Multiple sequence alignment - TraesCS5B01G308600
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5B01G308600
chr5B
100.000
3145
0
0
1
3145
491271567
491274711
0.000000e+00
5808.0
1
TraesCS5B01G308600
chr5B
92.391
644
49
0
1105
1748
491370163
491370806
0.000000e+00
918.0
2
TraesCS5B01G308600
chr5B
92.562
484
30
2
1139
1622
491280038
491280515
0.000000e+00
689.0
3
TraesCS5B01G308600
chr5B
88.272
162
8
5
812
973
491369888
491370038
1.930000e-42
183.0
4
TraesCS5B01G308600
chr5D
89.345
1436
93
31
762
2180
409522908
409524300
0.000000e+00
1749.0
5
TraesCS5B01G308600
chr5D
86.819
1009
108
17
2146
3136
409524304
409525305
0.000000e+00
1103.0
6
TraesCS5B01G308600
chr5D
89.314
758
59
11
988
1724
409575431
409576187
0.000000e+00
931.0
7
TraesCS5B01G308600
chr5D
85.648
648
70
14
1115
1743
409454496
409455139
0.000000e+00
660.0
8
TraesCS5B01G308600
chr5D
88.571
385
33
7
336
716
409522197
409522574
1.030000e-124
457.0
9
TraesCS5B01G308600
chr5D
88.158
76
9
0
1
76
409521873
409521948
1.200000e-14
91.6
10
TraesCS5B01G308600
chr5A
93.146
890
47
7
1000
1875
520697326
520698215
0.000000e+00
1293.0
11
TraesCS5B01G308600
chr5A
86.889
961
82
13
805
1748
520729215
520730148
0.000000e+00
1037.0
12
TraesCS5B01G308600
chr5A
89.883
682
51
9
83
759
520696429
520697097
0.000000e+00
861.0
13
TraesCS5B01G308600
chr5A
89.247
558
41
6
1078
1622
520705832
520706383
0.000000e+00
680.0
14
TraesCS5B01G308600
chr5A
86.349
630
65
15
1132
1743
520680753
520681379
0.000000e+00
667.0
15
TraesCS5B01G308600
chr5A
80.461
824
97
30
1943
2738
520698244
520699031
3.520000e-159
571.0
16
TraesCS5B01G308600
chr5A
85.938
448
32
11
2728
3145
520699241
520699687
1.720000e-122
449.0
17
TraesCS5B01G308600
chr5A
93.396
212
12
2
743
954
520697111
520697320
2.360000e-81
313.0
18
TraesCS5B01G308600
chr6B
100.000
30
0
0
661
690
528291255
528291226
4.380000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5B01G308600
chr5B
491271567
491274711
3144
False
5808.00
5808
100.00000
1
3145
1
chr5B.!!$F1
3144
1
TraesCS5B01G308600
chr5B
491369888
491370806
918
False
550.50
918
90.33150
812
1748
2
chr5B.!!$F3
936
2
TraesCS5B01G308600
chr5D
409575431
409576187
756
False
931.00
931
89.31400
988
1724
1
chr5D.!!$F2
736
3
TraesCS5B01G308600
chr5D
409521873
409525305
3432
False
850.15
1749
88.22325
1
3136
4
chr5D.!!$F3
3135
4
TraesCS5B01G308600
chr5D
409454496
409455139
643
False
660.00
660
85.64800
1115
1743
1
chr5D.!!$F1
628
5
TraesCS5B01G308600
chr5A
520729215
520730148
933
False
1037.00
1037
86.88900
805
1748
1
chr5A.!!$F3
943
6
TraesCS5B01G308600
chr5A
520696429
520699687
3258
False
697.40
1293
88.56480
83
3145
5
chr5A.!!$F4
3062
7
TraesCS5B01G308600
chr5A
520705832
520706383
551
False
680.00
680
89.24700
1078
1622
1
chr5A.!!$F2
544
8
TraesCS5B01G308600
chr5A
520680753
520681379
626
False
667.00
667
86.34900
1132
1743
1
chr5A.!!$F1
611
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
747
932
0.527565
ACGGGTACGACGTATGCTTT
59.472
50.0
11.46
0.0
43.6
3.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2684
3321
0.107017
CTGGTGGGGATTTGCTCGAT
60.107
55.0
0.0
0.0
0.0
3.59
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
53
54
6.995091
GGATGGCTTCTAACATCTTTCATACT
59.005
38.462
0.00
0.00
42.34
2.12
138
221
4.637977
TCCTTTTTGGTGCAAATTTTCCAC
59.362
37.500
9.28
9.28
33.19
4.02
147
230
3.133542
TGCAAATTTTCCACATCACCACA
59.866
39.130
0.00
0.00
0.00
4.17
154
237
2.296792
TCCACATCACCACAGTGTTTG
58.703
47.619
0.00
0.00
44.83
2.93
162
245
5.554822
TCACCACAGTGTTTGTAGTTTTC
57.445
39.130
0.00
0.00
44.83
2.29
170
253
7.330700
CACAGTGTTTGTAGTTTTCCATTTGTT
59.669
33.333
0.00
0.00
38.16
2.83
194
277
9.437045
GTTTTCAAAATTGCACTTTCCTAATTG
57.563
29.630
2.17
0.00
0.00
2.32
281
460
8.716646
ATATATAAAAGTGCCCAAAGTTTTGC
57.283
30.769
0.00
0.84
35.05
3.68
282
461
2.777832
AAAGTGCCCAAAGTTTTGCA
57.222
40.000
5.65
5.65
36.86
4.08
283
462
3.280197
AAAGTGCCCAAAGTTTTGCAT
57.720
38.095
11.57
0.00
36.86
3.96
284
463
3.280197
AAGTGCCCAAAGTTTTGCATT
57.720
38.095
11.57
6.09
36.86
3.56
285
464
3.280197
AGTGCCCAAAGTTTTGCATTT
57.720
38.095
11.57
3.14
36.86
2.32
286
465
4.414337
AGTGCCCAAAGTTTTGCATTTA
57.586
36.364
11.57
0.00
36.86
1.40
287
466
4.971939
AGTGCCCAAAGTTTTGCATTTAT
58.028
34.783
11.57
0.00
36.86
1.40
288
467
5.375773
AGTGCCCAAAGTTTTGCATTTATT
58.624
33.333
11.57
0.00
36.86
1.40
289
468
5.827267
AGTGCCCAAAGTTTTGCATTTATTT
59.173
32.000
11.57
0.00
36.86
1.40
290
469
5.914074
GTGCCCAAAGTTTTGCATTTATTTG
59.086
36.000
11.57
0.00
36.86
2.32
291
470
5.824624
TGCCCAAAGTTTTGCATTTATTTGA
59.175
32.000
13.46
0.00
36.86
2.69
292
471
6.017275
TGCCCAAAGTTTTGCATTTATTTGAG
60.017
34.615
13.46
4.96
36.86
3.02
293
472
6.372981
CCCAAAGTTTTGCATTTATTTGAGC
58.627
36.000
13.46
0.00
36.86
4.26
294
473
6.372981
CCAAAGTTTTGCATTTATTTGAGCC
58.627
36.000
13.46
0.00
36.86
4.70
295
474
6.017275
CCAAAGTTTTGCATTTATTTGAGCCA
60.017
34.615
13.46
0.00
36.86
4.75
296
475
7.308710
CCAAAGTTTTGCATTTATTTGAGCCAT
60.309
33.333
13.46
0.00
36.86
4.40
297
476
8.719648
CAAAGTTTTGCATTTATTTGAGCCATA
58.280
29.630
8.48
0.00
31.01
2.74
298
477
9.452287
AAAGTTTTGCATTTATTTGAGCCATAT
57.548
25.926
0.00
0.00
0.00
1.78
326
505
7.907841
TGGCCTTGTTAGTACTATTCATAGA
57.092
36.000
3.32
0.00
34.50
1.98
327
506
8.492415
TGGCCTTGTTAGTACTATTCATAGAT
57.508
34.615
3.32
0.00
34.50
1.98
328
507
9.596308
TGGCCTTGTTAGTACTATTCATAGATA
57.404
33.333
3.32
0.00
34.50
1.98
375
555
9.736023
GTGCTAGTTTAGAATTTCCCATTATTG
57.264
33.333
0.00
0.00
0.00
1.90
400
580
9.204337
TGACATTGAAATGAATTATTGGGATCT
57.796
29.630
9.94
0.00
39.67
2.75
407
587
5.857471
TGAATTATTGGGATCTGCTTTGG
57.143
39.130
0.00
0.00
0.00
3.28
421
601
2.960384
TGCTTTGGCATATCTTCATGGG
59.040
45.455
0.00
0.00
44.28
4.00
431
611
5.239525
GCATATCTTCATGGGGTTTGTAGTC
59.760
44.000
0.00
0.00
0.00
2.59
437
617
3.392947
TCATGGGGTTTGTAGTCTCACAA
59.607
43.478
0.00
0.00
36.65
3.33
440
620
5.570205
TGGGGTTTGTAGTCTCACAATTA
57.430
39.130
0.00
0.00
38.18
1.40
447
627
9.391006
GGTTTGTAGTCTCACAATTATATGGAA
57.609
33.333
0.00
0.00
38.18
3.53
481
664
9.912634
CCTAATATAAAATGGCTATTTGTGTGG
57.087
33.333
8.97
2.58
36.65
4.17
539
722
8.154649
TCTCAAGCTTTTAAAACTGAACTAGG
57.845
34.615
0.00
0.00
0.00
3.02
545
728
6.262496
GCTTTTAAAACTGAACTAGGTGACCT
59.738
38.462
10.00
10.00
37.71
3.85
546
729
7.443272
GCTTTTAAAACTGAACTAGGTGACCTA
59.557
37.037
11.47
11.47
34.61
3.08
547
730
9.503399
CTTTTAAAACTGAACTAGGTGACCTAT
57.497
33.333
12.49
0.00
35.36
2.57
674
859
3.793797
TCACAGAAAACTGACGTCAGA
57.206
42.857
43.55
21.09
46.59
3.27
720
905
8.992349
TCTATTGATATCTCCCAAGAACAGAAA
58.008
33.333
3.98
0.00
34.49
2.52
729
914
4.887655
TCCCAAGAACAGAAAAGAAAGGAC
59.112
41.667
0.00
0.00
0.00
3.85
747
932
0.527565
ACGGGTACGACGTATGCTTT
59.472
50.000
11.46
0.00
43.60
3.51
773
1246
1.536940
TTTTTAACCGGCAGTAGGGC
58.463
50.000
0.00
0.00
39.06
5.19
900
1373
2.059541
GACGTGAGCTTTCACTACCAC
58.940
52.381
0.00
0.00
38.40
4.16
901
1374
1.270147
ACGTGAGCTTTCACTACCACC
60.270
52.381
4.76
0.00
38.40
4.61
902
1375
1.270094
CGTGAGCTTTCACTACCACCA
60.270
52.381
4.76
0.00
38.40
4.17
903
1376
2.417719
GTGAGCTTTCACTACCACCAG
58.582
52.381
0.00
0.00
37.62
4.00
963
1437
2.032894
CCAACAAACTACACTCGCACAG
60.033
50.000
0.00
0.00
0.00
3.66
982
1456
2.192175
GGCACCCCCGGAATAGTG
59.808
66.667
0.73
5.85
0.00
2.74
983
1457
2.192175
GCACCCCCGGAATAGTGG
59.808
66.667
0.73
0.00
0.00
4.00
984
1458
2.676265
GCACCCCCGGAATAGTGGT
61.676
63.158
0.73
0.00
0.00
4.16
985
1459
1.223487
CACCCCCGGAATAGTGGTG
59.777
63.158
0.73
5.93
40.39
4.17
986
1460
1.999002
ACCCCCGGAATAGTGGTGG
60.999
63.158
0.73
0.00
0.00
4.61
989
1463
2.675242
CCCGGAATAGTGGTGGGCA
61.675
63.158
0.73
0.00
32.09
5.36
1036
1513
0.600557
ACAGAGCAGAGAACGACAGG
59.399
55.000
0.00
0.00
0.00
4.00
1082
1565
7.620880
ACAACAACCATAACTTCATCTAGCTA
58.379
34.615
0.00
0.00
0.00
3.32
1258
1797
1.566018
CCTTTCGAGACCAACGTGGC
61.566
60.000
0.00
0.00
42.67
5.01
1484
2035
4.400109
ATCGACGACGTGTGCGCT
62.400
61.111
4.58
0.00
42.83
5.92
1733
2294
3.266686
TACAGCACAGCCCCGCATT
62.267
57.895
0.00
0.00
0.00
3.56
1748
2309
0.108945
GCATTCCCAAGCTCTTGTGC
60.109
55.000
8.60
7.74
38.85
4.57
1749
2310
0.169672
CATTCCCAAGCTCTTGTGCG
59.830
55.000
8.60
0.00
38.85
5.34
1774
2335
3.352648
GGAAGTTTCCGGGAATGATTGA
58.647
45.455
10.86
0.00
37.65
2.57
1782
2343
1.958579
CGGGAATGATTGATGCCATGT
59.041
47.619
0.00
0.00
29.38
3.21
1838
2404
4.934075
TGATCGAAGAGCTCAATTGTTG
57.066
40.909
17.77
1.26
46.78
3.33
1854
2420
7.531716
TCAATTGTTGGTGTAAATATTCGACC
58.468
34.615
5.13
0.00
0.00
4.79
1875
2441
1.197721
GCGCAAAATGCTGTACTGACT
59.802
47.619
0.30
0.00
42.25
3.41
1877
2443
3.853307
GCGCAAAATGCTGTACTGACTTT
60.853
43.478
0.30
0.00
42.25
2.66
1878
2444
3.665409
CGCAAAATGCTGTACTGACTTTG
59.335
43.478
3.61
9.70
42.25
2.77
1879
2445
3.426525
GCAAAATGCTGTACTGACTTTGC
59.573
43.478
20.17
20.17
40.96
3.68
1880
2446
4.794003
GCAAAATGCTGTACTGACTTTGCT
60.794
41.667
23.71
4.11
42.28
3.91
1882
2448
2.908688
TGCTGTACTGACTTTGCTCA
57.091
45.000
3.61
0.00
0.00
4.26
1883
2449
3.407424
TGCTGTACTGACTTTGCTCAT
57.593
42.857
3.61
0.00
0.00
2.90
1884
2450
3.069289
TGCTGTACTGACTTTGCTCATG
58.931
45.455
3.61
0.00
0.00
3.07
1885
2451
3.070018
GCTGTACTGACTTTGCTCATGT
58.930
45.455
3.61
0.00
0.00
3.21
1886
2452
3.120408
GCTGTACTGACTTTGCTCATGTG
60.120
47.826
3.61
0.00
0.00
3.21
1887
2453
4.060900
CTGTACTGACTTTGCTCATGTGT
58.939
43.478
0.00
0.00
0.00
3.72
1888
2454
5.208463
TGTACTGACTTTGCTCATGTGTA
57.792
39.130
0.00
0.00
0.00
2.90
1891
2457
5.679734
ACTGACTTTGCTCATGTGTAAAG
57.320
39.130
26.53
26.53
42.55
1.85
1896
2462
6.005583
ACTTTGCTCATGTGTAAAGTCATG
57.994
37.500
27.54
12.84
45.10
3.07
1897
2463
4.424061
TTGCTCATGTGTAAAGTCATGC
57.576
40.909
0.00
0.00
40.54
4.06
1901
2467
4.670992
GCTCATGTGTAAAGTCATGCTGTG
60.671
45.833
0.00
0.00
40.54
3.66
1902
2468
3.189080
TCATGTGTAAAGTCATGCTGTGC
59.811
43.478
0.00
0.00
40.54
4.57
1911
2484
2.227388
AGTCATGCTGTGCTTACTTTGC
59.773
45.455
0.00
0.00
0.00
3.68
1914
2487
1.965935
TGCTGTGCTTACTTTGCTCA
58.034
45.000
0.00
0.00
33.71
4.26
1960
2533
2.814336
GACAAGTAGGGTTGCCTTTGAG
59.186
50.000
0.00
0.00
0.00
3.02
1970
2543
0.318441
TGCCTTTGAGTCTCCGTCTG
59.682
55.000
0.00
0.00
0.00
3.51
1971
2544
0.318762
GCCTTTGAGTCTCCGTCTGT
59.681
55.000
0.00
0.00
0.00
3.41
2017
2591
1.611491
CTGCTGCCCTTTTAAACGGAA
59.389
47.619
12.15
0.00
0.00
4.30
2058
2632
1.272769
GTCTAGGACAAAGGTGACGCT
59.727
52.381
0.00
0.00
32.09
5.07
2071
2645
1.269998
GTGACGCTGTCTCACCTTACT
59.730
52.381
9.49
0.00
33.23
2.24
2075
2649
5.875108
TGACGCTGTCTCACCTTACTTAGG
61.875
50.000
9.49
0.00
40.61
2.69
2097
2671
4.686554
GGGAATGTACAACGATGCTATCTC
59.313
45.833
0.00
0.00
0.00
2.75
2108
2682
4.236147
CGATGCTATCTCAGGATTGTCAG
58.764
47.826
0.00
0.00
35.06
3.51
2109
2683
4.022503
CGATGCTATCTCAGGATTGTCAGA
60.023
45.833
0.00
0.00
35.06
3.27
2140
2717
7.511959
AAATCTTAAGGTGAAGGACAGAAAC
57.488
36.000
1.85
0.00
0.00
2.78
2146
2756
5.319043
AGGTGAAGGACAGAAACCATAAA
57.681
39.130
0.00
0.00
33.13
1.40
2288
2908
2.634940
TGCCTCCTCTAGATTATGTGGC
59.365
50.000
13.53
13.53
38.42
5.01
2289
2909
2.634940
GCCTCCTCTAGATTATGTGGCA
59.365
50.000
14.70
0.00
37.91
4.92
2296
2933
6.558775
TCCTCTAGATTATGTGGCAGGTTATT
59.441
38.462
0.00
0.00
0.00
1.40
2309
2946
6.150474
GTGGCAGGTTATTAACTGTTGTACAT
59.850
38.462
2.69
0.00
37.07
2.29
2310
2947
7.334921
GTGGCAGGTTATTAACTGTTGTACATA
59.665
37.037
2.69
0.00
37.07
2.29
2499
3136
8.664798
GCAAATTTAACCAGAACAAACTTCTTT
58.335
29.630
0.00
0.00
0.00
2.52
2524
3161
4.008933
GGTCACCACCGCAGCTCT
62.009
66.667
0.00
0.00
31.06
4.09
2525
3162
2.646175
GGTCACCACCGCAGCTCTA
61.646
63.158
0.00
0.00
31.06
2.43
2534
3171
0.598680
CCGCAGCTCTACACCATAGC
60.599
60.000
0.00
0.00
36.48
2.97
2575
3212
0.107508
AGCCATCCATTCAGACCACG
60.108
55.000
0.00
0.00
0.00
4.94
2582
3219
0.677731
CATTCAGACCACGGGCACAT
60.678
55.000
0.00
0.00
0.00
3.21
2654
3291
0.541392
ACTAGCGATGAACATGGCCA
59.459
50.000
8.56
8.56
42.49
5.36
2676
3313
1.194781
ACGGTCATCTTCCTGGCACT
61.195
55.000
0.00
0.00
0.00
4.40
2677
3314
0.460987
CGGTCATCTTCCTGGCACTC
60.461
60.000
0.00
0.00
0.00
3.51
2678
3315
0.460987
GGTCATCTTCCTGGCACTCG
60.461
60.000
0.00
0.00
0.00
4.18
2679
3316
0.532573
GTCATCTTCCTGGCACTCGA
59.467
55.000
0.00
0.00
0.00
4.04
2681
3318
1.410517
TCATCTTCCTGGCACTCGATC
59.589
52.381
0.00
0.00
0.00
3.69
2682
3319
1.411977
CATCTTCCTGGCACTCGATCT
59.588
52.381
0.00
0.00
0.00
2.75
2683
3320
0.820226
TCTTCCTGGCACTCGATCTG
59.180
55.000
0.00
0.00
0.00
2.90
2684
3321
0.820226
CTTCCTGGCACTCGATCTGA
59.180
55.000
0.00
0.00
0.00
3.27
2685
3322
1.411977
CTTCCTGGCACTCGATCTGAT
59.588
52.381
0.00
0.00
0.00
2.90
2734
3593
0.188342
AGTTTCCACATGGGTTGCCT
59.812
50.000
0.00
0.00
38.11
4.75
2747
3606
0.610232
GTTGCCTCTGCCACCAGATT
60.610
55.000
0.00
0.00
46.44
2.40
2770
3629
2.352960
GGTGAAGAAGGCGCAATAAGAG
59.647
50.000
10.83
0.00
0.00
2.85
2780
3639
2.843701
CGCAATAAGAGGCTGGATCTT
58.156
47.619
0.00
0.00
40.13
2.40
2827
3686
2.498167
GACCATAGCACCATCCACATC
58.502
52.381
0.00
0.00
0.00
3.06
2832
3691
1.524621
GCACCATCCACATCCTCCG
60.525
63.158
0.00
0.00
0.00
4.63
2842
3724
0.108585
ACATCCTCCGCACAACAAGT
59.891
50.000
0.00
0.00
0.00
3.16
2854
3736
2.869801
CACAACAAGTAGCAACTTCCGA
59.130
45.455
0.00
0.00
44.28
4.55
2867
3749
3.771577
ACTTCCGAAGATTGTTGTCCT
57.228
42.857
15.23
0.00
0.00
3.85
2880
3762
3.391965
TGTTGTCCTGATGCAAAAATGC
58.608
40.909
0.00
0.00
0.00
3.56
2916
3798
0.667993
ATGGTGACCGCACAACTTTG
59.332
50.000
0.00
0.00
46.96
2.77
2990
3873
0.676782
GGCACGGCAAGGTATCAACT
60.677
55.000
0.00
0.00
0.00
3.16
3118
4007
5.705609
TTAGCGACTGATACATGCATAGA
57.294
39.130
0.00
0.00
0.00
1.98
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
13
14
6.896021
AAGCCATCCTTCTCATAATTGATG
57.104
37.500
0.00
0.00
36.82
3.07
131
214
3.011566
ACACTGTGGTGATGTGGAAAA
57.988
42.857
13.09
0.00
45.61
2.29
147
230
8.840833
AAAACAAATGGAAAACTACAAACACT
57.159
26.923
0.00
0.00
0.00
3.55
162
245
7.220491
GGAAAGTGCAATTTTGAAAACAAATGG
59.780
33.333
14.04
0.00
0.00
3.16
170
253
8.729805
ACAATTAGGAAAGTGCAATTTTGAAA
57.270
26.923
14.04
8.47
34.03
2.69
210
293
8.918961
ACATCGAAACAAAACAAATGTTAGAA
57.081
26.923
0.00
0.00
39.98
2.10
255
434
9.810545
GCAAAACTTTGGGCACTTTTATATATA
57.189
29.630
4.45
0.00
38.57
0.86
256
435
8.317679
TGCAAAACTTTGGGCACTTTTATATAT
58.682
29.630
4.45
0.00
38.57
0.86
257
436
7.671302
TGCAAAACTTTGGGCACTTTTATATA
58.329
30.769
4.45
0.00
38.57
0.86
258
437
6.529220
TGCAAAACTTTGGGCACTTTTATAT
58.471
32.000
4.45
0.00
38.57
0.86
259
438
5.918608
TGCAAAACTTTGGGCACTTTTATA
58.081
33.333
4.45
0.00
38.57
0.98
260
439
4.775236
TGCAAAACTTTGGGCACTTTTAT
58.225
34.783
4.45
0.00
38.57
1.40
261
440
4.207891
TGCAAAACTTTGGGCACTTTTA
57.792
36.364
4.45
0.00
38.57
1.52
262
441
3.064900
TGCAAAACTTTGGGCACTTTT
57.935
38.095
4.45
0.00
38.57
2.27
263
442
2.777832
TGCAAAACTTTGGGCACTTT
57.222
40.000
4.45
0.00
38.57
2.66
264
443
3.280197
AATGCAAAACTTTGGGCACTT
57.720
38.095
4.45
0.00
39.34
3.16
265
444
3.280197
AAATGCAAAACTTTGGGCACT
57.720
38.095
4.45
0.00
39.34
4.40
266
445
5.687770
AATAAATGCAAAACTTTGGGCAC
57.312
34.783
4.45
0.00
39.34
5.01
267
446
5.824624
TCAAATAAATGCAAAACTTTGGGCA
59.175
32.000
12.38
4.19
41.00
5.36
268
447
6.311055
TCAAATAAATGCAAAACTTTGGGC
57.689
33.333
12.38
0.00
38.57
5.36
269
448
6.372981
GCTCAAATAAATGCAAAACTTTGGG
58.627
36.000
12.38
10.97
38.57
4.12
270
449
6.017275
TGGCTCAAATAAATGCAAAACTTTGG
60.017
34.615
12.38
7.04
38.57
3.28
271
450
6.957150
TGGCTCAAATAAATGCAAAACTTTG
58.043
32.000
0.00
0.00
41.03
2.77
272
451
7.748691
ATGGCTCAAATAAATGCAAAACTTT
57.251
28.000
0.00
0.00
0.00
2.66
300
479
9.596308
TCTATGAATAGTACTAACAAGGCCATA
57.404
33.333
5.01
6.42
0.00
2.74
301
480
8.492415
TCTATGAATAGTACTAACAAGGCCAT
57.508
34.615
5.01
0.00
0.00
4.40
302
481
7.907841
TCTATGAATAGTACTAACAAGGCCA
57.092
36.000
5.01
0.00
0.00
5.36
324
503
9.817809
ACGAATGATTACAACACTAACATATCT
57.182
29.630
0.00
0.00
0.00
1.98
325
504
9.849607
CACGAATGATTACAACACTAACATATC
57.150
33.333
0.00
0.00
0.00
1.63
326
505
8.335356
GCACGAATGATTACAACACTAACATAT
58.665
33.333
0.00
0.00
0.00
1.78
327
506
7.547722
AGCACGAATGATTACAACACTAACATA
59.452
33.333
0.00
0.00
0.00
2.29
328
507
6.371548
AGCACGAATGATTACAACACTAACAT
59.628
34.615
0.00
0.00
0.00
2.71
329
508
5.699001
AGCACGAATGATTACAACACTAACA
59.301
36.000
0.00
0.00
0.00
2.41
330
509
6.165659
AGCACGAATGATTACAACACTAAC
57.834
37.500
0.00
0.00
0.00
2.34
331
510
7.094631
ACTAGCACGAATGATTACAACACTAA
58.905
34.615
0.00
0.00
0.00
2.24
332
511
6.627243
ACTAGCACGAATGATTACAACACTA
58.373
36.000
0.00
0.00
0.00
2.74
333
512
5.479306
ACTAGCACGAATGATTACAACACT
58.521
37.500
0.00
0.00
0.00
3.55
334
513
5.779806
ACTAGCACGAATGATTACAACAC
57.220
39.130
0.00
0.00
0.00
3.32
335
514
6.795098
AAACTAGCACGAATGATTACAACA
57.205
33.333
0.00
0.00
0.00
3.33
336
515
8.181487
TCTAAACTAGCACGAATGATTACAAC
57.819
34.615
0.00
0.00
0.00
3.32
337
516
8.766000
TTCTAAACTAGCACGAATGATTACAA
57.234
30.769
0.00
0.00
0.00
2.41
348
527
6.436843
AATGGGAAATTCTAAACTAGCACG
57.563
37.500
0.00
0.00
0.00
5.34
375
555
9.472361
CAGATCCCAATAATTCATTTCAATGTC
57.528
33.333
0.00
0.00
37.65
3.06
407
587
5.133221
ACTACAAACCCCATGAAGATATGC
58.867
41.667
0.00
0.00
0.00
3.14
421
601
8.958119
TCCATATAATTGTGAGACTACAAACC
57.042
34.615
0.00
0.00
43.13
3.27
467
647
0.398696
ACGACCCACACAAATAGCCA
59.601
50.000
0.00
0.00
0.00
4.75
481
664
3.126343
AGTCACACAAAAGAACAACGACC
59.874
43.478
0.00
0.00
0.00
4.79
565
748
2.375146
TCGAGCTGCAGTTGGTCTATA
58.625
47.619
16.64
0.00
0.00
1.31
625
809
2.166459
TCATCTTTACGCAGTAGCAGCT
59.834
45.455
0.00
0.00
46.93
4.24
720
905
0.242017
CGTCGTACCCGTCCTTTCTT
59.758
55.000
0.00
0.00
35.01
2.52
729
914
0.918619
CAAAGCATACGTCGTACCCG
59.081
55.000
7.36
0.69
0.00
5.28
773
1246
4.853924
ATAGGTATTACGTTGTACCCGG
57.146
45.455
19.57
0.00
41.01
5.73
900
1373
9.482627
GTAAAGTTCATGAATCCTATCTACTGG
57.517
37.037
12.12
0.00
0.00
4.00
901
1374
9.482627
GGTAAAGTTCATGAATCCTATCTACTG
57.517
37.037
12.12
0.00
0.00
2.74
902
1375
8.652290
GGGTAAAGTTCATGAATCCTATCTACT
58.348
37.037
12.12
0.00
0.00
2.57
903
1376
8.429641
TGGGTAAAGTTCATGAATCCTATCTAC
58.570
37.037
12.12
7.58
0.00
2.59
963
1437
4.929707
CTATTCCGGGGGTGCCGC
62.930
72.222
0.00
0.00
0.00
6.53
966
1440
2.192175
CCACTATTCCGGGGGTGC
59.808
66.667
0.00
0.00
0.00
5.01
968
1442
1.999002
CCACCACTATTCCGGGGGT
60.999
63.158
0.00
0.00
41.40
4.95
969
1443
2.752807
CCCACCACTATTCCGGGGG
61.753
68.421
0.00
0.00
46.45
5.40
971
1445
2.192175
GCCCACCACTATTCCGGG
59.808
66.667
0.00
0.00
40.11
5.73
974
1448
1.032114
GCTGTGCCCACCACTATTCC
61.032
60.000
0.00
0.00
44.92
3.01
975
1449
1.369091
CGCTGTGCCCACCACTATTC
61.369
60.000
0.00
0.00
44.92
1.75
976
1450
1.377202
CGCTGTGCCCACCACTATT
60.377
57.895
0.00
0.00
44.92
1.73
977
1451
2.268920
CGCTGTGCCCACCACTAT
59.731
61.111
0.00
0.00
44.92
2.12
978
1452
4.015406
CCGCTGTGCCCACCACTA
62.015
66.667
0.00
0.00
44.92
2.74
986
1460
2.397413
ATATAGGGTGCCGCTGTGCC
62.397
60.000
0.00
0.00
0.00
5.01
989
1463
2.764572
GGTATATATAGGGTGCCGCTGT
59.235
50.000
0.00
0.00
0.00
4.40
1036
1513
0.880278
TCGAACTGGTTGCTGTCTGC
60.880
55.000
0.00
0.00
43.25
4.26
1082
1565
1.070289
GTTCACCCGACCTCTGTTTCT
59.930
52.381
0.00
0.00
0.00
2.52
1239
1778
1.566018
GCCACGTTGGTCTCGAAAGG
61.566
60.000
6.02
0.00
40.46
3.11
1484
2035
1.954382
ACGAACTCGCTCAGGCATATA
59.046
47.619
0.00
0.00
44.43
0.86
1544
2095
4.680237
CAGCGGACGTGGAAGCCA
62.680
66.667
0.00
0.00
0.00
4.75
1633
2184
2.867855
TTCGTGTCTGCCGCCTTCT
61.868
57.895
0.00
0.00
0.00
2.85
1733
2294
1.597854
CACGCACAAGAGCTTGGGA
60.598
57.895
16.20
0.00
46.48
4.37
1735
2296
1.280746
CACACGCACAAGAGCTTGG
59.719
57.895
14.14
5.09
44.45
3.61
1765
2326
5.412640
TGACAAACATGGCATCAATCATTC
58.587
37.500
0.00
0.00
0.00
2.67
1774
2335
1.885157
CGGCTGACAAACATGGCAT
59.115
52.632
0.00
0.00
0.00
4.40
1798
2359
8.753497
TCGATCATATATACATTCCACTAGCT
57.247
34.615
0.00
0.00
0.00
3.32
1838
2404
1.071041
GCGCGGTCGAATATTTACACC
60.071
52.381
8.83
0.00
38.10
4.16
1875
2441
4.520111
AGCATGACTTTACACATGAGCAAA
59.480
37.500
0.00
0.00
44.28
3.68
1877
2443
3.437741
CAGCATGACTTTACACATGAGCA
59.562
43.478
0.00
0.00
44.28
4.26
1878
2444
3.438087
ACAGCATGACTTTACACATGAGC
59.562
43.478
0.00
0.00
44.28
4.26
1879
2445
4.670992
GCACAGCATGACTTTACACATGAG
60.671
45.833
0.00
0.00
44.28
2.90
1880
2446
3.189080
GCACAGCATGACTTTACACATGA
59.811
43.478
0.00
0.00
44.28
3.07
1882
2448
3.415212
AGCACAGCATGACTTTACACAT
58.585
40.909
0.00
0.00
39.69
3.21
1883
2449
2.849942
AGCACAGCATGACTTTACACA
58.150
42.857
0.00
0.00
39.69
3.72
1884
2450
3.904136
AAGCACAGCATGACTTTACAC
57.096
42.857
0.00
0.00
39.69
2.90
1885
2451
4.641396
AGTAAGCACAGCATGACTTTACA
58.359
39.130
0.00
0.00
39.69
2.41
1886
2452
5.613358
AAGTAAGCACAGCATGACTTTAC
57.387
39.130
0.00
0.00
39.69
2.01
1887
2453
5.562696
GCAAAGTAAGCACAGCATGACTTTA
60.563
40.000
0.00
0.00
39.69
1.85
1888
2454
4.794003
GCAAAGTAAGCACAGCATGACTTT
60.794
41.667
0.00
0.00
39.69
2.66
1891
2457
2.227388
AGCAAAGTAAGCACAGCATGAC
59.773
45.455
0.00
0.00
39.69
3.06
1892
2458
2.485426
GAGCAAAGTAAGCACAGCATGA
59.515
45.455
0.00
0.00
39.69
3.07
1893
2459
2.227149
TGAGCAAAGTAAGCACAGCATG
59.773
45.455
0.00
0.00
46.00
4.06
1894
2460
2.507484
TGAGCAAAGTAAGCACAGCAT
58.493
42.857
0.00
0.00
0.00
3.79
1896
2462
2.227388
ACATGAGCAAAGTAAGCACAGC
59.773
45.455
0.00
0.00
36.10
4.40
1897
2463
3.251729
ACACATGAGCAAAGTAAGCACAG
59.748
43.478
0.00
0.00
36.10
3.66
1901
2467
2.162408
GGGACACATGAGCAAAGTAAGC
59.838
50.000
0.00
0.00
0.00
3.09
1902
2468
3.411446
TGGGACACATGAGCAAAGTAAG
58.589
45.455
0.00
0.00
0.00
2.34
1960
2533
0.108615
CCCATGACACAGACGGAGAC
60.109
60.000
0.00
0.00
0.00
3.36
1970
2543
1.734707
CGGTCGTTAGTCCCATGACAC
60.735
57.143
0.00
0.00
44.33
3.67
1971
2544
0.528924
CGGTCGTTAGTCCCATGACA
59.471
55.000
0.00
0.00
44.33
3.58
2003
2576
8.878769
CAATTTATGGAATTCCGTTTAAAAGGG
58.121
33.333
24.06
10.81
35.79
3.95
2042
2616
0.249911
GACAGCGTCACCTTTGTCCT
60.250
55.000
4.20
0.00
35.15
3.85
2047
2621
3.290776
GTGAGACAGCGTCACCTTT
57.709
52.632
10.52
0.00
38.75
3.11
2058
2632
5.091552
ACATTCCCTAAGTAAGGTGAGACA
58.908
41.667
0.00
0.00
44.90
3.41
2071
2645
4.481368
AGCATCGTTGTACATTCCCTAA
57.519
40.909
0.00
0.00
0.00
2.69
2075
2649
5.289595
TGAGATAGCATCGTTGTACATTCC
58.710
41.667
0.00
0.00
0.00
3.01
2086
2660
4.022503
TCTGACAATCCTGAGATAGCATCG
60.023
45.833
0.00
0.00
30.42
3.84
2108
2682
9.713713
GTCCTTCACCTTAAGATTTATCCTATC
57.286
37.037
3.36
0.00
0.00
2.08
2109
2683
9.225682
TGTCCTTCACCTTAAGATTTATCCTAT
57.774
33.333
3.36
0.00
0.00
2.57
2228
2840
8.097038
TGTACAATTCCATAGCATTATCTCTCC
58.903
37.037
0.00
0.00
0.00
3.71
2264
2884
5.046304
GCCACATAATCTAGAGGAGGCAATA
60.046
44.000
15.19
0.00
39.35
1.90
2310
2947
9.592196
AAACATTGCTATGATGAATAAGGGTAT
57.408
29.630
15.23
0.00
35.65
2.73
2332
2969
5.855740
AACCCCGACAAGAAATAAAAACA
57.144
34.783
0.00
0.00
0.00
2.83
2345
2982
1.152922
GTCACCCAAAACCCCGACA
60.153
57.895
0.00
0.00
0.00
4.35
2389
3026
4.831107
ACAATTGCAAAGTTTCTGGTGTT
58.169
34.783
1.71
0.00
0.00
3.32
2524
3161
1.341913
ATGGTGCCGGCTATGGTGTA
61.342
55.000
29.70
0.07
0.00
2.90
2525
3162
2.210144
AATGGTGCCGGCTATGGTGT
62.210
55.000
29.70
3.74
0.00
4.16
2551
3188
2.295885
GTCTGAATGGATGGCTTCAGG
58.704
52.381
11.95
0.00
45.41
3.86
2590
3227
0.173708
GAGTCGTCTGGCCGAATCTT
59.826
55.000
0.00
0.00
45.48
2.40
2601
3238
1.228894
TTGCCTCCAGGAGTCGTCT
60.229
57.895
15.86
0.00
37.39
4.18
2649
3286
0.605319
GAAGATGACCGTTGTGGCCA
60.605
55.000
0.00
0.00
43.94
5.36
2654
3291
0.321653
GCCAGGAAGATGACCGTTGT
60.322
55.000
0.00
0.00
0.00
3.32
2678
3315
2.224378
TGGGGATTTGCTCGATCAGATC
60.224
50.000
10.44
10.44
0.00
2.75
2679
3316
1.770658
TGGGGATTTGCTCGATCAGAT
59.229
47.619
0.00
0.00
0.00
2.90
2681
3318
1.303309
GTGGGGATTTGCTCGATCAG
58.697
55.000
0.00
0.00
0.00
2.90
2682
3319
0.107214
GGTGGGGATTTGCTCGATCA
60.107
55.000
0.00
0.00
0.00
2.92
2683
3320
0.107214
TGGTGGGGATTTGCTCGATC
60.107
55.000
0.00
0.00
0.00
3.69
2684
3321
0.107017
CTGGTGGGGATTTGCTCGAT
60.107
55.000
0.00
0.00
0.00
3.59
2685
3322
1.198094
TCTGGTGGGGATTTGCTCGA
61.198
55.000
0.00
0.00
0.00
4.04
2747
3606
2.192664
TATTGCGCCTTCTTCACCAA
57.807
45.000
4.18
0.00
0.00
3.67
2770
3629
3.207669
CGCCAGCAAGATCCAGCC
61.208
66.667
3.57
0.00
0.00
4.85
2795
3654
3.040477
TGCTATGGTCCACTGATGATGA
58.960
45.455
0.00
0.00
0.00
2.92
2827
3686
0.602638
TGCTACTTGTTGTGCGGAGG
60.603
55.000
0.00
0.00
0.00
4.30
2832
3691
2.602217
CGGAAGTTGCTACTTGTTGTGC
60.602
50.000
18.34
2.71
44.51
4.57
2842
3724
4.385825
ACAACAATCTTCGGAAGTTGCTA
58.614
39.130
21.91
5.97
42.47
3.49
2854
3736
5.534207
TTTTGCATCAGGACAACAATCTT
57.466
34.783
0.00
0.00
0.00
2.40
2867
3749
1.079266
GCGGGGCATTTTTGCATCA
60.079
52.632
0.00
0.00
36.33
3.07
2897
3779
0.667993
CAAAGTTGTGCGGTCACCAT
59.332
50.000
0.00
0.00
42.46
3.55
2930
3812
1.987855
CCCTCCTCGCCACCTACAA
60.988
63.158
0.00
0.00
0.00
2.41
2931
3813
2.363795
CCCTCCTCGCCACCTACA
60.364
66.667
0.00
0.00
0.00
2.74
2933
3815
2.711899
ATCCCCTCCTCGCCACCTA
61.712
63.158
0.00
0.00
0.00
3.08
3018
3901
9.046296
CCAGCAAATATCTTTCTCTAAACGTAT
57.954
33.333
0.00
0.00
0.00
3.06
3118
4007
4.558697
GCGATTTAGAGCAGGGTTGTTTTT
60.559
41.667
0.00
0.00
0.00
1.94
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.