Multiple sequence alignment - TraesCS5B01G309900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G309900 chr5B 100.000 3455 0 0 1 3455 491951339 491954793 0.000000e+00 6381.0
1 TraesCS5B01G309900 chr5B 94.692 584 23 4 2874 3455 607842296 607842873 0.000000e+00 900.0
2 TraesCS5B01G309900 chr5B 78.446 1197 213 35 1206 2372 491879570 491880751 0.000000e+00 739.0
3 TraesCS5B01G309900 chr5B 81.910 199 25 3 2876 3073 667526115 667526303 1.280000e-34 158.0
4 TraesCS5B01G309900 chr5B 82.759 174 27 3 2881 3052 622342352 622342524 5.970000e-33 152.0
5 TraesCS5B01G309900 chr5B 82.517 143 15 2 2876 3018 666810876 666811008 2.180000e-22 117.0
6 TraesCS5B01G309900 chr5D 93.769 2279 99 20 586 2861 410200322 410202560 0.000000e+00 3382.0
7 TraesCS5B01G309900 chr5D 78.542 1468 249 40 1000 2442 545207499 545208925 0.000000e+00 905.0
8 TraesCS5B01G309900 chr5D 78.619 1202 223 26 1206 2381 410075766 410076959 0.000000e+00 765.0
9 TraesCS5B01G309900 chr5D 84.738 439 35 13 22 443 410192264 410192687 8.920000e-111 411.0
10 TraesCS5B01G309900 chr5D 80.583 309 33 12 1905 2204 31268953 31268663 2.700000e-51 213.0
11 TraesCS5B01G309900 chr5D 91.406 128 6 2 473 599 410199241 410199364 1.650000e-38 171.0
12 TraesCS5B01G309900 chr5A 91.256 1967 90 22 753 2694 521696243 521698152 0.000000e+00 2604.0
13 TraesCS5B01G309900 chr5A 94.188 585 22 6 2874 3455 53584592 53585167 0.000000e+00 881.0
14 TraesCS5B01G309900 chr5A 79.040 1188 218 26 1208 2372 521358438 521359617 0.000000e+00 785.0
15 TraesCS5B01G309900 chr5A 88.690 168 10 4 329 492 521695524 521695686 2.720000e-46 196.0
16 TraesCS5B01G309900 chr5A 87.755 147 6 4 2731 2871 521698221 521698361 9.920000e-36 161.0
17 TraesCS5B01G309900 chr1B 97.423 582 13 2 2874 3455 51319791 51320370 0.000000e+00 990.0
18 TraesCS5B01G309900 chr3B 95.548 584 22 3 2874 3455 386593697 386594278 0.000000e+00 931.0
19 TraesCS5B01G309900 chr2B 95.034 584 22 5 2874 3455 44121164 44121742 0.000000e+00 911.0
20 TraesCS5B01G309900 chr7A 85.172 290 32 8 1903 2184 635102452 635102738 1.570000e-73 287.0
21 TraesCS5B01G309900 chr1A 84.615 286 38 5 1903 2184 9538675 9538392 2.630000e-71 279.0
22 TraesCS5B01G309900 chr2D 85.537 242 19 4 1901 2129 39165056 39164818 4.460000e-59 239.0
23 TraesCS5B01G309900 chr4D 88.679 106 12 0 1901 2006 84468997 84469102 2.800000e-26 130.0
24 TraesCS5B01G309900 chr6D 87.736 106 13 0 1901 2006 409497632 409497737 1.300000e-24 124.0
25 TraesCS5B01G309900 chr2A 86.275 102 4 4 3364 3455 171058099 171057998 6.100000e-18 102.0
26 TraesCS5B01G309900 chr3A 80.342 117 21 2 2199 2314 508534153 508534038 1.710000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G309900 chr5B 491951339 491954793 3454 False 6381.0 6381 100.000000 1 3455 1 chr5B.!!$F2 3454
1 TraesCS5B01G309900 chr5B 607842296 607842873 577 False 900.0 900 94.692000 2874 3455 1 chr5B.!!$F3 581
2 TraesCS5B01G309900 chr5B 491879570 491880751 1181 False 739.0 739 78.446000 1206 2372 1 chr5B.!!$F1 1166
3 TraesCS5B01G309900 chr5D 410199241 410202560 3319 False 1776.5 3382 92.587500 473 2861 2 chr5D.!!$F4 2388
4 TraesCS5B01G309900 chr5D 545207499 545208925 1426 False 905.0 905 78.542000 1000 2442 1 chr5D.!!$F3 1442
5 TraesCS5B01G309900 chr5D 410075766 410076959 1193 False 765.0 765 78.619000 1206 2381 1 chr5D.!!$F1 1175
6 TraesCS5B01G309900 chr5A 521695524 521698361 2837 False 987.0 2604 89.233667 329 2871 3 chr5A.!!$F3 2542
7 TraesCS5B01G309900 chr5A 53584592 53585167 575 False 881.0 881 94.188000 2874 3455 1 chr5A.!!$F1 581
8 TraesCS5B01G309900 chr5A 521358438 521359617 1179 False 785.0 785 79.040000 1208 2372 1 chr5A.!!$F2 1164
9 TraesCS5B01G309900 chr1B 51319791 51320370 579 False 990.0 990 97.423000 2874 3455 1 chr1B.!!$F1 581
10 TraesCS5B01G309900 chr3B 386593697 386594278 581 False 931.0 931 95.548000 2874 3455 1 chr3B.!!$F1 581
11 TraesCS5B01G309900 chr2B 44121164 44121742 578 False 911.0 911 95.034000 2874 3455 1 chr2B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.109597 GTTGCCCATGAAGAACAGCG 60.110 55.0 0.0 0.0 0.00 5.18 F
1140 2448 0.037303 TCACGTTCTACCTCGTCCCT 59.963 55.0 0.0 0.0 38.23 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 2886 1.149148 GGTTGAAGAGCTTGACGTCC 58.851 55.0 14.12 0.0 0.0 4.79 R
2763 4185 0.404040 GTCAGGTCATTTCCCCCACA 59.596 55.0 0.00 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.708051 ACTACCGAGACAACATCGAGA 58.292 47.619 0.00 0.00 42.76 4.04
21 22 3.079578 ACTACCGAGACAACATCGAGAA 58.920 45.455 0.00 0.00 42.76 2.87
22 23 3.504906 ACTACCGAGACAACATCGAGAAA 59.495 43.478 0.00 0.00 42.76 2.52
23 24 3.380479 ACCGAGACAACATCGAGAAAA 57.620 42.857 0.00 0.00 42.76 2.29
24 25 3.318017 ACCGAGACAACATCGAGAAAAG 58.682 45.455 0.00 0.00 42.76 2.27
25 26 3.005472 ACCGAGACAACATCGAGAAAAGA 59.995 43.478 0.00 0.00 42.76 2.52
26 27 4.177026 CCGAGACAACATCGAGAAAAGAT 58.823 43.478 0.00 0.00 42.76 2.40
27 28 4.627467 CCGAGACAACATCGAGAAAAGATT 59.373 41.667 0.00 0.00 42.76 2.40
28 29 5.445142 CCGAGACAACATCGAGAAAAGATTG 60.445 44.000 0.00 0.00 42.76 2.67
29 30 5.346011 CGAGACAACATCGAGAAAAGATTGA 59.654 40.000 0.00 0.00 42.76 2.57
30 31 6.473397 AGACAACATCGAGAAAAGATTGAC 57.527 37.500 0.00 0.00 0.00 3.18
31 32 5.119279 AGACAACATCGAGAAAAGATTGACG 59.881 40.000 0.00 0.00 0.00 4.35
32 33 4.988540 ACAACATCGAGAAAAGATTGACGA 59.011 37.500 0.00 0.00 0.00 4.20
33 34 5.639506 ACAACATCGAGAAAAGATTGACGAT 59.360 36.000 0.00 0.00 40.26 3.73
34 35 5.957910 ACATCGAGAAAAGATTGACGATC 57.042 39.130 0.00 0.00 38.17 3.69
35 36 5.410924 ACATCGAGAAAAGATTGACGATCA 58.589 37.500 5.46 0.00 38.17 2.92
36 37 5.289675 ACATCGAGAAAAGATTGACGATCAC 59.710 40.000 5.46 0.00 38.17 3.06
37 38 3.851969 TCGAGAAAAGATTGACGATCACG 59.148 43.478 5.46 0.00 45.75 4.35
38 39 3.540359 CGAGAAAAGATTGACGATCACGC 60.540 47.826 5.46 0.00 43.96 5.34
39 40 3.589988 AGAAAAGATTGACGATCACGCT 58.410 40.909 5.46 0.00 43.96 5.07
40 41 4.744570 AGAAAAGATTGACGATCACGCTA 58.255 39.130 5.46 0.00 43.96 4.26
41 42 5.168569 AGAAAAGATTGACGATCACGCTAA 58.831 37.500 5.46 0.00 43.96 3.09
42 43 5.289675 AGAAAAGATTGACGATCACGCTAAG 59.710 40.000 5.46 0.00 43.96 2.18
43 44 2.464865 AGATTGACGATCACGCTAAGC 58.535 47.619 5.46 0.00 43.96 3.09
44 45 2.159240 AGATTGACGATCACGCTAAGCA 60.159 45.455 5.46 0.00 43.96 3.91
45 46 2.293677 TTGACGATCACGCTAAGCAT 57.706 45.000 0.00 0.00 43.96 3.79
46 47 3.430333 TTGACGATCACGCTAAGCATA 57.570 42.857 0.00 0.00 43.96 3.14
47 48 3.643159 TGACGATCACGCTAAGCATAT 57.357 42.857 0.00 0.00 43.96 1.78
48 49 3.565516 TGACGATCACGCTAAGCATATC 58.434 45.455 0.00 0.00 43.96 1.63
49 50 2.585845 ACGATCACGCTAAGCATATCG 58.414 47.619 10.68 10.68 43.96 2.92
50 51 1.914051 CGATCACGCTAAGCATATCGG 59.086 52.381 0.00 0.00 33.56 4.18
51 52 2.668556 CGATCACGCTAAGCATATCGGT 60.669 50.000 0.00 0.00 33.56 4.69
52 53 2.134201 TCACGCTAAGCATATCGGTG 57.866 50.000 0.00 0.00 0.00 4.94
53 54 1.407618 TCACGCTAAGCATATCGGTGT 59.592 47.619 0.00 0.00 0.00 4.16
54 55 1.522676 CACGCTAAGCATATCGGTGTG 59.477 52.381 0.00 0.00 33.30 3.82
55 56 1.139989 CGCTAAGCATATCGGTGTGG 58.860 55.000 0.00 0.00 0.00 4.17
56 57 1.512926 GCTAAGCATATCGGTGTGGG 58.487 55.000 0.00 0.00 0.00 4.61
57 58 1.070134 GCTAAGCATATCGGTGTGGGA 59.930 52.381 0.00 0.00 0.00 4.37
58 59 2.868044 GCTAAGCATATCGGTGTGGGAG 60.868 54.545 0.00 0.00 0.00 4.30
59 60 0.469917 AAGCATATCGGTGTGGGAGG 59.530 55.000 0.00 0.00 0.00 4.30
60 61 1.071471 GCATATCGGTGTGGGAGGG 59.929 63.158 0.00 0.00 0.00 4.30
61 62 1.407656 GCATATCGGTGTGGGAGGGA 61.408 60.000 0.00 0.00 0.00 4.20
62 63 0.681733 CATATCGGTGTGGGAGGGAG 59.318 60.000 0.00 0.00 0.00 4.30
63 64 0.471971 ATATCGGTGTGGGAGGGAGG 60.472 60.000 0.00 0.00 0.00 4.30
64 65 2.599139 TATCGGTGTGGGAGGGAGGG 62.599 65.000 0.00 0.00 0.00 4.30
72 73 4.153330 GGAGGGAGGGCGGGTCTA 62.153 72.222 0.00 0.00 0.00 2.59
73 74 2.522193 GAGGGAGGGCGGGTCTAG 60.522 72.222 0.00 0.00 0.00 2.43
74 75 3.028098 AGGGAGGGCGGGTCTAGA 61.028 66.667 0.00 0.00 0.00 2.43
75 76 2.201771 GGGAGGGCGGGTCTAGAT 59.798 66.667 0.00 0.00 0.00 1.98
76 77 1.072505 AGGGAGGGCGGGTCTAGATA 61.073 60.000 0.00 0.00 0.00 1.98
77 78 0.612453 GGGAGGGCGGGTCTAGATAG 60.612 65.000 0.00 0.00 0.00 2.08
78 79 0.612453 GGAGGGCGGGTCTAGATAGG 60.612 65.000 0.00 0.00 0.00 2.57
79 80 1.228925 AGGGCGGGTCTAGATAGGC 60.229 63.158 0.00 2.92 0.00 3.93
80 81 1.533273 GGGCGGGTCTAGATAGGCA 60.533 63.158 16.25 0.00 0.00 4.75
81 82 1.536943 GGGCGGGTCTAGATAGGCAG 61.537 65.000 16.25 0.51 0.00 4.85
82 83 0.828343 GGCGGGTCTAGATAGGCAGT 60.828 60.000 12.11 0.00 0.00 4.40
83 84 0.599060 GCGGGTCTAGATAGGCAGTC 59.401 60.000 0.00 0.00 0.00 3.51
84 85 1.982660 CGGGTCTAGATAGGCAGTCA 58.017 55.000 0.00 0.00 0.00 3.41
85 86 2.520069 CGGGTCTAGATAGGCAGTCAT 58.480 52.381 0.00 0.00 0.00 3.06
86 87 2.230025 CGGGTCTAGATAGGCAGTCATG 59.770 54.545 0.00 0.00 0.00 3.07
98 99 2.320745 CAGTCATGCTAGCATCACCA 57.679 50.000 25.92 9.25 33.90 4.17
99 100 2.635714 CAGTCATGCTAGCATCACCAA 58.364 47.619 25.92 8.35 33.90 3.67
100 101 3.011818 CAGTCATGCTAGCATCACCAAA 58.988 45.455 25.92 6.70 33.90 3.28
101 102 3.012518 AGTCATGCTAGCATCACCAAAC 58.987 45.455 25.92 16.56 33.90 2.93
102 103 2.098117 GTCATGCTAGCATCACCAAACC 59.902 50.000 27.34 0.00 33.90 3.27
103 104 2.093890 CATGCTAGCATCACCAAACCA 58.906 47.619 27.34 0.00 33.90 3.67
104 105 2.512692 TGCTAGCATCACCAAACCAT 57.487 45.000 14.93 0.00 0.00 3.55
105 106 2.093890 TGCTAGCATCACCAAACCATG 58.906 47.619 14.93 0.00 0.00 3.66
106 107 2.094675 GCTAGCATCACCAAACCATGT 58.905 47.619 10.63 0.00 0.00 3.21
107 108 2.098117 GCTAGCATCACCAAACCATGTC 59.902 50.000 10.63 0.00 0.00 3.06
108 109 1.167851 AGCATCACCAAACCATGTCG 58.832 50.000 0.00 0.00 0.00 4.35
109 110 1.164411 GCATCACCAAACCATGTCGA 58.836 50.000 0.00 0.00 0.00 4.20
110 111 1.745087 GCATCACCAAACCATGTCGAT 59.255 47.619 0.00 0.00 0.00 3.59
111 112 2.478370 GCATCACCAAACCATGTCGATG 60.478 50.000 0.00 0.00 38.17 3.84
112 113 2.849294 TCACCAAACCATGTCGATGA 57.151 45.000 0.00 0.00 0.00 2.92
113 114 2.422597 TCACCAAACCATGTCGATGAC 58.577 47.619 0.00 0.00 0.00 3.06
114 115 2.038426 TCACCAAACCATGTCGATGACT 59.962 45.455 0.00 0.00 33.15 3.41
115 116 2.813754 CACCAAACCATGTCGATGACTT 59.186 45.455 0.00 0.00 33.15 3.01
116 117 3.253188 CACCAAACCATGTCGATGACTTT 59.747 43.478 0.00 0.00 33.15 2.66
117 118 3.253188 ACCAAACCATGTCGATGACTTTG 59.747 43.478 0.00 1.44 33.15 2.77
118 119 3.236816 CAAACCATGTCGATGACTTTGC 58.763 45.455 0.00 0.00 33.15 3.68
119 120 2.479566 ACCATGTCGATGACTTTGCT 57.520 45.000 0.00 0.00 33.15 3.91
120 121 2.783135 ACCATGTCGATGACTTTGCTT 58.217 42.857 0.00 0.00 33.15 3.91
121 122 2.485426 ACCATGTCGATGACTTTGCTTG 59.515 45.455 0.00 0.00 33.15 4.01
122 123 2.512885 CATGTCGATGACTTTGCTTGC 58.487 47.619 0.00 0.00 33.15 4.01
123 124 0.512518 TGTCGATGACTTTGCTTGCG 59.487 50.000 0.00 0.00 33.15 4.85
124 125 0.790207 GTCGATGACTTTGCTTGCGA 59.210 50.000 0.00 0.00 0.00 5.10
125 126 1.070821 TCGATGACTTTGCTTGCGAG 58.929 50.000 0.00 0.00 0.00 5.03
126 127 0.792640 CGATGACTTTGCTTGCGAGT 59.207 50.000 2.14 1.99 0.00 4.18
127 128 1.201855 CGATGACTTTGCTTGCGAGTC 60.202 52.381 16.63 16.63 40.09 3.36
128 129 2.072298 GATGACTTTGCTTGCGAGTCT 58.928 47.619 20.98 11.99 40.28 3.24
129 130 1.502231 TGACTTTGCTTGCGAGTCTC 58.498 50.000 20.98 0.00 40.28 3.36
130 131 1.202521 TGACTTTGCTTGCGAGTCTCA 60.203 47.619 20.98 7.76 40.28 3.27
131 132 1.867233 GACTTTGCTTGCGAGTCTCAA 59.133 47.619 16.37 0.00 37.43 3.02
132 133 2.287915 GACTTTGCTTGCGAGTCTCAAA 59.712 45.455 16.37 4.17 37.43 2.69
133 134 2.289002 ACTTTGCTTGCGAGTCTCAAAG 59.711 45.455 21.65 21.65 45.26 2.77
134 135 2.238942 TTGCTTGCGAGTCTCAAAGA 57.761 45.000 13.87 0.76 0.00 2.52
135 136 2.238942 TGCTTGCGAGTCTCAAAGAA 57.761 45.000 13.87 3.40 0.00 2.52
136 137 2.560504 TGCTTGCGAGTCTCAAAGAAA 58.439 42.857 13.87 1.97 0.00 2.52
137 138 2.545526 TGCTTGCGAGTCTCAAAGAAAG 59.454 45.455 13.87 3.77 0.00 2.62
138 139 2.545946 GCTTGCGAGTCTCAAAGAAAGT 59.454 45.455 13.87 0.00 0.00 2.66
139 140 3.605692 GCTTGCGAGTCTCAAAGAAAGTG 60.606 47.826 13.87 0.00 0.00 3.16
140 141 2.483876 TGCGAGTCTCAAAGAAAGTGG 58.516 47.619 0.00 0.00 0.00 4.00
141 142 2.158957 TGCGAGTCTCAAAGAAAGTGGT 60.159 45.455 0.00 0.00 0.00 4.16
142 143 2.872858 GCGAGTCTCAAAGAAAGTGGTT 59.127 45.455 0.00 0.00 0.00 3.67
143 144 4.056050 GCGAGTCTCAAAGAAAGTGGTTA 58.944 43.478 0.00 0.00 0.00 2.85
144 145 4.084485 GCGAGTCTCAAAGAAAGTGGTTAC 60.084 45.833 0.00 0.00 0.00 2.50
145 146 4.448060 CGAGTCTCAAAGAAAGTGGTTACC 59.552 45.833 0.00 0.00 0.00 2.85
146 147 5.365619 GAGTCTCAAAGAAAGTGGTTACCA 58.634 41.667 0.00 0.00 0.00 3.25
147 148 5.751586 AGTCTCAAAGAAAGTGGTTACCAA 58.248 37.500 5.33 0.00 34.18 3.67
148 149 6.184789 AGTCTCAAAGAAAGTGGTTACCAAA 58.815 36.000 5.33 0.00 34.18 3.28
149 150 6.318900 AGTCTCAAAGAAAGTGGTTACCAAAG 59.681 38.462 5.33 0.00 34.18 2.77
150 151 6.317893 GTCTCAAAGAAAGTGGTTACCAAAGA 59.682 38.462 5.33 0.00 34.18 2.52
151 152 6.887545 TCTCAAAGAAAGTGGTTACCAAAGAA 59.112 34.615 5.33 0.00 34.18 2.52
152 153 7.067008 TCTCAAAGAAAGTGGTTACCAAAGAAG 59.933 37.037 5.33 0.00 34.18 2.85
153 154 6.887545 TCAAAGAAAGTGGTTACCAAAGAAGA 59.112 34.615 5.33 0.00 34.18 2.87
154 155 6.694877 AAGAAAGTGGTTACCAAAGAAGAC 57.305 37.500 5.33 0.00 34.18 3.01
155 156 4.814771 AGAAAGTGGTTACCAAAGAAGACG 59.185 41.667 5.33 0.00 34.18 4.18
156 157 4.411256 AAGTGGTTACCAAAGAAGACGA 57.589 40.909 5.33 0.00 34.18 4.20
157 158 4.618920 AGTGGTTACCAAAGAAGACGAT 57.381 40.909 5.33 0.00 34.18 3.73
158 159 4.315803 AGTGGTTACCAAAGAAGACGATG 58.684 43.478 5.33 0.00 34.18 3.84
159 160 4.062991 GTGGTTACCAAAGAAGACGATGT 58.937 43.478 5.33 0.00 34.18 3.06
160 161 4.514066 GTGGTTACCAAAGAAGACGATGTT 59.486 41.667 5.33 0.00 34.18 2.71
161 162 4.513692 TGGTTACCAAAGAAGACGATGTTG 59.486 41.667 0.00 0.00 0.00 3.33
162 163 4.464112 GTTACCAAAGAAGACGATGTTGC 58.536 43.478 0.00 0.00 0.00 4.17
163 164 1.880027 ACCAAAGAAGACGATGTTGCC 59.120 47.619 0.00 0.00 0.00 4.52
164 165 1.135972 CCAAAGAAGACGATGTTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
165 166 1.531149 CAAAGAAGACGATGTTGCCGT 59.469 47.619 0.00 0.00 43.56 5.68
170 171 2.736995 ACGATGTTGCCGTCACCG 60.737 61.111 0.00 0.00 34.97 4.94
171 172 2.431771 CGATGTTGCCGTCACCGA 60.432 61.111 0.00 0.00 35.63 4.69
172 173 1.809619 CGATGTTGCCGTCACCGAT 60.810 57.895 0.00 0.00 35.63 4.18
173 174 1.715585 GATGTTGCCGTCACCGATG 59.284 57.895 0.00 0.00 35.63 3.84
174 175 2.309764 GATGTTGCCGTCACCGATGC 62.310 60.000 0.00 0.00 35.63 3.91
175 176 3.047280 GTTGCCGTCACCGATGCA 61.047 61.111 0.00 0.00 35.63 3.96
176 177 3.047280 TTGCCGTCACCGATGCAC 61.047 61.111 0.00 0.00 32.26 4.57
177 178 3.816367 TTGCCGTCACCGATGCACA 62.816 57.895 0.00 0.00 32.26 4.57
178 179 2.819595 GCCGTCACCGATGCACAT 60.820 61.111 0.00 0.00 35.63 3.21
179 180 3.092403 CCGTCACCGATGCACATG 58.908 61.111 0.00 0.00 35.63 3.21
180 181 2.463620 CCGTCACCGATGCACATGG 61.464 63.158 0.00 0.00 35.63 3.66
181 182 1.447663 CGTCACCGATGCACATGGA 60.448 57.895 7.64 0.00 35.63 3.41
182 183 1.018752 CGTCACCGATGCACATGGAA 61.019 55.000 7.64 0.00 35.63 3.53
183 184 0.447801 GTCACCGATGCACATGGAAC 59.552 55.000 7.64 2.49 0.00 3.62
196 197 3.261441 TGGAACAACGTCGACAGAC 57.739 52.632 17.16 5.06 38.86 3.51
205 206 3.642901 GTCGACAGACGGCACATAT 57.357 52.632 11.55 0.00 46.56 1.78
206 207 2.768833 GTCGACAGACGGCACATATA 57.231 50.000 11.55 0.00 46.56 0.86
207 208 3.074504 GTCGACAGACGGCACATATAA 57.925 47.619 11.55 0.00 46.56 0.98
208 209 2.787680 GTCGACAGACGGCACATATAAC 59.212 50.000 11.55 0.00 46.56 1.89
209 210 2.124903 CGACAGACGGCACATATAACC 58.875 52.381 0.00 0.00 38.46 2.85
210 211 2.480587 CGACAGACGGCACATATAACCA 60.481 50.000 0.00 0.00 38.46 3.67
211 212 3.527533 GACAGACGGCACATATAACCAA 58.472 45.455 0.00 0.00 0.00 3.67
212 213 4.127171 GACAGACGGCACATATAACCAAT 58.873 43.478 0.00 0.00 0.00 3.16
213 214 4.127171 ACAGACGGCACATATAACCAATC 58.873 43.478 0.00 0.00 0.00 2.67
214 215 4.141711 ACAGACGGCACATATAACCAATCT 60.142 41.667 0.00 0.00 0.00 2.40
215 216 4.212004 CAGACGGCACATATAACCAATCTG 59.788 45.833 0.00 0.00 0.00 2.90
216 217 4.127171 GACGGCACATATAACCAATCTGT 58.873 43.478 0.00 0.00 0.00 3.41
217 218 4.523083 ACGGCACATATAACCAATCTGTT 58.477 39.130 0.00 0.00 0.00 3.16
218 219 4.335315 ACGGCACATATAACCAATCTGTTG 59.665 41.667 0.00 0.00 35.05 3.33
219 220 4.610945 GGCACATATAACCAATCTGTTGC 58.389 43.478 0.00 0.00 33.90 4.17
220 221 4.499696 GGCACATATAACCAATCTGTTGCC 60.500 45.833 0.00 0.00 34.72 4.52
221 222 4.499696 GCACATATAACCAATCTGTTGCCC 60.500 45.833 0.00 0.00 33.90 5.36
222 223 4.644234 CACATATAACCAATCTGTTGCCCA 59.356 41.667 0.00 0.00 33.90 5.36
223 224 5.302568 CACATATAACCAATCTGTTGCCCAT 59.697 40.000 0.00 0.00 33.90 4.00
224 225 5.302568 ACATATAACCAATCTGTTGCCCATG 59.697 40.000 0.00 0.00 33.90 3.66
225 226 2.307496 AACCAATCTGTTGCCCATGA 57.693 45.000 0.00 0.00 33.90 3.07
226 227 2.307496 ACCAATCTGTTGCCCATGAA 57.693 45.000 0.00 0.00 33.90 2.57
227 228 2.173519 ACCAATCTGTTGCCCATGAAG 58.826 47.619 0.00 0.00 33.90 3.02
228 229 2.225091 ACCAATCTGTTGCCCATGAAGA 60.225 45.455 0.00 0.00 33.90 2.87
229 230 2.827322 CCAATCTGTTGCCCATGAAGAA 59.173 45.455 0.00 0.00 33.90 2.52
230 231 3.367703 CCAATCTGTTGCCCATGAAGAAC 60.368 47.826 0.00 0.00 33.90 3.01
231 232 2.655090 TCTGTTGCCCATGAAGAACA 57.345 45.000 0.00 0.00 0.00 3.18
232 233 2.507484 TCTGTTGCCCATGAAGAACAG 58.493 47.619 17.75 17.75 44.39 3.16
233 234 0.961019 TGTTGCCCATGAAGAACAGC 59.039 50.000 0.00 0.00 0.00 4.40
234 235 0.109597 GTTGCCCATGAAGAACAGCG 60.110 55.000 0.00 0.00 0.00 5.18
235 236 1.243342 TTGCCCATGAAGAACAGCGG 61.243 55.000 0.00 0.00 0.00 5.52
236 237 2.409870 GCCCATGAAGAACAGCGGG 61.410 63.158 0.00 0.00 43.82 6.13
237 238 1.750399 CCCATGAAGAACAGCGGGG 60.750 63.158 0.00 0.00 39.87 5.73
238 239 1.002134 CCATGAAGAACAGCGGGGT 60.002 57.895 0.00 0.00 0.00 4.95
239 240 1.026718 CCATGAAGAACAGCGGGGTC 61.027 60.000 0.00 0.00 0.00 4.46
240 241 0.321564 CATGAAGAACAGCGGGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
241 242 0.400213 ATGAAGAACAGCGGGGTCAA 59.600 50.000 0.00 0.00 0.00 3.18
242 243 0.181587 TGAAGAACAGCGGGGTCAAA 59.818 50.000 0.00 0.00 0.00 2.69
243 244 1.314730 GAAGAACAGCGGGGTCAAAA 58.685 50.000 0.00 0.00 0.00 2.44
244 245 1.679153 GAAGAACAGCGGGGTCAAAAA 59.321 47.619 0.00 0.00 0.00 1.94
245 246 1.995376 AGAACAGCGGGGTCAAAAAT 58.005 45.000 0.00 0.00 0.00 1.82
246 247 2.316108 AGAACAGCGGGGTCAAAAATT 58.684 42.857 0.00 0.00 0.00 1.82
247 248 3.492337 AGAACAGCGGGGTCAAAAATTA 58.508 40.909 0.00 0.00 0.00 1.40
248 249 3.254903 AGAACAGCGGGGTCAAAAATTAC 59.745 43.478 0.00 0.00 0.00 1.89
249 250 1.538075 ACAGCGGGGTCAAAAATTACG 59.462 47.619 0.00 0.00 0.00 3.18
250 251 1.135517 CAGCGGGGTCAAAAATTACGG 60.136 52.381 0.00 0.00 0.00 4.02
251 252 0.171679 GCGGGGTCAAAAATTACGGG 59.828 55.000 0.00 0.00 0.00 5.28
252 253 0.171679 CGGGGTCAAAAATTACGGGC 59.828 55.000 0.00 0.00 0.00 6.13
253 254 1.552578 GGGGTCAAAAATTACGGGCT 58.447 50.000 0.00 0.00 0.00 5.19
254 255 1.475280 GGGGTCAAAAATTACGGGCTC 59.525 52.381 0.00 0.00 0.00 4.70
255 256 1.475280 GGGTCAAAAATTACGGGCTCC 59.525 52.381 0.00 0.00 0.00 4.70
256 257 2.443416 GGTCAAAAATTACGGGCTCCT 58.557 47.619 0.00 0.00 0.00 3.69
257 258 2.422479 GGTCAAAAATTACGGGCTCCTC 59.578 50.000 0.00 0.00 0.00 3.71
258 259 3.078837 GTCAAAAATTACGGGCTCCTCA 58.921 45.455 0.00 0.00 0.00 3.86
259 260 3.504520 GTCAAAAATTACGGGCTCCTCAA 59.495 43.478 0.00 0.00 0.00 3.02
260 261 3.504520 TCAAAAATTACGGGCTCCTCAAC 59.495 43.478 0.00 0.00 0.00 3.18
261 262 2.871096 AAATTACGGGCTCCTCAACA 57.129 45.000 0.00 0.00 0.00 3.33
262 263 2.871096 AATTACGGGCTCCTCAACAA 57.129 45.000 0.00 0.00 0.00 2.83
263 264 2.109425 ATTACGGGCTCCTCAACAAC 57.891 50.000 0.00 0.00 0.00 3.32
264 265 0.320073 TTACGGGCTCCTCAACAACG 60.320 55.000 0.00 0.00 0.00 4.10
265 266 1.466025 TACGGGCTCCTCAACAACGT 61.466 55.000 0.00 0.00 36.93 3.99
266 267 1.597027 CGGGCTCCTCAACAACGTT 60.597 57.895 0.00 0.00 0.00 3.99
267 268 1.841663 CGGGCTCCTCAACAACGTTG 61.842 60.000 26.20 26.20 0.00 4.10
268 269 1.282875 GGCTCCTCAACAACGTTGC 59.717 57.895 27.61 11.15 0.00 4.17
269 270 1.444119 GGCTCCTCAACAACGTTGCA 61.444 55.000 27.61 11.25 0.00 4.08
270 271 0.317020 GCTCCTCAACAACGTTGCAC 60.317 55.000 27.61 5.11 0.00 4.57
271 272 1.013596 CTCCTCAACAACGTTGCACA 58.986 50.000 27.61 10.53 0.00 4.57
272 273 1.400142 CTCCTCAACAACGTTGCACAA 59.600 47.619 27.61 10.24 0.00 3.33
273 274 1.813178 TCCTCAACAACGTTGCACAAA 59.187 42.857 27.61 8.51 0.00 2.83
274 275 2.159448 TCCTCAACAACGTTGCACAAAG 60.159 45.455 27.61 16.62 0.00 2.77
275 276 1.583404 CTCAACAACGTTGCACAAAGC 59.417 47.619 27.61 0.00 45.96 3.51
284 285 2.551270 GCACAAAGCGTCACCGAG 59.449 61.111 0.00 0.00 35.63 4.63
285 286 1.954146 GCACAAAGCGTCACCGAGA 60.954 57.895 0.00 0.00 35.63 4.04
286 287 1.853319 CACAAAGCGTCACCGAGAC 59.147 57.895 0.00 0.00 44.02 3.36
298 299 5.110940 GTCACCGAGACAGGATTATAGTC 57.889 47.826 3.51 0.00 46.77 2.59
299 300 3.813724 TCACCGAGACAGGATTATAGTCG 59.186 47.826 0.00 0.00 37.36 4.18
300 301 3.833545 CCGAGACAGGATTATAGTCGG 57.166 52.381 0.00 0.00 39.52 4.79
301 302 3.181447 ACCGAGACAGGATTATAGTCGGA 60.181 47.826 14.35 0.00 46.69 4.55
302 303 3.437395 CCGAGACAGGATTATAGTCGGAG 59.563 52.174 1.64 0.00 46.69 4.63
303 304 3.437395 CGAGACAGGATTATAGTCGGAGG 59.563 52.174 0.00 0.00 37.36 4.30
304 305 4.653868 GAGACAGGATTATAGTCGGAGGA 58.346 47.826 0.00 0.00 37.36 3.71
305 306 4.400120 AGACAGGATTATAGTCGGAGGAC 58.600 47.826 0.00 0.00 43.76 3.85
317 318 4.601621 GTCGGAGGACTTGCTTAATTTC 57.398 45.455 0.00 0.00 40.15 2.17
318 319 3.374367 GTCGGAGGACTTGCTTAATTTCC 59.626 47.826 0.00 0.00 40.15 3.13
319 320 3.263425 TCGGAGGACTTGCTTAATTTCCT 59.737 43.478 0.00 0.00 39.51 3.36
320 321 3.375299 CGGAGGACTTGCTTAATTTCCTG 59.625 47.826 0.00 0.00 36.80 3.86
321 322 4.336280 GGAGGACTTGCTTAATTTCCTGT 58.664 43.478 0.00 0.00 36.80 4.00
322 323 4.396478 GGAGGACTTGCTTAATTTCCTGTC 59.604 45.833 0.00 0.00 36.80 3.51
323 324 4.985538 AGGACTTGCTTAATTTCCTGTCA 58.014 39.130 0.00 0.00 35.28 3.58
324 325 5.385198 AGGACTTGCTTAATTTCCTGTCAA 58.615 37.500 0.00 0.00 35.28 3.18
325 326 5.833131 AGGACTTGCTTAATTTCCTGTCAAA 59.167 36.000 0.00 0.00 35.28 2.69
326 327 5.920840 GGACTTGCTTAATTTCCTGTCAAAC 59.079 40.000 0.00 0.00 0.00 2.93
327 328 6.239036 GGACTTGCTTAATTTCCTGTCAAACT 60.239 38.462 0.00 0.00 0.00 2.66
331 332 5.157067 GCTTAATTTCCTGTCAAACTCAGC 58.843 41.667 0.00 0.00 0.00 4.26
339 340 1.610038 TGTCAAACTCAGCATTGCCTG 59.390 47.619 4.70 3.54 0.00 4.85
401 405 1.471287 TGGTCACCGACACGAGAATAG 59.529 52.381 0.00 0.00 33.68 1.73
406 410 1.132643 ACCGACACGAGAATAGCTCAC 59.867 52.381 0.00 0.00 44.15 3.51
415 419 0.872021 GAATAGCTCACACGGAGGCG 60.872 60.000 0.00 0.00 44.22 5.52
430 434 2.203337 GCGGGAGGCCATTGCATA 60.203 61.111 5.01 0.00 40.13 3.14
431 435 2.263741 GCGGGAGGCCATTGCATAG 61.264 63.158 5.01 0.00 40.13 2.23
432 436 1.149174 CGGGAGGCCATTGCATAGT 59.851 57.895 5.01 0.00 40.13 2.12
433 437 0.396435 CGGGAGGCCATTGCATAGTA 59.604 55.000 5.01 0.00 40.13 1.82
434 438 1.878102 CGGGAGGCCATTGCATAGTAC 60.878 57.143 5.01 0.00 40.13 2.73
436 440 2.551071 GGGAGGCCATTGCATAGTACTC 60.551 54.545 5.01 0.00 40.13 2.59
448 452 1.708822 TAGTACTCGTACGTGCGTCA 58.291 50.000 24.94 6.60 40.80 4.35
449 453 0.164647 AGTACTCGTACGTGCGTCAC 59.835 55.000 24.94 19.23 40.80 3.67
450 454 0.164647 GTACTCGTACGTGCGTCACT 59.835 55.000 24.94 8.95 31.34 3.41
451 455 0.439985 TACTCGTACGTGCGTCACTC 59.560 55.000 24.94 0.00 31.34 3.51
460 464 3.904571 ACGTGCGTCACTCACTTATAAA 58.095 40.909 0.00 0.00 32.54 1.40
521 525 3.977134 ACGTACTCAGTCTAGTCAGGA 57.023 47.619 0.00 0.00 0.00 3.86
544 549 3.838244 TTGGCTCCGCTACATTTATCT 57.162 42.857 0.00 0.00 0.00 1.98
552 557 6.347240 GCTCCGCTACATTTATCTCTGAATTG 60.347 42.308 0.00 0.00 0.00 2.32
557 562 7.010460 CGCTACATTTATCTCTGAATTGACACA 59.990 37.037 0.00 0.00 0.00 3.72
789 2083 3.883744 AAGTTGCCAGTCGCCTCGG 62.884 63.158 0.00 0.00 36.24 4.63
804 2098 2.502080 CGGCCGTATCGATCGAGC 60.502 66.667 23.84 19.69 0.00 5.03
906 2207 1.981636 CCTGCTCTGCTCTGAACCT 59.018 57.895 0.00 0.00 0.00 3.50
941 2243 4.374702 GCTCGGCACACAAGCACG 62.375 66.667 0.00 0.00 36.06 5.34
1140 2448 0.037303 TCACGTTCTACCTCGTCCCT 59.963 55.000 0.00 0.00 38.23 4.20
1149 2457 3.062466 CTCGTCCCTGTCTCCGCA 61.062 66.667 0.00 0.00 0.00 5.69
1236 2544 0.839853 ACTTCTCCTGCCTCAAGCCT 60.840 55.000 0.00 0.00 42.71 4.58
1239 2547 3.382803 CTCCTGCCTCAAGCCTCCG 62.383 68.421 0.00 0.00 42.71 4.63
1446 2754 0.392193 CGCACATGCTCTTCTTCCCT 60.392 55.000 1.82 0.00 39.32 4.20
2460 3830 2.849880 CCGTGTGGGAATAAATGCAG 57.150 50.000 0.00 0.00 38.47 4.41
2461 3831 1.405105 CCGTGTGGGAATAAATGCAGG 59.595 52.381 0.00 0.00 38.47 4.85
2462 3832 2.364632 CGTGTGGGAATAAATGCAGGA 58.635 47.619 0.00 0.00 0.00 3.86
2508 3878 2.915349 CATGCTAGCTTCCTCATGTGT 58.085 47.619 17.23 0.00 33.55 3.72
2509 3879 3.742327 GCATGCTAGCTTCCTCATGTGTA 60.742 47.826 17.23 0.00 38.72 2.90
2510 3880 3.808466 TGCTAGCTTCCTCATGTGTAG 57.192 47.619 17.23 0.00 0.00 2.74
2512 3882 2.432510 GCTAGCTTCCTCATGTGTAGGT 59.567 50.000 7.70 0.00 35.48 3.08
2514 3884 4.261825 GCTAGCTTCCTCATGTGTAGGTAG 60.262 50.000 7.70 18.98 38.99 3.18
2515 3885 3.714144 AGCTTCCTCATGTGTAGGTAGT 58.286 45.455 7.22 0.00 34.81 2.73
2516 3886 4.097418 AGCTTCCTCATGTGTAGGTAGTT 58.903 43.478 7.22 0.01 34.81 2.24
2517 3887 4.081420 AGCTTCCTCATGTGTAGGTAGTTG 60.081 45.833 7.22 0.00 34.81 3.16
2518 3888 4.759782 CTTCCTCATGTGTAGGTAGTTGG 58.240 47.826 0.00 0.00 35.48 3.77
2519 3889 3.104512 TCCTCATGTGTAGGTAGTTGGG 58.895 50.000 0.00 0.00 35.48 4.12
2520 3890 3.104512 CCTCATGTGTAGGTAGTTGGGA 58.895 50.000 0.00 0.00 0.00 4.37
2526 3896 4.088634 TGTGTAGGTAGTTGGGACGTATT 58.911 43.478 0.00 0.00 0.00 1.89
2575 3945 1.361668 CGACCATTCCACGAGCTTGG 61.362 60.000 5.79 1.37 38.10 3.61
2593 3964 1.339610 TGGATGTTTTTGCTTCCACCG 59.660 47.619 0.00 0.00 37.65 4.94
2655 4029 6.095440 AGTTCCAATATTTCCTTCCATGAACG 59.905 38.462 0.00 0.00 0.00 3.95
2697 4119 1.378882 CGATGGGTTGGTGCCATCTG 61.379 60.000 1.29 0.00 38.41 2.90
2739 4161 1.589716 GGTCAGCAACATGGTCCTGC 61.590 60.000 0.00 0.00 36.29 4.85
2756 4178 0.744874 TGCTAGATACGTGGAGCACC 59.255 55.000 0.00 0.00 39.93 5.01
2827 4255 1.301716 TGCCTGTGGAACGCTTCTC 60.302 57.895 0.00 0.00 42.39 2.87
2833 4261 2.125106 GGAACGCTTCTCCGGCAT 60.125 61.111 0.00 0.00 0.00 4.40
2835 4263 1.153549 GAACGCTTCTCCGGCATCT 60.154 57.895 0.00 0.00 0.00 2.90
2836 4264 0.102481 GAACGCTTCTCCGGCATCTA 59.898 55.000 0.00 0.00 0.00 1.98
2837 4265 0.179108 AACGCTTCTCCGGCATCTAC 60.179 55.000 0.00 0.00 0.00 2.59
2838 4266 1.038130 ACGCTTCTCCGGCATCTACT 61.038 55.000 0.00 0.00 0.00 2.57
2839 4267 0.318275 CGCTTCTCCGGCATCTACTC 60.318 60.000 0.00 0.00 0.00 2.59
2840 4268 0.032815 GCTTCTCCGGCATCTACTCC 59.967 60.000 0.00 0.00 0.00 3.85
2841 4269 1.698506 CTTCTCCGGCATCTACTCCT 58.301 55.000 0.00 0.00 0.00 3.69
2861 4289 3.323979 CCTAGTAAATGAGGCGGTACCAT 59.676 47.826 13.54 0.00 43.14 3.55
2872 4300 2.300723 GGCGGTACCATGTCCATACATA 59.699 50.000 13.54 0.00 44.70 2.29
2911 4339 7.718314 AGTGATACCAACACTAGTATGATACGA 59.282 37.037 8.94 0.00 45.10 3.43
3060 4489 0.102481 ACGTCATGTCACTATCGCCC 59.898 55.000 0.00 0.00 0.00 6.13
3160 4589 8.408601 ACATCATCCGATTCCAAAAGAAATAAG 58.591 33.333 0.00 0.00 38.21 1.73
3323 4754 3.850100 TTTGCTGCTGGGGCCCAAT 62.850 57.895 28.43 0.00 37.74 3.16
3324 4755 3.850100 TTGCTGCTGGGGCCCAATT 62.850 57.895 28.43 0.00 37.74 2.32
3409 4845 1.929836 GCCACGTGCAAATTTTGACAA 59.070 42.857 10.91 0.00 40.77 3.18
3430 4866 1.242989 TAAGCATTTTCGCCTGCACA 58.757 45.000 0.00 0.00 40.88 4.57
3431 4867 0.388659 AAGCATTTTCGCCTGCACAA 59.611 45.000 0.00 0.00 40.88 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.708051 TCTCGATGTTGTCTCGGTAGT 58.292 47.619 0.00 0.00 36.78 2.73
1 2 3.759527 TTCTCGATGTTGTCTCGGTAG 57.240 47.619 0.00 0.00 36.78 3.18
3 4 3.005472 TCTTTTCTCGATGTTGTCTCGGT 59.995 43.478 0.00 0.00 36.78 4.69
5 6 5.346011 TCAATCTTTTCTCGATGTTGTCTCG 59.654 40.000 0.00 0.00 37.47 4.04
6 7 6.529696 GTCAATCTTTTCTCGATGTTGTCTC 58.470 40.000 0.00 0.00 0.00 3.36
7 8 5.119279 CGTCAATCTTTTCTCGATGTTGTCT 59.881 40.000 0.00 0.00 0.00 3.41
8 9 5.118664 TCGTCAATCTTTTCTCGATGTTGTC 59.881 40.000 0.00 0.00 0.00 3.18
9 10 4.988540 TCGTCAATCTTTTCTCGATGTTGT 59.011 37.500 0.00 0.00 0.00 3.32
10 11 5.515548 TCGTCAATCTTTTCTCGATGTTG 57.484 39.130 0.00 0.00 0.00 3.33
11 12 5.869344 TGATCGTCAATCTTTTCTCGATGTT 59.131 36.000 0.00 0.00 37.97 2.71
12 13 5.289675 GTGATCGTCAATCTTTTCTCGATGT 59.710 40.000 0.00 0.00 37.97 3.06
13 14 5.553396 CGTGATCGTCAATCTTTTCTCGATG 60.553 44.000 0.00 0.00 37.97 3.84
14 15 4.500837 CGTGATCGTCAATCTTTTCTCGAT 59.499 41.667 0.00 0.00 39.98 3.59
15 16 3.851969 CGTGATCGTCAATCTTTTCTCGA 59.148 43.478 0.00 0.00 35.24 4.04
16 17 3.540359 GCGTGATCGTCAATCTTTTCTCG 60.540 47.826 0.00 0.00 39.49 4.04
17 18 3.614616 AGCGTGATCGTCAATCTTTTCTC 59.385 43.478 0.00 0.00 39.49 2.87
18 19 3.589988 AGCGTGATCGTCAATCTTTTCT 58.410 40.909 0.00 0.00 39.49 2.52
19 20 3.999229 AGCGTGATCGTCAATCTTTTC 57.001 42.857 0.00 0.00 39.49 2.29
20 21 4.201724 GCTTAGCGTGATCGTCAATCTTTT 60.202 41.667 0.00 0.00 39.49 2.27
21 22 3.307242 GCTTAGCGTGATCGTCAATCTTT 59.693 43.478 0.00 0.00 39.49 2.52
22 23 2.860735 GCTTAGCGTGATCGTCAATCTT 59.139 45.455 0.00 0.00 39.49 2.40
23 24 2.159240 TGCTTAGCGTGATCGTCAATCT 60.159 45.455 0.00 0.00 39.49 2.40
24 25 2.193447 TGCTTAGCGTGATCGTCAATC 58.807 47.619 0.00 0.00 39.49 2.67
25 26 2.293677 TGCTTAGCGTGATCGTCAAT 57.706 45.000 0.00 0.00 39.49 2.57
26 27 2.293677 ATGCTTAGCGTGATCGTCAA 57.706 45.000 0.00 0.00 39.49 3.18
27 28 3.565516 GATATGCTTAGCGTGATCGTCA 58.434 45.455 9.46 0.00 39.49 4.35
28 29 2.590276 CGATATGCTTAGCGTGATCGTC 59.410 50.000 19.82 7.07 39.49 4.20
29 30 2.585845 CGATATGCTTAGCGTGATCGT 58.414 47.619 19.82 0.30 39.49 3.73
30 31 1.914051 CCGATATGCTTAGCGTGATCG 59.086 52.381 20.62 20.62 35.50 3.69
31 32 2.663602 CACCGATATGCTTAGCGTGATC 59.336 50.000 14.96 6.02 35.50 2.92
32 33 2.035961 ACACCGATATGCTTAGCGTGAT 59.964 45.455 14.96 0.00 35.50 3.06
33 34 1.407618 ACACCGATATGCTTAGCGTGA 59.592 47.619 14.96 0.00 35.50 4.35
34 35 1.522676 CACACCGATATGCTTAGCGTG 59.477 52.381 14.96 14.31 35.50 5.34
35 36 1.538204 CCACACCGATATGCTTAGCGT 60.538 52.381 14.96 3.82 35.50 5.07
36 37 1.139989 CCACACCGATATGCTTAGCG 58.860 55.000 10.03 10.03 36.99 4.26
37 38 1.070134 TCCCACACCGATATGCTTAGC 59.930 52.381 0.00 0.00 0.00 3.09
38 39 2.289072 CCTCCCACACCGATATGCTTAG 60.289 54.545 0.00 0.00 0.00 2.18
39 40 1.691976 CCTCCCACACCGATATGCTTA 59.308 52.381 0.00 0.00 0.00 3.09
40 41 0.469917 CCTCCCACACCGATATGCTT 59.530 55.000 0.00 0.00 0.00 3.91
41 42 1.410850 CCCTCCCACACCGATATGCT 61.411 60.000 0.00 0.00 0.00 3.79
42 43 1.071471 CCCTCCCACACCGATATGC 59.929 63.158 0.00 0.00 0.00 3.14
43 44 0.681733 CTCCCTCCCACACCGATATG 59.318 60.000 0.00 0.00 0.00 1.78
44 45 0.471971 CCTCCCTCCCACACCGATAT 60.472 60.000 0.00 0.00 0.00 1.63
45 46 1.075525 CCTCCCTCCCACACCGATA 60.076 63.158 0.00 0.00 0.00 2.92
46 47 2.365635 CCTCCCTCCCACACCGAT 60.366 66.667 0.00 0.00 0.00 4.18
47 48 4.715130 CCCTCCCTCCCACACCGA 62.715 72.222 0.00 0.00 0.00 4.69
55 56 4.153330 TAGACCCGCCCTCCCTCC 62.153 72.222 0.00 0.00 0.00 4.30
56 57 2.374781 ATCTAGACCCGCCCTCCCTC 62.375 65.000 0.00 0.00 0.00 4.30
57 58 1.072505 TATCTAGACCCGCCCTCCCT 61.073 60.000 0.00 0.00 0.00 4.20
58 59 0.612453 CTATCTAGACCCGCCCTCCC 60.612 65.000 0.00 0.00 0.00 4.30
59 60 0.612453 CCTATCTAGACCCGCCCTCC 60.612 65.000 0.00 0.00 0.00 4.30
60 61 1.252215 GCCTATCTAGACCCGCCCTC 61.252 65.000 0.00 0.00 0.00 4.30
61 62 1.228925 GCCTATCTAGACCCGCCCT 60.229 63.158 0.00 0.00 0.00 5.19
62 63 1.533273 TGCCTATCTAGACCCGCCC 60.533 63.158 0.00 0.00 0.00 6.13
63 64 0.828343 ACTGCCTATCTAGACCCGCC 60.828 60.000 0.00 0.00 0.00 6.13
64 65 0.599060 GACTGCCTATCTAGACCCGC 59.401 60.000 0.00 0.00 0.00 6.13
65 66 1.982660 TGACTGCCTATCTAGACCCG 58.017 55.000 0.00 0.00 0.00 5.28
66 67 2.028567 GCATGACTGCCTATCTAGACCC 60.029 54.545 0.00 0.00 42.88 4.46
67 68 3.311486 GCATGACTGCCTATCTAGACC 57.689 52.381 0.00 0.00 42.88 3.85
79 80 2.320745 TGGTGATGCTAGCATGACTG 57.679 50.000 35.60 0.00 39.80 3.51
80 81 3.012518 GTTTGGTGATGCTAGCATGACT 58.987 45.455 35.60 16.76 39.80 3.41
81 82 2.098117 GGTTTGGTGATGCTAGCATGAC 59.902 50.000 34.16 32.86 39.30 3.06
82 83 2.290832 TGGTTTGGTGATGCTAGCATGA 60.291 45.455 34.16 24.23 36.70 3.07
83 84 2.093890 TGGTTTGGTGATGCTAGCATG 58.906 47.619 34.16 0.00 36.70 4.06
84 85 2.512692 TGGTTTGGTGATGCTAGCAT 57.487 45.000 29.97 29.97 39.69 3.79
85 86 2.093890 CATGGTTTGGTGATGCTAGCA 58.906 47.619 21.85 21.85 0.00 3.49
86 87 2.094675 ACATGGTTTGGTGATGCTAGC 58.905 47.619 8.10 8.10 0.00 3.42
87 88 2.352651 CGACATGGTTTGGTGATGCTAG 59.647 50.000 0.00 0.00 0.00 3.42
88 89 2.027653 TCGACATGGTTTGGTGATGCTA 60.028 45.455 0.00 0.00 0.00 3.49
89 90 1.167851 CGACATGGTTTGGTGATGCT 58.832 50.000 0.00 0.00 0.00 3.79
90 91 1.164411 TCGACATGGTTTGGTGATGC 58.836 50.000 0.00 0.00 0.00 3.91
91 92 3.009026 TCATCGACATGGTTTGGTGATG 58.991 45.455 0.00 0.27 40.05 3.07
92 93 3.009723 GTCATCGACATGGTTTGGTGAT 58.990 45.455 0.00 0.00 32.09 3.06
93 94 2.038426 AGTCATCGACATGGTTTGGTGA 59.962 45.455 0.00 0.00 34.60 4.02
94 95 2.426522 AGTCATCGACATGGTTTGGTG 58.573 47.619 0.00 0.00 34.60 4.17
95 96 2.859165 AGTCATCGACATGGTTTGGT 57.141 45.000 0.00 0.00 34.60 3.67
96 97 3.825308 CAAAGTCATCGACATGGTTTGG 58.175 45.455 0.00 0.00 34.17 3.28
97 98 3.058016 AGCAAAGTCATCGACATGGTTTG 60.058 43.478 0.00 0.00 37.38 2.93
98 99 3.149196 AGCAAAGTCATCGACATGGTTT 58.851 40.909 0.00 0.00 34.60 3.27
99 100 2.783135 AGCAAAGTCATCGACATGGTT 58.217 42.857 0.00 0.00 34.60 3.67
100 101 2.479566 AGCAAAGTCATCGACATGGT 57.520 45.000 0.00 0.00 34.60 3.55
101 102 2.730090 GCAAGCAAAGTCATCGACATGG 60.730 50.000 0.00 0.00 34.60 3.66
102 103 2.512885 GCAAGCAAAGTCATCGACATG 58.487 47.619 0.00 0.00 34.60 3.21
103 104 1.129251 CGCAAGCAAAGTCATCGACAT 59.871 47.619 0.00 0.00 34.60 3.06
104 105 0.512518 CGCAAGCAAAGTCATCGACA 59.487 50.000 0.00 0.00 34.60 4.35
105 106 0.790207 TCGCAAGCAAAGTCATCGAC 59.210 50.000 0.00 0.00 37.18 4.20
106 107 1.070821 CTCGCAAGCAAAGTCATCGA 58.929 50.000 0.00 0.00 37.18 3.59
107 108 0.792640 ACTCGCAAGCAAAGTCATCG 59.207 50.000 0.00 0.00 37.18 3.84
108 109 2.072298 AGACTCGCAAGCAAAGTCATC 58.928 47.619 20.08 2.21 41.49 2.92
109 110 2.072298 GAGACTCGCAAGCAAAGTCAT 58.928 47.619 20.08 9.96 41.49 3.06
110 111 1.202521 TGAGACTCGCAAGCAAAGTCA 60.203 47.619 20.08 5.20 41.49 3.41
111 112 1.502231 TGAGACTCGCAAGCAAAGTC 58.498 50.000 13.65 13.65 39.76 3.01
112 113 1.953559 TTGAGACTCGCAAGCAAAGT 58.046 45.000 0.00 0.00 37.18 2.66
113 114 2.545526 TCTTTGAGACTCGCAAGCAAAG 59.454 45.455 0.00 0.00 43.99 2.77
114 115 2.560504 TCTTTGAGACTCGCAAGCAAA 58.439 42.857 8.68 0.00 37.18 3.68
115 116 2.238942 TCTTTGAGACTCGCAAGCAA 57.761 45.000 8.68 0.00 37.18 3.91
116 117 2.238942 TTCTTTGAGACTCGCAAGCA 57.761 45.000 8.68 0.00 37.18 3.91
117 118 2.545946 ACTTTCTTTGAGACTCGCAAGC 59.454 45.455 8.68 0.00 37.18 4.01
118 119 3.059325 CCACTTTCTTTGAGACTCGCAAG 60.059 47.826 7.58 7.58 0.00 4.01
119 120 2.872245 CCACTTTCTTTGAGACTCGCAA 59.128 45.455 0.00 0.00 0.00 4.85
120 121 2.158957 ACCACTTTCTTTGAGACTCGCA 60.159 45.455 0.00 0.00 0.00 5.10
121 122 2.484889 ACCACTTTCTTTGAGACTCGC 58.515 47.619 0.00 0.00 0.00 5.03
122 123 4.448060 GGTAACCACTTTCTTTGAGACTCG 59.552 45.833 0.00 0.00 0.00 4.18
123 124 5.365619 TGGTAACCACTTTCTTTGAGACTC 58.634 41.667 0.00 0.00 0.00 3.36
124 125 5.367945 TGGTAACCACTTTCTTTGAGACT 57.632 39.130 0.00 0.00 0.00 3.24
125 126 6.317893 TCTTTGGTAACCACTTTCTTTGAGAC 59.682 38.462 0.00 0.00 30.78 3.36
126 127 6.419791 TCTTTGGTAACCACTTTCTTTGAGA 58.580 36.000 0.00 0.00 30.78 3.27
127 128 6.693315 TCTTTGGTAACCACTTTCTTTGAG 57.307 37.500 0.00 0.00 30.78 3.02
128 129 6.887545 TCTTCTTTGGTAACCACTTTCTTTGA 59.112 34.615 0.00 0.00 30.78 2.69
129 130 6.972901 GTCTTCTTTGGTAACCACTTTCTTTG 59.027 38.462 0.00 0.00 30.78 2.77
130 131 6.183360 CGTCTTCTTTGGTAACCACTTTCTTT 60.183 38.462 0.00 0.00 30.78 2.52
131 132 5.296035 CGTCTTCTTTGGTAACCACTTTCTT 59.704 40.000 0.00 0.00 30.78 2.52
132 133 4.814771 CGTCTTCTTTGGTAACCACTTTCT 59.185 41.667 0.00 0.00 30.78 2.52
133 134 4.812626 TCGTCTTCTTTGGTAACCACTTTC 59.187 41.667 0.00 0.00 30.78 2.62
134 135 4.773013 TCGTCTTCTTTGGTAACCACTTT 58.227 39.130 0.00 0.00 30.78 2.66
135 136 4.411256 TCGTCTTCTTTGGTAACCACTT 57.589 40.909 0.00 0.00 30.78 3.16
136 137 4.202326 ACATCGTCTTCTTTGGTAACCACT 60.202 41.667 0.00 0.00 30.78 4.00
137 138 4.062991 ACATCGTCTTCTTTGGTAACCAC 58.937 43.478 0.00 0.00 30.78 4.16
138 139 4.345859 ACATCGTCTTCTTTGGTAACCA 57.654 40.909 0.00 0.00 0.00 3.67
139 140 4.612939 GCAACATCGTCTTCTTTGGTAACC 60.613 45.833 0.00 0.00 0.00 2.85
140 141 4.464112 GCAACATCGTCTTCTTTGGTAAC 58.536 43.478 0.00 0.00 0.00 2.50
141 142 3.500680 GGCAACATCGTCTTCTTTGGTAA 59.499 43.478 0.00 0.00 0.00 2.85
142 143 3.071479 GGCAACATCGTCTTCTTTGGTA 58.929 45.455 0.00 0.00 0.00 3.25
143 144 1.880027 GGCAACATCGTCTTCTTTGGT 59.120 47.619 0.00 0.00 0.00 3.67
144 145 1.135972 CGGCAACATCGTCTTCTTTGG 60.136 52.381 0.00 0.00 0.00 3.28
145 146 1.531149 ACGGCAACATCGTCTTCTTTG 59.469 47.619 0.00 0.00 35.87 2.77
146 147 1.878953 ACGGCAACATCGTCTTCTTT 58.121 45.000 0.00 0.00 35.87 2.52
147 148 3.606886 ACGGCAACATCGTCTTCTT 57.393 47.368 0.00 0.00 35.87 2.52
164 165 0.447801 GTTCCATGTGCATCGGTGAC 59.552 55.000 0.00 0.00 0.00 3.67
165 166 0.036022 TGTTCCATGTGCATCGGTGA 59.964 50.000 0.00 0.00 0.00 4.02
166 167 0.880441 TTGTTCCATGTGCATCGGTG 59.120 50.000 0.00 0.00 0.00 4.94
167 168 0.881118 GTTGTTCCATGTGCATCGGT 59.119 50.000 0.00 0.00 0.00 4.69
168 169 0.179192 CGTTGTTCCATGTGCATCGG 60.179 55.000 0.00 0.00 0.00 4.18
169 170 0.516877 ACGTTGTTCCATGTGCATCG 59.483 50.000 0.00 1.68 0.00 3.84
170 171 1.464023 CGACGTTGTTCCATGTGCATC 60.464 52.381 0.00 0.00 0.00 3.91
171 172 0.516877 CGACGTTGTTCCATGTGCAT 59.483 50.000 0.00 0.00 0.00 3.96
172 173 0.530870 TCGACGTTGTTCCATGTGCA 60.531 50.000 1.96 0.00 0.00 4.57
173 174 0.110823 GTCGACGTTGTTCCATGTGC 60.111 55.000 0.00 0.00 0.00 4.57
174 175 1.192312 CTGTCGACGTTGTTCCATGTG 59.808 52.381 11.62 0.00 0.00 3.21
175 176 1.067974 TCTGTCGACGTTGTTCCATGT 59.932 47.619 11.62 0.00 0.00 3.21
176 177 1.455786 GTCTGTCGACGTTGTTCCATG 59.544 52.381 11.62 0.00 0.00 3.66
177 178 1.779569 GTCTGTCGACGTTGTTCCAT 58.220 50.000 11.62 0.00 0.00 3.41
178 179 3.261441 GTCTGTCGACGTTGTTCCA 57.739 52.632 11.62 0.00 0.00 3.53
187 188 2.768833 TATATGTGCCGTCTGTCGAC 57.231 50.000 9.11 9.11 42.86 4.20
188 189 2.223641 GGTTATATGTGCCGTCTGTCGA 60.224 50.000 0.00 0.00 42.86 4.20
189 190 2.124903 GGTTATATGTGCCGTCTGTCG 58.875 52.381 0.00 0.00 39.52 4.35
190 191 3.173668 TGGTTATATGTGCCGTCTGTC 57.826 47.619 0.00 0.00 0.00 3.51
191 192 3.620427 TTGGTTATATGTGCCGTCTGT 57.380 42.857 0.00 0.00 0.00 3.41
192 193 4.212004 CAGATTGGTTATATGTGCCGTCTG 59.788 45.833 0.00 0.00 34.10 3.51
193 194 4.141711 ACAGATTGGTTATATGTGCCGTCT 60.142 41.667 0.00 0.00 37.31 4.18
194 195 4.127171 ACAGATTGGTTATATGTGCCGTC 58.873 43.478 0.00 0.00 37.31 4.79
195 196 4.150897 ACAGATTGGTTATATGTGCCGT 57.849 40.909 0.00 0.00 37.31 5.68
196 197 4.789481 GCAACAGATTGGTTATATGTGCCG 60.789 45.833 0.00 0.00 37.70 5.69
197 198 4.499696 GGCAACAGATTGGTTATATGTGCC 60.500 45.833 0.00 0.00 41.18 5.01
198 199 4.499696 GGGCAACAGATTGGTTATATGTGC 60.500 45.833 0.00 0.00 37.70 4.57
199 200 4.644234 TGGGCAACAGATTGGTTATATGTG 59.356 41.667 0.00 0.00 37.70 3.21
200 201 4.865905 TGGGCAACAGATTGGTTATATGT 58.134 39.130 0.00 0.00 40.31 2.29
201 202 5.535783 TCATGGGCAACAGATTGGTTATATG 59.464 40.000 0.00 0.00 36.23 1.78
202 203 5.704354 TCATGGGCAACAGATTGGTTATAT 58.296 37.500 0.00 0.00 36.23 0.86
203 204 5.122707 TCATGGGCAACAGATTGGTTATA 57.877 39.130 0.00 0.00 36.23 0.98
204 205 3.979911 TCATGGGCAACAGATTGGTTAT 58.020 40.909 0.00 0.00 36.23 1.89
205 206 3.448093 TCATGGGCAACAGATTGGTTA 57.552 42.857 0.00 0.00 36.23 2.85
206 207 2.307496 TCATGGGCAACAGATTGGTT 57.693 45.000 0.00 0.00 36.23 3.67
207 208 2.173519 CTTCATGGGCAACAGATTGGT 58.826 47.619 0.00 0.00 36.23 3.67
208 209 2.449464 TCTTCATGGGCAACAGATTGG 58.551 47.619 0.00 0.00 36.23 3.16
209 210 3.256383 TGTTCTTCATGGGCAACAGATTG 59.744 43.478 0.00 0.00 38.99 2.67
210 211 3.499338 TGTTCTTCATGGGCAACAGATT 58.501 40.909 0.00 0.00 39.74 2.40
211 212 3.087031 CTGTTCTTCATGGGCAACAGAT 58.913 45.455 19.03 0.00 45.79 2.90
212 213 2.507484 CTGTTCTTCATGGGCAACAGA 58.493 47.619 19.03 0.57 45.79 3.41
213 214 1.068055 GCTGTTCTTCATGGGCAACAG 60.068 52.381 19.28 19.28 45.72 3.16
214 215 0.961019 GCTGTTCTTCATGGGCAACA 59.039 50.000 0.00 0.00 39.74 3.33
215 216 0.109597 CGCTGTTCTTCATGGGCAAC 60.110 55.000 0.00 0.00 0.00 4.17
216 217 1.243342 CCGCTGTTCTTCATGGGCAA 61.243 55.000 0.00 0.00 0.00 4.52
217 218 1.675310 CCGCTGTTCTTCATGGGCA 60.675 57.895 0.00 0.00 0.00 5.36
218 219 2.409870 CCCGCTGTTCTTCATGGGC 61.410 63.158 0.00 0.00 35.71 5.36
219 220 1.750399 CCCCGCTGTTCTTCATGGG 60.750 63.158 0.00 0.00 39.73 4.00
220 221 1.002134 ACCCCGCTGTTCTTCATGG 60.002 57.895 0.00 0.00 0.00 3.66
221 222 0.321564 TGACCCCGCTGTTCTTCATG 60.322 55.000 0.00 0.00 0.00 3.07
222 223 0.400213 TTGACCCCGCTGTTCTTCAT 59.600 50.000 0.00 0.00 0.00 2.57
223 224 0.181587 TTTGACCCCGCTGTTCTTCA 59.818 50.000 0.00 0.00 0.00 3.02
224 225 1.314730 TTTTGACCCCGCTGTTCTTC 58.685 50.000 0.00 0.00 0.00 2.87
225 226 1.770294 TTTTTGACCCCGCTGTTCTT 58.230 45.000 0.00 0.00 0.00 2.52
226 227 1.995376 ATTTTTGACCCCGCTGTTCT 58.005 45.000 0.00 0.00 0.00 3.01
227 228 2.812358 AATTTTTGACCCCGCTGTTC 57.188 45.000 0.00 0.00 0.00 3.18
228 229 2.030628 CGTAATTTTTGACCCCGCTGTT 60.031 45.455 0.00 0.00 0.00 3.16
229 230 1.538075 CGTAATTTTTGACCCCGCTGT 59.462 47.619 0.00 0.00 0.00 4.40
230 231 1.135517 CCGTAATTTTTGACCCCGCTG 60.136 52.381 0.00 0.00 0.00 5.18
231 232 1.170442 CCGTAATTTTTGACCCCGCT 58.830 50.000 0.00 0.00 0.00 5.52
232 233 0.171679 CCCGTAATTTTTGACCCCGC 59.828 55.000 0.00 0.00 0.00 6.13
233 234 0.171679 GCCCGTAATTTTTGACCCCG 59.828 55.000 0.00 0.00 0.00 5.73
234 235 1.475280 GAGCCCGTAATTTTTGACCCC 59.525 52.381 0.00 0.00 0.00 4.95
235 236 1.475280 GGAGCCCGTAATTTTTGACCC 59.525 52.381 0.00 0.00 0.00 4.46
236 237 2.422479 GAGGAGCCCGTAATTTTTGACC 59.578 50.000 0.00 0.00 0.00 4.02
237 238 3.078837 TGAGGAGCCCGTAATTTTTGAC 58.921 45.455 0.00 0.00 0.00 3.18
238 239 3.426787 TGAGGAGCCCGTAATTTTTGA 57.573 42.857 0.00 0.00 0.00 2.69
239 240 3.254657 TGTTGAGGAGCCCGTAATTTTTG 59.745 43.478 0.00 0.00 0.00 2.44
240 241 3.492337 TGTTGAGGAGCCCGTAATTTTT 58.508 40.909 0.00 0.00 0.00 1.94
241 242 3.149005 TGTTGAGGAGCCCGTAATTTT 57.851 42.857 0.00 0.00 0.00 1.82
242 243 2.817844 GTTGTTGAGGAGCCCGTAATTT 59.182 45.455 0.00 0.00 0.00 1.82
243 244 2.433436 GTTGTTGAGGAGCCCGTAATT 58.567 47.619 0.00 0.00 0.00 1.40
244 245 1.674817 CGTTGTTGAGGAGCCCGTAAT 60.675 52.381 0.00 0.00 0.00 1.89
245 246 0.320073 CGTTGTTGAGGAGCCCGTAA 60.320 55.000 0.00 0.00 0.00 3.18
246 247 1.290955 CGTTGTTGAGGAGCCCGTA 59.709 57.895 0.00 0.00 0.00 4.02
247 248 2.030562 CGTTGTTGAGGAGCCCGT 59.969 61.111 0.00 0.00 0.00 5.28
248 249 1.597027 AACGTTGTTGAGGAGCCCG 60.597 57.895 0.00 0.00 0.00 6.13
249 250 1.949257 CAACGTTGTTGAGGAGCCC 59.051 57.895 20.21 0.00 0.00 5.19
250 251 1.282875 GCAACGTTGTTGAGGAGCC 59.717 57.895 27.78 5.63 0.00 4.70
251 252 0.317020 GTGCAACGTTGTTGAGGAGC 60.317 55.000 27.78 12.56 0.00 4.70
252 253 1.013596 TGTGCAACGTTGTTGAGGAG 58.986 50.000 27.78 1.82 42.39 3.69
253 254 1.454201 TTGTGCAACGTTGTTGAGGA 58.546 45.000 27.78 8.36 42.39 3.71
254 255 2.184448 CTTTGTGCAACGTTGTTGAGG 58.816 47.619 27.78 11.46 42.39 3.86
255 256 1.583404 GCTTTGTGCAACGTTGTTGAG 59.417 47.619 27.78 18.54 42.39 3.02
256 257 1.623359 GCTTTGTGCAACGTTGTTGA 58.377 45.000 27.78 10.96 42.39 3.18
257 258 0.294304 CGCTTTGTGCAACGTTGTTG 59.706 50.000 27.78 13.20 42.39 3.33
258 259 0.109504 ACGCTTTGTGCAACGTTGTT 60.110 45.000 27.78 0.00 42.39 2.83
259 260 0.522495 GACGCTTTGTGCAACGTTGT 60.522 50.000 27.78 6.06 42.39 3.32
260 261 0.522286 TGACGCTTTGTGCAACGTTG 60.522 50.000 23.90 23.90 42.39 4.10
261 262 0.522495 GTGACGCTTTGTGCAACGTT 60.522 50.000 0.00 0.00 42.39 3.99
262 263 1.061887 GTGACGCTTTGTGCAACGT 59.938 52.632 0.00 0.00 42.39 3.99
263 264 1.654137 GGTGACGCTTTGTGCAACG 60.654 57.895 0.00 0.00 42.39 4.10
264 265 4.302154 GGTGACGCTTTGTGCAAC 57.698 55.556 0.00 0.00 43.06 4.17
276 277 4.319622 CGACTATAATCCTGTCTCGGTGAC 60.320 50.000 3.34 3.34 45.54 3.67
277 278 3.813724 CGACTATAATCCTGTCTCGGTGA 59.186 47.826 0.00 0.00 0.00 4.02
278 279 3.058155 CCGACTATAATCCTGTCTCGGTG 60.058 52.174 0.00 0.00 34.05 4.94
279 280 3.147629 CCGACTATAATCCTGTCTCGGT 58.852 50.000 0.00 0.00 34.05 4.69
280 281 3.409570 TCCGACTATAATCCTGTCTCGG 58.590 50.000 0.00 0.00 39.30 4.63
281 282 3.437395 CCTCCGACTATAATCCTGTCTCG 59.563 52.174 0.00 0.00 0.00 4.04
282 283 4.456566 GTCCTCCGACTATAATCCTGTCTC 59.543 50.000 0.00 0.00 35.99 3.36
283 284 4.400120 GTCCTCCGACTATAATCCTGTCT 58.600 47.826 0.00 0.00 35.99 3.41
284 285 4.769859 GTCCTCCGACTATAATCCTGTC 57.230 50.000 0.00 0.00 35.99 3.51
296 297 3.374367 GGAAATTAAGCAAGTCCTCCGAC 59.626 47.826 0.00 0.00 39.50 4.79
297 298 3.263425 AGGAAATTAAGCAAGTCCTCCGA 59.737 43.478 0.00 0.00 0.00 4.55
298 299 3.375299 CAGGAAATTAAGCAAGTCCTCCG 59.625 47.826 0.00 0.00 0.00 4.63
299 300 4.336280 ACAGGAAATTAAGCAAGTCCTCC 58.664 43.478 0.00 0.00 0.00 4.30
300 301 5.003804 TGACAGGAAATTAAGCAAGTCCTC 58.996 41.667 0.00 0.00 0.00 3.71
301 302 4.985538 TGACAGGAAATTAAGCAAGTCCT 58.014 39.130 0.00 0.00 0.00 3.85
302 303 5.705609 TTGACAGGAAATTAAGCAAGTCC 57.294 39.130 0.00 0.00 0.00 3.85
303 304 6.739112 AGTTTGACAGGAAATTAAGCAAGTC 58.261 36.000 0.00 0.00 0.00 3.01
304 305 6.321181 TGAGTTTGACAGGAAATTAAGCAAGT 59.679 34.615 0.00 0.00 0.00 3.16
305 306 6.738114 TGAGTTTGACAGGAAATTAAGCAAG 58.262 36.000 0.00 0.00 0.00 4.01
306 307 6.707440 TGAGTTTGACAGGAAATTAAGCAA 57.293 33.333 0.00 0.00 0.00 3.91
307 308 5.278463 GCTGAGTTTGACAGGAAATTAAGCA 60.278 40.000 0.00 0.00 36.09 3.91
308 309 5.157067 GCTGAGTTTGACAGGAAATTAAGC 58.843 41.667 0.00 0.00 36.09 3.09
309 310 6.317789 TGCTGAGTTTGACAGGAAATTAAG 57.682 37.500 0.00 0.00 36.09 1.85
310 311 6.899393 ATGCTGAGTTTGACAGGAAATTAA 57.101 33.333 0.00 0.00 38.96 1.40
311 312 6.680810 CAATGCTGAGTTTGACAGGAAATTA 58.319 36.000 0.00 0.00 38.96 1.40
312 313 5.535333 CAATGCTGAGTTTGACAGGAAATT 58.465 37.500 0.00 0.00 38.96 1.82
313 314 4.560108 GCAATGCTGAGTTTGACAGGAAAT 60.560 41.667 0.00 0.00 38.96 2.17
314 315 3.243501 GCAATGCTGAGTTTGACAGGAAA 60.244 43.478 0.00 0.00 38.96 3.13
315 316 2.294233 GCAATGCTGAGTTTGACAGGAA 59.706 45.455 0.00 0.00 38.96 3.36
316 317 1.881973 GCAATGCTGAGTTTGACAGGA 59.118 47.619 0.00 0.00 39.71 3.86
317 318 1.068055 GGCAATGCTGAGTTTGACAGG 60.068 52.381 4.82 0.00 36.09 4.00
318 319 1.884579 AGGCAATGCTGAGTTTGACAG 59.115 47.619 4.82 0.00 33.09 3.51
319 320 1.610038 CAGGCAATGCTGAGTTTGACA 59.390 47.619 4.82 0.00 33.09 3.58
320 321 1.881973 TCAGGCAATGCTGAGTTTGAC 59.118 47.619 4.82 0.00 0.00 3.18
321 322 2.275134 TCAGGCAATGCTGAGTTTGA 57.725 45.000 4.82 0.00 0.00 2.69
322 323 3.486375 CGTATCAGGCAATGCTGAGTTTG 60.486 47.826 4.82 0.00 32.74 2.93
323 324 2.679837 CGTATCAGGCAATGCTGAGTTT 59.320 45.455 4.82 0.00 32.74 2.66
324 325 2.283298 CGTATCAGGCAATGCTGAGTT 58.717 47.619 4.82 0.00 32.74 3.01
325 326 1.208052 ACGTATCAGGCAATGCTGAGT 59.792 47.619 4.82 0.00 32.74 3.41
326 327 1.945387 ACGTATCAGGCAATGCTGAG 58.055 50.000 4.82 0.00 32.74 3.35
327 328 2.430694 ACTACGTATCAGGCAATGCTGA 59.569 45.455 4.82 7.48 0.00 4.26
415 419 1.421646 AGTACTATGCAATGGCCTCCC 59.578 52.381 3.32 0.00 40.13 4.30
423 427 3.369385 GCACGTACGAGTACTATGCAAT 58.631 45.455 24.41 0.00 41.48 3.56
424 428 2.788750 CGCACGTACGAGTACTATGCAA 60.789 50.000 24.41 0.00 41.71 4.08
428 432 2.029728 GTGACGCACGTACGAGTACTAT 59.970 50.000 24.41 0.00 36.70 2.12
429 433 1.390123 GTGACGCACGTACGAGTACTA 59.610 52.381 24.41 0.94 36.70 1.82
430 434 0.164647 GTGACGCACGTACGAGTACT 59.835 55.000 24.41 0.00 36.70 2.73
431 435 0.164647 AGTGACGCACGTACGAGTAC 59.835 55.000 24.41 10.19 39.64 2.73
432 436 0.439985 GAGTGACGCACGTACGAGTA 59.560 55.000 24.41 0.00 39.64 2.59
433 437 1.206072 GAGTGACGCACGTACGAGT 59.794 57.895 24.41 17.90 39.64 4.18
434 438 1.058590 GTGAGTGACGCACGTACGAG 61.059 60.000 24.41 16.14 39.64 4.18
436 440 0.659417 AAGTGAGTGACGCACGTACG 60.659 55.000 15.01 15.01 39.08 3.67
448 452 5.416083 TGCATGTACGCTTTATAAGTGAGT 58.584 37.500 6.96 3.46 41.49 3.41
449 453 5.966636 TGCATGTACGCTTTATAAGTGAG 57.033 39.130 6.96 0.00 41.49 3.51
450 454 6.918892 AATGCATGTACGCTTTATAAGTGA 57.081 33.333 0.00 0.00 41.49 3.41
451 455 8.119845 TGTAAATGCATGTACGCTTTATAAGTG 58.880 33.333 19.79 0.00 44.44 3.16
460 464 3.338818 GCATGTAAATGCATGTACGCT 57.661 42.857 19.79 8.88 45.75 5.07
544 549 1.733912 GCGCAGATGTGTCAATTCAGA 59.266 47.619 0.30 0.00 0.00 3.27
552 557 0.521867 TACGTACGCGCAGATGTGTC 60.522 55.000 16.72 0.00 42.83 3.67
557 562 0.305922 GTAGGTACGTACGCGCAGAT 59.694 55.000 16.72 0.00 42.83 2.90
586 870 2.613026 ATCACTGTTTCGTGGTCACA 57.387 45.000 1.90 0.00 35.63 3.58
652 1909 2.202518 GCATTGCACGCAGCGATT 60.203 55.556 24.65 0.00 45.26 3.34
659 1916 1.864750 CGCTAGTTGCATTGCACGC 60.865 57.895 11.66 10.55 43.06 5.34
684 1941 3.074412 GTTCACGACCAGACCATGATTT 58.926 45.455 0.00 0.00 0.00 2.17
789 2083 2.075489 CACGCTCGATCGATACGGC 61.075 63.158 31.29 24.14 0.00 5.68
804 2098 4.504461 GTGTGATGAGCTAGTATTTCCACG 59.496 45.833 0.00 0.00 0.00 4.94
906 2207 4.124238 CGAGCGAATGGGGTTTTTATAGA 58.876 43.478 0.00 0.00 0.00 1.98
1066 2374 3.385384 CACGCAGAGGAGGAGGCA 61.385 66.667 0.00 0.00 0.00 4.75
1126 2434 1.340795 GGAGACAGGGACGAGGTAGAA 60.341 57.143 0.00 0.00 0.00 2.10
1149 2457 4.845580 CGGCCGAGGAGCAGCATT 62.846 66.667 24.07 0.00 0.00 3.56
1446 2754 1.906824 AAAGAGGTCGTCGAGGGCA 60.907 57.895 12.28 0.00 0.00 5.36
1578 2886 1.149148 GGTTGAAGAGCTTGACGTCC 58.851 55.000 14.12 0.00 0.00 4.79
1588 2896 2.082231 CATGCCTGACAGGTTGAAGAG 58.918 52.381 22.58 3.06 37.80 2.85
2145 3512 2.229039 CCGCAGTATCATCGGCTTG 58.771 57.895 0.00 0.00 36.53 4.01
2457 3827 2.533974 CTTGGGTCTCCTGCTCCTGC 62.534 65.000 0.00 0.00 40.20 4.85
2458 3828 1.601171 CTTGGGTCTCCTGCTCCTG 59.399 63.158 0.00 0.00 0.00 3.86
2459 3829 2.297129 GCTTGGGTCTCCTGCTCCT 61.297 63.158 0.00 0.00 33.09 3.69
2460 3830 1.919600 ATGCTTGGGTCTCCTGCTCC 61.920 60.000 0.00 0.00 35.44 4.70
2461 3831 0.747283 CATGCTTGGGTCTCCTGCTC 60.747 60.000 0.00 0.00 35.44 4.26
2462 3832 1.203441 TCATGCTTGGGTCTCCTGCT 61.203 55.000 0.00 0.00 35.44 4.24
2575 3945 2.793278 ACGGTGGAAGCAAAAACATC 57.207 45.000 0.00 0.00 0.00 3.06
2593 3964 4.142038 ACATGAACTTGGTTGGGAGTAAC 58.858 43.478 0.00 0.00 0.00 2.50
2655 4029 7.769220 TCGATCGATAATAGGAAATAGGGTTC 58.231 38.462 15.15 0.00 0.00 3.62
2697 4119 0.950555 TGGCATTGACTCGTGCAGAC 60.951 55.000 8.10 0.00 43.00 3.51
2739 4161 1.399714 TGGGTGCTCCACGTATCTAG 58.600 55.000 7.20 0.00 41.46 2.43
2763 4185 0.404040 GTCAGGTCATTTCCCCCACA 59.596 55.000 0.00 0.00 0.00 4.17
2827 4255 4.523173 TCATTTACTAGGAGTAGATGCCGG 59.477 45.833 0.00 0.00 40.86 6.13
2833 4261 4.142790 CCGCCTCATTTACTAGGAGTAGA 58.857 47.826 0.00 0.00 34.58 2.59
2835 4263 3.907221 ACCGCCTCATTTACTAGGAGTA 58.093 45.455 0.00 0.00 34.58 2.59
2836 4264 2.748388 ACCGCCTCATTTACTAGGAGT 58.252 47.619 0.00 0.00 34.58 3.85
2837 4265 3.005578 GGTACCGCCTCATTTACTAGGAG 59.994 52.174 0.00 0.00 34.58 3.69
2838 4266 2.961062 GGTACCGCCTCATTTACTAGGA 59.039 50.000 0.00 0.00 34.58 2.94
2839 4267 2.696707 TGGTACCGCCTCATTTACTAGG 59.303 50.000 7.57 0.00 38.35 3.02
2840 4268 4.202223 ACATGGTACCGCCTCATTTACTAG 60.202 45.833 7.57 0.00 38.35 2.57
2841 4269 3.707611 ACATGGTACCGCCTCATTTACTA 59.292 43.478 7.57 0.00 38.35 1.82
2861 4289 5.779771 TGGATATGCACTCTATGTATGGACA 59.220 40.000 0.00 0.00 40.72 4.02
2871 4299 5.393866 TGGTATCACTGGATATGCACTCTA 58.606 41.667 0.00 0.00 38.24 2.43
2872 4300 4.226384 TGGTATCACTGGATATGCACTCT 58.774 43.478 0.00 0.00 38.24 3.24
2911 4339 4.162320 ACGGACCACATCTTCTTGTATCAT 59.838 41.667 0.00 0.00 0.00 2.45
3160 4589 3.510360 TCTCCCGAAAGCTACATATAGGC 59.490 47.826 0.00 0.00 0.00 3.93
3409 4845 2.230992 TGTGCAGGCGAAAATGCTTATT 59.769 40.909 0.00 0.00 42.98 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.