 0.00 0.00 5.07
2797 5323 2.967053 TCACCAACAGTGCTAGACGCA 61.967 52.381 0.00 0.00 46.81 5.24
2843 5369 6.368805 GGGAAGACCTTTATTCCATCTTCAT 58.631 40.000 12.81 0.00 45.70 2.57
2875 5401 1.197949 CGTCTCGTCTTTCTGAGCAGA 59.802 52.381 0.00 0.00 35.27 4.26
2879 5405 3.068165 TCTCGTCTTTCTGAGCAGAACAA 59.932 43.478 12.16 1.67 46.13 2.83
2894 5420 4.507756 GCAGAACAAAAACCCTAGCAAAAG 59.492 41.667 0.00 0.00 0.00 2.27
2910 5436 6.049263 AGCAAAAGTGAAAGAAACGACTAG 57.951 37.500 0.00 0.00 0.00 2.57
3023 5549 2.239907 GACAGGAGGCAGAAACCCTAAT 59.760 50.000 0.00 0.00 31.41 1.73
3026 5553 3.696548 CAGGAGGCAGAAACCCTAATTTC 59.303 47.826 0.00 0.00 38.62 2.17
3046 5575 0.491823 TTTGTGGAGGAGGAGGAGGA 59.508 55.000 0.00 0.00 0.00 3.71
3047 5576 0.252284 TTGTGGAGGAGGAGGAGGAC 60.252 60.000 0.00 0.00 0.00 3.85
3056 5585 2.516460 GAGGAGGACGCGGCTAGA 60.516 66.667 13.91 0.00 0.00 2.43
3057 5586 2.044252 AGGAGGACGCGGCTAGAA 60.044 61.111 13.91 0.00 0.00 2.10
3058 5587 1.664321 GAGGAGGACGCGGCTAGAAA 61.664 60.000 13.91 0.00 0.00 2.52
3059 5588 1.227002 GGAGGACGCGGCTAGAAAG 60.227 63.158 13.91 0.00 0.00 2.62
3060 5589 1.227002 GAGGACGCGGCTAGAAAGG 60.227 63.158 13.91 0.00 0.00 3.11
3061 5590 2.890961 GGACGCGGCTAGAAAGGC 60.891 66.667 13.91 0.00 44.69 4.35
3062 5591 2.184579 GACGCGGCTAGAAAGGCT 59.815 61.111 12.47 0.00 45.93 4.58
3063 5592 1.448013 GACGCGGCTAGAAAGGCTT 60.448 57.895 12.47 0.00 45.93 4.35
3064 5593 1.422179 GACGCGGCTAGAAAGGCTTC 61.422 60.000 12.47 0.00 45.93 3.86
3065 5594 2.517450 CGCGGCTAGAAAGGCTTCG 61.517 63.158 0.00 0.00 45.93 3.79
3066 5595 1.448013 GCGGCTAGAAAGGCTTCGT 60.448 57.895 0.00 0.00 45.93 3.85
3067 5596 1.422179 GCGGCTAGAAAGGCTTCGTC 61.422 60.000 0.00 0.00 45.93 4.20
3068 5597 0.173708 CGGCTAGAAAGGCTTCGTCT 59.826 55.000 0.00 3.17 45.93 4.18
3069 5598 1.646189 GGCTAGAAAGGCTTCGTCTG 58.354 55.000 10.94 3.77 44.73 3.51
3070 5599 1.003108 GCTAGAAAGGCTTCGTCTGC 58.997 55.000 10.94 8.84 36.61 4.26
3077 5606 4.255126 GCTTCGTCTGCCAACGTA 57.745 55.556 7.70 0.00 43.08 3.57
3078 5607 2.070861 GCTTCGTCTGCCAACGTAG 58.929 57.895 9.32 9.32 43.08 3.51
3079 5608 2.070861 CTTCGTCTGCCAACGTAGC 58.929 57.895 7.70 3.62 43.08 3.58
3080 5609 1.352156 CTTCGTCTGCCAACGTAGCC 61.352 60.000 7.92 0.00 43.08 3.93
3081 5610 1.812686 TTCGTCTGCCAACGTAGCCT 61.813 55.000 7.92 0.00 43.08 4.58
3082 5611 1.374252 CGTCTGCCAACGTAGCCTT 60.374 57.895 7.92 0.00 37.86 4.35
3083 5612 1.352156 CGTCTGCCAACGTAGCCTTC 61.352 60.000 7.92 0.00 37.86 3.46
3084 5613 0.320421 GTCTGCCAACGTAGCCTTCA 60.320 55.000 7.92 0.00 0.00 3.02
3085 5614 0.613260 TCTGCCAACGTAGCCTTCAT 59.387 50.000 7.92 0.00 0.00 2.57
3086 5615 1.828595 TCTGCCAACGTAGCCTTCATA 59.171 47.619 7.92 0.00 0.00 2.15
3087 5616 2.235155 TCTGCCAACGTAGCCTTCATAA 59.765 45.455 7.92 0.00 0.00 1.90
3088 5617 3.118408 TCTGCCAACGTAGCCTTCATAAT 60.118 43.478 7.92 0.00 0.00 1.28
3089 5618 3.616219 TGCCAACGTAGCCTTCATAATT 58.384 40.909 7.92 0.00 0.00 1.40
3090 5619 4.771903 TGCCAACGTAGCCTTCATAATTA 58.228 39.130 7.92 0.00 0.00 1.40
3091 5620 5.373222 TGCCAACGTAGCCTTCATAATTAT 58.627 37.500 7.92 0.00 0.00 1.28
3092 5621 5.825679 TGCCAACGTAGCCTTCATAATTATT 59.174 36.000 7.92 0.00 0.00 1.40
3093 5622 6.320164 TGCCAACGTAGCCTTCATAATTATTT 59.680 34.615 7.92 0.00 0.00 1.40
3094 5623 7.147983 TGCCAACGTAGCCTTCATAATTATTTT 60.148 33.333 7.92 0.00 0.00 1.82
3095 5624 7.704899 GCCAACGTAGCCTTCATAATTATTTTT 59.295 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.805231 TACGTGCGCCATCGTGGG 62.805 66.667 24.58 0.00 40.50 4.61
1 2 2.601628 TACTACGTGCGCCATCGTGG 62.602 60.000 24.58 23.71 42.48 4.94
2 3 1.226463 TACTACGTGCGCCATCGTG 60.226 57.895 24.58 18.20 40.50 4.35
4 5 0.928908 GAGTACTACGTGCGCCATCG 60.929 60.000 4.18 10.17 39.07 3.84
5 6 0.381089 AGAGTACTACGTGCGCCATC 59.619 55.000 4.18 0.00 0.00 3.51
6 7 0.100682 CAGAGTACTACGTGCGCCAT 59.899 55.000 4.18 0.00 0.00 4.40
8 9 0.522915 GACAGAGTACTACGTGCGCC 60.523 60.000 4.18 0.00 0.00 6.53
9 10 0.856490 CGACAGAGTACTACGTGCGC 60.856 60.000 0.00 0.00 0.00 6.09
10 11 0.856490 GCGACAGAGTACTACGTGCG 60.856 60.000 0.00 4.02 0.00 5.34
11 12 0.856490 CGCGACAGAGTACTACGTGC 60.856 60.000 0.00 2.53 32.74 5.34
12 13 0.717784 TCGCGACAGAGTACTACGTG 59.282 55.000 3.71 14.22 37.15 4.49
13 14 0.718343 GTCGCGACAGAGTACTACGT 59.282 55.000 33.09 0.00 0.00 3.57
14 15 0.026027 GGTCGCGACAGAGTACTACG 59.974 60.000 37.26 1.14 0.00 3.51
15 16 0.376502 GGGTCGCGACAGAGTACTAC 59.623 60.000 37.26 18.19 0.00 2.73
16 17 0.036105 TGGGTCGCGACAGAGTACTA 60.036 55.000 37.26 16.36 0.00 1.82
17 18 1.303074 TGGGTCGCGACAGAGTACT 60.303 57.895 37.26 0.00 0.00 2.73
18 19 1.136984 CTGGGTCGCGACAGAGTAC 59.863 63.158 37.26 20.32 36.86 2.73
19 20 0.607217 TTCTGGGTCGCGACAGAGTA 60.607 55.000 37.26 22.92 43.84 2.59
20 21 1.867919 CTTCTGGGTCGCGACAGAGT 61.868 60.000 37.26 0.00 43.84 3.24
21 22 1.153939 CTTCTGGGTCGCGACAGAG 60.154 63.158 37.26 29.81 43.84 3.35
22 23 1.863662 GACTTCTGGGTCGCGACAGA 61.864 60.000 37.26 29.00 41.63 3.41
23 24 1.444553 GACTTCTGGGTCGCGACAG 60.445 63.158 37.26 27.31 36.07 3.51
24 25 2.649034 GACTTCTGGGTCGCGACA 59.351 61.111 37.26 19.57 0.00 4.35
25 26 2.126031 GGACTTCTGGGTCGCGAC 60.126 66.667 30.67 30.67 37.12 5.19
26 27 3.379445 GGGACTTCTGGGTCGCGA 61.379 66.667 3.71 3.71 38.87 5.87
28 29 2.113243 AACTGGGACTTCTGGGTCGC 62.113 60.000 0.00 0.00 45.42 5.19
29 30 0.037232 GAACTGGGACTTCTGGGTCG 60.037 60.000 0.00 0.00 37.12 4.79
30 31 0.037232 CGAACTGGGACTTCTGGGTC 60.037 60.000 0.00 0.00 35.66 4.46
31 32 1.481056 CCGAACTGGGACTTCTGGGT 61.481 60.000 0.00 0.00 0.00 4.51
32 33 1.296715 CCGAACTGGGACTTCTGGG 59.703 63.158 0.00 0.00 0.00 4.45
50 51 4.944372 CATACGCGCCGGAGTCCC 62.944 72.222 5.05 0.00 0.00 4.46
51 52 4.203076 ACATACGCGCCGGAGTCC 62.203 66.667 5.05 0.00 0.00 3.85
52 53 2.954868 CACATACGCGCCGGAGTC 60.955 66.667 5.05 0.00 0.00 3.36
53 54 4.508128 CCACATACGCGCCGGAGT 62.508 66.667 5.05 3.92 0.00 3.85
61 62 4.807039 ACGCGACCCCACATACGC 62.807 66.667 15.93 0.00 46.08 4.42
62 63 2.581409 GACGCGACCCCACATACG 60.581 66.667 15.93 0.00 0.00 3.06
63 64 2.581409 CGACGCGACCCCACATAC 60.581 66.667 15.93 0.00 0.00 2.39
64 65 2.638354 AACGACGCGACCCCACATA 61.638 57.895 15.93 0.00 0.00 2.29
65 66 3.998672 AACGACGCGACCCCACAT 61.999 61.111 15.93 0.00 0.00 3.21
66 67 4.953868 CAACGACGCGACCCCACA 62.954 66.667 15.93 0.00 0.00 4.17
78 79 1.232621 TTCTCTCGTCGGAGCAACGA 61.233 55.000 0.00 0.00 46.08 3.85
79 80 0.794981 CTTCTCTCGTCGGAGCAACG 60.795 60.000 6.01 0.00 40.26 4.10
80 81 0.456995 CCTTCTCTCGTCGGAGCAAC 60.457 60.000 6.01 0.00 40.26 4.17
81 82 1.595993 CCCTTCTCTCGTCGGAGCAA 61.596 60.000 6.01 2.58 40.26 3.91
82 83 2.046864 CCCTTCTCTCGTCGGAGCA 61.047 63.158 6.01 0.00 40.26 4.26
83 84 2.802106 CCCTTCTCTCGTCGGAGC 59.198 66.667 6.01 0.00 40.26 4.70
84 85 2.046864 TGCCCTTCTCTCGTCGGAG 61.047 63.158 4.82 4.82 41.89 4.63
85 86 2.035155 TGCCCTTCTCTCGTCGGA 59.965 61.111 0.00 0.00 0.00 4.55
86 87 2.182030 GTGCCCTTCTCTCGTCGG 59.818 66.667 0.00 0.00 0.00 4.79
87 88 2.202492 CGTGCCCTTCTCTCGTCG 60.202 66.667 0.00 0.00 0.00 5.12
88 89 2.182030 CCGTGCCCTTCTCTCGTC 59.818 66.667 0.00 0.00 0.00 4.20
89 90 2.600769 ACCGTGCCCTTCTCTCGT 60.601 61.111 0.00 0.00 0.00 4.18
90 91 2.125912 CACCGTGCCCTTCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
91 92 2.113243 AACCACCGTGCCCTTCTCTC 62.113 60.000 0.00 0.00 0.00 3.20
92 93 2.147387 AACCACCGTGCCCTTCTCT 61.147 57.895 0.00 0.00 0.00 3.10
93 94 1.966451 CAACCACCGTGCCCTTCTC 60.966 63.158 0.00 0.00 0.00 2.87
94 95 2.113139 CAACCACCGTGCCCTTCT 59.887 61.111 0.00 0.00 0.00 2.85
95 96 3.670377 GCAACCACCGTGCCCTTC 61.670 66.667 0.00 0.00 35.91 3.46
99 100 3.322706 GATTCGCAACCACCGTGCC 62.323 63.158 0.00 0.00 38.86 5.01
100 101 2.175811 GATTCGCAACCACCGTGC 59.824 61.111 0.00 0.00 38.68 5.34
101 102 1.635663 GGAGATTCGCAACCACCGTG 61.636 60.000 0.00 0.00 0.00 4.94
102 103 1.375523 GGAGATTCGCAACCACCGT 60.376 57.895 0.00 0.00 0.00 4.83
103 104 1.361668 CTGGAGATTCGCAACCACCG 61.362 60.000 0.00 0.00 0.00 4.94
104 105 0.321653 ACTGGAGATTCGCAACCACC 60.322 55.000 0.00 0.00 0.00 4.61
105 106 0.798776 CACTGGAGATTCGCAACCAC 59.201 55.000 0.00 0.00 0.00 4.16
106 107 0.955428 GCACTGGAGATTCGCAACCA 60.955 55.000 0.00 0.00 0.00 3.67
107 108 0.674895 AGCACTGGAGATTCGCAACC 60.675 55.000 0.00 0.00 0.00 3.77
108 109 0.723981 GAGCACTGGAGATTCGCAAC 59.276 55.000 0.00 0.00 0.00 4.17
109 110 0.737367 CGAGCACTGGAGATTCGCAA 60.737 55.000 0.00 0.00 0.00 4.85
110 111 1.153765 CGAGCACTGGAGATTCGCA 60.154 57.895 0.00 0.00 0.00 5.10
111 112 3.698382 CGAGCACTGGAGATTCGC 58.302 61.111 0.00 0.00 0.00 4.70
112 113 2.226896 CGCGAGCACTGGAGATTCG 61.227 63.158 0.00 0.00 0.00 3.34
113 114 3.698382 CGCGAGCACTGGAGATTC 58.302 61.111 0.00 0.00 0.00 2.52
129 130 4.764336 TACCGTTGTCCGAGCGCG 62.764 66.667 0.00 0.00 39.56 6.86
130 131 2.202703 ATACCGTTGTCCGAGCGC 60.203 61.111 0.00 0.00 39.56 5.92
131 132 1.876714 CCATACCGTTGTCCGAGCG 60.877 63.158 0.00 0.00 39.56 5.03
132 133 2.171725 GCCATACCGTTGTCCGAGC 61.172 63.158 0.00 0.00 39.56 5.03
133 134 1.520787 GGCCATACCGTTGTCCGAG 60.521 63.158 0.00 0.00 39.56 4.63
134 135 2.580276 GGCCATACCGTTGTCCGA 59.420 61.111 0.00 0.00 39.56 4.55
143 144 0.250901 ATTCTGATGCCGGCCATACC 60.251 55.000 26.77 8.83 33.29 2.73
144 145 0.877071 CATTCTGATGCCGGCCATAC 59.123 55.000 26.77 12.95 33.29 2.39
145 146 3.327600 CATTCTGATGCCGGCCATA 57.672 52.632 26.77 5.45 33.29 2.74
146 147 4.169271 CATTCTGATGCCGGCCAT 57.831 55.556 26.77 17.61 36.70 4.40
158 159 0.467384 CTCGACCCCAGATGCATTCT 59.533 55.000 0.00 0.00 33.90 2.40
159 160 0.533755 CCTCGACCCCAGATGCATTC 60.534 60.000 0.00 0.00 0.00 2.67
160 161 1.274703 ACCTCGACCCCAGATGCATT 61.275 55.000 0.00 0.00 0.00 3.56
161 162 1.690633 ACCTCGACCCCAGATGCAT 60.691 57.895 0.00 0.00 0.00 3.96
162 163 2.284625 ACCTCGACCCCAGATGCA 60.285 61.111 0.00 0.00 0.00 3.96
163 164 2.187946 CACCTCGACCCCAGATGC 59.812 66.667 0.00 0.00 0.00 3.91
164 165 1.043116 TAGCACCTCGACCCCAGATG 61.043 60.000 0.00 0.00 0.00 2.90
165 166 0.757188 CTAGCACCTCGACCCCAGAT 60.757 60.000 0.00 0.00 0.00 2.90
166 167 1.379977 CTAGCACCTCGACCCCAGA 60.380 63.158 0.00 0.00 0.00 3.86
167 168 3.082579 GCTAGCACCTCGACCCCAG 62.083 68.421 10.63 0.00 0.00 4.45
168 169 3.075005 GCTAGCACCTCGACCCCA 61.075 66.667 10.63 0.00 0.00 4.96
169 170 3.851128 GGCTAGCACCTCGACCCC 61.851 72.222 18.24 0.00 0.00 4.95
170 171 4.208686 CGGCTAGCACCTCGACCC 62.209 72.222 18.24 0.00 0.00 4.46
171 172 3.450115 ACGGCTAGCACCTCGACC 61.450 66.667 18.24 0.00 0.00 4.79
172 173 2.202623 CACGGCTAGCACCTCGAC 60.203 66.667 18.24 0.00 0.00 4.20
173 174 4.129737 GCACGGCTAGCACCTCGA 62.130 66.667 18.24 0.00 0.00 4.04
180 181 3.952628 AAACTCCCGCACGGCTAGC 62.953 63.158 6.04 6.04 0.00 3.42
181 182 0.108520 TAAAACTCCCGCACGGCTAG 60.109 55.000 2.83 5.87 0.00 3.42
182 183 0.538118 ATAAAACTCCCGCACGGCTA 59.462 50.000 2.83 0.00 0.00 3.93
183 184 1.024579 CATAAAACTCCCGCACGGCT 61.025 55.000 2.83 0.00 0.00 5.52
184 185 1.303091 ACATAAAACTCCCGCACGGC 61.303 55.000 2.83 0.00 0.00 5.68
185 186 0.725117 GACATAAAACTCCCGCACGG 59.275 55.000 1.02 1.02 0.00 4.94
186 187 0.725117 GGACATAAAACTCCCGCACG 59.275 55.000 0.00 0.00 0.00 5.34
187 188 0.725117 CGGACATAAAACTCCCGCAC 59.275 55.000 0.00 0.00 33.47 5.34
188 189 0.391927 CCGGACATAAAACTCCCGCA 60.392 55.000 0.00 0.00 38.92 5.69
189 190 1.712018 GCCGGACATAAAACTCCCGC 61.712 60.000 5.05 0.00 38.92 6.13
190 191 0.391927 TGCCGGACATAAAACTCCCG 60.392 55.000 5.05 0.00 39.85 5.14
191 192 1.092348 GTGCCGGACATAAAACTCCC 58.908 55.000 5.05 0.00 0.00 4.30
192 193 2.007608 GAGTGCCGGACATAAAACTCC 58.992 52.381 5.05 0.00 0.00 3.85
193 194 2.007608 GGAGTGCCGGACATAAAACTC 58.992 52.381 5.05 5.34 34.62 3.01
194 195 1.339727 GGGAGTGCCGGACATAAAACT 60.340 52.381 5.05 0.00 33.83 2.66
195 196 1.092348 GGGAGTGCCGGACATAAAAC 58.908 55.000 5.05 0.00 33.83 2.43
196 197 0.693622 TGGGAGTGCCGGACATAAAA 59.306 50.000 5.05 0.00 33.83 1.52
197 198 0.251916 CTGGGAGTGCCGGACATAAA 59.748 55.000 5.05 0.00 33.83 1.40
198 199 0.907704 ACTGGGAGTGCCGGACATAA 60.908 55.000 17.68 0.00 33.83 1.90
199 200 1.305802 ACTGGGAGTGCCGGACATA 60.306 57.895 17.68 0.00 33.83 2.29
200 201 2.607750 ACTGGGAGTGCCGGACAT 60.608 61.111 17.68 0.00 33.83 3.06
201 202 3.625897 CACTGGGAGTGCCGGACA 61.626 66.667 17.68 0.00 39.62 4.02
202 203 4.394712 CCACTGGGAGTGCCGGAC 62.395 72.222 17.68 0.00 44.63 4.79
203 204 3.533079 TACCACTGGGAGTGCCGGA 62.533 63.158 17.68 0.00 44.63 5.14
204 205 3.000819 TACCACTGGGAGTGCCGG 61.001 66.667 8.18 8.18 44.63 6.13
205 206 2.283529 ACTACCACTGGGAGTGCCG 61.284 63.158 12.68 0.00 44.63 5.69
206 207 1.296715 CACTACCACTGGGAGTGCC 59.703 63.158 24.94 0.00 44.63 5.01
208 209 0.320771 GTGCACTACCACTGGGAGTG 60.321 60.000 30.03 30.03 45.53 3.51
209 210 0.762842 TGTGCACTACCACTGGGAGT 60.763 55.000 19.41 7.20 36.68 3.85
210 211 0.320771 GTGTGCACTACCACTGGGAG 60.321 60.000 19.41 5.66 36.68 4.30
211 212 1.752198 GTGTGCACTACCACTGGGA 59.248 57.895 19.41 0.00 36.68 4.37
212 213 1.667830 CGTGTGCACTACCACTGGG 60.668 63.158 19.41 0.00 36.68 4.45
213 214 1.667830 CCGTGTGCACTACCACTGG 60.668 63.158 19.41 9.52 36.68 4.00
214 215 1.069090 ACCGTGTGCACTACCACTG 59.931 57.895 19.41 6.72 36.68 3.66
215 216 1.069090 CACCGTGTGCACTACCACT 59.931 57.895 19.41 0.00 36.68 4.00
216 217 3.637714 CACCGTGTGCACTACCAC 58.362 61.111 19.41 6.76 36.28 4.16
230 231 1.084370 GCTACACATCTCGGTGCACC 61.084 60.000 26.78 26.78 42.55 5.01
231 232 1.084370 GGCTACACATCTCGGTGCAC 61.084 60.000 8.80 8.80 42.55 4.57
232 233 1.218047 GGCTACACATCTCGGTGCA 59.782 57.895 0.00 0.00 42.55 4.57
233 234 0.807667 CTGGCTACACATCTCGGTGC 60.808 60.000 0.00 0.00 42.55 5.01
234 235 0.179100 CCTGGCTACACATCTCGGTG 60.179 60.000 0.00 0.00 44.35 4.94
235 236 0.614979 ACCTGGCTACACATCTCGGT 60.615 55.000 0.00 0.00 0.00 4.69
236 237 0.179100 CACCTGGCTACACATCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
237 238 0.807667 GCACCTGGCTACACATCTCG 60.808 60.000 0.00 0.00 40.25 4.04
238 239 0.807667 CGCACCTGGCTACACATCTC 60.808 60.000 0.00 0.00 41.67 2.75
239 240 1.219124 CGCACCTGGCTACACATCT 59.781 57.895 0.00 0.00 41.67 2.90
240 241 0.673644 AACGCACCTGGCTACACATC 60.674 55.000 0.00 0.00 41.67 3.06
241 242 0.955428 CAACGCACCTGGCTACACAT 60.955 55.000 0.00 0.00 41.67 3.21
242 243 1.596752 CAACGCACCTGGCTACACA 60.597 57.895 0.00 0.00 41.67 3.72
243 244 2.325082 CCAACGCACCTGGCTACAC 61.325 63.158 0.00 0.00 41.67 2.90
244 245 2.031919 CCAACGCACCTGGCTACA 59.968 61.111 0.00 0.00 41.67 2.74
276 277 4.326766 CACTTTGGTGCCACGGCG 62.327 66.667 4.80 4.80 45.51 6.46
277 278 2.406452 CTTCACTTTGGTGCCACGGC 62.406 60.000 0.00 0.00 42.72 5.68
278 279 1.101049 ACTTCACTTTGGTGCCACGG 61.101 55.000 0.00 0.00 42.72 4.94
279 280 0.738389 AACTTCACTTTGGTGCCACG 59.262 50.000 0.00 0.00 42.72 4.94
280 281 1.202405 CCAACTTCACTTTGGTGCCAC 60.202 52.381 0.00 0.00 42.72 5.01
281 282 1.110442 CCAACTTCACTTTGGTGCCA 58.890 50.000 0.00 0.00 42.72 4.92
282 283 0.249447 GCCAACTTCACTTTGGTGCC 60.249 55.000 3.20 0.00 44.77 5.01
283 284 0.746659 AGCCAACTTCACTTTGGTGC 59.253 50.000 3.20 0.00 44.77 5.01
284 285 1.067516 CCAGCCAACTTCACTTTGGTG 59.932 52.381 3.20 0.00 44.77 4.17
285 286 1.402787 CCAGCCAACTTCACTTTGGT 58.597 50.000 3.20 0.00 44.77 3.67
286 287 0.675633 CCCAGCCAACTTCACTTTGG 59.324 55.000 0.00 0.00 45.60 3.28
287 288 0.032540 GCCCAGCCAACTTCACTTTG 59.967 55.000 0.00 0.00 0.00 2.77
288 289 1.455383 CGCCCAGCCAACTTCACTTT 61.455 55.000 0.00 0.00 0.00 2.66
289 290 1.898574 CGCCCAGCCAACTTCACTT 60.899 57.895 0.00 0.00 0.00 3.16
290 291 2.281761 CGCCCAGCCAACTTCACT 60.282 61.111 0.00 0.00 0.00 3.41
291 292 3.365265 CCGCCCAGCCAACTTCAC 61.365 66.667 0.00 0.00 0.00 3.18
312 313 4.899239 CCACGAGGCCGGCTCATC 62.899 72.222 28.56 20.18 40.78 2.92
320 321 4.681978 AAGCACGACCACGAGGCC 62.682 66.667 0.00 0.00 41.28 5.19
321 322 3.414700 CAAGCACGACCACGAGGC 61.415 66.667 0.00 0.00 42.66 4.70
322 323 3.414700 GCAAGCACGACCACGAGG 61.415 66.667 0.00 0.00 42.66 4.63
323 324 3.767230 CGCAAGCACGACCACGAG 61.767 66.667 0.00 0.00 42.66 4.18
324 325 4.273257 TCGCAAGCACGACCACGA 62.273 61.111 0.00 0.00 37.09 4.35
330 331 1.716760 AAAAACGTCGCAAGCACGA 59.283 47.368 18.63 0.00 41.25 4.35
331 332 4.278609 AAAAACGTCGCAAGCACG 57.721 50.000 12.88 12.88 43.24 5.34
345 346 2.481795 GCTTCTTCAGCTGTGGCAAAAA 60.482 45.455 14.67 0.00 46.27 1.94
346 347 1.067516 GCTTCTTCAGCTGTGGCAAAA 59.932 47.619 14.67 0.00 46.27 2.44
347 348 0.670162 GCTTCTTCAGCTGTGGCAAA 59.330 50.000 14.67 0.00 46.27 3.68
348 349 2.334307 GCTTCTTCAGCTGTGGCAA 58.666 52.632 14.67 0.00 46.27 4.52
349 350 4.069869 GCTTCTTCAGCTGTGGCA 57.930 55.556 14.67 0.00 46.27 4.92
356 357 3.204418 GCCATGGGCTTCTTCAGC 58.796 61.111 15.13 0.00 46.69 4.26
365 366 3.589881 GCTGTCATCGCCATGGGC 61.590 66.667 15.13 4.92 46.75 5.36
366 367 1.721664 CTTGCTGTCATCGCCATGGG 61.722 60.000 15.13 3.69 0.00 4.00
367 368 1.725665 CTTGCTGTCATCGCCATGG 59.274 57.895 7.63 7.63 0.00 3.66
368 369 1.063649 GCTTGCTGTCATCGCCATG 59.936 57.895 0.00 0.00 0.00 3.66
369 370 0.178767 TAGCTTGCTGTCATCGCCAT 59.821 50.000 5.26 0.00 0.00 4.40
370 371 0.460811 CTAGCTTGCTGTCATCGCCA 60.461 55.000 5.26 0.00 0.00 5.69
371 372 1.156645 CCTAGCTTGCTGTCATCGCC 61.157 60.000 5.26 0.00 0.00 5.54
372 373 1.156645 CCCTAGCTTGCTGTCATCGC 61.157 60.000 5.26 0.00 0.00 4.58
373 374 0.176680 ACCCTAGCTTGCTGTCATCG 59.823 55.000 5.26 0.00 0.00 3.84
374 375 2.284190 GAACCCTAGCTTGCTGTCATC 58.716 52.381 5.26 0.00 0.00 2.92
375 376 1.406069 CGAACCCTAGCTTGCTGTCAT 60.406 52.381 5.26 0.00 0.00 3.06
376 377 0.037326 CGAACCCTAGCTTGCTGTCA 60.037 55.000 5.26 0.00 0.00 3.58
377 378 0.037232 ACGAACCCTAGCTTGCTGTC 60.037 55.000 5.26 0.00 0.00 3.51
378 379 1.263356 TACGAACCCTAGCTTGCTGT 58.737 50.000 5.26 0.00 0.00 4.40
379 380 2.604046 ATACGAACCCTAGCTTGCTG 57.396 50.000 5.26 0.00 0.00 4.41
380 381 2.420129 CCAATACGAACCCTAGCTTGCT 60.420 50.000 0.00 0.00 0.00 3.91
381 382 1.940613 CCAATACGAACCCTAGCTTGC 59.059 52.381 0.00 0.00 0.00 4.01
382 383 2.561569 CCCAATACGAACCCTAGCTTG 58.438 52.381 0.00 0.00 0.00 4.01
383 384 1.134189 GCCCAATACGAACCCTAGCTT 60.134 52.381 0.00 0.00 0.00 3.74
384 385 0.468648 GCCCAATACGAACCCTAGCT 59.531 55.000 0.00 0.00 0.00 3.32
385 386 0.878961 CGCCCAATACGAACCCTAGC 60.879 60.000 0.00 0.00 0.00 3.42
386 387 0.249741 CCGCCCAATACGAACCCTAG 60.250 60.000 0.00 0.00 0.00 3.02
387 388 1.824658 CCGCCCAATACGAACCCTA 59.175 57.895 0.00 0.00 0.00 3.53
388 389 2.587889 CCGCCCAATACGAACCCT 59.412 61.111 0.00 0.00 0.00 4.34
389 390 3.206957 GCCGCCCAATACGAACCC 61.207 66.667 0.00 0.00 0.00 4.11
390 391 3.569690 CGCCGCCCAATACGAACC 61.570 66.667 0.00 0.00 0.00 3.62
391 392 3.569690 CCGCCGCCCAATACGAAC 61.570 66.667 0.00 0.00 0.00 3.95
392 393 3.726595 CTCCGCCGCCCAATACGAA 62.727 63.158 0.00 0.00 0.00 3.85
393 394 4.215742 CTCCGCCGCCCAATACGA 62.216 66.667 0.00 0.00 0.00 3.43
395 396 3.809374 CTCCTCCGCCGCCCAATAC 62.809 68.421 0.00 0.00 0.00 1.89
396 397 3.546543 CTCCTCCGCCGCCCAATA 61.547 66.667 0.00 0.00 0.00 1.90
403 404 1.945354 TAGAGTTTGCTCCTCCGCCG 61.945 60.000 0.00 0.00 42.59 6.46
404 405 0.460459 GTAGAGTTTGCTCCTCCGCC 60.460 60.000 0.00 0.00 42.59 6.13
405 406 0.802607 CGTAGAGTTTGCTCCTCCGC 60.803 60.000 0.00 0.00 42.59 5.54
406 407 0.526662 ACGTAGAGTTTGCTCCTCCG 59.473 55.000 0.00 0.00 42.59 4.63
407 408 1.272769 ACACGTAGAGTTTGCTCCTCC 59.727 52.381 0.00 0.00 42.59 4.30
408 409 2.329379 CACACGTAGAGTTTGCTCCTC 58.671 52.381 0.00 0.00 42.59 3.71
409 410 1.000955 CCACACGTAGAGTTTGCTCCT 59.999 52.381 0.00 0.00 42.59 3.69
410 411 1.000506 TCCACACGTAGAGTTTGCTCC 59.999 52.381 0.00 0.00 42.59 4.70
411 412 2.059541 GTCCACACGTAGAGTTTGCTC 58.940 52.381 0.00 0.00 41.94 4.26
412 413 1.687123 AGTCCACACGTAGAGTTTGCT 59.313 47.619 0.00 0.00 0.00 3.91
413 414 2.150397 AGTCCACACGTAGAGTTTGC 57.850 50.000 0.00 0.00 0.00 3.68
414 415 3.454375 ACAAGTCCACACGTAGAGTTTG 58.546 45.455 0.00 0.00 0.00 2.93
415 416 3.814005 ACAAGTCCACACGTAGAGTTT 57.186 42.857 0.00 0.00 0.00 2.66
416 417 3.814005 AACAAGTCCACACGTAGAGTT 57.186 42.857 0.00 0.00 0.00 3.01
417 418 3.454375 CAAACAAGTCCACACGTAGAGT 58.546 45.455 0.00 0.00 0.00 3.24
418 419 2.800544 CCAAACAAGTCCACACGTAGAG 59.199 50.000 0.00 0.00 0.00 2.43
419 420 2.828877 CCAAACAAGTCCACACGTAGA 58.171 47.619 0.00 0.00 0.00 2.59
420 421 1.263217 GCCAAACAAGTCCACACGTAG 59.737 52.381 0.00 0.00 0.00 3.51
421 422 1.301423 GCCAAACAAGTCCACACGTA 58.699 50.000 0.00 0.00 0.00 3.57
422 423 1.711060 CGCCAAACAAGTCCACACGT 61.711 55.000 0.00 0.00 0.00 4.49
423 424 1.010125 CGCCAAACAAGTCCACACG 60.010 57.895 0.00 0.00 0.00 4.49
424 425 0.307760 CTCGCCAAACAAGTCCACAC 59.692 55.000 0.00 0.00 0.00 3.82
425 426 0.179234 TCTCGCCAAACAAGTCCACA 59.821 50.000 0.00 0.00 0.00 4.17
426 427 1.264288 CTTCTCGCCAAACAAGTCCAC 59.736 52.381 0.00 0.00 0.00 4.02
427 428 1.593196 CTTCTCGCCAAACAAGTCCA 58.407 50.000 0.00 0.00 0.00 4.02
428 429 0.238553 GCTTCTCGCCAAACAAGTCC 59.761 55.000 0.00 0.00 0.00 3.85
429 430 0.110644 CGCTTCTCGCCAAACAAGTC 60.111 55.000 0.00 0.00 34.21 3.01
430 431 1.507141 CCGCTTCTCGCCAAACAAGT 61.507 55.000 0.00 0.00 36.73 3.16
431 432 1.207593 CCGCTTCTCGCCAAACAAG 59.792 57.895 0.00 0.00 36.73 3.16
432 433 0.605319 ATCCGCTTCTCGCCAAACAA 60.605 50.000 0.00 0.00 36.73 2.83
433 434 1.003839 ATCCGCTTCTCGCCAAACA 60.004 52.632 0.00 0.00 36.73 2.83
434 435 1.019278 TCATCCGCTTCTCGCCAAAC 61.019 55.000 0.00 0.00 36.73 2.93
435 436 0.740868 CTCATCCGCTTCTCGCCAAA 60.741 55.000 0.00 0.00 36.73 3.28
436 437 1.153568 CTCATCCGCTTCTCGCCAA 60.154 57.895 0.00 0.00 36.73 4.52
437 438 2.496341 CTCATCCGCTTCTCGCCA 59.504 61.111 0.00 0.00 36.73 5.69
438 439 2.964389 GCTCATCCGCTTCTCGCC 60.964 66.667 0.00 0.00 36.73 5.54
439 440 2.964389 GGCTCATCCGCTTCTCGC 60.964 66.667 0.00 0.00 36.73 5.03
440 441 1.880340 GTGGCTCATCCGCTTCTCG 60.880 63.158 0.00 0.00 42.12 4.04
441 442 1.522580 GGTGGCTCATCCGCTTCTC 60.523 63.158 0.00 0.00 44.77 2.87
442 443 2.586792 GGTGGCTCATCCGCTTCT 59.413 61.111 0.00 0.00 44.77 2.85
443 444 2.514824 GGGTGGCTCATCCGCTTC 60.515 66.667 0.00 0.00 44.77 3.86
444 445 2.543067 GAAGGGTGGCTCATCCGCTT 62.543 60.000 0.00 0.00 44.77 4.68
445 446 3.011517 AAGGGTGGCTCATCCGCT 61.012 61.111 0.00 0.00 44.77 5.52
446 447 2.514824 GAAGGGTGGCTCATCCGC 60.515 66.667 0.00 0.00 40.09 5.54
447 448 2.190578 GGAAGGGTGGCTCATCCG 59.809 66.667 0.00 0.00 40.09 4.18
448 449 1.988982 GAGGGAAGGGTGGCTCATCC 61.989 65.000 0.00 0.00 34.24 3.51
449 450 1.529309 GAGGGAAGGGTGGCTCATC 59.471 63.158 0.00 0.00 0.00 2.92
450 451 2.003548 GGAGGGAAGGGTGGCTCAT 61.004 63.158 0.00 0.00 0.00 2.90
451 452 1.821966 TAGGAGGGAAGGGTGGCTCA 61.822 60.000 0.00 0.00 0.00 4.26
452 453 0.400670 ATAGGAGGGAAGGGTGGCTC 60.401 60.000 0.00 0.00 0.00 4.70
453 454 0.046397 AATAGGAGGGAAGGGTGGCT 59.954 55.000 0.00 0.00 0.00 4.75
454 455 0.927029 AAATAGGAGGGAAGGGTGGC 59.073 55.000 0.00 0.00 0.00 5.01
455 456 4.873724 TTTAAATAGGAGGGAAGGGTGG 57.126 45.455 0.00 0.00 0.00 4.61
456 457 5.656859 CCTTTTTAAATAGGAGGGAAGGGTG 59.343 44.000 17.18 0.00 33.13 4.61
457 458 5.558339 TCCTTTTTAAATAGGAGGGAAGGGT 59.442 40.000 19.85 0.00 35.66 4.34
458 459 5.892119 GTCCTTTTTAAATAGGAGGGAAGGG 59.108 44.000 23.06 0.87 41.09 3.95
459 460 5.589050 CGTCCTTTTTAAATAGGAGGGAAGG 59.411 44.000 26.79 17.19 41.09 3.46
460 461 6.093633 CACGTCCTTTTTAAATAGGAGGGAAG 59.906 42.308 32.38 23.61 45.96 3.46
461 462 5.941647 CACGTCCTTTTTAAATAGGAGGGAA 59.058 40.000 32.38 12.88 45.96 3.97
462 463 5.493809 CACGTCCTTTTTAAATAGGAGGGA 58.506 41.667 32.38 15.05 45.96 4.20
463 464 4.638865 CCACGTCCTTTTTAAATAGGAGGG 59.361 45.833 32.38 25.16 45.96 4.30
464 465 4.095932 GCCACGTCCTTTTTAAATAGGAGG 59.904 45.833 29.97 29.97 46.68 4.30
465 466 4.698304 TGCCACGTCCTTTTTAAATAGGAG 59.302 41.667 23.06 18.81 41.09 3.69
466 467 4.653868 TGCCACGTCCTTTTTAAATAGGA 58.346 39.130 19.85 19.85 38.22 2.94
467 468 5.339990 CATGCCACGTCCTTTTTAAATAGG 58.660 41.667 16.26 16.26 0.00 2.57
468 469 5.124776 TCCATGCCACGTCCTTTTTAAATAG 59.875 40.000 0.00 0.00 0.00 1.73
469 470 5.010933 TCCATGCCACGTCCTTTTTAAATA 58.989 37.500 0.00 0.00 0.00 1.40
470 471 3.829601 TCCATGCCACGTCCTTTTTAAAT 59.170 39.130 0.00 0.00 0.00 1.40
471 472 3.004944 GTCCATGCCACGTCCTTTTTAAA 59.995 43.478 0.00 0.00 0.00 1.52
472 473 2.554893 GTCCATGCCACGTCCTTTTTAA 59.445 45.455 0.00 0.00 0.00 1.52
473 474 2.156098 GTCCATGCCACGTCCTTTTTA 58.844 47.619 0.00 0.00 0.00 1.52
474 475 0.958822 GTCCATGCCACGTCCTTTTT 59.041 50.000 0.00 0.00 0.00 1.94
475 476 0.179004 TGTCCATGCCACGTCCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
476 477 0.889186 GTGTCCATGCCACGTCCTTT 60.889 55.000 0.00 0.00 0.00 3.11
491 492 3.050619 CACGTCAACCACTAGAAGTGTC 58.949 50.000 0.00 0.00 44.50 3.67
494 495 2.223971 CCACACGTCAACCACTAGAAGT 60.224 50.000 0.00 0.00 0.00 3.01
502 503 4.572571 GGGCCCACACGTCAACCA 62.573 66.667 19.95 0.00 0.00 3.67
503 504 4.572571 TGGGCCCACACGTCAACC 62.573 66.667 24.45 0.00 0.00 3.77
505 506 2.063015 ATCTTGGGCCCACACGTCAA 62.063 55.000 28.70 7.00 0.00 3.18
509 510 2.556840 ATCCATCTTGGGCCCACACG 62.557 60.000 28.70 16.61 38.32 4.49
519 520 1.396653 GGCTCCAACCATCCATCTTG 58.603 55.000 0.00 0.00 0.00 3.02
520 521 0.107017 CGGCTCCAACCATCCATCTT 60.107 55.000 0.00 0.00 0.00 2.40
523 524 1.224592 GTCGGCTCCAACCATCCAT 59.775 57.895 0.00 0.00 0.00 3.41
554 556 2.045242 CGTCCTCCCGGAGTCTGA 60.045 66.667 13.62 0.82 40.84 3.27
575 577 1.481683 GACGCGAGACAAACACGTC 59.518 57.895 15.93 0.00 45.10 4.34
576 578 1.947642 GGACGCGAGACAAACACGT 60.948 57.895 15.93 0.00 40.11 4.49
582 593 1.374125 CCACATGGACGCGAGACAA 60.374 57.895 15.93 0.00 37.39 3.18
583 594 2.261361 CCACATGGACGCGAGACA 59.739 61.111 15.93 9.06 37.39 3.41
595 606 2.560542 TGGCTAAAATTTGCGTCCACAT 59.439 40.909 0.00 0.00 0.00 3.21
599 610 3.569250 TTCTGGCTAAAATTTGCGTCC 57.431 42.857 0.00 0.00 0.00 4.79
610 621 5.243507 TCTGTTTGAATGCATTTCTGGCTAA 59.756 36.000 14.33 0.78 35.23 3.09
611 622 4.766373 TCTGTTTGAATGCATTTCTGGCTA 59.234 37.500 14.33 0.00 35.23 3.93
616 638 4.341806 TGGTGTCTGTTTGAATGCATTTCT 59.658 37.500 14.33 0.00 35.23 2.52
622 644 3.779759 TGTTTGGTGTCTGTTTGAATGC 58.220 40.909 0.00 0.00 0.00 3.56
624 646 4.097892 GGTCTGTTTGGTGTCTGTTTGAAT 59.902 41.667 0.00 0.00 0.00 2.57
626 648 3.013921 GGTCTGTTTGGTGTCTGTTTGA 58.986 45.455 0.00 0.00 0.00 2.69
633 655 4.215613 GGTAGATTTGGTCTGTTTGGTGTC 59.784 45.833 0.00 0.00 37.83 3.67
641 663 2.308570 TGCATGGGTAGATTTGGTCTGT 59.691 45.455 0.00 0.00 37.83 3.41
643 665 3.202818 TCATGCATGGGTAGATTTGGTCT 59.797 43.478 25.97 0.00 41.11 3.85
656 678 1.066752 CCCAACGCATCATGCATGG 59.933 57.895 25.97 20.07 45.36 3.66
657 679 1.590525 GCCCAACGCATCATGCATG 60.591 57.895 21.07 21.07 45.36 4.06
662 684 2.361104 AACGGCCCAACGCATCAT 60.361 55.556 0.00 0.00 40.31 2.45
664 686 4.776647 GCAACGGCCCAACGCATC 62.777 66.667 0.00 0.00 40.31 3.91
705 737 1.584483 CATTTGCTCCGCGTGCATC 60.584 57.895 21.36 0.17 40.34 3.91
707 739 2.977456 ACATTTGCTCCGCGTGCA 60.977 55.556 17.88 17.88 38.80 4.57
708 740 2.502510 CACATTTGCTCCGCGTGC 60.503 61.111 4.92 10.05 0.00 5.34
710 742 2.667318 CGACACATTTGCTCCGCGT 61.667 57.895 4.92 0.00 0.00 6.01
717 749 0.387239 GCCAACTCCGACACATTTGC 60.387 55.000 0.00 0.00 0.00 3.68
780 844 9.940518 CGTTTACGTCTTTTGTTTAATTTTGTT 57.059 25.926 0.00 0.00 34.11 2.83
781 845 8.103320 GCGTTTACGTCTTTTGTTTAATTTTGT 58.897 29.630 0.00 0.00 42.22 2.83
782 846 8.102716 TGCGTTTACGTCTTTTGTTTAATTTTG 58.897 29.630 0.00 0.00 42.22 2.44
783 847 8.103320 GTGCGTTTACGTCTTTTGTTTAATTTT 58.897 29.630 0.00 0.00 42.22 1.82
784 848 7.253717 GGTGCGTTTACGTCTTTTGTTTAATTT 60.254 33.333 0.00 0.00 42.22 1.82
785 849 6.196910 GGTGCGTTTACGTCTTTTGTTTAATT 59.803 34.615 0.00 0.00 42.22 1.40
786 850 5.682422 GGTGCGTTTACGTCTTTTGTTTAAT 59.318 36.000 0.00 0.00 42.22 1.40
798 862 0.952010 GATGGGTGGTGCGTTTACGT 60.952 55.000 4.05 0.00 42.22 3.57
841 908 1.689959 CGCATCACTTGGTTGCTTTC 58.310 50.000 0.00 0.00 34.23 2.62
941 1010 4.261801 GGCAAAGGAGTATGTGTATGTGT 58.738 43.478 0.00 0.00 0.00 3.72
942 1011 4.094887 GTGGCAAAGGAGTATGTGTATGTG 59.905 45.833 0.00 0.00 0.00 3.21
996 1068 2.700897 GACGGGGAGCATATATAGGCAT 59.299 50.000 20.53 6.60 35.07 4.40
1051 1123 1.861575 GAGAGGTTTTGATCGATCGGC 59.138 52.381 20.03 8.58 0.00 5.54
1089 1161 3.119101 GGTGTGGAGTGGTAGTAGTGATG 60.119 52.174 0.00 0.00 0.00 3.07
1090 1162 3.097614 GGTGTGGAGTGGTAGTAGTGAT 58.902 50.000 0.00 0.00 0.00 3.06
1091 1163 2.109480 AGGTGTGGAGTGGTAGTAGTGA 59.891 50.000 0.00 0.00 0.00 3.41
1094 1166 3.018149 GAGAGGTGTGGAGTGGTAGTAG 58.982 54.545 0.00 0.00 0.00 2.57
1099 1171 1.464376 CGTGAGAGGTGTGGAGTGGT 61.464 60.000 0.00 0.00 0.00 4.16
1102 1174 4.923068 TCGTGAGAGGTGTGGAGT 57.077 55.556 0.00 0.00 34.84 3.85
1114 1186 2.025719 CTAGCGGAGATGCTCGTGA 58.974 57.895 0.00 0.00 45.87 4.35
1561 1636 3.554692 GCGACGGCGACTGGAATG 61.555 66.667 18.90 0.00 40.82 2.67
1585 1663 4.933563 TGCTGTTGCTGGAGCGCA 62.934 61.111 11.47 0.00 45.83 6.09
1597 1675 4.681978 GCGACCGGAACCTGCTGT 62.682 66.667 9.46 0.00 0.00 4.40
1730 1852 1.857217 CGCGACTGGAAGAATGATCTG 59.143 52.381 0.00 0.00 35.59 2.90
1731 1853 1.478510 ACGCGACTGGAAGAATGATCT 59.521 47.619 15.93 0.00 37.43 2.75
1732 1854 1.590238 CACGCGACTGGAAGAATGATC 59.410 52.381 15.93 0.00 37.43 2.92
1930 2079 1.550524 TCGAACAAGCAGCTCCATAGT 59.449 47.619 0.00 0.00 0.00 2.12
1968 2124 1.852895 GCGCGACTATCTACAACTTGG 59.147 52.381 12.10 0.00 0.00 3.61
1994 2173 2.012673 CTCTGCTTCTTCCCAAATCGG 58.987 52.381 0.00 0.00 0.00 4.18
2031 2211 9.784680 AACTCGACAAATACTAGTACTACAATG 57.215 33.333 4.31 1.46 0.00 2.82
2033 2213 8.454106 GGAACTCGACAAATACTAGTACTACAA 58.546 37.037 4.31 0.00 0.00 2.41
2036 2216 6.258727 CGGGAACTCGACAAATACTAGTACTA 59.741 42.308 4.31 1.89 0.00 1.82
2037 2217 5.065731 CGGGAACTCGACAAATACTAGTACT 59.934 44.000 4.31 0.00 0.00 2.73
2041 2222 3.129988 ACCGGGAACTCGACAAATACTAG 59.870 47.826 6.32 0.00 0.00 2.57
2052 2233 2.738013 AAGTAGAAACCGGGAACTCG 57.262 50.000 6.32 0.00 0.00 4.18
2246 2440 3.701532 TTGTTTACAAAGCCGTCCAAG 57.298 42.857 0.00 0.00 32.11 3.61
2260 2454 5.474189 CCGTAAGTGGAGGGATTTTTGTTTA 59.526 40.000 0.00 0.00 0.00 2.01
2304 2498 9.303537 GATTAGTGCGTAGGAATAGGATAATTC 57.696 37.037 0.00 0.00 35.51 2.17
2308 2502 5.655532 GGGATTAGTGCGTAGGAATAGGATA 59.344 44.000 0.00 0.00 25.85 2.59
2310 2504 3.830755 GGGATTAGTGCGTAGGAATAGGA 59.169 47.826 0.00 0.00 25.85 2.94
2312 2506 6.585695 TTAGGGATTAGTGCGTAGGAATAG 57.414 41.667 0.00 0.00 25.85 1.73
2313 2507 6.552350 AGTTTAGGGATTAGTGCGTAGGAATA 59.448 38.462 0.00 0.00 0.00 1.75
2314 2508 5.365895 AGTTTAGGGATTAGTGCGTAGGAAT 59.634 40.000 0.00 0.00 0.00 3.01
2315 2509 4.713321 AGTTTAGGGATTAGTGCGTAGGAA 59.287 41.667 0.00 0.00 0.00 3.36
2329 2677 4.164981 TGGAGTTGCTCTTAGTTTAGGGA 58.835 43.478 0.00 0.00 0.00 4.20
2330 2678 4.508662 CTGGAGTTGCTCTTAGTTTAGGG 58.491 47.826 0.00 0.00 0.00 3.53
2333 2681 3.585862 CGCTGGAGTTGCTCTTAGTTTA 58.414 45.455 0.00 0.00 0.00 2.01
2335 2683 1.338200 CCGCTGGAGTTGCTCTTAGTT 60.338 52.381 0.00 0.00 0.00 2.24
2336 2684 0.247736 CCGCTGGAGTTGCTCTTAGT 59.752 55.000 0.00 0.00 0.00 2.24
2338 2686 0.246635 GACCGCTGGAGTTGCTCTTA 59.753 55.000 1.50 0.00 0.00 2.10
2375 4901 4.313170 CGTTGATAGCGTTCGTATACGTAC 59.687 45.833 23.67 22.26 43.22 3.67
2378 4904 3.283256 ACGTTGATAGCGTTCGTATACG 58.717 45.455 19.23 19.23 44.09 3.06
2425 4951 6.950842 TGCCATGATCGGAGATAAATAGATT 58.049 36.000 0.00 0.00 45.12 2.40
2433 4959 3.496331 TGTACTGCCATGATCGGAGATA 58.504 45.455 0.00 0.00 45.12 1.98
2438 4964 0.930310 CGTTGTACTGCCATGATCGG 59.070 55.000 0.00 0.00 0.00 4.18
2440 4966 4.211374 GGTATTCGTTGTACTGCCATGATC 59.789 45.833 0.00 0.00 0.00 2.92
2485 5011 4.023980 TCGTCAGGTGGTCTATGAATCTT 58.976 43.478 0.00 0.00 0.00 2.40
2490 5016 1.092348 CGTCGTCAGGTGGTCTATGA 58.908 55.000 0.00 0.00 0.00 2.15
2503 5029 1.069432 TCAGTGCTTGTAGTCGTCGTC 60.069 52.381 0.00 0.00 0.00 4.20
2504 5030 0.949397 TCAGTGCTTGTAGTCGTCGT 59.051 50.000 0.00 0.00 0.00 4.34
2515 5041 2.128035 CTTCGACTCGTTTCAGTGCTT 58.872 47.619 0.00 0.00 0.00 3.91
2627 5153 1.228063 CTGCTCTGGTGTGCTGGTT 60.228 57.895 0.00 0.00 34.18 3.67
2634 5160 2.281070 CGGTTGCTGCTCTGGTGT 60.281 61.111 0.00 0.00 0.00 4.16
2681 5207 3.071023 TCATGTATCTTCGGGTTGGATCC 59.929 47.826 4.20 4.20 0.00 3.36
2689 5215 4.288531 GTCTACGTTCATGTATCTTCGGG 58.711 47.826 0.00 0.00 0.00 5.14
2697 5223 3.907788 CGTTGTTCGTCTACGTTCATGTA 59.092 43.478 0.00 0.00 39.58 2.29
2741 5267 3.203716 GTCTCCGGCGGATTTATCTTTT 58.796 45.455 31.23 0.00 0.00 2.27
2749 5275 2.264794 GTGTGTCTCCGGCGGATT 59.735 61.111 31.23 0.00 0.00 3.01
2812 5338 3.555527 ATAAAGGTCTTCCCGCCTAAC 57.444 47.619 0.00 0.00 38.74 2.34
2813 5339 3.118149 GGAATAAAGGTCTTCCCGCCTAA 60.118 47.826 0.00 0.00 38.74 2.69
2843 5369 3.371063 GAGACGACGGTGGCTCCA 61.371 66.667 6.39 0.00 35.57 3.86
2875 5401 5.669164 TCACTTTTGCTAGGGTTTTTGTT 57.331 34.783 0.00 0.00 0.00 2.83
2879 5405 6.538945 TTCTTTCACTTTTGCTAGGGTTTT 57.461 33.333 0.00 0.00 0.00 2.43
2894 5420 4.741676 TCCGTTTCTAGTCGTTTCTTTCAC 59.258 41.667 0.00 0.00 0.00 3.18
2962 5488 2.759973 CTCTGCGGTGGCCCTAGA 60.760 66.667 0.00 0.00 38.85 2.43
2975 5501 2.125350 GCAAGTCCGCCTCCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
3000 5526 1.671742 GGTTTCTGCCTCCTGTCGA 59.328 57.895 0.00 0.00 0.00 4.20
3005 5531 3.593780 AGAAATTAGGGTTTCTGCCTCCT 59.406 43.478 1.44 0.00 44.46 3.69
3023 5549 2.639839 CTCCTCCTCCTCCACAAAGAAA 59.360 50.000 0.00 0.00 0.00 2.52
3026 5553 0.908198 CCTCCTCCTCCTCCACAAAG 59.092 60.000 0.00 0.00 0.00 2.77
3046 5575 1.448013 GAAGCCTTTCTAGCCGCGT 60.448 57.895 4.92 0.00 0.00 6.01
3047 5576 2.517450 CGAAGCCTTTCTAGCCGCG 61.517 63.158 0.00 0.00 0.00 6.46
3060 5589 1.956620 GCTACGTTGGCAGACGAAGC 61.957 60.000 22.48 10.89 45.47 3.86
3061 5590 1.352156 GGCTACGTTGGCAGACGAAG 61.352 60.000 22.48 5.64 45.47 3.79
3062 5591 1.373748 GGCTACGTTGGCAGACGAA 60.374 57.895 22.48 0.00 45.47 3.85
3063 5592 1.812686 AAGGCTACGTTGGCAGACGA 61.813 55.000 23.89 9.97 45.47 4.20
3065 5594 0.320421 TGAAGGCTACGTTGGCAGAC 60.320 55.000 23.89 14.68 34.73 3.51
3066 5595 0.613260 ATGAAGGCTACGTTGGCAGA 59.387 50.000 23.89 8.68 34.73 4.26
3067 5596 2.309528 TATGAAGGCTACGTTGGCAG 57.690 50.000 23.89 2.32 34.73 4.85
3068 5597 2.772077 TTATGAAGGCTACGTTGGCA 57.228 45.000 23.89 5.48 34.73 4.92
3069 5598 5.941948 ATAATTATGAAGGCTACGTTGGC 57.058 39.130 15.44 15.44 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.