Multiple sequence alignment - TraesCS5B01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G308800 chr5B 100.000 3565 0 0 899 4463 491568009 491571573 0.000000e+00 6584.0
1 TraesCS5B01G308800 chr5B 100.000 442 0 0 1 442 491567111 491567552 0.000000e+00 817.0
2 TraesCS5B01G308800 chr5D 95.395 3540 136 12 940 4463 409876169 409879697 0.000000e+00 5609.0
3 TraesCS5B01G308800 chr5D 88.596 456 35 4 2 442 409874797 409875250 5.080000e-149 538.0
4 TraesCS5B01G308800 chr5D 94.595 37 2 0 899 935 409876177 409876213 1.730000e-04 58.4
5 TraesCS5B01G308800 chr5A 93.056 3010 136 19 899 3884 521004382 521007342 0.000000e+00 4333.0
6 TraesCS5B01G308800 chr5A 91.373 568 27 6 3882 4447 521007465 521008012 0.000000e+00 758.0
7 TraesCS5B01G308800 chr5A 92.081 442 33 2 2 442 521003031 521003471 4.900000e-174 621.0
8 TraesCS5B01G308800 chr5A 88.535 157 12 4 4308 4463 521008061 521008212 7.620000e-43 185.0
9 TraesCS5B01G308800 chr1D 88.797 1089 92 13 932 2013 118475754 118476819 0.000000e+00 1308.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G308800 chr5B 491567111 491571573 4462 False 3700.500000 6584 100.00000 1 4463 2 chr5B.!!$F1 4462
1 TraesCS5B01G308800 chr5D 409874797 409879697 4900 False 2068.466667 5609 92.86200 2 4463 3 chr5D.!!$F1 4461
2 TraesCS5B01G308800 chr5A 521003031 521008212 5181 False 1474.250000 4333 91.26125 2 4463 4 chr5A.!!$F1 4461
3 TraesCS5B01G308800 chr1D 118475754 118476819 1065 False 1308.000000 1308 88.79700 932 2013 1 chr1D.!!$F1 1081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 390 0.309922 GTCTCGGTGTTCACTCGACA 59.690 55.000 10.60 1.96 0.00 4.35 F
379 398 0.455295 GTTCACTCGACAGCTCCTCG 60.455 60.000 4.24 4.24 0.00 4.63 F
416 435 1.073025 TGTCATCCTGCGTTTGGCT 59.927 52.632 0.00 0.00 44.05 4.75 F
417 436 1.236616 TGTCATCCTGCGTTTGGCTG 61.237 55.000 0.00 0.00 44.05 4.85 F
2292 3168 1.135721 GCTTTCTGGCCCAGCTTTATG 59.864 52.381 5.66 0.00 0.00 1.90 F
2437 3313 0.603707 TCTTTGGAGGAGCAAGCACG 60.604 55.000 0.00 0.00 0.00 5.34 F
2858 3737 1.495951 CCGCGTTGTCAAACTAGCC 59.504 57.895 4.92 0.00 33.87 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 2408 0.454620 CTCATATACGCGCCGAGGAC 60.455 60.000 5.73 0.0 0.00 3.85 R
1566 2422 1.399714 CCAGGCCAGTCGTACTCATA 58.600 55.000 5.01 0.0 0.00 2.15 R
1962 2833 1.406069 GGATCGGTCAGCACAATCTGT 60.406 52.381 0.00 0.0 35.63 3.41 R
2396 3272 2.117051 TGCAGCCTGATTCTCATCTCT 58.883 47.619 0.00 0.0 0.00 3.10 R
3411 4291 0.035630 GGAGCTGTGATGTCTGCCTT 60.036 55.000 0.00 0.0 33.76 4.35 R
3418 4298 0.322277 CCTTGCTGGAGCTGTGATGT 60.322 55.000 0.00 0.0 42.66 3.06 R
3920 4935 0.459899 TATCACCAAGCTGCGACGAT 59.540 50.000 0.00 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.689034 CCTGACCAGACCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
50 51 2.286425 CCTCCCCTCACCATGGGT 60.286 66.667 18.09 0.00 43.09 4.51
98 99 2.452064 CCCATAGTCGGGCCCACAT 61.452 63.158 24.92 8.90 40.07 3.21
100 101 1.227943 CATAGTCGGGCCCACATGG 60.228 63.158 24.92 4.63 37.09 3.66
109 110 1.259840 GGCCCACATGGACAAGCAAT 61.260 55.000 0.00 0.00 44.36 3.56
114 115 3.025978 CCACATGGACAAGCAATACCAT 58.974 45.455 0.00 0.00 42.83 3.55
161 162 2.472695 TCTACACAACCATGAGCCAC 57.527 50.000 0.00 0.00 0.00 5.01
198 214 1.545706 GGCAAGGACGGAAGGAGTCT 61.546 60.000 0.00 0.00 38.58 3.24
209 227 3.181485 CGGAAGGAGTCTAACTAGGCAAG 60.181 52.174 0.00 0.00 0.00 4.01
210 228 4.024670 GGAAGGAGTCTAACTAGGCAAGA 58.975 47.826 0.00 0.00 0.00 3.02
251 270 4.042809 ACAAAATGAGATAGACACCCCACA 59.957 41.667 0.00 0.00 0.00 4.17
252 271 3.914426 AATGAGATAGACACCCCACAC 57.086 47.619 0.00 0.00 0.00 3.82
253 272 2.319025 TGAGATAGACACCCCACACA 57.681 50.000 0.00 0.00 0.00 3.72
335 354 3.318875 CGCTTGACGTTGTGCTCA 58.681 55.556 0.00 0.00 36.87 4.26
351 370 5.809464 TGTGCTCAATGCTAAATGTATTCG 58.191 37.500 0.00 0.00 43.37 3.34
371 390 0.309922 GTCTCGGTGTTCACTCGACA 59.690 55.000 10.60 1.96 0.00 4.35
379 398 0.455295 GTTCACTCGACAGCTCCTCG 60.455 60.000 4.24 4.24 0.00 4.63
382 401 4.544689 CTCGACAGCTCCTCGCCG 62.545 72.222 5.58 0.00 40.39 6.46
385 404 4.521062 GACAGCTCCTCGCCGCAT 62.521 66.667 0.00 0.00 40.39 4.73
412 431 1.671054 CCCGTGTCATCCTGCGTTT 60.671 57.895 0.00 0.00 0.00 3.60
416 435 1.073025 TGTCATCCTGCGTTTGGCT 59.927 52.632 0.00 0.00 44.05 4.75
417 436 1.236616 TGTCATCCTGCGTTTGGCTG 61.237 55.000 0.00 0.00 44.05 4.85
434 453 3.909995 TGGCTGCACCATATTAGTATCCT 59.090 43.478 0.50 0.00 46.36 3.24
988 1840 4.415150 CCACATGGACGCCTGCCT 62.415 66.667 0.00 0.00 37.39 4.75
1010 1862 1.453155 AGACAATCCATGCGTGTTCC 58.547 50.000 4.96 0.00 0.00 3.62
1137 1992 2.739671 GTAGCCGCCCGTTTCGTT 60.740 61.111 0.00 0.00 0.00 3.85
1220 2075 4.240103 TGGCGCAGGATCCCATCG 62.240 66.667 10.83 10.71 0.00 3.84
1229 2084 4.227134 ATCCCATCGCTCGCGCTT 62.227 61.111 5.56 0.00 39.59 4.68
1458 2314 1.803519 GCAGAGCGACGTTCTCCTG 60.804 63.158 11.59 3.28 0.00 3.86
1767 2626 2.514160 AGGGAAGTTCAAGTTTGGACCT 59.486 45.455 5.01 0.00 37.39 3.85
1808 2673 2.281761 CAACTCCAACCTGCCGCT 60.282 61.111 0.00 0.00 0.00 5.52
1899 2770 2.087646 GCTCTCTTCGCCAAGGAATTT 58.912 47.619 0.00 0.00 0.00 1.82
1908 2779 1.532437 GCCAAGGAATTTGCAAACAGC 59.468 47.619 15.41 6.62 45.96 4.40
1929 2800 3.415212 CAAGGAATTCAGTGAGGCAGAA 58.585 45.455 7.93 0.00 0.00 3.02
1950 2821 5.649831 AGAAAAGAAGGTTATCATGGACAGC 59.350 40.000 0.00 0.00 0.00 4.40
2026 2897 2.549754 GGGCGTCCATGATCACAATAAG 59.450 50.000 0.00 0.00 0.00 1.73
2037 2908 7.148035 CCATGATCACAATAAGGTTGTCATTGA 60.148 37.037 0.00 0.00 34.48 2.57
2292 3168 1.135721 GCTTTCTGGCCCAGCTTTATG 59.864 52.381 5.66 0.00 0.00 1.90
2396 3272 4.261994 GCTAGGCTTTCAATTCACAACCAA 60.262 41.667 0.00 0.00 0.00 3.67
2437 3313 0.603707 TCTTTGGAGGAGCAAGCACG 60.604 55.000 0.00 0.00 0.00 5.34
2484 3360 6.866480 TCCTTATTTTCCAGCATCAATGTTC 58.134 36.000 0.00 0.00 0.00 3.18
2494 3370 5.396484 CAGCATCAATGTTCGTTTCTTGAT 58.604 37.500 0.00 0.00 38.52 2.57
2577 3455 1.742761 CCCACTGCTGTATGTTCTGG 58.257 55.000 0.00 0.00 0.00 3.86
2580 3458 2.005451 CACTGCTGTATGTTCTGGCTC 58.995 52.381 0.00 0.00 0.00 4.70
2585 3463 2.005451 CTGTATGTTCTGGCTCTGCAC 58.995 52.381 0.00 0.00 0.00 4.57
2761 3639 6.851330 CGACTGGAGTTTTCAATGTTAAGAAC 59.149 38.462 0.00 0.00 0.00 3.01
2858 3737 1.495951 CCGCGTTGTCAAACTAGCC 59.504 57.895 4.92 0.00 33.87 3.93
2862 3741 2.352388 GCGTTGTCAAACTAGCCCATA 58.648 47.619 0.00 0.00 33.87 2.74
2883 3762 7.049754 CCATATATGCATGCCTGAATAGTGTA 58.950 38.462 16.68 0.00 0.00 2.90
3139 4019 9.502091 TCAGTATTTTGCACTATTACTTCAGTT 57.498 29.630 0.00 0.00 0.00 3.16
3170 4050 6.640518 TGAGTCCTTTTAGTCATGTGGTATC 58.359 40.000 0.00 0.00 0.00 2.24
3266 4146 7.229907 TCAATTAACTTGGGTTTTCACTACTCC 59.770 37.037 0.00 0.00 36.92 3.85
3292 4172 2.071540 CAGCTCTGAACGAAGCATTGA 58.928 47.619 0.00 0.00 0.00 2.57
3327 4207 1.539388 CGCCTAAATCTGGTTGTTGCA 59.461 47.619 0.00 0.00 0.00 4.08
3363 4243 3.521560 TCATATGCCGAACAGTTCAGAC 58.478 45.455 13.82 2.56 0.00 3.51
3410 4290 3.122937 GCTTCACCAGCTACAAATTCG 57.877 47.619 0.00 0.00 46.27 3.34
3411 4291 2.742053 GCTTCACCAGCTACAAATTCGA 59.258 45.455 0.00 0.00 46.27 3.71
3417 4297 2.096496 CCAGCTACAAATTCGAAGGCAG 59.904 50.000 3.35 0.00 0.00 4.85
3418 4298 3.002791 CAGCTACAAATTCGAAGGCAGA 58.997 45.455 3.35 0.00 0.00 4.26
3538 4418 6.719370 AGTTAAAAACACCATATGCTCTGGAA 59.281 34.615 0.00 0.00 37.22 3.53
3632 4518 4.803452 TGTTCAATCCTGGGAAAAACTCT 58.197 39.130 0.00 0.00 0.00 3.24
3725 4615 0.322546 AATTCCTTGTGCCCCGACTC 60.323 55.000 0.00 0.00 0.00 3.36
3776 4666 2.122783 TATTCTTTGGGGCAACTCCG 57.877 50.000 0.00 0.00 34.32 4.63
3836 4726 2.295909 TCTCCATTTTGCGGTTTTGAGG 59.704 45.455 0.00 0.00 0.00 3.86
3845 4735 0.958091 CGGTTTTGAGGGATGCACAA 59.042 50.000 0.00 0.00 0.00 3.33
3857 4747 4.663120 AGGGATGCACAATGGGTATTACTA 59.337 41.667 0.00 0.00 0.00 1.82
3920 4935 0.696143 TGACCTGACTGTTTCCCCCA 60.696 55.000 0.00 0.00 0.00 4.96
3926 4941 0.739813 GACTGTTTCCCCCATCGTCG 60.740 60.000 0.00 0.00 0.00 5.12
3943 4958 2.734175 CGTCGCAGCTTGGTGATAGTAA 60.734 50.000 3.84 0.00 0.00 2.24
3957 4972 7.437748 TGGTGATAGTAATTGTTTTGGGTTTG 58.562 34.615 0.00 0.00 0.00 2.93
4043 5058 4.248058 CCATTTGGAAGTTTGATTCAGGC 58.752 43.478 0.00 0.00 37.39 4.85
4047 5062 3.415212 TGGAAGTTTGATTCAGGCTCTG 58.585 45.455 0.00 0.00 0.00 3.35
4108 5126 7.592938 TGCCAGTAACATTCATCAAAGTAAAG 58.407 34.615 0.00 0.00 0.00 1.85
4372 5390 3.582780 CCTTTTGATCAAAGCTGCCTTC 58.417 45.455 19.64 0.00 40.75 3.46
4420 5624 2.730129 AAAGAGCCGGCCACCCAAAT 62.730 55.000 26.15 0.00 0.00 2.32
4426 5630 0.610785 CCGGCCACCCAAATACTTGT 60.611 55.000 2.24 0.00 0.00 3.16
4449 5653 6.868864 TGTTAACTAATCTCTGCACTTCAGAC 59.131 38.462 7.22 0.00 46.34 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.496817 GTCTGGTCAGGCCGCTAG 59.503 66.667 0.00 0.00 41.21 3.42
4 5 3.075005 GGTCTGGTCAGGCCGCTA 61.075 66.667 5.81 0.00 44.13 4.26
27 28 2.041405 GGTGAGGGGAGGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
50 51 1.949133 GAGTTGCGCTGTGTCGTCA 60.949 57.895 9.73 0.00 0.00 4.35
98 99 3.278574 GCTACATGGTATTGCTTGTCCA 58.721 45.455 0.00 0.00 0.00 4.02
100 101 3.278574 TGGCTACATGGTATTGCTTGTC 58.721 45.455 0.00 0.00 0.00 3.18
161 162 1.712018 CCTCATGGCTCATGCACACG 61.712 60.000 9.54 0.00 41.18 4.49
198 214 5.217978 TCGAGGTTTTTCTTGCCTAGTTA 57.782 39.130 0.00 0.00 31.89 2.24
209 227 2.542595 TGTCTTCGCTTCGAGGTTTTTC 59.457 45.455 0.00 0.00 37.14 2.29
210 228 2.557317 TGTCTTCGCTTCGAGGTTTTT 58.443 42.857 0.00 0.00 37.14 1.94
251 270 3.569701 ACGTGATGAAAATGGAAAGCTGT 59.430 39.130 0.00 0.00 0.00 4.40
252 271 4.164822 ACGTGATGAAAATGGAAAGCTG 57.835 40.909 0.00 0.00 0.00 4.24
253 272 5.415701 ACATACGTGATGAAAATGGAAAGCT 59.584 36.000 0.00 0.00 39.06 3.74
335 354 4.750098 CCGAGACCGAATACATTTAGCATT 59.250 41.667 0.00 0.00 38.22 3.56
351 370 0.386985 GTCGAGTGAACACCGAGACC 60.387 60.000 14.79 4.88 35.71 3.85
379 398 3.799755 GGGTGTCGACAATGCGGC 61.800 66.667 21.95 6.42 36.22 6.53
382 401 1.959226 ACACGGGTGTCGACAATGC 60.959 57.895 21.95 8.06 40.24 3.56
985 1837 1.202580 ACGCATGGATTGTCTAGAGGC 60.203 52.381 0.00 0.00 0.00 4.70
988 1840 3.521560 GAACACGCATGGATTGTCTAGA 58.478 45.455 0.00 0.00 0.00 2.43
1010 1862 2.746359 GCGATGGGATGAGAGGGG 59.254 66.667 0.00 0.00 0.00 4.79
1065 1917 3.468140 GGGAGGCGGTGTAGGGAC 61.468 72.222 0.00 0.00 0.00 4.46
1458 2314 4.475135 GGCTGGGAGGAGAACGCC 62.475 72.222 0.00 0.00 38.49 5.68
1552 2408 0.454620 CTCATATACGCGCCGAGGAC 60.455 60.000 5.73 0.00 0.00 3.85
1566 2422 1.399714 CCAGGCCAGTCGTACTCATA 58.600 55.000 5.01 0.00 0.00 2.15
1808 2673 3.089874 CTGGCCCCGGAGATGGAA 61.090 66.667 0.73 0.00 0.00 3.53
1908 2779 3.063510 TCTGCCTCACTGAATTCCTTG 57.936 47.619 2.27 0.00 0.00 3.61
1929 2800 3.941483 CGCTGTCCATGATAACCTTCTTT 59.059 43.478 0.00 0.00 0.00 2.52
1962 2833 1.406069 GGATCGGTCAGCACAATCTGT 60.406 52.381 0.00 0.00 35.63 3.41
2068 2939 7.468141 AGGATCCTGGAAAATTTTACAAGAC 57.532 36.000 15.29 9.95 28.96 3.01
2292 3168 3.742369 CCAAATCAAAATGCTCACCACAC 59.258 43.478 0.00 0.00 0.00 3.82
2396 3272 2.117051 TGCAGCCTGATTCTCATCTCT 58.883 47.619 0.00 0.00 0.00 3.10
2418 3294 0.603707 CGTGCTTGCTCCTCCAAAGA 60.604 55.000 0.00 0.00 0.00 2.52
2437 3313 2.034685 GCAAACTCACCCTCTTTCAACC 59.965 50.000 0.00 0.00 0.00 3.77
2484 3360 7.692908 ATTTTTACCACAACATCAAGAAACG 57.307 32.000 0.00 0.00 0.00 3.60
2494 3370 8.046294 ACGCATTATCTATTTTTACCACAACA 57.954 30.769 0.00 0.00 0.00 3.33
2724 3602 1.218316 CCAGTCGCCCTAACAGTCC 59.782 63.158 0.00 0.00 0.00 3.85
2832 3711 3.414700 GACAACGCGGCACCAGAG 61.415 66.667 12.47 0.00 0.00 3.35
2858 3737 5.884232 ACACTATTCAGGCATGCATATATGG 59.116 40.000 21.36 12.99 0.00 2.74
2862 3741 5.936372 CAGTACACTATTCAGGCATGCATAT 59.064 40.000 21.36 6.43 0.00 1.78
2883 3762 4.737855 ATTCTACGGTATCAAGTGCAGT 57.262 40.909 0.00 0.00 0.00 4.40
3139 4019 9.599866 CACATGACTAAAAGGACTCAACATATA 57.400 33.333 0.00 0.00 0.00 0.86
3140 4020 7.554118 CCACATGACTAAAAGGACTCAACATAT 59.446 37.037 0.00 0.00 0.00 1.78
3154 4034 5.755409 ACACAGGATACCACATGACTAAA 57.245 39.130 0.00 0.00 37.17 1.85
3170 4050 3.303526 GGTAACAAGCACGTTAACACAGG 60.304 47.826 6.39 0.00 38.64 4.00
3243 4123 5.704053 CGGAGTAGTGAAAACCCAAGTTAAT 59.296 40.000 0.00 0.00 34.19 1.40
3266 4146 0.318699 TTCGTTCAGAGCTGGACACG 60.319 55.000 9.43 9.67 39.03 4.49
3292 4172 1.741770 GGCGTTCGACCTCAGCATT 60.742 57.895 0.00 0.00 0.00 3.56
3402 4282 3.189287 GTGATGTCTGCCTTCGAATTTGT 59.811 43.478 0.00 0.00 0.00 2.83
3410 4290 1.367659 GAGCTGTGATGTCTGCCTTC 58.632 55.000 0.00 0.00 33.76 3.46
3411 4291 0.035630 GGAGCTGTGATGTCTGCCTT 60.036 55.000 0.00 0.00 33.76 4.35
3417 4297 1.085091 CTTGCTGGAGCTGTGATGTC 58.915 55.000 0.00 0.00 42.66 3.06
3418 4298 0.322277 CCTTGCTGGAGCTGTGATGT 60.322 55.000 0.00 0.00 42.66 3.06
3538 4418 4.160252 TCCCGCGACCTAAGTAAAGTATTT 59.840 41.667 8.23 0.00 43.42 1.40
3582 4468 7.672983 ATAATTTCGACACAACAAGAGATGT 57.327 32.000 0.00 0.00 46.82 3.06
3632 4518 8.286800 CACTTTATACAGTTCAAAAATCGACCA 58.713 33.333 0.00 0.00 0.00 4.02
3696 4586 4.142249 GGGCACAAGGAATTGTACCATAAC 60.142 45.833 11.45 0.00 39.56 1.89
3725 4615 6.094048 ACATTTCCATCAAGTTATCGGTTCAG 59.906 38.462 0.00 0.00 0.00 3.02
3776 4666 1.598601 CAAACAACAAAGCATGCCACC 59.401 47.619 15.66 0.00 0.00 4.61
3836 4726 5.621193 ACTAGTAATACCCATTGTGCATCC 58.379 41.667 0.00 0.00 0.00 3.51
3845 4735 9.771140 AGCTAAGCTTATACTAGTAATACCCAT 57.229 33.333 6.64 0.00 33.89 4.00
3857 4747 7.112779 ACAACAAATGGAGCTAAGCTTATACT 58.887 34.615 6.64 7.73 39.88 2.12
3920 4935 0.459899 TATCACCAAGCTGCGACGAT 59.540 50.000 0.00 0.00 0.00 3.73
3926 4941 5.567138 AACAATTACTATCACCAAGCTGC 57.433 39.130 0.00 0.00 0.00 5.25
3943 4958 6.488344 ACAAGAACAAACAAACCCAAAACAAT 59.512 30.769 0.00 0.00 0.00 2.71
3957 4972 5.479716 TCTTCTTCGGAACAAGAACAAAC 57.520 39.130 6.05 0.00 37.45 2.93
4001 5016 0.596083 CGGCAAAAATCGCAACACCA 60.596 50.000 0.00 0.00 0.00 4.17
4002 5017 2.140923 CGGCAAAAATCGCAACACC 58.859 52.632 0.00 0.00 0.00 4.16
4043 5058 7.543868 GCCAGTATAATATCTACAACTGCAGAG 59.456 40.741 23.35 14.90 34.41 3.35
4047 5062 6.929049 TGTGCCAGTATAATATCTACAACTGC 59.071 38.462 0.00 0.00 34.41 4.40
4402 5420 1.858739 TATTTGGGTGGCCGGCTCTT 61.859 55.000 28.56 5.45 0.00 2.85
4403 5421 2.305607 TATTTGGGTGGCCGGCTCT 61.306 57.895 28.56 6.28 0.00 4.09
4409 5613 3.830178 AGTTAACAAGTATTTGGGTGGCC 59.170 43.478 8.61 0.00 38.66 5.36
4414 5618 8.398665 GCAGAGATTAGTTAACAAGTATTTGGG 58.601 37.037 8.61 0.00 38.66 4.12
4415 5619 8.946085 TGCAGAGATTAGTTAACAAGTATTTGG 58.054 33.333 8.61 0.00 38.66 3.28
4420 5624 8.364894 TGAAGTGCAGAGATTAGTTAACAAGTA 58.635 33.333 8.61 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.