Multiple sequence alignment - TraesCS5B01G310700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G310700 chr5B 100.000 5413 0 0 1 5413 492614167 492619579 0.000000e+00 9997.0
1 TraesCS5B01G310700 chr5B 95.312 64 3 0 5350 5413 493481082 493481019 9.590000e-18 102.0
2 TraesCS5B01G310700 chr5B 84.000 100 10 6 5320 5413 494033766 494033667 2.080000e-14 91.6
3 TraesCS5B01G310700 chr5D 92.200 2295 107 40 544 2810 410426355 410428605 0.000000e+00 3181.0
4 TraesCS5B01G310700 chr5D 87.740 1982 180 28 2825 4797 410428666 410430593 0.000000e+00 2255.0
5 TraesCS5B01G310700 chr5D 81.931 321 31 16 5101 5413 410443982 410444283 4.190000e-61 246.0
6 TraesCS5B01G310700 chr5D 93.860 114 7 0 4809 4922 410442647 410442760 7.210000e-39 172.0
7 TraesCS5B01G310700 chr5D 95.714 70 3 0 5344 5413 411845873 411845804 4.430000e-21 113.0
8 TraesCS5B01G310700 chr5D 95.312 64 3 0 5350 5413 410952921 410952858 9.590000e-18 102.0
9 TraesCS5B01G310700 chr5D 82.645 121 11 7 5302 5413 411743115 411742996 1.240000e-16 99.0
10 TraesCS5B01G310700 chr5A 92.499 1733 99 17 3062 4784 522063629 522065340 0.000000e+00 2451.0
11 TraesCS5B01G310700 chr5A 93.957 1208 49 12 1861 3064 522062397 522063584 0.000000e+00 1805.0
12 TraesCS5B01G310700 chr5A 90.741 594 46 8 1244 1834 522061684 522062271 0.000000e+00 784.0
13 TraesCS5B01G310700 chr5A 88.153 287 19 10 546 822 522060864 522061145 1.450000e-85 327.0
14 TraesCS5B01G310700 chr5A 83.072 319 29 14 5102 5413 522066432 522066732 3.210000e-67 267.0
15 TraesCS5B01G310700 chr5A 95.714 70 3 0 5344 5413 523616327 523616258 4.430000e-21 113.0
16 TraesCS5B01G310700 chr5A 95.312 64 3 0 5350 5413 522883354 522883291 9.590000e-18 102.0
17 TraesCS5B01G310700 chr5A 84.000 100 10 6 5320 5413 523588015 523587916 2.080000e-14 91.6
18 TraesCS5B01G310700 chr5A 97.222 36 1 0 5037 5072 522066388 522066423 1.630000e-05 62.1
19 TraesCS5B01G310700 chr7B 84.680 1077 106 31 2512 3561 707865658 707866702 0.000000e+00 1020.0
20 TraesCS5B01G310700 chr2D 82.573 1096 117 36 2512 3561 301375020 301376087 0.000000e+00 898.0
21 TraesCS5B01G310700 chr2D 87.293 362 36 2 117 478 8217030 8216679 6.530000e-109 405.0
22 TraesCS5B01G310700 chr2D 87.582 306 25 1 117 422 646270811 646271103 5.190000e-90 342.0
23 TraesCS5B01G310700 chr2D 86.957 92 12 0 596 687 99324809 99324718 2.670000e-18 104.0
24 TraesCS5B01G310700 chr7D 88.860 386 31 6 117 491 25169922 25170306 1.060000e-126 464.0
25 TraesCS5B01G310700 chr7D 88.798 366 30 5 117 472 591832104 591832468 6.440000e-119 438.0
26 TraesCS5B01G310700 chr2A 89.247 372 30 4 117 478 702848541 702848912 1.780000e-124 457.0
27 TraesCS5B01G310700 chr2A 91.304 184 15 1 114 296 702848723 702848906 3.240000e-62 250.0
28 TraesCS5B01G310700 chr3A 87.887 388 34 7 117 493 736811822 736812207 1.380000e-120 444.0
29 TraesCS5B01G310700 chr3A 87.887 388 34 7 117 493 736836727 736837112 1.380000e-120 444.0
30 TraesCS5B01G310700 chr3A 89.674 184 18 1 114 296 736812003 736812186 3.260000e-57 233.0
31 TraesCS5B01G310700 chrUn 83.200 375 26 12 111 473 96681925 96681576 5.270000e-80 309.0
32 TraesCS5B01G310700 chrUn 83.401 247 27 7 259 492 210731913 210732158 3.280000e-52 217.0
33 TraesCS5B01G310700 chrUn 83.401 247 27 7 259 492 210736541 210736786 3.280000e-52 217.0
34 TraesCS5B01G310700 chrUn 83.539 243 26 7 263 492 210727290 210727531 1.180000e-51 215.0
35 TraesCS5B01G310700 chrUn 83.333 246 28 7 259 492 210754096 210754340 1.180000e-51 215.0
36 TraesCS5B01G310700 chrUn 82.996 247 28 7 259 492 210730756 210731001 1.530000e-50 211.0
37 TraesCS5B01G310700 chrUn 82.591 247 29 7 259 492 210729599 210729844 7.110000e-49 206.0
38 TraesCS5B01G310700 chr7A 86.853 251 28 3 2510 2760 31566126 31565881 5.340000e-70 276.0
39 TraesCS5B01G310700 chr3B 85.714 238 27 7 259 492 52021023 52021257 1.510000e-60 244.0
40 TraesCS5B01G310700 chr3B 91.346 104 9 0 3173 3276 1220798 1220901 5.650000e-30 143.0
41 TraesCS5B01G310700 chr3B 91.346 104 9 0 3173 3276 1323768 1323871 5.650000e-30 143.0
42 TraesCS5B01G310700 chr4A 86.758 219 25 4 259 475 242038543 242038759 1.950000e-59 241.0
43 TraesCS5B01G310700 chr2B 82.645 242 34 3 2825 3066 140523531 140523298 1.980000e-49 207.0
44 TraesCS5B01G310700 chr6D 85.965 114 16 0 1001 1114 471812511 471812624 7.360000e-24 122.0
45 TraesCS5B01G310700 chr6A 83.333 114 19 0 1001 1114 617838632 617838519 7.420000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G310700 chr5B 492614167 492619579 5412 False 9997.00 9997 100.000000 1 5413 1 chr5B.!!$F1 5412
1 TraesCS5B01G310700 chr5D 410426355 410430593 4238 False 2718.00 3181 89.970000 544 4797 2 chr5D.!!$F1 4253
2 TraesCS5B01G310700 chr5D 410442647 410444283 1636 False 209.00 246 87.895500 4809 5413 2 chr5D.!!$F2 604
3 TraesCS5B01G310700 chr5A 522060864 522066732 5868 False 949.35 2451 90.940667 546 5413 6 chr5A.!!$F1 4867
4 TraesCS5B01G310700 chr7B 707865658 707866702 1044 False 1020.00 1020 84.680000 2512 3561 1 chr7B.!!$F1 1049
5 TraesCS5B01G310700 chr2D 301375020 301376087 1067 False 898.00 898 82.573000 2512 3561 1 chr2D.!!$F1 1049
6 TraesCS5B01G310700 chrUn 210727290 210732158 4868 False 212.25 217 83.131750 259 492 4 chrUn.!!$F3 233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.327191 CCCTAGCCCCAGACCCTAAA 60.327 60.0 0.00 0.00 0.00 1.85 F
506 2644 0.599728 TTGTTCAAAATGCCGCCAGC 60.600 50.0 0.00 0.00 44.14 4.85 F
1231 3626 0.983905 GGTTTCCCCTCTCTCCCTCC 60.984 65.0 0.00 0.00 0.00 4.30 F
2231 4844 0.981183 TCCCTGTACCATGGTGTGAC 59.019 55.0 28.17 17.94 0.00 3.67 F
3800 7013 1.318576 CTGAGGTGGTGGTTTTGGAC 58.681 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 3974 0.032615 AACCCAACCAGTGAGCCAAA 60.033 50.0 0.00 0.0 0.00 3.28 R
1474 3975 0.032615 AAACCCAACCAGTGAGCCAA 60.033 50.0 0.00 0.0 0.00 4.52 R
2928 5591 0.179936 ATTAGCAGCTGAGGCCTGAC 59.820 55.0 20.43 0.0 39.73 3.51 R
3824 7037 0.539986 TATTCACCGTTGCCTCCTCC 59.460 55.0 0.00 0.0 0.00 4.30 R
4606 7822 0.181114 ACAAGAGGCTGCAACACTCA 59.819 50.0 12.68 0.0 33.76 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 6.550854 ACACTAAAAACCCTAAACCCTAAACC 59.449 38.462 0.00 0.00 0.00 3.27
129 130 2.885135 AACCCTAAACCCTAAACCCG 57.115 50.000 0.00 0.00 0.00 5.28
133 134 1.065199 CCTAAACCCTAAACCCGGGAC 60.065 57.143 32.02 0.00 44.90 4.46
135 136 1.151760 AAACCCTAAACCCGGGACTT 58.848 50.000 32.02 21.92 44.90 3.01
136 137 2.043307 AACCCTAAACCCGGGACTTA 57.957 50.000 32.02 21.86 44.90 2.24
141 142 2.743664 CCTAAACCCGGGACTTAAAACG 59.256 50.000 32.02 11.53 0.00 3.60
142 143 2.346766 AAACCCGGGACTTAAAACGT 57.653 45.000 32.02 0.00 0.00 3.99
143 144 1.882912 AACCCGGGACTTAAAACGTC 58.117 50.000 32.02 0.00 0.00 4.34
151 152 4.380839 GGACTTAAAACGTCCGAAACTC 57.619 45.455 0.00 0.00 41.29 3.01
152 153 4.053983 GGACTTAAAACGTCCGAAACTCT 58.946 43.478 0.00 0.00 41.29 3.24
153 154 5.222631 GGACTTAAAACGTCCGAAACTCTA 58.777 41.667 0.00 0.00 41.29 2.43
154 155 5.866092 GGACTTAAAACGTCCGAAACTCTAT 59.134 40.000 0.00 0.00 41.29 1.98
155 156 6.367149 GGACTTAAAACGTCCGAAACTCTATT 59.633 38.462 0.00 0.00 41.29 1.73
156 157 7.343614 ACTTAAAACGTCCGAAACTCTATTC 57.656 36.000 0.00 0.00 0.00 1.75
157 158 7.150640 ACTTAAAACGTCCGAAACTCTATTCT 58.849 34.615 0.00 0.00 0.00 2.40
160 161 7.578169 AAAACGTCCGAAACTCTATTCTAAG 57.422 36.000 0.00 0.00 0.00 2.18
161 162 5.893897 ACGTCCGAAACTCTATTCTAAGT 57.106 39.130 0.00 0.00 0.00 2.24
162 163 6.992063 ACGTCCGAAACTCTATTCTAAGTA 57.008 37.500 0.00 0.00 0.00 2.24
163 164 7.014092 ACGTCCGAAACTCTATTCTAAGTAG 57.986 40.000 0.00 0.00 0.00 2.57
165 166 7.766278 ACGTCCGAAACTCTATTCTAAGTAGTA 59.234 37.037 0.00 0.00 0.00 1.82
166 167 8.607459 CGTCCGAAACTCTATTCTAAGTAGTAA 58.393 37.037 0.00 0.00 0.00 2.24
199 200 6.659745 GTTCAAACCATAAAACCTAACCCT 57.340 37.500 0.00 0.00 0.00 4.34
200 201 7.764141 GTTCAAACCATAAAACCTAACCCTA 57.236 36.000 0.00 0.00 0.00 3.53
201 202 8.180706 GTTCAAACCATAAAACCTAACCCTAA 57.819 34.615 0.00 0.00 0.00 2.69
202 203 8.640651 GTTCAAACCATAAAACCTAACCCTAAA 58.359 33.333 0.00 0.00 0.00 1.85
203 204 8.180706 TCAAACCATAAAACCTAACCCTAAAC 57.819 34.615 0.00 0.00 0.00 2.01
204 205 8.005976 TCAAACCATAAAACCTAACCCTAAACT 58.994 33.333 0.00 0.00 0.00 2.66
205 206 8.644216 CAAACCATAAAACCTAACCCTAAACTT 58.356 33.333 0.00 0.00 0.00 2.66
206 207 7.770366 ACCATAAAACCTAACCCTAAACTTG 57.230 36.000 0.00 0.00 0.00 3.16
207 208 6.722590 ACCATAAAACCTAACCCTAAACTTGG 59.277 38.462 0.00 0.00 0.00 3.61
208 209 6.949463 CCATAAAACCTAACCCTAAACTTGGA 59.051 38.462 0.00 0.00 0.00 3.53
209 210 7.452189 CCATAAAACCTAACCCTAAACTTGGAA 59.548 37.037 0.00 0.00 0.00 3.53
210 211 8.862085 CATAAAACCTAACCCTAAACTTGGAAA 58.138 33.333 0.00 0.00 0.00 3.13
211 212 7.924358 AAAACCTAACCCTAAACTTGGAAAT 57.076 32.000 0.00 0.00 0.00 2.17
212 213 7.534723 AAACCTAACCCTAAACTTGGAAATC 57.465 36.000 0.00 0.00 0.00 2.17
213 214 6.464530 ACCTAACCCTAAACTTGGAAATCT 57.535 37.500 0.00 0.00 0.00 2.40
214 215 7.578458 ACCTAACCCTAAACTTGGAAATCTA 57.422 36.000 0.00 0.00 0.00 1.98
215 216 7.992295 ACCTAACCCTAAACTTGGAAATCTAA 58.008 34.615 0.00 0.00 0.00 2.10
216 217 8.450434 ACCTAACCCTAAACTTGGAAATCTAAA 58.550 33.333 0.00 0.00 0.00 1.85
217 218 8.737175 CCTAACCCTAAACTTGGAAATCTAAAC 58.263 37.037 0.00 0.00 0.00 2.01
218 219 7.534723 AACCCTAAACTTGGAAATCTAAACC 57.465 36.000 0.00 0.00 0.00 3.27
219 220 6.014647 ACCCTAAACTTGGAAATCTAAACCC 58.985 40.000 0.00 0.00 0.00 4.11
220 221 6.183361 ACCCTAAACTTGGAAATCTAAACCCT 60.183 38.462 0.00 0.00 0.00 4.34
221 222 7.018851 ACCCTAAACTTGGAAATCTAAACCCTA 59.981 37.037 0.00 0.00 0.00 3.53
222 223 7.556635 CCCTAAACTTGGAAATCTAAACCCTAG 59.443 40.741 0.00 0.00 0.00 3.02
223 224 6.835819 AAACTTGGAAATCTAAACCCTAGC 57.164 37.500 0.00 0.00 0.00 3.42
224 225 4.856509 ACTTGGAAATCTAAACCCTAGCC 58.143 43.478 0.00 0.00 0.00 3.93
225 226 3.945640 TGGAAATCTAAACCCTAGCCC 57.054 47.619 0.00 0.00 0.00 5.19
226 227 2.512476 TGGAAATCTAAACCCTAGCCCC 59.488 50.000 0.00 0.00 0.00 5.80
227 228 2.512476 GGAAATCTAAACCCTAGCCCCA 59.488 50.000 0.00 0.00 0.00 4.96
228 229 3.435169 GGAAATCTAAACCCTAGCCCCAG 60.435 52.174 0.00 0.00 0.00 4.45
229 230 2.889522 ATCTAAACCCTAGCCCCAGA 57.110 50.000 0.00 0.00 0.00 3.86
230 231 1.875488 TCTAAACCCTAGCCCCAGAC 58.125 55.000 0.00 0.00 0.00 3.51
231 232 0.837940 CTAAACCCTAGCCCCAGACC 59.162 60.000 0.00 0.00 0.00 3.85
232 233 0.622446 TAAACCCTAGCCCCAGACCC 60.622 60.000 0.00 0.00 0.00 4.46
233 234 2.432567 AAACCCTAGCCCCAGACCCT 62.433 60.000 0.00 0.00 0.00 4.34
234 235 1.533808 AACCCTAGCCCCAGACCCTA 61.534 60.000 0.00 0.00 0.00 3.53
235 236 1.316969 CCCTAGCCCCAGACCCTAA 59.683 63.158 0.00 0.00 0.00 2.69
236 237 0.327191 CCCTAGCCCCAGACCCTAAA 60.327 60.000 0.00 0.00 0.00 1.85
237 238 1.591768 CCTAGCCCCAGACCCTAAAA 58.408 55.000 0.00 0.00 0.00 1.52
238 239 2.136026 CCTAGCCCCAGACCCTAAAAT 58.864 52.381 0.00 0.00 0.00 1.82
239 240 2.158608 CCTAGCCCCAGACCCTAAAATG 60.159 54.545 0.00 0.00 0.00 2.32
240 241 1.382914 AGCCCCAGACCCTAAAATGT 58.617 50.000 0.00 0.00 0.00 2.71
241 242 1.285078 AGCCCCAGACCCTAAAATGTC 59.715 52.381 0.00 0.00 0.00 3.06
242 243 1.285078 GCCCCAGACCCTAAAATGTCT 59.715 52.381 0.00 0.00 42.41 3.41
243 244 2.508300 GCCCCAGACCCTAAAATGTCTA 59.492 50.000 0.00 0.00 39.76 2.59
244 245 3.053917 GCCCCAGACCCTAAAATGTCTAA 60.054 47.826 0.00 0.00 39.76 2.10
245 246 4.569015 GCCCCAGACCCTAAAATGTCTAAA 60.569 45.833 0.00 0.00 39.76 1.85
246 247 5.576128 CCCCAGACCCTAAAATGTCTAAAA 58.424 41.667 0.00 0.00 39.76 1.52
247 248 5.417894 CCCCAGACCCTAAAATGTCTAAAAC 59.582 44.000 0.00 0.00 39.76 2.43
248 249 5.123344 CCCAGACCCTAAAATGTCTAAAACG 59.877 44.000 0.00 0.00 39.76 3.60
249 250 5.704053 CCAGACCCTAAAATGTCTAAAACGT 59.296 40.000 0.00 0.00 39.76 3.99
250 251 6.128363 CCAGACCCTAAAATGTCTAAAACGTC 60.128 42.308 0.00 0.00 39.76 4.34
251 252 5.936372 AGACCCTAAAATGTCTAAAACGTCC 59.064 40.000 0.00 0.00 39.96 4.79
252 253 5.623169 ACCCTAAAATGTCTAAAACGTCCA 58.377 37.500 0.00 0.00 0.00 4.02
253 254 6.063404 ACCCTAAAATGTCTAAAACGTCCAA 58.937 36.000 0.00 0.00 0.00 3.53
254 255 6.546772 ACCCTAAAATGTCTAAAACGTCCAAA 59.453 34.615 0.00 0.00 0.00 3.28
255 256 7.068470 ACCCTAAAATGTCTAAAACGTCCAAAA 59.932 33.333 0.00 0.00 0.00 2.44
256 257 7.921745 CCCTAAAATGTCTAAAACGTCCAAAAA 59.078 33.333 0.00 0.00 0.00 1.94
257 258 8.748582 CCTAAAATGTCTAAAACGTCCAAAAAC 58.251 33.333 0.00 0.00 0.00 2.43
258 259 9.511144 CTAAAATGTCTAAAACGTCCAAAAACT 57.489 29.630 0.00 0.00 0.00 2.66
259 260 7.980742 AAATGTCTAAAACGTCCAAAAACTC 57.019 32.000 0.00 0.00 0.00 3.01
260 261 6.937436 ATGTCTAAAACGTCCAAAAACTCT 57.063 33.333 0.00 0.00 0.00 3.24
261 262 8.441312 AATGTCTAAAACGTCCAAAAACTCTA 57.559 30.769 0.00 0.00 0.00 2.43
262 263 8.617290 ATGTCTAAAACGTCCAAAAACTCTAT 57.383 30.769 0.00 0.00 0.00 1.98
324 1294 2.921612 ACCCTAAACCCGGGACTTAAAT 59.078 45.455 32.02 4.33 44.90 1.40
325 1295 3.334581 ACCCTAAACCCGGGACTTAAATT 59.665 43.478 32.02 5.82 44.90 1.82
340 1310 8.265165 GGACTTAAATTGTCCGAAACTCTATT 57.735 34.615 0.00 0.00 43.55 1.73
353 1323 9.415544 TCCGAAACTCTATTCTAAACAGTAAAC 57.584 33.333 0.00 0.00 0.00 2.01
390 2516 8.644216 CAAACCATAAAACCTAACCCTAAACTT 58.356 33.333 0.00 0.00 0.00 2.66
391 2517 7.770366 ACCATAAAACCTAACCCTAAACTTG 57.230 36.000 0.00 0.00 0.00 3.16
409 2535 4.856509 ACTTGGAAATCTAAACCCTAGCC 58.143 43.478 0.00 0.00 0.00 3.93
414 2540 5.104235 TGGAAATCTAAACCCTAGCCCTAAC 60.104 44.000 0.00 0.00 0.00 2.34
416 2542 2.767972 TCTAAACCCTAGCCCTAACCC 58.232 52.381 0.00 0.00 0.00 4.11
418 2544 0.922738 AAACCCTAGCCCTAACCCCC 60.923 60.000 0.00 0.00 0.00 5.40
422 2548 1.231963 CCTAGCCCTAACCCCCAAAT 58.768 55.000 0.00 0.00 0.00 2.32
423 2549 1.133482 CCTAGCCCTAACCCCCAAATG 60.133 57.143 0.00 0.00 0.00 2.32
436 2574 2.288763 CCCCAAATGGTCCAAAAACTCG 60.289 50.000 0.00 0.00 0.00 4.18
492 2630 7.623268 AATTGTCGAAGCAATAAACTTGTTC 57.377 32.000 2.05 0.00 38.03 3.18
493 2631 5.743026 TGTCGAAGCAATAAACTTGTTCA 57.257 34.783 0.00 0.00 0.00 3.18
495 2633 6.556212 TGTCGAAGCAATAAACTTGTTCAAA 58.444 32.000 0.00 0.00 0.00 2.69
496 2634 7.030165 TGTCGAAGCAATAAACTTGTTCAAAA 58.970 30.769 0.00 0.00 0.00 2.44
498 2636 7.998212 GTCGAAGCAATAAACTTGTTCAAAATG 59.002 33.333 0.00 0.00 0.00 2.32
499 2637 6.787043 CGAAGCAATAAACTTGTTCAAAATGC 59.213 34.615 0.00 0.00 0.00 3.56
500 2638 6.544038 AGCAATAAACTTGTTCAAAATGCC 57.456 33.333 0.00 0.00 0.00 4.40
501 2639 5.177327 AGCAATAAACTTGTTCAAAATGCCG 59.823 36.000 0.00 0.00 0.00 5.69
502 2640 5.373262 CAATAAACTTGTTCAAAATGCCGC 58.627 37.500 0.00 0.00 0.00 6.53
503 2641 1.864565 AACTTGTTCAAAATGCCGCC 58.135 45.000 0.00 0.00 0.00 6.13
504 2642 0.749649 ACTTGTTCAAAATGCCGCCA 59.250 45.000 0.00 0.00 0.00 5.69
506 2644 0.599728 TTGTTCAAAATGCCGCCAGC 60.600 50.000 0.00 0.00 44.14 4.85
507 2645 1.737735 GTTCAAAATGCCGCCAGCC 60.738 57.895 0.00 0.00 42.71 4.85
508 2646 3.279974 TTCAAAATGCCGCCAGCCG 62.280 57.895 0.00 0.00 42.71 5.52
509 2647 4.054825 CAAAATGCCGCCAGCCGT 62.055 61.111 0.00 0.00 42.71 5.68
513 2651 3.910914 AATGCCGCCAGCCGTAACA 62.911 57.895 0.00 0.00 42.71 2.41
521 2659 3.315949 AGCCGTAACAGCCGGGAA 61.316 61.111 2.18 0.00 45.57 3.97
522 2660 3.122971 GCCGTAACAGCCGGGAAC 61.123 66.667 2.18 0.00 45.57 3.62
535 2673 3.948719 GGAACCGGTGGCTGTGGA 61.949 66.667 8.52 0.00 0.00 4.02
536 2674 2.668550 GAACCGGTGGCTGTGGAC 60.669 66.667 8.52 0.00 0.00 4.02
537 2675 4.619227 AACCGGTGGCTGTGGACG 62.619 66.667 8.52 0.00 0.00 4.79
539 2677 4.082523 CCGGTGGCTGTGGACGAT 62.083 66.667 0.00 0.00 0.00 3.73
540 2678 2.509336 CGGTGGCTGTGGACGATC 60.509 66.667 0.00 0.00 0.00 3.69
594 2964 6.150474 TGTCACTAGGCACTAAATTAAAAGGC 59.850 38.462 0.00 0.00 42.17 4.35
606 2978 8.141909 ACTAAATTAAAAGGCAGTCCAGAAAAC 58.858 33.333 0.00 0.00 33.74 2.43
613 2985 7.396540 AAAGGCAGTCCAGAAAACTAATATG 57.603 36.000 0.00 0.00 33.74 1.78
715 3090 6.230472 TCAAGCATCTATGTTTGTACTGTGT 58.770 36.000 16.06 0.00 45.46 3.72
721 3096 9.840427 GCATCTATGTTTGTACTGTGTTTTAAT 57.160 29.630 0.00 0.00 0.00 1.40
842 3221 4.903010 AACGGCCGCAACGTGTCT 62.903 61.111 28.58 0.00 44.83 3.41
1211 3606 1.291877 CTCTTCGCCAAGGTCCGTTG 61.292 60.000 0.00 0.00 0.00 4.10
1231 3626 0.983905 GGTTTCCCCTCTCTCCCTCC 60.984 65.000 0.00 0.00 0.00 4.30
1323 3819 2.552585 TTCTCCCGTTCGTCGATGCC 62.553 60.000 0.00 0.00 42.86 4.40
1357 3858 3.118261 GGTCTCCTGCATTGAGGTATTGA 60.118 47.826 12.08 0.00 34.36 2.57
1464 3965 6.350194 GGAATACTCCTTTGTGTTTGATTCCC 60.350 42.308 0.00 0.00 38.88 3.97
1490 3991 1.118838 TTTTTGGCTCACTGGTTGGG 58.881 50.000 0.00 0.00 0.00 4.12
1683 4184 2.620585 GGTGAAGGCCAGAAATGCTATC 59.379 50.000 5.01 0.00 0.00 2.08
1722 4223 2.772191 TGTGTGGTCAGTGCCCCT 60.772 61.111 0.00 0.00 0.00 4.79
1723 4224 2.343475 CTGTGTGGTCAGTGCCCCTT 62.343 60.000 0.00 0.00 0.00 3.95
1782 4286 8.744652 TCACAATTTAGTTTTGGTTCAGAAAGA 58.255 29.630 0.00 0.00 0.00 2.52
1801 4305 4.546829 AGATTGGCTGAAATGCAATGTT 57.453 36.364 0.00 0.00 34.04 2.71
1811 4315 7.359181 GGCTGAAATGCAATGTTTTAACACTAC 60.359 37.037 0.00 0.00 36.83 2.73
1836 4340 6.638096 TGATCATCATTTTTGTGTGTGAGT 57.362 33.333 0.00 0.00 0.00 3.41
1845 4349 3.550950 TTGTGTGTGAGTGTGTGTTTG 57.449 42.857 0.00 0.00 0.00 2.93
1872 4376 7.856145 AGCCTTTGAGACATTTCATTAGTAG 57.144 36.000 0.00 0.00 0.00 2.57
1874 4378 7.885399 AGCCTTTGAGACATTTCATTAGTAGTT 59.115 33.333 0.00 0.00 0.00 2.24
1916 4525 3.556817 TGCTGATGCATTTCGGACT 57.443 47.368 0.00 0.00 45.31 3.85
1918 4527 1.469703 TGCTGATGCATTTCGGACTTG 59.530 47.619 0.00 0.00 45.31 3.16
1921 4530 3.126858 GCTGATGCATTTCGGACTTGTTA 59.873 43.478 0.00 0.00 39.41 2.41
1936 4545 7.781693 TCGGACTTGTTATCTAGGGTTACTATT 59.218 37.037 0.00 0.00 0.00 1.73
1937 4546 7.866393 CGGACTTGTTATCTAGGGTTACTATTG 59.134 40.741 0.00 0.00 0.00 1.90
1938 4547 8.148999 GGACTTGTTATCTAGGGTTACTATTGG 58.851 40.741 0.00 0.00 0.00 3.16
1943 4552 8.488668 TGTTATCTAGGGTTACTATTGGAAACC 58.511 37.037 0.00 0.00 41.62 3.27
1944 4553 5.603170 TCTAGGGTTACTATTGGAAACCG 57.397 43.478 0.09 0.00 42.98 4.44
1947 4556 2.239402 GGGTTACTATTGGAAACCGGGA 59.761 50.000 6.32 0.00 42.98 5.14
1985 4594 7.800155 TTGACAGTATTCATTTTCTGTGACA 57.200 32.000 1.41 0.00 40.53 3.58
2041 4650 1.531602 GTGGGCAAAGGGTGAAGCT 60.532 57.895 0.00 0.00 0.00 3.74
2185 4797 8.406730 AGGTAGGCACTCTGTTATACTTATAC 57.593 38.462 0.00 0.00 41.75 1.47
2228 4841 2.062636 ACTTTCCCTGTACCATGGTGT 58.937 47.619 28.17 10.26 0.00 4.16
2231 4844 0.981183 TCCCTGTACCATGGTGTGAC 59.019 55.000 28.17 17.94 0.00 3.67
2476 5091 7.963981 TGAGAGATTCTTGTAATTTTGTAGCG 58.036 34.615 0.00 0.00 0.00 4.26
2510 5125 4.220382 CCCAACATTGCATTTCTGAACCTA 59.780 41.667 0.00 0.00 0.00 3.08
2730 5347 4.943705 TGCTTGGTGGATTCATTAGAGTTC 59.056 41.667 0.00 0.00 0.00 3.01
2811 5448 7.038048 TCTCACTTGATCTACTGTAAAGCATG 58.962 38.462 0.00 0.00 0.00 4.06
2928 5591 3.596214 AGGTTGTTTGATAGCACTACCG 58.404 45.455 0.00 0.00 41.89 4.02
2962 5635 3.605634 TGCTAATTTGTGTCCGCATACT 58.394 40.909 0.00 0.00 0.00 2.12
2980 5653 8.656849 CCGCATACTTGTATCCATTATCTTTAC 58.343 37.037 0.00 0.00 0.00 2.01
3097 6107 7.346751 TGCCTTTAAATGGTTTATGGATCTC 57.653 36.000 0.00 0.00 0.00 2.75
3143 6155 5.461032 TTGTTGGAATGAATTTTAGGCGT 57.539 34.783 0.00 0.00 0.00 5.68
3491 6704 2.300152 TCGAAAGCTTGAGTGGACTGAT 59.700 45.455 0.00 0.00 0.00 2.90
3614 6827 1.532505 CGCAAAATGGCTTCATCTCCG 60.533 52.381 0.00 0.00 0.00 4.63
3656 6869 5.814481 TGTGACCAATATGAGTTCCATTCA 58.186 37.500 0.00 0.00 36.71 2.57
3692 6905 4.278310 AGATAAAACATGGCCACCCTTAC 58.722 43.478 8.16 0.00 0.00 2.34
3714 6927 2.348472 ACCTGGTCAAATGGAAGAGGA 58.652 47.619 0.00 0.00 32.66 3.71
3779 6992 4.202305 CCAGAATTAGATGGGGAGAGTCAC 60.202 50.000 0.00 0.00 32.63 3.67
3800 7013 1.318576 CTGAGGTGGTGGTTTTGGAC 58.681 55.000 0.00 0.00 0.00 4.02
3824 7037 0.257616 ACGAGGAGGAGGAAGAGGAG 59.742 60.000 0.00 0.00 0.00 3.69
3962 7175 5.653507 GTGAATGCTGCATTTCCTAATGAA 58.346 37.500 26.87 4.47 43.12 2.57
3970 7183 2.192664 TTTCCTAATGAAGCACGGCA 57.807 45.000 0.00 0.00 33.63 5.69
3983 7196 1.148273 ACGGCAGTTTCAGGAAGCA 59.852 52.632 0.00 0.00 0.00 3.91
3990 7203 3.679389 CAGTTTCAGGAAGCACAGGTAT 58.321 45.455 0.00 0.00 0.00 2.73
4034 7248 4.572389 CCCTGTGGATGAGAAGTAAAATCG 59.428 45.833 0.00 0.00 0.00 3.34
4060 7276 4.631131 TGATGCTTCCTGGACATTATACG 58.369 43.478 0.00 0.00 0.00 3.06
4061 7277 4.343814 TGATGCTTCCTGGACATTATACGA 59.656 41.667 0.00 0.00 0.00 3.43
4078 7294 9.318041 CATTATACGAAGCTACATTTGCATTAC 57.682 33.333 0.00 0.00 0.00 1.89
4093 7309 5.739752 TGCATTACATCTGCACTTACATC 57.260 39.130 0.00 0.00 44.30 3.06
4105 7321 8.016301 TCTGCACTTACATCTATCTCTTGAAT 57.984 34.615 0.00 0.00 0.00 2.57
4108 7324 8.144478 TGCACTTACATCTATCTCTTGAATACC 58.856 37.037 0.00 0.00 0.00 2.73
4109 7325 7.327275 GCACTTACATCTATCTCTTGAATACCG 59.673 40.741 0.00 0.00 0.00 4.02
4132 7348 7.177744 ACCGTGGTTAAAATATCCACTGAATTT 59.822 33.333 12.89 0.00 46.36 1.82
4145 7361 2.555757 ACTGAATTTGTTGCAGAGGCTC 59.444 45.455 6.34 6.34 41.91 4.70
4151 7367 2.346766 TGTTGCAGAGGCTCAAAGAA 57.653 45.000 18.26 0.71 41.91 2.52
4186 7402 0.677731 CGGAAATCCAAGCTGAGCCA 60.678 55.000 0.00 0.00 35.14 4.75
4305 7521 3.702048 CCGGGAAGAAGCCGGTCA 61.702 66.667 1.90 0.00 41.54 4.02
4323 7539 2.580815 TCGAGGGCGAGACGTCTA 59.419 61.111 20.09 0.00 42.51 2.59
4352 7568 1.945819 GCTGGCTCGAGAAAATCACCA 60.946 52.381 18.75 11.00 0.00 4.17
4593 7809 5.852282 AAGAGAGCAGGCTTTTGTTTTAA 57.148 34.783 0.00 0.00 0.00 1.52
4594 7810 5.444663 AGAGAGCAGGCTTTTGTTTTAAG 57.555 39.130 0.00 0.00 0.00 1.85
4595 7811 4.279420 AGAGAGCAGGCTTTTGTTTTAAGG 59.721 41.667 0.00 0.00 0.00 2.69
4596 7812 4.215109 AGAGCAGGCTTTTGTTTTAAGGA 58.785 39.130 0.00 0.00 0.00 3.36
4597 7813 4.038042 AGAGCAGGCTTTTGTTTTAAGGAC 59.962 41.667 0.00 0.00 0.00 3.85
4599 7815 4.161377 AGCAGGCTTTTGTTTTAAGGACAA 59.839 37.500 3.24 3.24 35.36 3.18
4601 7817 5.527214 GCAGGCTTTTGTTTTAAGGACAATT 59.473 36.000 7.15 0.00 36.92 2.32
4602 7818 6.038161 GCAGGCTTTTGTTTTAAGGACAATTT 59.962 34.615 7.15 0.00 36.92 1.82
4603 7819 7.225734 GCAGGCTTTTGTTTTAAGGACAATTTA 59.774 33.333 7.15 0.00 36.92 1.40
4604 7820 9.103861 CAGGCTTTTGTTTTAAGGACAATTTAA 57.896 29.630 7.15 0.72 36.92 1.52
4605 7821 9.104965 AGGCTTTTGTTTTAAGGACAATTTAAC 57.895 29.630 7.15 0.00 36.92 2.01
4606 7822 9.104965 GGCTTTTGTTTTAAGGACAATTTAACT 57.895 29.630 7.15 0.00 36.92 2.24
4641 7858 1.265095 CTTGTGGTGTGTGCTGTGATC 59.735 52.381 0.00 0.00 0.00 2.92
4647 7864 0.758123 TGTGTGCTGTGATCACCAGA 59.242 50.000 22.85 10.31 33.71 3.86
4656 7873 3.440127 TGTGATCACCAGACCAGATACA 58.560 45.455 22.85 0.00 0.00 2.29
4657 7874 3.837731 TGTGATCACCAGACCAGATACAA 59.162 43.478 22.85 0.00 0.00 2.41
4659 7876 3.452264 TGATCACCAGACCAGATACAAGG 59.548 47.826 0.00 0.00 0.00 3.61
4668 7885 2.308570 ACCAGATACAAGGGTTGATGCA 59.691 45.455 0.00 0.00 0.00 3.96
4671 7888 5.132502 CCAGATACAAGGGTTGATGCAATA 58.867 41.667 0.00 0.00 0.00 1.90
4681 7898 7.338800 AGGGTTGATGCAATATTTTGTAGAG 57.661 36.000 0.00 0.00 35.17 2.43
4684 7901 8.034804 GGGTTGATGCAATATTTTGTAGAGTTT 58.965 33.333 0.00 0.00 35.17 2.66
4696 7913 8.621532 ATTTTGTAGAGTTTCAGCATGTAGAA 57.378 30.769 0.00 0.00 37.40 2.10
4698 7915 6.096673 TGTAGAGTTTCAGCATGTAGAACA 57.903 37.500 0.00 0.00 37.40 3.18
4699 7916 6.521162 TGTAGAGTTTCAGCATGTAGAACAA 58.479 36.000 0.00 0.00 37.40 2.83
4726 7944 1.098050 AGTGGATGCCGCTTGATTTC 58.902 50.000 0.00 0.00 42.24 2.17
4755 7973 7.900352 CGACTAGAAATCTTGTAAGTTTGCATC 59.100 37.037 0.00 0.00 32.36 3.91
4764 7982 5.342806 TGTAAGTTTGCATCGTCTCTTTG 57.657 39.130 0.00 0.00 0.00 2.77
4771 7989 4.668576 TGCATCGTCTCTTTGATGTTTC 57.331 40.909 4.37 0.00 43.06 2.78
4781 8044 8.335356 CGTCTCTTTGATGTTTCACTTAAGAAA 58.665 33.333 10.09 0.00 35.28 2.52
4833 8136 7.640597 AAGGGTAAAATTACATACTTCTGGC 57.359 36.000 5.74 0.00 35.37 4.85
4983 9380 4.649088 ATCCACTCGTCGAATGAATGTA 57.351 40.909 5.05 0.00 0.00 2.29
5003 9400 1.555075 AGAGAACGAAGCTGCCCATTA 59.445 47.619 0.00 0.00 0.00 1.90
5004 9401 1.666189 GAGAACGAAGCTGCCCATTAC 59.334 52.381 0.00 0.00 0.00 1.89
5170 10495 2.076863 GCACTCCACACAGTTATCCAC 58.923 52.381 0.00 0.00 0.00 4.02
5172 10497 2.038426 CACTCCACACAGTTATCCACCA 59.962 50.000 0.00 0.00 0.00 4.17
5182 10507 0.035820 TTATCCACCAACGGTCCAGC 60.036 55.000 0.00 0.00 31.02 4.85
5186 10511 1.024579 CCACCAACGGTCCAGCATAC 61.025 60.000 0.00 0.00 31.02 2.39
5188 10513 0.618458 ACCAACGGTCCAGCATACAT 59.382 50.000 0.00 0.00 0.00 2.29
5191 10516 2.419436 CCAACGGTCCAGCATACATACA 60.419 50.000 0.00 0.00 0.00 2.29
5192 10517 3.466836 CAACGGTCCAGCATACATACAT 58.533 45.455 0.00 0.00 0.00 2.29
5193 10518 4.502431 CCAACGGTCCAGCATACATACATA 60.502 45.833 0.00 0.00 0.00 2.29
5194 10519 4.252971 ACGGTCCAGCATACATACATAC 57.747 45.455 0.00 0.00 0.00 2.39
5196 10521 3.987868 CGGTCCAGCATACATACATACAC 59.012 47.826 0.00 0.00 0.00 2.90
5197 10522 4.500716 CGGTCCAGCATACATACATACACA 60.501 45.833 0.00 0.00 0.00 3.72
5199 10524 5.356426 GTCCAGCATACATACATACACACA 58.644 41.667 0.00 0.00 0.00 3.72
5200 10525 5.234329 GTCCAGCATACATACATACACACAC 59.766 44.000 0.00 0.00 0.00 3.82
5201 10526 5.105146 TCCAGCATACATACATACACACACA 60.105 40.000 0.00 0.00 0.00 3.72
5202 10527 5.006649 CCAGCATACATACATACACACACAC 59.993 44.000 0.00 0.00 0.00 3.82
5205 10530 5.350091 GCATACATACATACACACACACACA 59.650 40.000 0.00 0.00 0.00 3.72
5206 10531 6.672118 GCATACATACATACACACACACACAC 60.672 42.308 0.00 0.00 0.00 3.82
5208 10533 4.509970 ACATACATACACACACACACACAC 59.490 41.667 0.00 0.00 0.00 3.82
5210 10535 2.675844 ACATACACACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
5211 10536 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
5216 10541 2.016318 CACACACACACACACAATCCT 58.984 47.619 0.00 0.00 0.00 3.24
5232 10558 0.837272 TCCTAAGCTAAAGCCGGCAT 59.163 50.000 31.54 15.82 43.38 4.40
5392 10725 1.291877 CCAAGTTCAAGGAGACGCGG 61.292 60.000 12.47 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 7.499200 AGGGTTTAGGGTTTTTAGTGTTTTT 57.501 32.000 0.00 0.00 0.00 1.94
99 100 8.606754 TTAGGGTTTAGGGTTTTTAGTGTTTT 57.393 30.769 0.00 0.00 0.00 2.43
100 101 8.477256 GTTTAGGGTTTAGGGTTTTTAGTGTTT 58.523 33.333 0.00 0.00 0.00 2.83
101 102 7.069826 GGTTTAGGGTTTAGGGTTTTTAGTGTT 59.930 37.037 0.00 0.00 0.00 3.32
102 103 6.550854 GGTTTAGGGTTTAGGGTTTTTAGTGT 59.449 38.462 0.00 0.00 0.00 3.55
103 104 6.015180 GGGTTTAGGGTTTAGGGTTTTTAGTG 60.015 42.308 0.00 0.00 0.00 2.74
105 106 5.183713 CGGGTTTAGGGTTTAGGGTTTTTAG 59.816 44.000 0.00 0.00 0.00 1.85
106 107 5.076182 CGGGTTTAGGGTTTAGGGTTTTTA 58.924 41.667 0.00 0.00 0.00 1.52
107 108 3.896888 CGGGTTTAGGGTTTAGGGTTTTT 59.103 43.478 0.00 0.00 0.00 1.94
109 110 2.225091 CCGGGTTTAGGGTTTAGGGTTT 60.225 50.000 0.00 0.00 0.00 3.27
112 113 0.256752 CCCGGGTTTAGGGTTTAGGG 59.743 60.000 14.18 0.00 43.89 3.53
113 114 3.888424 CCCGGGTTTAGGGTTTAGG 57.112 57.895 14.18 0.00 43.89 2.69
131 132 6.941218 ATAGAGTTTCGGACGTTTTAAGTC 57.059 37.500 0.00 0.00 37.86 3.01
133 134 7.578169 AGAATAGAGTTTCGGACGTTTTAAG 57.422 36.000 0.00 0.00 0.00 1.85
135 136 8.299570 ACTTAGAATAGAGTTTCGGACGTTTTA 58.700 33.333 0.00 0.00 0.00 1.52
136 137 7.150640 ACTTAGAATAGAGTTTCGGACGTTTT 58.849 34.615 0.00 0.00 0.00 2.43
176 177 6.659745 AGGGTTAGGTTTTATGGTTTGAAC 57.340 37.500 0.00 0.00 0.00 3.18
177 178 8.640651 GTTTAGGGTTAGGTTTTATGGTTTGAA 58.359 33.333 0.00 0.00 0.00 2.69
178 179 8.005976 AGTTTAGGGTTAGGTTTTATGGTTTGA 58.994 33.333 0.00 0.00 0.00 2.69
179 180 8.185506 AGTTTAGGGTTAGGTTTTATGGTTTG 57.814 34.615 0.00 0.00 0.00 2.93
184 185 8.411991 TTCCAAGTTTAGGGTTAGGTTTTATG 57.588 34.615 0.00 0.00 0.00 1.90
185 186 9.610104 ATTTCCAAGTTTAGGGTTAGGTTTTAT 57.390 29.630 0.00 0.00 0.00 1.40
188 189 7.302948 AGATTTCCAAGTTTAGGGTTAGGTTT 58.697 34.615 0.00 0.00 0.00 3.27
189 190 6.860034 AGATTTCCAAGTTTAGGGTTAGGTT 58.140 36.000 0.00 0.00 0.00 3.50
190 191 6.464530 AGATTTCCAAGTTTAGGGTTAGGT 57.535 37.500 0.00 0.00 0.00 3.08
191 192 8.737175 GTTTAGATTTCCAAGTTTAGGGTTAGG 58.263 37.037 0.00 0.00 0.00 2.69
192 193 8.737175 GGTTTAGATTTCCAAGTTTAGGGTTAG 58.263 37.037 0.00 0.00 0.00 2.34
193 194 7.670979 GGGTTTAGATTTCCAAGTTTAGGGTTA 59.329 37.037 0.00 0.00 0.00 2.85
194 195 6.495872 GGGTTTAGATTTCCAAGTTTAGGGTT 59.504 38.462 0.00 0.00 0.00 4.11
195 196 6.014647 GGGTTTAGATTTCCAAGTTTAGGGT 58.985 40.000 0.00 0.00 0.00 4.34
196 197 6.253758 AGGGTTTAGATTTCCAAGTTTAGGG 58.746 40.000 0.00 0.00 0.00 3.53
197 198 7.067129 GCTAGGGTTTAGATTTCCAAGTTTAGG 59.933 40.741 0.00 0.00 0.00 2.69
198 199 7.067129 GGCTAGGGTTTAGATTTCCAAGTTTAG 59.933 40.741 0.00 0.00 0.00 1.85
199 200 6.888088 GGCTAGGGTTTAGATTTCCAAGTTTA 59.112 38.462 0.00 0.00 0.00 2.01
200 201 5.715279 GGCTAGGGTTTAGATTTCCAAGTTT 59.285 40.000 0.00 0.00 0.00 2.66
201 202 5.262009 GGCTAGGGTTTAGATTTCCAAGTT 58.738 41.667 0.00 0.00 0.00 2.66
202 203 4.325109 GGGCTAGGGTTTAGATTTCCAAGT 60.325 45.833 0.00 0.00 0.00 3.16
203 204 4.207955 GGGCTAGGGTTTAGATTTCCAAG 58.792 47.826 0.00 0.00 0.00 3.61
204 205 3.053170 GGGGCTAGGGTTTAGATTTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
205 206 2.512476 GGGGCTAGGGTTTAGATTTCCA 59.488 50.000 0.00 0.00 0.00 3.53
206 207 2.512476 TGGGGCTAGGGTTTAGATTTCC 59.488 50.000 0.00 0.00 0.00 3.13
207 208 3.458487 TCTGGGGCTAGGGTTTAGATTTC 59.542 47.826 0.00 0.00 0.00 2.17
208 209 3.202373 GTCTGGGGCTAGGGTTTAGATTT 59.798 47.826 0.00 0.00 0.00 2.17
209 210 2.778270 GTCTGGGGCTAGGGTTTAGATT 59.222 50.000 0.00 0.00 0.00 2.40
210 211 2.409570 GTCTGGGGCTAGGGTTTAGAT 58.590 52.381 0.00 0.00 0.00 1.98
211 212 1.624391 GGTCTGGGGCTAGGGTTTAGA 60.624 57.143 0.00 0.00 0.00 2.10
212 213 0.837940 GGTCTGGGGCTAGGGTTTAG 59.162 60.000 0.00 0.00 0.00 1.85
213 214 0.622446 GGGTCTGGGGCTAGGGTTTA 60.622 60.000 0.00 0.00 0.00 2.01
214 215 1.929088 GGGTCTGGGGCTAGGGTTT 60.929 63.158 0.00 0.00 0.00 3.27
215 216 1.533808 TAGGGTCTGGGGCTAGGGTT 61.534 60.000 0.00 0.00 0.00 4.11
216 217 1.533808 TTAGGGTCTGGGGCTAGGGT 61.534 60.000 0.00 0.00 0.00 4.34
217 218 0.327191 TTTAGGGTCTGGGGCTAGGG 60.327 60.000 0.00 0.00 0.00 3.53
218 219 1.591768 TTTTAGGGTCTGGGGCTAGG 58.408 55.000 0.00 0.00 0.00 3.02
219 220 2.509964 ACATTTTAGGGTCTGGGGCTAG 59.490 50.000 0.00 0.00 0.00 3.42
220 221 2.508300 GACATTTTAGGGTCTGGGGCTA 59.492 50.000 0.00 0.00 0.00 3.93
221 222 1.285078 GACATTTTAGGGTCTGGGGCT 59.715 52.381 0.00 0.00 0.00 5.19
222 223 1.285078 AGACATTTTAGGGTCTGGGGC 59.715 52.381 0.00 0.00 42.49 5.80
223 224 4.855298 TTAGACATTTTAGGGTCTGGGG 57.145 45.455 4.66 0.00 43.78 4.96
224 225 5.123344 CGTTTTAGACATTTTAGGGTCTGGG 59.877 44.000 4.66 0.00 43.78 4.45
225 226 5.704053 ACGTTTTAGACATTTTAGGGTCTGG 59.296 40.000 4.66 0.00 43.78 3.86
226 227 6.128363 GGACGTTTTAGACATTTTAGGGTCTG 60.128 42.308 4.66 0.00 43.78 3.51
227 228 5.936372 GGACGTTTTAGACATTTTAGGGTCT 59.064 40.000 0.00 0.00 45.72 3.85
228 229 5.702209 TGGACGTTTTAGACATTTTAGGGTC 59.298 40.000 0.00 0.00 0.00 4.46
229 230 5.623169 TGGACGTTTTAGACATTTTAGGGT 58.377 37.500 0.00 0.00 0.00 4.34
230 231 6.563222 TTGGACGTTTTAGACATTTTAGGG 57.437 37.500 0.00 0.00 0.00 3.53
231 232 8.748582 GTTTTTGGACGTTTTAGACATTTTAGG 58.251 33.333 0.00 0.00 0.00 2.69
232 233 9.511144 AGTTTTTGGACGTTTTAGACATTTTAG 57.489 29.630 0.00 0.00 0.00 1.85
233 234 9.505995 GAGTTTTTGGACGTTTTAGACATTTTA 57.494 29.630 0.00 0.00 0.00 1.52
234 235 8.248253 AGAGTTTTTGGACGTTTTAGACATTTT 58.752 29.630 0.00 0.00 0.00 1.82
235 236 7.768240 AGAGTTTTTGGACGTTTTAGACATTT 58.232 30.769 0.00 0.00 0.00 2.32
236 237 7.329588 AGAGTTTTTGGACGTTTTAGACATT 57.670 32.000 0.00 0.00 0.00 2.71
237 238 6.937436 AGAGTTTTTGGACGTTTTAGACAT 57.063 33.333 0.00 0.00 0.00 3.06
238 239 8.441312 AATAGAGTTTTTGGACGTTTTAGACA 57.559 30.769 0.00 0.00 0.00 3.41
239 240 9.726232 AAAATAGAGTTTTTGGACGTTTTAGAC 57.274 29.630 0.00 0.00 0.00 2.59
242 243 9.518906 GGAAAAATAGAGTTTTTGGACGTTTTA 57.481 29.630 3.50 0.00 32.37 1.52
243 244 8.255206 AGGAAAAATAGAGTTTTTGGACGTTTT 58.745 29.630 3.50 0.00 32.37 2.43
244 245 7.778083 AGGAAAAATAGAGTTTTTGGACGTTT 58.222 30.769 3.50 0.00 32.37 3.60
245 246 7.342769 AGGAAAAATAGAGTTTTTGGACGTT 57.657 32.000 3.50 0.00 32.37 3.99
246 247 6.954487 AGGAAAAATAGAGTTTTTGGACGT 57.046 33.333 3.50 0.00 32.37 4.34
247 248 7.169140 CCAAAGGAAAAATAGAGTTTTTGGACG 59.831 37.037 6.79 0.00 43.61 4.79
248 249 8.201464 TCCAAAGGAAAAATAGAGTTTTTGGAC 58.799 33.333 10.37 0.00 44.21 4.02
249 250 8.312669 TCCAAAGGAAAAATAGAGTTTTTGGA 57.687 30.769 10.37 10.37 45.83 3.53
250 251 8.956533 TTCCAAAGGAAAAATAGAGTTTTTGG 57.043 30.769 3.50 6.37 42.76 3.28
255 256 9.778741 GGAAAATTCCAAAGGAAAAATAGAGTT 57.221 29.630 7.32 0.00 45.41 3.01
280 281 9.961265 GGGTTTAGGATAATCTTTTAAAATCGG 57.039 33.333 0.09 0.00 0.00 4.18
292 293 5.311265 CCGGGTTTAGGGTTTAGGATAATC 58.689 45.833 0.00 0.00 0.00 1.75
296 297 1.848388 CCCGGGTTTAGGGTTTAGGAT 59.152 52.381 14.18 0.00 43.89 3.24
324 1294 7.439381 ACTGTTTAGAATAGAGTTTCGGACAA 58.561 34.615 0.00 0.00 0.00 3.18
325 1295 6.989659 ACTGTTTAGAATAGAGTTTCGGACA 58.010 36.000 0.00 0.00 0.00 4.02
340 1310 9.669887 TTGAACCTTTAGTGTTTACTGTTTAGA 57.330 29.630 0.00 0.00 37.78 2.10
362 1332 8.640651 GTTTAGGGTTAGGTTTTATGGTTTGAA 58.359 33.333 0.00 0.00 0.00 2.69
364 1334 8.185506 AGTTTAGGGTTAGGTTTTATGGTTTG 57.814 34.615 0.00 0.00 0.00 2.93
390 2516 3.470868 AGGGCTAGGGTTTAGATTTCCA 58.529 45.455 0.00 0.00 0.00 3.53
391 2517 5.374921 GTTAGGGCTAGGGTTTAGATTTCC 58.625 45.833 0.00 0.00 0.00 3.13
409 2535 0.707616 TGGACCATTTGGGGGTTAGG 59.292 55.000 0.96 0.00 42.91 2.69
414 2540 2.038426 GAGTTTTTGGACCATTTGGGGG 59.962 50.000 0.00 0.00 42.91 5.40
416 2542 2.625790 TCGAGTTTTTGGACCATTTGGG 59.374 45.455 0.00 0.00 44.81 4.12
418 2544 6.073819 GGAAAATCGAGTTTTTGGACCATTTG 60.074 38.462 12.62 0.00 40.04 2.32
422 2548 3.319689 GGGAAAATCGAGTTTTTGGACCA 59.680 43.478 12.62 0.00 40.04 4.02
423 2549 3.572682 AGGGAAAATCGAGTTTTTGGACC 59.427 43.478 12.62 8.24 40.04 4.46
478 2616 5.373262 CGGCATTTTGAACAAGTTTATTGC 58.627 37.500 0.00 0.00 0.00 3.56
480 2618 4.450757 GGCGGCATTTTGAACAAGTTTATT 59.549 37.500 3.07 0.00 0.00 1.40
481 2619 3.993736 GGCGGCATTTTGAACAAGTTTAT 59.006 39.130 3.07 0.00 0.00 1.40
482 2620 3.181475 TGGCGGCATTTTGAACAAGTTTA 60.181 39.130 7.97 0.00 0.00 2.01
492 2630 2.206515 TTACGGCTGGCGGCATTTTG 62.207 55.000 27.26 0.95 44.01 2.44
493 2631 1.974343 TTACGGCTGGCGGCATTTT 60.974 52.632 27.26 7.95 44.01 1.82
495 2633 3.131478 GTTACGGCTGGCGGCATT 61.131 61.111 27.26 8.44 44.01 3.56
496 2634 4.402528 TGTTACGGCTGGCGGCAT 62.403 61.111 27.26 10.17 44.01 4.40
507 2645 2.812178 CGGTTCCCGGCTGTTACG 60.812 66.667 0.00 0.00 44.15 3.18
519 2657 2.668550 GTCCACAGCCACCGGTTC 60.669 66.667 2.97 0.00 0.00 3.62
522 2660 4.082523 ATCGTCCACAGCCACCGG 62.083 66.667 0.00 0.00 0.00 5.28
523 2661 2.507110 AAGATCGTCCACAGCCACCG 62.507 60.000 0.00 0.00 0.00 4.94
524 2662 1.021390 CAAGATCGTCCACAGCCACC 61.021 60.000 0.00 0.00 0.00 4.61
525 2663 1.021390 CCAAGATCGTCCACAGCCAC 61.021 60.000 0.00 0.00 0.00 5.01
527 2665 0.741221 GTCCAAGATCGTCCACAGCC 60.741 60.000 0.00 0.00 0.00 4.85
529 2667 2.455674 TTGTCCAAGATCGTCCACAG 57.544 50.000 0.00 0.00 0.00 3.66
530 2668 2.549992 CCTTTGTCCAAGATCGTCCACA 60.550 50.000 0.00 0.00 33.80 4.17
531 2669 2.076863 CCTTTGTCCAAGATCGTCCAC 58.923 52.381 0.00 0.00 33.80 4.02
533 2671 1.278127 TCCCTTTGTCCAAGATCGTCC 59.722 52.381 0.00 0.00 33.80 4.79
534 2672 2.028020 ACTCCCTTTGTCCAAGATCGTC 60.028 50.000 0.00 0.00 33.80 4.20
535 2673 1.978580 ACTCCCTTTGTCCAAGATCGT 59.021 47.619 0.00 0.00 33.80 3.73
536 2674 2.770164 ACTCCCTTTGTCCAAGATCG 57.230 50.000 0.00 0.00 33.80 3.69
537 2675 5.422214 TTCTACTCCCTTTGTCCAAGATC 57.578 43.478 0.00 0.00 33.80 2.75
538 2676 5.843019 TTTCTACTCCCTTTGTCCAAGAT 57.157 39.130 0.00 0.00 33.80 2.40
539 2677 5.640158 TTTTCTACTCCCTTTGTCCAAGA 57.360 39.130 0.00 0.00 33.80 3.02
594 2964 8.680903 AGCATTTCATATTAGTTTTCTGGACTG 58.319 33.333 0.00 0.00 0.00 3.51
674 3049 7.877097 AGATGCTTGATATGTCTCAAAGGTATC 59.123 37.037 0.00 0.00 34.86 2.24
775 3154 1.536766 TGCGCCAGAAACTGAAATGAG 59.463 47.619 4.18 0.00 32.44 2.90
939 3318 4.893601 GGGTTCTAGGGCGCTCGC 62.894 72.222 6.54 5.60 41.06 5.03
981 3361 3.114647 CTCGCCTCCTCTTCGTCGG 62.115 68.421 0.00 0.00 0.00 4.79
1162 3557 0.673644 CGGAAGAAGGTGTTGCGGAT 60.674 55.000 0.00 0.00 35.35 4.18
1236 3631 3.115556 CGAAGGGAGAGGCGAGAG 58.884 66.667 0.00 0.00 0.00 3.20
1323 3819 4.547367 GAGACCAATCGCCGGGGG 62.547 72.222 19.63 4.42 0.00 5.40
1382 3883 4.090057 GCTTGAACAGCGCGGGAC 62.090 66.667 13.26 5.90 39.29 4.46
1392 3893 3.406682 CCAAGATTGGCGCTTGAAC 57.593 52.632 7.64 0.00 44.16 3.18
1473 3974 0.032615 AACCCAACCAGTGAGCCAAA 60.033 50.000 0.00 0.00 0.00 3.28
1474 3975 0.032615 AAACCCAACCAGTGAGCCAA 60.033 50.000 0.00 0.00 0.00 4.52
1477 3978 0.668535 GACAAACCCAACCAGTGAGC 59.331 55.000 0.00 0.00 0.00 4.26
1486 3987 2.167487 GCAGTTCCAAAGACAAACCCAA 59.833 45.455 0.00 0.00 0.00 4.12
1490 3991 2.159254 TGCAGCAGTTCCAAAGACAAAC 60.159 45.455 0.00 0.00 0.00 2.93
1766 4270 4.746611 CAGCCAATCTTTCTGAACCAAAAC 59.253 41.667 0.00 0.00 0.00 2.43
1782 4286 6.485984 TGTTAAAACATTGCATTTCAGCCAAT 59.514 30.769 0.00 0.00 33.17 3.16
1811 4315 7.114388 CACTCACACACAAAAATGATGATCAAG 59.886 37.037 0.00 0.00 0.00 3.02
1825 4329 2.881513 ACAAACACACACTCACACACAA 59.118 40.909 0.00 0.00 0.00 3.33
1836 4340 4.095782 GTCTCAAAGGCTTACAAACACACA 59.904 41.667 0.00 0.00 0.00 3.72
1845 4349 8.045176 ACTAATGAAATGTCTCAAAGGCTTAC 57.955 34.615 0.00 0.00 0.00 2.34
1874 4378 8.662141 GCAAACCTAGATTCGAAACTTACATAA 58.338 33.333 13.50 0.00 0.00 1.90
1914 4523 8.849543 TCCAATAGTAACCCTAGATAACAAGT 57.150 34.615 0.00 0.00 0.00 3.16
1916 4525 9.895138 GTTTCCAATAGTAACCCTAGATAACAA 57.105 33.333 0.00 0.00 0.00 2.83
1918 4527 7.654923 CGGTTTCCAATAGTAACCCTAGATAAC 59.345 40.741 0.00 0.00 38.44 1.89
1921 4530 5.071384 CCGGTTTCCAATAGTAACCCTAGAT 59.929 44.000 0.00 0.00 38.44 1.98
1938 4547 6.570672 AAGATAGAAACTTTTCCCGGTTTC 57.429 37.500 0.00 2.51 46.56 2.78
1941 4550 5.472478 GTCAAAGATAGAAACTTTTCCCGGT 59.528 40.000 0.00 0.00 37.92 5.28
1943 4552 6.204882 ACTGTCAAAGATAGAAACTTTTCCCG 59.795 38.462 0.00 0.00 37.92 5.14
1944 4553 7.511959 ACTGTCAAAGATAGAAACTTTTCCC 57.488 36.000 0.00 0.00 37.92 3.97
1985 4594 9.034800 TCCAAGATTTTTAAGCAATTCCTATGT 57.965 29.630 0.00 0.00 0.00 2.29
2185 4797 4.583073 TGGAGCAAATCATTCATCTCATGG 59.417 41.667 0.00 0.00 0.00 3.66
2228 4841 4.937620 CCTGAAAGAAATTCCTGATCGTCA 59.062 41.667 0.00 0.00 37.22 4.35
2231 4844 5.163713 GGTTCCTGAAAGAAATTCCTGATCG 60.164 44.000 0.00 0.00 37.22 3.69
2394 5007 5.457140 TCTTCATCAAATAACCGCACAAAC 58.543 37.500 0.00 0.00 0.00 2.93
2441 5054 9.829507 ATTACAAGAATCTCTCATCAAAGTAGG 57.170 33.333 0.00 0.00 0.00 3.18
2470 5085 1.276705 TGGGCAACTCATTACGCTACA 59.723 47.619 0.00 0.00 0.00 2.74
2476 5091 3.253230 GCAATGTTGGGCAACTCATTAC 58.747 45.455 0.00 0.00 41.67 1.89
2730 5347 1.337447 CCAGCTGGTTTTTCCATGCAG 60.337 52.381 25.53 0.00 46.12 4.41
2811 5448 2.541556 GAATACACTGCCGAGAAGGTC 58.458 52.381 0.00 0.00 43.70 3.85
2861 5524 6.855763 TTTTATCCAAATCAGGCATTGTCT 57.144 33.333 0.00 0.00 0.00 3.41
2928 5591 0.179936 ATTAGCAGCTGAGGCCTGAC 59.820 55.000 20.43 0.00 39.73 3.51
2980 5653 4.685924 ACCAGTTTTTGTGCAGAATTCAG 58.314 39.130 8.44 0.00 0.00 3.02
3074 6084 7.346751 TGAGATCCATAAACCATTTAAAGGC 57.653 36.000 0.00 0.00 0.00 4.35
3131 6143 5.545658 TTCAGATCACACGCCTAAAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3143 6155 4.039609 TCTTCTCTGTGCTTTCAGATCACA 59.960 41.667 0.00 0.00 42.47 3.58
3491 6704 7.004086 AGTCAACCAAATCATCAACTTTAGGA 58.996 34.615 0.00 0.00 0.00 2.94
3591 6804 1.479323 AGATGAAGCCATTTTGCGCAT 59.521 42.857 12.75 0.00 35.07 4.73
3614 6827 6.310197 GTCACAGAGAAGCAATGATTTACAC 58.690 40.000 0.00 0.00 0.00 2.90
3656 6869 7.436080 CCATGTTTTATCTTAATGCGCTGAATT 59.564 33.333 9.73 2.34 0.00 2.17
3692 6905 3.519510 TCCTCTTCCATTTGACCAGGTAG 59.480 47.826 0.00 0.00 0.00 3.18
3779 6992 1.654220 CAAAACCACCACCTCAGCG 59.346 57.895 0.00 0.00 0.00 5.18
3800 7013 0.665835 CTTCCTCCTCCTCGTCATCG 59.334 60.000 0.00 0.00 38.55 3.84
3824 7037 0.539986 TATTCACCGTTGCCTCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
3962 7175 0.886490 CTTCCTGAAACTGCCGTGCT 60.886 55.000 0.00 0.00 0.00 4.40
3970 7183 3.679389 CATACCTGTGCTTCCTGAAACT 58.321 45.455 0.00 0.00 0.00 2.66
3983 7196 3.451178 AGGAAGTAACGATGCATACCTGT 59.549 43.478 0.00 0.00 0.00 4.00
3990 7203 4.000988 GGAAGAAAGGAAGTAACGATGCA 58.999 43.478 0.00 0.00 0.00 3.96
4034 7248 2.408271 TGTCCAGGAAGCATCATCAC 57.592 50.000 0.00 0.00 0.00 3.06
4060 7276 5.684626 GCAGATGTAATGCAAATGTAGCTTC 59.315 40.000 0.00 0.00 43.31 3.86
4061 7277 5.585390 GCAGATGTAATGCAAATGTAGCTT 58.415 37.500 0.00 0.00 43.31 3.74
4078 7294 7.432059 TCAAGAGATAGATGTAAGTGCAGATG 58.568 38.462 0.00 0.00 0.00 2.90
4093 7309 8.712285 TTTTAACCACGGTATTCAAGAGATAG 57.288 34.615 0.00 0.00 0.00 2.08
4132 7348 2.224606 CTTCTTTGAGCCTCTGCAACA 58.775 47.619 0.00 0.00 41.13 3.33
4145 7361 5.344128 CCGTGATCTTGATTTTGCTTCTTTG 59.656 40.000 0.00 0.00 0.00 2.77
4151 7367 5.393461 GGATTTCCGTGATCTTGATTTTGCT 60.393 40.000 0.00 0.00 0.00 3.91
4305 7521 1.145598 TAGACGTCTCGCCCTCGAT 59.854 57.895 23.89 0.00 44.56 3.59
4322 7538 3.499050 GAGCCAGCTCTCGACGTA 58.501 61.111 12.42 0.00 39.80 3.57
4352 7568 0.256464 TTTTTGTCAGGTCCACCGGT 59.744 50.000 0.00 0.00 42.08 5.28
4398 7614 1.336332 GCTGTCTCAGTCGAAGAGCAA 60.336 52.381 10.46 2.21 36.95 3.91
4403 7619 1.153939 CGGGCTGTCTCAGTCGAAG 60.154 63.158 0.00 0.00 36.90 3.79
4432 7648 0.889306 AGCAAGAGTACCGTCAGGAC 59.111 55.000 0.00 0.00 41.02 3.85
4593 7809 4.887071 TGCAACACTCAGTTAAATTGTCCT 59.113 37.500 0.00 0.00 38.74 3.85
4594 7810 5.181690 TGCAACACTCAGTTAAATTGTCC 57.818 39.130 0.00 0.00 38.74 4.02
4595 7811 4.676924 GCTGCAACACTCAGTTAAATTGTC 59.323 41.667 0.00 0.00 38.74 3.18
4596 7812 4.499696 GGCTGCAACACTCAGTTAAATTGT 60.500 41.667 0.50 0.00 38.74 2.71
4597 7813 3.983344 GGCTGCAACACTCAGTTAAATTG 59.017 43.478 0.50 0.00 38.74 2.32
4599 7815 3.490348 AGGCTGCAACACTCAGTTAAAT 58.510 40.909 0.50 0.00 38.74 1.40
4601 7817 2.104792 AGAGGCTGCAACACTCAGTTAA 59.895 45.455 12.68 0.00 38.74 2.01
4602 7818 1.694150 AGAGGCTGCAACACTCAGTTA 59.306 47.619 12.68 0.00 38.74 2.24
4603 7819 0.471617 AGAGGCTGCAACACTCAGTT 59.528 50.000 12.68 0.00 42.42 3.16
4604 7820 0.471617 AAGAGGCTGCAACACTCAGT 59.528 50.000 12.68 0.45 34.21 3.41
4605 7821 0.873054 CAAGAGGCTGCAACACTCAG 59.127 55.000 12.68 3.52 33.76 3.35
4606 7822 0.181114 ACAAGAGGCTGCAACACTCA 59.819 50.000 12.68 0.00 33.76 3.41
4641 7858 1.909302 ACCCTTGTATCTGGTCTGGTG 59.091 52.381 0.00 0.00 0.00 4.17
4647 7864 2.308570 TGCATCAACCCTTGTATCTGGT 59.691 45.455 0.00 0.00 0.00 4.00
4656 7873 7.397192 ACTCTACAAAATATTGCATCAACCCTT 59.603 33.333 0.00 0.00 40.34 3.95
4657 7874 6.891908 ACTCTACAAAATATTGCATCAACCCT 59.108 34.615 0.00 0.00 40.34 4.34
4659 7876 8.986477 AAACTCTACAAAATATTGCATCAACC 57.014 30.769 0.00 0.00 40.34 3.77
4671 7888 8.507249 GTTCTACATGCTGAAACTCTACAAAAT 58.493 33.333 0.00 0.00 0.00 1.82
4713 7931 1.067142 AGTCGTAGAAATCAAGCGGCA 60.067 47.619 1.45 0.00 39.69 5.69
4714 7932 1.641577 AGTCGTAGAAATCAAGCGGC 58.358 50.000 0.00 0.00 39.69 6.53
4715 7933 4.288670 TCTAGTCGTAGAAATCAAGCGG 57.711 45.455 0.00 0.00 39.69 5.52
4726 7944 8.373992 GCAAACTTACAAGATTTCTAGTCGTAG 58.626 37.037 0.00 0.00 0.00 3.51
4738 7956 5.482908 AGAGACGATGCAAACTTACAAGAT 58.517 37.500 0.00 0.00 0.00 2.40
4741 7959 5.525745 TCAAAGAGACGATGCAAACTTACAA 59.474 36.000 0.00 0.00 0.00 2.41
4747 7965 4.410492 ACATCAAAGAGACGATGCAAAC 57.590 40.909 0.00 0.00 42.28 2.93
4755 7973 7.408132 TCTTAAGTGAAACATCAAAGAGACG 57.592 36.000 1.63 0.00 41.43 4.18
4764 7982 9.965824 TTCCAAGAATTTCTTAAGTGAAACATC 57.034 29.630 11.21 0.72 38.54 3.06
4948 9321 3.682718 CGAGTGGATTGGGCTCAAATAGT 60.683 47.826 1.42 0.00 36.36 2.12
4983 9380 0.326264 AATGGGCAGCTTCGTTCTCT 59.674 50.000 0.00 0.00 0.00 3.10
5131 10447 3.960002 GTGCGCTGTTATATAGTTTTGCG 59.040 43.478 9.73 0.00 44.10 4.85
5170 10495 2.210116 GTATGTATGCTGGACCGTTGG 58.790 52.381 0.00 0.00 0.00 3.77
5172 10497 3.838244 ATGTATGTATGCTGGACCGTT 57.162 42.857 0.00 0.00 0.00 4.44
5182 10507 6.367422 TGTGTGTGTGTGTGTATGTATGTATG 59.633 38.462 0.00 0.00 0.00 2.39
5186 10511 4.509600 TGTGTGTGTGTGTGTGTATGTATG 59.490 41.667 0.00 0.00 0.00 2.39
5188 10513 3.866327 GTGTGTGTGTGTGTGTGTATGTA 59.134 43.478 0.00 0.00 0.00 2.29
5191 10516 2.979240 TGTGTGTGTGTGTGTGTGTAT 58.021 42.857 0.00 0.00 0.00 2.29
5192 10517 2.457366 TGTGTGTGTGTGTGTGTGTA 57.543 45.000 0.00 0.00 0.00 2.90
5193 10518 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
5194 10519 2.477694 GGATTGTGTGTGTGTGTGTGTG 60.478 50.000 0.00 0.00 0.00 3.82
5196 10521 2.016318 AGGATTGTGTGTGTGTGTGTG 58.984 47.619 0.00 0.00 0.00 3.82
5197 10522 2.418368 AGGATTGTGTGTGTGTGTGT 57.582 45.000 0.00 0.00 0.00 3.72
5199 10524 2.878406 GCTTAGGATTGTGTGTGTGTGT 59.122 45.455 0.00 0.00 0.00 3.72
5200 10525 3.141398 AGCTTAGGATTGTGTGTGTGTG 58.859 45.455 0.00 0.00 0.00 3.82
5201 10526 3.492102 AGCTTAGGATTGTGTGTGTGT 57.508 42.857 0.00 0.00 0.00 3.72
5202 10527 5.617751 GCTTTAGCTTAGGATTGTGTGTGTG 60.618 44.000 0.00 0.00 38.21 3.82
5205 10530 4.010349 GGCTTTAGCTTAGGATTGTGTGT 58.990 43.478 0.00 0.00 41.70 3.72
5206 10531 3.063997 CGGCTTTAGCTTAGGATTGTGTG 59.936 47.826 0.00 0.00 41.70 3.82
5208 10533 2.614057 CCGGCTTTAGCTTAGGATTGTG 59.386 50.000 0.00 0.00 41.70 3.33
5210 10535 1.604278 GCCGGCTTTAGCTTAGGATTG 59.396 52.381 22.15 0.00 41.70 2.67
5211 10536 1.211949 TGCCGGCTTTAGCTTAGGATT 59.788 47.619 29.70 0.00 41.70 3.01
5216 10541 0.462375 TCGATGCCGGCTTTAGCTTA 59.538 50.000 29.70 4.25 41.70 3.09
5232 10558 0.958876 TGAACGGTGAGCTAGCTCGA 60.959 55.000 33.55 22.27 45.48 4.04
5255 10588 3.558411 GCACTGCTGCCGATCGAC 61.558 66.667 18.66 5.29 37.45 4.20
5260 10593 2.036571 CATCTTGCACTGCTGCCGA 61.037 57.895 1.98 0.00 43.51 5.54
5274 10607 1.756408 CTCGCTGCCCATCTCCATCT 61.756 60.000 0.00 0.00 0.00 2.90
5281 10614 3.344215 CATCGCTCGCTGCCCATC 61.344 66.667 0.00 0.00 38.78 3.51
5365 10698 1.898574 CTTGAACTTGGTGCGCCCT 60.899 57.895 15.15 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.