Multiple sequence alignment - TraesCS5B01G308000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G308000 chr5B 100.000 3272 0 0 1 3272 491072282 491069011 0.000000e+00 6043
1 TraesCS5B01G308000 chr5B 91.803 183 12 2 2749 2928 65726581 65726399 5.420000e-63 252
2 TraesCS5B01G308000 chr5B 94.805 154 7 1 2605 2758 491061746 491061594 4.220000e-59 239
3 TraesCS5B01G308000 chr5D 95.000 1400 55 5 865 2258 409018520 409017130 0.000000e+00 2183
4 TraesCS5B01G308000 chr5D 89.073 604 47 9 1 597 409019108 409018517 0.000000e+00 732
5 TraesCS5B01G308000 chr5D 90.890 483 31 3 2285 2758 409016964 409016486 1.280000e-178 636
6 TraesCS5B01G308000 chr5A 95.579 1244 46 4 1015 2258 520375647 520374413 0.000000e+00 1984
7 TraesCS5B01G308000 chr5A 90.810 457 25 6 2302 2749 520374178 520373730 2.170000e-166 595
8 TraesCS5B01G308000 chr5A 86.434 516 58 7 84 597 520376263 520375758 3.690000e-154 555
9 TraesCS5B01G308000 chr5A 93.333 120 7 1 865 984 520375761 520375643 3.360000e-40 176
10 TraesCS5B01G308000 chr4A 89.356 404 20 9 2757 3138 705331405 705331003 1.360000e-133 486
11 TraesCS5B01G308000 chr4A 88.366 404 29 5 2753 3138 705326231 705325828 1.370000e-128 470
12 TraesCS5B01G308000 chr4A 90.079 252 22 2 604 852 207362940 207362689 1.130000e-84 324
13 TraesCS5B01G308000 chr4A 87.225 227 14 7 2932 3147 311604255 311604477 9.070000e-61 244
14 TraesCS5B01G308000 chr4A 89.157 166 11 4 2987 3147 311607581 311607744 1.990000e-47 200
15 TraesCS5B01G308000 chr7B 87.438 406 27 8 2756 3138 662235431 662235027 2.320000e-121 446
16 TraesCS5B01G308000 chr7B 84.841 409 28 9 2753 3138 662230462 662230065 6.620000e-102 381
17 TraesCS5B01G308000 chr7B 91.860 172 13 1 2757 2928 552074646 552074476 4.220000e-59 239
18 TraesCS5B01G308000 chr7A 90.361 249 22 1 604 850 515222322 515222570 3.150000e-85 326
19 TraesCS5B01G308000 chr7A 88.302 265 27 3 589 850 669666354 669666617 6.820000e-82 315
20 TraesCS5B01G308000 chr7A 84.375 224 21 10 2932 3144 104546912 104547132 1.190000e-49 207
21 TraesCS5B01G308000 chr1A 88.519 270 25 5 585 850 572865333 572865066 4.070000e-84 322
22 TraesCS5B01G308000 chr1A 90.058 171 17 0 2754 2924 27513950 27513780 4.250000e-54 222
23 TraesCS5B01G308000 chr6A 88.636 264 26 3 592 852 410576034 410575772 5.270000e-83 318
24 TraesCS5B01G308000 chr6A 83.511 188 17 3 2970 3144 46126118 46125932 2.610000e-36 163
25 TraesCS5B01G308000 chr6A 91.150 113 9 1 3032 3144 46094237 46094126 5.650000e-33 152
26 TraesCS5B01G308000 chr2D 89.641 251 22 3 592 839 455942225 455942474 1.890000e-82 316
27 TraesCS5B01G308000 chr2A 89.641 251 23 2 604 851 606519074 606519324 1.890000e-82 316
28 TraesCS5B01G308000 chr3D 88.550 262 25 3 592 851 305497409 305497151 2.450000e-81 313
29 TraesCS5B01G308000 chr4B 87.454 271 30 3 583 850 22857348 22857617 3.170000e-80 309
30 TraesCS5B01G308000 chr4B 87.225 227 16 6 2932 3147 349117239 349117463 2.520000e-61 246
31 TraesCS5B01G308000 chr4B 90.164 183 17 1 2753 2934 631580176 631580358 1.520000e-58 237
32 TraesCS5B01G308000 chr3B 88.106 227 14 6 2932 3147 502813663 502813887 1.160000e-64 257
33 TraesCS5B01G308000 chr2B 90.058 171 16 1 2757 2926 541188738 541188568 1.530000e-53 220
34 TraesCS5B01G308000 chr3A 88.136 177 21 0 2757 2933 730384560 730384736 9.200000e-51 211
35 TraesCS5B01G308000 chr6D 91.667 144 10 1 3004 3147 29742272 29742131 7.160000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G308000 chr5B 491069011 491072282 3271 True 6043.000000 6043 100.000000 1 3272 1 chr5B.!!$R3 3271
1 TraesCS5B01G308000 chr5D 409016486 409019108 2622 True 1183.666667 2183 91.654333 1 2758 3 chr5D.!!$R1 2757
2 TraesCS5B01G308000 chr5A 520373730 520376263 2533 True 827.500000 1984 91.539000 84 2749 4 chr5A.!!$R1 2665
3 TraesCS5B01G308000 chr4A 311604255 311607744 3489 False 222.000000 244 88.191000 2932 3147 2 chr4A.!!$F1 215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 865 0.032017 ACGAAGAGAGTATGGGGCCT 60.032 55.0 0.84 0.0 0.0 5.19 F
867 875 0.629058 TATGGGGCCTTTTGTCCTCC 59.371 55.0 0.84 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 1788 0.655626 GTGTCTTCGTCGACGTCGTT 60.656 55.000 34.4 0.0 40.8 3.85 R
2775 3014 1.000955 TGGTTCTTCGTCCTCTCTTGC 59.999 52.381 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 4.997395 ACAATATATGTGCGTCTGAATCCC 59.003 41.667 0.00 0.00 41.93 3.85
69 71 5.221722 ACAATATATGTGCGTCTGAATCCCT 60.222 40.000 0.00 0.00 41.93 4.20
98 100 4.244066 CTCTTGGCTCCAATCGATCTATG 58.756 47.826 0.00 0.00 35.20 2.23
196 198 3.060602 CTCGTCTGAAAGGGTCTGTTTC 58.939 50.000 0.00 0.00 34.95 2.78
287 290 6.222389 TGAATTGCTTACCACATGGAAAAAG 58.778 36.000 4.53 6.50 38.94 2.27
291 294 4.521256 TGCTTACCACATGGAAAAAGGTAC 59.479 41.667 4.53 0.00 38.94 3.34
419 426 9.685005 GTGCTTTAAATATTGTACGTCTAAGTG 57.315 33.333 0.00 0.00 0.00 3.16
420 427 9.642327 TGCTTTAAATATTGTACGTCTAAGTGA 57.358 29.630 0.00 0.00 0.00 3.41
426 433 9.793252 AAATATTGTACGTCTAAGTGATACGTT 57.207 29.630 4.99 0.00 46.86 3.99
431 438 7.973601 TGTACGTCTAAGTGATACGTTATTGA 58.026 34.615 4.99 0.00 46.86 2.57
466 474 4.647424 TCGTCCAAGCATTTTCTTTTGT 57.353 36.364 0.00 0.00 0.00 2.83
475 483 8.498358 CCAAGCATTTTCTTTTGTCTTTTATCC 58.502 33.333 0.00 0.00 0.00 2.59
535 543 7.720957 TGCAATAAATAAGGCACATCTAGACAT 59.279 33.333 0.00 0.00 0.00 3.06
597 605 7.179872 ACGGATTTAAACTTACCTTCTACTCCT 59.820 37.037 0.00 0.00 0.00 3.69
598 606 8.039538 CGGATTTAAACTTACCTTCTACTCCTT 58.960 37.037 0.00 0.00 0.00 3.36
599 607 9.736414 GGATTTAAACTTACCTTCTACTCCTTT 57.264 33.333 0.00 0.00 0.00 3.11
602 610 9.910267 TTTAAACTTACCTTCTACTCCTTTTGT 57.090 29.630 0.00 0.00 0.00 2.83
603 611 9.910267 TTAAACTTACCTTCTACTCCTTTTGTT 57.090 29.630 0.00 0.00 0.00 2.83
604 612 8.818622 AAACTTACCTTCTACTCCTTTTGTTT 57.181 30.769 0.00 0.00 0.00 2.83
605 613 8.818622 AACTTACCTTCTACTCCTTTTGTTTT 57.181 30.769 0.00 0.00 0.00 2.43
606 614 8.818622 ACTTACCTTCTACTCCTTTTGTTTTT 57.181 30.769 0.00 0.00 0.00 1.94
631 639 9.590451 TTTACTTAGTCCGTGTATTAGATTTGG 57.410 33.333 0.00 0.00 0.00 3.28
632 640 7.179076 ACTTAGTCCGTGTATTAGATTTGGT 57.821 36.000 0.00 0.00 0.00 3.67
633 641 7.263496 ACTTAGTCCGTGTATTAGATTTGGTC 58.737 38.462 0.00 0.00 0.00 4.02
634 642 5.670792 AGTCCGTGTATTAGATTTGGTCA 57.329 39.130 0.00 0.00 0.00 4.02
635 643 6.045072 AGTCCGTGTATTAGATTTGGTCAA 57.955 37.500 0.00 0.00 0.00 3.18
636 644 6.469410 AGTCCGTGTATTAGATTTGGTCAAA 58.531 36.000 0.00 0.00 34.46 2.69
637 645 6.594159 AGTCCGTGTATTAGATTTGGTCAAAG 59.406 38.462 2.55 0.00 33.32 2.77
638 646 6.370718 GTCCGTGTATTAGATTTGGTCAAAGT 59.629 38.462 2.55 0.00 33.32 2.66
639 647 6.592607 TCCGTGTATTAGATTTGGTCAAAGTC 59.407 38.462 2.55 1.51 33.32 3.01
640 648 6.370442 CCGTGTATTAGATTTGGTCAAAGTCA 59.630 38.462 2.55 0.00 33.32 3.41
641 649 7.094975 CCGTGTATTAGATTTGGTCAAAGTCAA 60.095 37.037 2.55 0.00 33.32 3.18
642 650 7.957484 CGTGTATTAGATTTGGTCAAAGTCAAG 59.043 37.037 2.55 0.00 33.32 3.02
643 651 7.750903 GTGTATTAGATTTGGTCAAAGTCAAGC 59.249 37.037 2.55 0.00 33.32 4.01
644 652 7.665559 TGTATTAGATTTGGTCAAAGTCAAGCT 59.334 33.333 2.55 0.00 33.32 3.74
645 653 6.959639 TTAGATTTGGTCAAAGTCAAGCTT 57.040 33.333 0.00 0.00 39.52 3.74
658 666 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
659 667 6.509418 AGTCAAGCTTTGTAAACTTTGACA 57.491 33.333 20.02 0.00 30.59 3.58
660 668 6.919721 AGTCAAGCTTTGTAAACTTTGACAA 58.080 32.000 20.02 0.88 33.81 3.18
661 669 7.375053 AGTCAAGCTTTGTAAACTTTGACAAA 58.625 30.769 20.02 0.00 41.90 2.83
799 807 8.738645 AGAAACTTGATCAAACTCTACAAAGT 57.261 30.769 9.88 0.00 0.00 2.66
800 808 9.178758 AGAAACTTGATCAAACTCTACAAAGTT 57.821 29.630 9.88 3.10 41.20 2.66
842 850 8.766000 TGATATGCAGAGTAAGTAAAAACGAA 57.234 30.769 0.00 0.00 0.00 3.85
843 851 8.869897 TGATATGCAGAGTAAGTAAAAACGAAG 58.130 33.333 0.00 0.00 0.00 3.79
844 852 8.997621 ATATGCAGAGTAAGTAAAAACGAAGA 57.002 30.769 0.00 0.00 0.00 2.87
845 853 6.764877 TGCAGAGTAAGTAAAAACGAAGAG 57.235 37.500 0.00 0.00 0.00 2.85
846 854 6.509656 TGCAGAGTAAGTAAAAACGAAGAGA 58.490 36.000 0.00 0.00 0.00 3.10
847 855 6.641314 TGCAGAGTAAGTAAAAACGAAGAGAG 59.359 38.462 0.00 0.00 0.00 3.20
848 856 6.641723 GCAGAGTAAGTAAAAACGAAGAGAGT 59.358 38.462 0.00 0.00 0.00 3.24
849 857 7.806960 GCAGAGTAAGTAAAAACGAAGAGAGTA 59.193 37.037 0.00 0.00 0.00 2.59
850 858 9.843334 CAGAGTAAGTAAAAACGAAGAGAGTAT 57.157 33.333 0.00 0.00 0.00 2.12
851 859 9.843334 AGAGTAAGTAAAAACGAAGAGAGTATG 57.157 33.333 0.00 0.00 0.00 2.39
852 860 8.983307 AGTAAGTAAAAACGAAGAGAGTATGG 57.017 34.615 0.00 0.00 0.00 2.74
853 861 8.033626 AGTAAGTAAAAACGAAGAGAGTATGGG 58.966 37.037 0.00 0.00 0.00 4.00
854 862 5.731591 AGTAAAAACGAAGAGAGTATGGGG 58.268 41.667 0.00 0.00 0.00 4.96
855 863 2.693267 AAACGAAGAGAGTATGGGGC 57.307 50.000 0.00 0.00 0.00 5.80
856 864 0.831307 AACGAAGAGAGTATGGGGCC 59.169 55.000 0.00 0.00 0.00 5.80
857 865 0.032017 ACGAAGAGAGTATGGGGCCT 60.032 55.000 0.84 0.00 0.00 5.19
858 866 1.123928 CGAAGAGAGTATGGGGCCTT 58.876 55.000 0.84 0.00 0.00 4.35
859 867 1.486726 CGAAGAGAGTATGGGGCCTTT 59.513 52.381 0.84 0.00 0.00 3.11
860 868 2.092914 CGAAGAGAGTATGGGGCCTTTT 60.093 50.000 0.84 0.00 0.00 2.27
861 869 3.282885 GAAGAGAGTATGGGGCCTTTTG 58.717 50.000 0.84 0.00 0.00 2.44
862 870 2.279173 AGAGAGTATGGGGCCTTTTGT 58.721 47.619 0.84 0.00 0.00 2.83
863 871 2.239907 AGAGAGTATGGGGCCTTTTGTC 59.760 50.000 0.84 0.00 0.00 3.18
864 872 1.285078 AGAGTATGGGGCCTTTTGTCC 59.715 52.381 0.84 0.00 0.00 4.02
865 873 1.285078 GAGTATGGGGCCTTTTGTCCT 59.715 52.381 0.84 0.00 0.00 3.85
866 874 1.285078 AGTATGGGGCCTTTTGTCCTC 59.715 52.381 0.84 0.00 0.00 3.71
867 875 0.629058 TATGGGGCCTTTTGTCCTCC 59.371 55.000 0.84 0.00 0.00 4.30
909 917 3.917329 TCGACCTCGAGGCTAATAATG 57.083 47.619 31.56 11.78 44.22 1.90
911 919 3.502595 TCGACCTCGAGGCTAATAATGAG 59.497 47.826 31.56 10.04 44.22 2.90
912 920 3.366476 CGACCTCGAGGCTAATAATGAGG 60.366 52.174 31.56 4.00 46.58 3.86
922 930 7.063898 CGAGGCTAATAATGAGGACAACATATG 59.936 40.741 0.00 0.00 0.00 1.78
939 947 6.349973 ACATATGTATCTCGTTTTGCACAG 57.650 37.500 6.56 0.00 0.00 3.66
953 961 6.470235 CGTTTTGCACAGATATCTGAAATTCC 59.530 38.462 34.16 16.59 46.59 3.01
986 994 2.351244 GGCAAAGTTGGGGCTAGGC 61.351 63.158 8.00 8.00 0.00 3.93
1060 1068 2.191513 CCGGGAGTCGATCGGCTTA 61.192 63.158 25.04 0.00 42.43 3.09
1452 1460 2.284995 GAGGCCCTGTCCCTGACT 60.285 66.667 0.00 0.00 33.15 3.41
1544 1552 4.451150 GGTCCTCGCCACGATGCA 62.451 66.667 0.00 0.00 34.61 3.96
1632 1640 2.279069 CCTGTCCTGCGTGAGAGGT 61.279 63.158 9.58 0.00 40.14 3.85
1679 1687 4.753662 CTCGGACCCCCTCGTGGA 62.754 72.222 4.76 0.00 35.39 4.02
1780 1788 0.250727 CTTCCGTTTCCCAAGGAGCA 60.251 55.000 0.00 0.00 35.23 4.26
1781 1789 0.183971 TTCCGTTTCCCAAGGAGCAA 59.816 50.000 0.00 0.00 35.23 3.91
1782 1790 0.536460 TCCGTTTCCCAAGGAGCAAC 60.536 55.000 0.00 0.00 31.21 4.17
1783 1791 1.574428 CGTTTCCCAAGGAGCAACG 59.426 57.895 6.29 6.29 38.80 4.10
1784 1792 0.882927 CGTTTCCCAAGGAGCAACGA 60.883 55.000 12.95 0.00 44.05 3.85
1785 1793 0.591659 GTTTCCCAAGGAGCAACGAC 59.408 55.000 0.00 0.00 31.21 4.34
1786 1794 0.882927 TTTCCCAAGGAGCAACGACG 60.883 55.000 0.00 0.00 31.21 5.12
1787 1795 2.030562 CCCAAGGAGCAACGACGT 59.969 61.111 0.00 0.00 0.00 4.34
2161 2175 3.936203 GGGTGAGTGGTGGCGACA 61.936 66.667 0.00 0.00 38.70 4.35
2266 2280 4.024725 CCGTCTTGGTACGTGAAAATTCAA 60.025 41.667 0.00 0.00 41.27 2.69
2267 2281 5.334569 CCGTCTTGGTACGTGAAAATTCAAT 60.335 40.000 0.00 0.00 41.27 2.57
2268 2282 6.140110 CGTCTTGGTACGTGAAAATTCAATT 58.860 36.000 0.00 0.00 39.21 2.32
2269 2283 6.635239 CGTCTTGGTACGTGAAAATTCAATTT 59.365 34.615 0.00 0.00 39.21 1.82
2270 2284 7.799447 CGTCTTGGTACGTGAAAATTCAATTTA 59.201 33.333 0.00 0.00 39.21 1.40
2478 2708 4.373116 GGACGGCGAGGAGTGCAA 62.373 66.667 16.62 0.00 0.00 4.08
2486 2716 1.079750 GAGGAGTGCAACCTCGTCC 60.080 63.158 20.44 6.85 43.25 4.79
2622 2861 1.352622 ACTGGGTGTTGGAGCAGGAA 61.353 55.000 0.00 0.00 0.00 3.36
2672 2911 0.666577 ACGCAAGCTAACTCCACGAC 60.667 55.000 0.00 0.00 45.62 4.34
2680 2919 2.056577 CTAACTCCACGACAACGGAAC 58.943 52.381 0.00 0.00 44.46 3.62
2681 2920 0.462789 AACTCCACGACAACGGAACT 59.537 50.000 0.00 0.00 44.46 3.01
2687 2926 2.666508 CCACGACAACGGAACTGATAAG 59.333 50.000 0.00 0.00 44.46 1.73
2742 2981 6.183360 GCGGAGGCATAATCAGATATTGTTAC 60.183 42.308 0.00 0.00 39.62 2.50
2745 2984 7.550906 GGAGGCATAATCAGATATTGTTACCTC 59.449 40.741 0.00 0.00 37.35 3.85
2758 2997 9.209175 GATATTGTTACCTCATACCACTTCATC 57.791 37.037 0.00 0.00 0.00 2.92
2759 2998 6.620877 TTGTTACCTCATACCACTTCATCT 57.379 37.500 0.00 0.00 0.00 2.90
2760 2999 7.727578 TTGTTACCTCATACCACTTCATCTA 57.272 36.000 0.00 0.00 0.00 1.98
2761 3000 7.108841 TGTTACCTCATACCACTTCATCTAC 57.891 40.000 0.00 0.00 0.00 2.59
2762 3001 6.895756 TGTTACCTCATACCACTTCATCTACT 59.104 38.462 0.00 0.00 0.00 2.57
2763 3002 5.860941 ACCTCATACCACTTCATCTACTG 57.139 43.478 0.00 0.00 0.00 2.74
2764 3003 4.100189 ACCTCATACCACTTCATCTACTGC 59.900 45.833 0.00 0.00 0.00 4.40
2765 3004 4.502259 CCTCATACCACTTCATCTACTGCC 60.502 50.000 0.00 0.00 0.00 4.85
2766 3005 4.030216 TCATACCACTTCATCTACTGCCA 58.970 43.478 0.00 0.00 0.00 4.92
2767 3006 2.770164 ACCACTTCATCTACTGCCAC 57.230 50.000 0.00 0.00 0.00 5.01
2768 3007 2.260822 ACCACTTCATCTACTGCCACT 58.739 47.619 0.00 0.00 0.00 4.00
2769 3008 3.441101 ACCACTTCATCTACTGCCACTA 58.559 45.455 0.00 0.00 0.00 2.74
2770 3009 4.033709 ACCACTTCATCTACTGCCACTAT 58.966 43.478 0.00 0.00 0.00 2.12
2771 3010 5.208890 ACCACTTCATCTACTGCCACTATA 58.791 41.667 0.00 0.00 0.00 1.31
2772 3011 5.661312 ACCACTTCATCTACTGCCACTATAA 59.339 40.000 0.00 0.00 0.00 0.98
2773 3012 6.156256 ACCACTTCATCTACTGCCACTATAAA 59.844 38.462 0.00 0.00 0.00 1.40
2774 3013 6.703607 CCACTTCATCTACTGCCACTATAAAG 59.296 42.308 0.00 0.00 0.00 1.85
2775 3014 6.703607 CACTTCATCTACTGCCACTATAAAGG 59.296 42.308 0.00 0.00 0.00 3.11
2786 3025 4.698575 CCACTATAAAGGCAAGAGAGGAC 58.301 47.826 0.00 0.00 0.00 3.85
2787 3026 4.363999 CACTATAAAGGCAAGAGAGGACG 58.636 47.826 0.00 0.00 0.00 4.79
2788 3027 4.098044 CACTATAAAGGCAAGAGAGGACGA 59.902 45.833 0.00 0.00 0.00 4.20
2789 3028 4.710375 ACTATAAAGGCAAGAGAGGACGAA 59.290 41.667 0.00 0.00 0.00 3.85
2790 3029 2.464157 AAAGGCAAGAGAGGACGAAG 57.536 50.000 0.00 0.00 0.00 3.79
2791 3030 1.633774 AAGGCAAGAGAGGACGAAGA 58.366 50.000 0.00 0.00 0.00 2.87
2792 3031 1.633774 AGGCAAGAGAGGACGAAGAA 58.366 50.000 0.00 0.00 0.00 2.52
2793 3032 1.273886 AGGCAAGAGAGGACGAAGAAC 59.726 52.381 0.00 0.00 0.00 3.01
2794 3033 1.673329 GGCAAGAGAGGACGAAGAACC 60.673 57.143 0.00 0.00 0.00 3.62
2795 3034 1.000955 GCAAGAGAGGACGAAGAACCA 59.999 52.381 0.00 0.00 0.00 3.67
2796 3035 2.928731 GCAAGAGAGGACGAAGAACCAG 60.929 54.545 0.00 0.00 0.00 4.00
2797 3036 2.558795 CAAGAGAGGACGAAGAACCAGA 59.441 50.000 0.00 0.00 0.00 3.86
2798 3037 3.094484 AGAGAGGACGAAGAACCAGAT 57.906 47.619 0.00 0.00 0.00 2.90
2799 3038 3.020984 AGAGAGGACGAAGAACCAGATC 58.979 50.000 0.00 0.00 0.00 2.75
2800 3039 2.755655 GAGAGGACGAAGAACCAGATCA 59.244 50.000 0.00 0.00 0.00 2.92
2801 3040 3.370104 AGAGGACGAAGAACCAGATCAT 58.630 45.455 0.00 0.00 0.00 2.45
2802 3041 3.383185 AGAGGACGAAGAACCAGATCATC 59.617 47.826 0.00 0.00 0.00 2.92
2803 3042 2.432510 AGGACGAAGAACCAGATCATCC 59.567 50.000 0.00 0.00 0.00 3.51
2804 3043 2.432510 GGACGAAGAACCAGATCATCCT 59.567 50.000 0.00 0.00 0.00 3.24
2805 3044 3.637229 GGACGAAGAACCAGATCATCCTA 59.363 47.826 0.00 0.00 0.00 2.94
2806 3045 4.282195 GGACGAAGAACCAGATCATCCTAT 59.718 45.833 0.00 0.00 0.00 2.57
2807 3046 5.461032 ACGAAGAACCAGATCATCCTATC 57.539 43.478 0.00 0.00 0.00 2.08
2808 3047 4.282195 ACGAAGAACCAGATCATCCTATCC 59.718 45.833 0.00 0.00 0.00 2.59
2809 3048 4.281941 CGAAGAACCAGATCATCCTATCCA 59.718 45.833 0.00 0.00 0.00 3.41
2810 3049 5.046735 CGAAGAACCAGATCATCCTATCCAT 60.047 44.000 0.00 0.00 0.00 3.41
2811 3050 6.371595 AAGAACCAGATCATCCTATCCATC 57.628 41.667 0.00 0.00 0.00 3.51
2812 3051 5.409712 AGAACCAGATCATCCTATCCATCA 58.590 41.667 0.00 0.00 0.00 3.07
2813 3052 5.848369 AGAACCAGATCATCCTATCCATCAA 59.152 40.000 0.00 0.00 0.00 2.57
2814 3053 6.331042 AGAACCAGATCATCCTATCCATCAAA 59.669 38.462 0.00 0.00 0.00 2.69
2815 3054 6.520021 ACCAGATCATCCTATCCATCAAAA 57.480 37.500 0.00 0.00 0.00 2.44
2816 3055 6.302269 ACCAGATCATCCTATCCATCAAAAC 58.698 40.000 0.00 0.00 0.00 2.43
2817 3056 5.709164 CCAGATCATCCTATCCATCAAAACC 59.291 44.000 0.00 0.00 0.00 3.27
2818 3057 6.466904 CCAGATCATCCTATCCATCAAAACCT 60.467 42.308 0.00 0.00 0.00 3.50
2819 3058 6.430308 CAGATCATCCTATCCATCAAAACCTG 59.570 42.308 0.00 0.00 0.00 4.00
2820 3059 4.464008 TCATCCTATCCATCAAAACCTGC 58.536 43.478 0.00 0.00 0.00 4.85
2821 3060 4.079844 TCATCCTATCCATCAAAACCTGCA 60.080 41.667 0.00 0.00 0.00 4.41
2822 3061 4.314522 TCCTATCCATCAAAACCTGCAA 57.685 40.909 0.00 0.00 0.00 4.08
2823 3062 4.870636 TCCTATCCATCAAAACCTGCAAT 58.129 39.130 0.00 0.00 0.00 3.56
2824 3063 4.889409 TCCTATCCATCAAAACCTGCAATC 59.111 41.667 0.00 0.00 0.00 2.67
2825 3064 4.891756 CCTATCCATCAAAACCTGCAATCT 59.108 41.667 0.00 0.00 0.00 2.40
2826 3065 4.730949 ATCCATCAAAACCTGCAATCTG 57.269 40.909 0.00 0.00 0.00 2.90
2827 3066 3.765381 TCCATCAAAACCTGCAATCTGA 58.235 40.909 0.00 0.00 0.00 3.27
2828 3067 4.346730 TCCATCAAAACCTGCAATCTGAT 58.653 39.130 0.00 0.00 0.00 2.90
2829 3068 4.158949 TCCATCAAAACCTGCAATCTGATG 59.841 41.667 13.16 13.16 39.77 3.07
2830 3069 4.430007 CATCAAAACCTGCAATCTGATGG 58.570 43.478 12.62 0.00 37.55 3.51
2831 3070 3.499338 TCAAAACCTGCAATCTGATGGT 58.501 40.909 0.00 0.00 0.00 3.55
2832 3071 3.507233 TCAAAACCTGCAATCTGATGGTC 59.493 43.478 0.00 0.00 0.00 4.02
2833 3072 3.446442 AAACCTGCAATCTGATGGTCT 57.554 42.857 0.00 0.00 0.00 3.85
2834 3073 4.574674 AAACCTGCAATCTGATGGTCTA 57.425 40.909 0.00 0.00 0.00 2.59
2835 3074 3.550437 ACCTGCAATCTGATGGTCTAC 57.450 47.619 0.00 0.00 0.00 2.59
2836 3075 2.840038 ACCTGCAATCTGATGGTCTACA 59.160 45.455 0.00 0.00 0.00 2.74
2837 3076 3.457380 ACCTGCAATCTGATGGTCTACAT 59.543 43.478 0.00 0.00 44.18 2.29
2847 3086 1.951209 TGGTCTACATCCTTCCAGCA 58.049 50.000 0.00 0.00 0.00 4.41
2848 3087 2.481441 TGGTCTACATCCTTCCAGCAT 58.519 47.619 0.00 0.00 0.00 3.79
2849 3088 3.653164 TGGTCTACATCCTTCCAGCATA 58.347 45.455 0.00 0.00 0.00 3.14
2850 3089 3.388024 TGGTCTACATCCTTCCAGCATAC 59.612 47.826 0.00 0.00 0.00 2.39
2851 3090 3.643792 GGTCTACATCCTTCCAGCATACT 59.356 47.826 0.00 0.00 0.00 2.12
2852 3091 4.833380 GGTCTACATCCTTCCAGCATACTA 59.167 45.833 0.00 0.00 0.00 1.82
2853 3092 5.304614 GGTCTACATCCTTCCAGCATACTAA 59.695 44.000 0.00 0.00 0.00 2.24
2854 3093 6.183360 GGTCTACATCCTTCCAGCATACTAAA 60.183 42.308 0.00 0.00 0.00 1.85
2855 3094 6.702282 GTCTACATCCTTCCAGCATACTAAAC 59.298 42.308 0.00 0.00 0.00 2.01
2856 3095 4.442706 ACATCCTTCCAGCATACTAAACG 58.557 43.478 0.00 0.00 0.00 3.60
2857 3096 4.081087 ACATCCTTCCAGCATACTAAACGT 60.081 41.667 0.00 0.00 0.00 3.99
2858 3097 3.857052 TCCTTCCAGCATACTAAACGTG 58.143 45.455 0.00 0.00 0.00 4.49
2859 3098 3.259876 TCCTTCCAGCATACTAAACGTGT 59.740 43.478 0.00 0.00 0.00 4.49
2860 3099 4.000988 CCTTCCAGCATACTAAACGTGTT 58.999 43.478 0.00 0.00 0.00 3.32
2861 3100 4.454504 CCTTCCAGCATACTAAACGTGTTT 59.545 41.667 3.21 3.21 36.63 2.83
2862 3101 5.048991 CCTTCCAGCATACTAAACGTGTTTT 60.049 40.000 2.97 0.00 34.23 2.43
2863 3102 6.148150 CCTTCCAGCATACTAAACGTGTTTTA 59.852 38.462 2.97 0.00 34.23 1.52
2864 3103 6.470557 TCCAGCATACTAAACGTGTTTTAC 57.529 37.500 2.97 0.00 34.23 2.01
2878 3117 5.687828 CGTGTTTTACGCTTTAATTACCCA 58.312 37.500 0.00 0.00 46.92 4.51
2879 3118 6.316319 CGTGTTTTACGCTTTAATTACCCAT 58.684 36.000 0.00 0.00 46.92 4.00
2880 3119 6.466730 CGTGTTTTACGCTTTAATTACCCATC 59.533 38.462 0.00 0.00 46.92 3.51
2881 3120 7.306953 GTGTTTTACGCTTTAATTACCCATCA 58.693 34.615 0.00 0.00 0.00 3.07
2882 3121 7.971722 GTGTTTTACGCTTTAATTACCCATCAT 59.028 33.333 0.00 0.00 0.00 2.45
2883 3122 9.175312 TGTTTTACGCTTTAATTACCCATCATA 57.825 29.630 0.00 0.00 0.00 2.15
2884 3123 9.442033 GTTTTACGCTTTAATTACCCATCATAC 57.558 33.333 0.00 0.00 0.00 2.39
2885 3124 7.733402 TTACGCTTTAATTACCCATCATACC 57.267 36.000 0.00 0.00 0.00 2.73
2886 3125 5.686753 ACGCTTTAATTACCCATCATACCA 58.313 37.500 0.00 0.00 0.00 3.25
2887 3126 6.303839 ACGCTTTAATTACCCATCATACCAT 58.696 36.000 0.00 0.00 0.00 3.55
2888 3127 6.775629 ACGCTTTAATTACCCATCATACCATT 59.224 34.615 0.00 0.00 0.00 3.16
2889 3128 7.940137 ACGCTTTAATTACCCATCATACCATTA 59.060 33.333 0.00 0.00 0.00 1.90
2890 3129 8.234546 CGCTTTAATTACCCATCATACCATTAC 58.765 37.037 0.00 0.00 0.00 1.89
2891 3130 8.234546 GCTTTAATTACCCATCATACCATTACG 58.765 37.037 0.00 0.00 0.00 3.18
2892 3131 9.280174 CTTTAATTACCCATCATACCATTACGT 57.720 33.333 0.00 0.00 0.00 3.57
2893 3132 9.629878 TTTAATTACCCATCATACCATTACGTT 57.370 29.630 0.00 0.00 0.00 3.99
2896 3135 9.802039 AATTACCCATCATACCATTACGTTAAT 57.198 29.630 0.00 0.00 0.00 1.40
2897 3136 9.802039 ATTACCCATCATACCATTACGTTAATT 57.198 29.630 0.00 0.00 0.00 1.40
2900 3139 9.802039 ACCCATCATACCATTACGTTAATTAAT 57.198 29.630 0.31 0.00 0.00 1.40
2935 3174 6.598753 CCATTGGGTTAACATCTACTAACG 57.401 41.667 8.10 0.00 0.00 3.18
2936 3175 5.007332 CCATTGGGTTAACATCTACTAACGC 59.993 44.000 8.10 0.00 39.88 4.84
2937 3176 5.410355 TTGGGTTAACATCTACTAACGCT 57.590 39.130 8.10 0.00 40.04 5.07
2938 3177 6.528537 TTGGGTTAACATCTACTAACGCTA 57.471 37.500 8.10 1.41 40.04 4.26
2939 3178 6.720112 TGGGTTAACATCTACTAACGCTAT 57.280 37.500 8.10 0.00 40.04 2.97
2940 3179 6.742109 TGGGTTAACATCTACTAACGCTATC 58.258 40.000 8.10 0.00 40.04 2.08
2951 3190 1.448985 AACGCTATCAACCACGCAAT 58.551 45.000 0.00 0.00 0.00 3.56
2962 3201 0.881118 CCACGCAATAAGCCACAGTT 59.119 50.000 0.00 0.00 41.38 3.16
2963 3202 1.269448 CCACGCAATAAGCCACAGTTT 59.731 47.619 0.00 0.00 41.38 2.66
2964 3203 2.486203 CCACGCAATAAGCCACAGTTTA 59.514 45.455 0.00 0.00 41.38 2.01
2965 3204 3.128589 CCACGCAATAAGCCACAGTTTAT 59.871 43.478 0.00 0.00 41.38 1.40
2966 3205 4.342772 CACGCAATAAGCCACAGTTTATC 58.657 43.478 0.00 0.00 41.38 1.75
2967 3206 3.063452 ACGCAATAAGCCACAGTTTATCG 59.937 43.478 0.00 0.00 41.38 2.92
3000 3245 2.502213 AAAAAGAAAGGAAACCGCCG 57.498 45.000 0.00 0.00 0.00 6.46
3001 3246 0.031585 AAAAGAAAGGAAACCGCCGC 59.968 50.000 0.00 0.00 0.00 6.53
3002 3247 0.822121 AAAGAAAGGAAACCGCCGCT 60.822 50.000 0.00 0.00 0.00 5.52
3076 3325 3.707640 CTCCTCCTCCTCCTCGCGT 62.708 68.421 5.77 0.00 0.00 6.01
3153 4295 3.414193 TCGCCCCGTCCTCCTCTA 61.414 66.667 0.00 0.00 0.00 2.43
3158 4300 2.439701 CCGTCCTCCTCTACCGCA 60.440 66.667 0.00 0.00 0.00 5.69
3159 4301 2.772691 CCGTCCTCCTCTACCGCAC 61.773 68.421 0.00 0.00 0.00 5.34
3160 4302 2.799371 GTCCTCCTCTACCGCACG 59.201 66.667 0.00 0.00 0.00 5.34
3161 4303 1.748122 GTCCTCCTCTACCGCACGA 60.748 63.158 0.00 0.00 0.00 4.35
3162 4304 1.748122 TCCTCCTCTACCGCACGAC 60.748 63.158 0.00 0.00 0.00 4.34
3163 4305 1.749638 CCTCCTCTACCGCACGACT 60.750 63.158 0.00 0.00 0.00 4.18
3168 4310 0.247735 CTCTACCGCACGACTTCTCG 60.248 60.000 0.00 0.00 46.06 4.04
3187 6541 3.368501 CCCCTCCTCCTCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
3189 6543 2.443016 CCTCCTCCTCCTCCCACG 60.443 72.222 0.00 0.00 0.00 4.94
3190 6544 3.151022 CTCCTCCTCCTCCCACGC 61.151 72.222 0.00 0.00 0.00 5.34
3193 6547 4.787280 CTCCTCCTCCCACGCCCT 62.787 72.222 0.00 0.00 0.00 5.19
3194 6548 4.332543 TCCTCCTCCCACGCCCTT 62.333 66.667 0.00 0.00 0.00 3.95
3195 6549 3.787001 CCTCCTCCCACGCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
3196 6550 2.685380 CTCCTCCCACGCCCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
3197 6551 3.003173 TCCTCCCACGCCCTTCTG 61.003 66.667 0.00 0.00 0.00 3.02
3198 6552 3.322466 CCTCCCACGCCCTTCTGT 61.322 66.667 0.00 0.00 0.00 3.41
3199 6553 2.266055 CTCCCACGCCCTTCTGTC 59.734 66.667 0.00 0.00 0.00 3.51
3200 6554 3.316573 CTCCCACGCCCTTCTGTCC 62.317 68.421 0.00 0.00 0.00 4.02
3201 6555 3.636231 CCCACGCCCTTCTGTCCA 61.636 66.667 0.00 0.00 0.00 4.02
3202 6556 2.671070 CCACGCCCTTCTGTCCAT 59.329 61.111 0.00 0.00 0.00 3.41
3203 6557 1.622607 CCCACGCCCTTCTGTCCATA 61.623 60.000 0.00 0.00 0.00 2.74
3205 6559 0.806102 CACGCCCTTCTGTCCATACG 60.806 60.000 0.00 0.00 0.00 3.06
3207 6561 1.522569 GCCCTTCTGTCCATACGCT 59.477 57.895 0.00 0.00 0.00 5.07
3210 6564 0.249073 CCTTCTGTCCATACGCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
3211 6565 0.872021 CTTCTGTCCATACGCTCGGC 60.872 60.000 0.00 0.00 0.00 5.54
3212 6566 2.279517 CTGTCCATACGCTCGGCC 60.280 66.667 0.00 0.00 0.00 6.13
3213 6567 2.758327 TGTCCATACGCTCGGCCT 60.758 61.111 0.00 0.00 0.00 5.19
3248 6602 4.699522 GTTGCCGCTCGACCCCTT 62.700 66.667 0.00 0.00 0.00 3.95
3249 6603 4.388499 TTGCCGCTCGACCCCTTC 62.388 66.667 0.00 0.00 0.00 3.46
3253 6607 4.452733 CGCTCGACCCCTTCCCAC 62.453 72.222 0.00 0.00 0.00 4.61
3254 6608 4.097361 GCTCGACCCCTTCCCACC 62.097 72.222 0.00 0.00 0.00 4.61
3255 6609 3.771160 CTCGACCCCTTCCCACCG 61.771 72.222 0.00 0.00 0.00 4.94
3263 6617 4.335647 CTTCCCACCGCTGCACCT 62.336 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 268 5.071653 ACCTTTTTCCATGTGGTAAGCAATT 59.928 36.000 0.00 0.00 36.34 2.32
387 394 9.769093 GACGTACAATATTTAAAGCACATCTTT 57.231 29.630 0.00 0.00 46.17 2.52
388 395 9.162764 AGACGTACAATATTTAAAGCACATCTT 57.837 29.630 0.00 0.00 36.34 2.40
392 399 9.426837 ACTTAGACGTACAATATTTAAAGCACA 57.573 29.630 0.00 0.00 0.00 4.57
426 433 9.893634 TTGGACGAATCTTAGGTAAAATCAATA 57.106 29.630 0.00 0.00 0.00 1.90
431 438 6.177610 TGCTTGGACGAATCTTAGGTAAAAT 58.822 36.000 0.00 0.00 0.00 1.82
508 516 7.720957 TGTCTAGATGTGCCTTATTTATTGCAT 59.279 33.333 0.00 0.00 35.96 3.96
517 525 6.364568 TGCATATGTCTAGATGTGCCTTAT 57.635 37.500 11.24 0.00 39.13 1.73
520 528 4.904895 ATGCATATGTCTAGATGTGCCT 57.095 40.909 11.24 1.07 39.13 4.75
535 543 9.066892 GGTCTCAATCCAAATTTACTATGCATA 57.933 33.333 6.20 6.20 0.00 3.14
537 545 7.118723 AGGTCTCAATCCAAATTTACTATGCA 58.881 34.615 0.00 0.00 0.00 3.96
538 546 7.573968 AGGTCTCAATCCAAATTTACTATGC 57.426 36.000 0.00 0.00 0.00 3.14
552 560 4.099573 TCCGTCTTGGAATAGGTCTCAATC 59.900 45.833 0.00 0.00 46.38 2.67
605 613 9.590451 CCAAATCTAATACACGGACTAAGTAAA 57.410 33.333 0.00 0.00 0.00 2.01
606 614 8.752187 ACCAAATCTAATACACGGACTAAGTAA 58.248 33.333 0.00 0.00 0.00 2.24
607 615 8.297470 ACCAAATCTAATACACGGACTAAGTA 57.703 34.615 0.00 0.00 0.00 2.24
608 616 7.093640 TGACCAAATCTAATACACGGACTAAGT 60.094 37.037 0.00 0.00 0.00 2.24
609 617 7.262772 TGACCAAATCTAATACACGGACTAAG 58.737 38.462 0.00 0.00 0.00 2.18
610 618 7.172868 TGACCAAATCTAATACACGGACTAA 57.827 36.000 0.00 0.00 0.00 2.24
611 619 6.778834 TGACCAAATCTAATACACGGACTA 57.221 37.500 0.00 0.00 0.00 2.59
612 620 5.670792 TGACCAAATCTAATACACGGACT 57.329 39.130 0.00 0.00 0.00 3.85
613 621 6.370718 ACTTTGACCAAATCTAATACACGGAC 59.629 38.462 0.00 0.00 0.00 4.79
614 622 6.469410 ACTTTGACCAAATCTAATACACGGA 58.531 36.000 0.00 0.00 0.00 4.69
615 623 6.370442 TGACTTTGACCAAATCTAATACACGG 59.630 38.462 0.00 0.00 0.00 4.94
616 624 7.359262 TGACTTTGACCAAATCTAATACACG 57.641 36.000 0.00 0.00 0.00 4.49
617 625 7.750903 GCTTGACTTTGACCAAATCTAATACAC 59.249 37.037 0.00 0.00 0.00 2.90
618 626 7.665559 AGCTTGACTTTGACCAAATCTAATACA 59.334 33.333 0.00 0.00 0.00 2.29
619 627 8.045176 AGCTTGACTTTGACCAAATCTAATAC 57.955 34.615 0.00 0.00 0.00 1.89
620 628 8.635765 AAGCTTGACTTTGACCAAATCTAATA 57.364 30.769 0.00 0.00 33.71 0.98
621 629 7.530426 AAGCTTGACTTTGACCAAATCTAAT 57.470 32.000 0.00 0.00 33.71 1.73
622 630 6.959639 AAGCTTGACTTTGACCAAATCTAA 57.040 33.333 0.00 0.00 33.71 2.10
623 631 6.959639 AAAGCTTGACTTTGACCAAATCTA 57.040 33.333 0.00 0.00 47.00 1.98
624 632 5.859205 AAAGCTTGACTTTGACCAAATCT 57.141 34.783 0.00 0.00 47.00 2.40
635 643 6.919721 TGTCAAAGTTTACAAAGCTTGACTT 58.080 32.000 19.48 3.36 39.29 3.01
636 644 6.509418 TGTCAAAGTTTACAAAGCTTGACT 57.491 33.333 19.48 0.00 39.29 3.41
637 645 7.575332 TTTGTCAAAGTTTACAAAGCTTGAC 57.425 32.000 0.00 15.49 39.88 3.18
773 781 9.832445 ACTTTGTAGAGTTTGATCAAGTTTCTA 57.168 29.630 8.41 13.14 0.00 2.10
774 782 8.738645 ACTTTGTAGAGTTTGATCAAGTTTCT 57.261 30.769 8.41 14.03 0.00 2.52
775 783 9.788960 AAACTTTGTAGAGTTTGATCAAGTTTC 57.211 29.630 8.41 7.84 45.46 2.78
816 824 8.407457 TCGTTTTTACTTACTCTGCATATCAG 57.593 34.615 0.00 0.00 44.21 2.90
817 825 8.766000 TTCGTTTTTACTTACTCTGCATATCA 57.234 30.769 0.00 0.00 0.00 2.15
818 826 9.084164 TCTTCGTTTTTACTTACTCTGCATATC 57.916 33.333 0.00 0.00 0.00 1.63
819 827 8.997621 TCTTCGTTTTTACTTACTCTGCATAT 57.002 30.769 0.00 0.00 0.00 1.78
820 828 8.301720 TCTCTTCGTTTTTACTTACTCTGCATA 58.698 33.333 0.00 0.00 0.00 3.14
821 829 7.152645 TCTCTTCGTTTTTACTTACTCTGCAT 58.847 34.615 0.00 0.00 0.00 3.96
822 830 6.509656 TCTCTTCGTTTTTACTTACTCTGCA 58.490 36.000 0.00 0.00 0.00 4.41
823 831 6.641723 ACTCTCTTCGTTTTTACTTACTCTGC 59.358 38.462 0.00 0.00 0.00 4.26
824 832 9.843334 ATACTCTCTTCGTTTTTACTTACTCTG 57.157 33.333 0.00 0.00 0.00 3.35
825 833 9.843334 CATACTCTCTTCGTTTTTACTTACTCT 57.157 33.333 0.00 0.00 0.00 3.24
826 834 9.074443 CCATACTCTCTTCGTTTTTACTTACTC 57.926 37.037 0.00 0.00 0.00 2.59
827 835 8.033626 CCCATACTCTCTTCGTTTTTACTTACT 58.966 37.037 0.00 0.00 0.00 2.24
828 836 7.277319 CCCCATACTCTCTTCGTTTTTACTTAC 59.723 40.741 0.00 0.00 0.00 2.34
829 837 7.325694 CCCCATACTCTCTTCGTTTTTACTTA 58.674 38.462 0.00 0.00 0.00 2.24
830 838 6.171213 CCCCATACTCTCTTCGTTTTTACTT 58.829 40.000 0.00 0.00 0.00 2.24
831 839 5.731591 CCCCATACTCTCTTCGTTTTTACT 58.268 41.667 0.00 0.00 0.00 2.24
832 840 4.331992 GCCCCATACTCTCTTCGTTTTTAC 59.668 45.833 0.00 0.00 0.00 2.01
833 841 4.510571 GCCCCATACTCTCTTCGTTTTTA 58.489 43.478 0.00 0.00 0.00 1.52
834 842 3.344515 GCCCCATACTCTCTTCGTTTTT 58.655 45.455 0.00 0.00 0.00 1.94
835 843 2.355818 GGCCCCATACTCTCTTCGTTTT 60.356 50.000 0.00 0.00 0.00 2.43
836 844 1.209747 GGCCCCATACTCTCTTCGTTT 59.790 52.381 0.00 0.00 0.00 3.60
837 845 0.831307 GGCCCCATACTCTCTTCGTT 59.169 55.000 0.00 0.00 0.00 3.85
838 846 0.032017 AGGCCCCATACTCTCTTCGT 60.032 55.000 0.00 0.00 0.00 3.85
839 847 1.123928 AAGGCCCCATACTCTCTTCG 58.876 55.000 0.00 0.00 0.00 3.79
840 848 3.282885 CAAAAGGCCCCATACTCTCTTC 58.717 50.000 0.00 0.00 0.00 2.87
841 849 2.649816 ACAAAAGGCCCCATACTCTCTT 59.350 45.455 0.00 0.00 0.00 2.85
842 850 2.239907 GACAAAAGGCCCCATACTCTCT 59.760 50.000 0.00 0.00 0.00 3.10
843 851 2.644676 GACAAAAGGCCCCATACTCTC 58.355 52.381 0.00 0.00 0.00 3.20
844 852 1.285078 GGACAAAAGGCCCCATACTCT 59.715 52.381 0.00 0.00 0.00 3.24
845 853 1.285078 AGGACAAAAGGCCCCATACTC 59.715 52.381 0.00 0.00 0.00 2.59
846 854 1.285078 GAGGACAAAAGGCCCCATACT 59.715 52.381 0.00 0.00 0.00 2.12
847 855 1.685180 GGAGGACAAAAGGCCCCATAC 60.685 57.143 0.00 0.00 0.00 2.39
848 856 0.629058 GGAGGACAAAAGGCCCCATA 59.371 55.000 0.00 0.00 0.00 2.74
849 857 1.388133 GGAGGACAAAAGGCCCCAT 59.612 57.895 0.00 0.00 0.00 4.00
850 858 2.851045 GGAGGACAAAAGGCCCCA 59.149 61.111 0.00 0.00 0.00 4.96
851 859 2.361230 CGGAGGACAAAAGGCCCC 60.361 66.667 0.00 0.00 0.00 5.80
852 860 1.377333 CTCGGAGGACAAAAGGCCC 60.377 63.158 0.00 0.00 0.00 5.80
853 861 0.250770 AACTCGGAGGACAAAAGGCC 60.251 55.000 10.23 0.00 0.00 5.19
854 862 1.266989 CAAACTCGGAGGACAAAAGGC 59.733 52.381 10.23 0.00 0.00 4.35
855 863 2.572290 ACAAACTCGGAGGACAAAAGG 58.428 47.619 10.23 0.00 0.00 3.11
856 864 4.392138 GGATACAAACTCGGAGGACAAAAG 59.608 45.833 10.23 0.00 0.00 2.27
857 865 4.041198 AGGATACAAACTCGGAGGACAAAA 59.959 41.667 10.23 0.00 41.41 2.44
858 866 3.581332 AGGATACAAACTCGGAGGACAAA 59.419 43.478 10.23 0.00 41.41 2.83
859 867 3.170717 AGGATACAAACTCGGAGGACAA 58.829 45.455 10.23 0.00 41.41 3.18
860 868 2.816411 AGGATACAAACTCGGAGGACA 58.184 47.619 10.23 0.00 41.41 4.02
861 869 5.334724 CGTATAGGATACAAACTCGGAGGAC 60.335 48.000 10.23 0.00 41.41 3.85
862 870 4.758674 CGTATAGGATACAAACTCGGAGGA 59.241 45.833 10.23 0.00 41.41 3.71
863 871 4.518211 ACGTATAGGATACAAACTCGGAGG 59.482 45.833 10.23 0.00 41.41 4.30
864 872 5.686159 ACGTATAGGATACAAACTCGGAG 57.314 43.478 2.83 2.83 41.41 4.63
865 873 6.291377 AGTACGTATAGGATACAAACTCGGA 58.709 40.000 0.00 0.00 41.41 4.55
866 874 6.551385 AGTACGTATAGGATACAAACTCGG 57.449 41.667 0.00 0.00 41.41 4.63
867 875 6.144563 TCGAGTACGTATAGGATACAAACTCG 59.855 42.308 26.01 26.01 44.59 4.18
909 917 7.621991 CAAAACGAGATACATATGTTGTCCTC 58.378 38.462 14.77 13.30 39.87 3.71
911 919 6.183360 TGCAAAACGAGATACATATGTTGTCC 60.183 38.462 14.77 6.53 39.87 4.02
912 920 6.682863 GTGCAAAACGAGATACATATGTTGTC 59.317 38.462 14.77 12.53 39.87 3.18
922 930 6.697455 TCAGATATCTGTGCAAAACGAGATAC 59.303 38.462 27.80 0.00 44.12 2.24
953 961 2.987413 TTGCCGCTTGTTTGTATCTG 57.013 45.000 0.00 0.00 0.00 2.90
1060 1068 3.692406 GTCGTCGGGAAGGCCACT 61.692 66.667 5.01 0.00 35.15 4.00
1333 1341 2.173669 CCTCGGCGTACCATGCTTG 61.174 63.158 6.85 0.00 34.57 4.01
1669 1677 3.827898 GTCGAGCTCCACGAGGGG 61.828 72.222 8.47 0.00 40.37 4.79
1679 1687 1.609061 CCACATTGTTGAGGTCGAGCT 60.609 52.381 18.67 18.67 0.00 4.09
1780 1788 0.655626 GTGTCTTCGTCGACGTCGTT 60.656 55.000 34.40 0.00 40.80 3.85
1781 1789 1.083144 GTGTCTTCGTCGACGTCGT 60.083 57.895 34.40 0.00 40.80 4.34
1782 1790 1.791283 GGTGTCTTCGTCGACGTCG 60.791 63.158 34.40 31.30 40.80 5.12
1783 1791 1.791283 CGGTGTCTTCGTCGACGTC 60.791 63.158 34.40 22.73 40.80 4.34
1784 1792 2.167808 CTCGGTGTCTTCGTCGACGT 62.168 60.000 34.40 0.00 40.80 4.34
1785 1793 1.509370 CTCGGTGTCTTCGTCGACG 60.509 63.158 31.30 31.30 36.71 5.12
1786 1794 1.154263 CCTCGGTGTCTTCGTCGAC 60.154 63.158 5.18 5.18 34.52 4.20
1787 1795 1.598962 ACCTCGGTGTCTTCGTCGA 60.599 57.895 0.00 0.00 0.00 4.20
1830 1838 2.490217 CGGTACCAGCAGACGGAG 59.510 66.667 13.54 0.00 0.00 4.63
1943 1951 1.955778 TCGTGTAAGGGAAGTCGAACA 59.044 47.619 0.00 0.00 0.00 3.18
1986 1994 1.898574 CAGGTGTTGGGTGGTGAGC 60.899 63.158 0.00 0.00 0.00 4.26
2148 2162 2.509336 CCGATGTCGCCACCACTC 60.509 66.667 0.00 0.00 38.18 3.51
2149 2163 4.082523 CCCGATGTCGCCACCACT 62.083 66.667 0.00 0.00 38.18 4.00
2294 2515 2.090760 ACAAATCATGCATACGTGGCA 58.909 42.857 17.28 17.28 46.66 4.92
2295 2516 2.097304 TCACAAATCATGCATACGTGGC 59.903 45.455 0.00 2.08 33.32 5.01
2296 2517 4.556942 ATCACAAATCATGCATACGTGG 57.443 40.909 0.00 0.00 33.32 4.94
2297 2518 7.578852 AGAATATCACAAATCATGCATACGTG 58.421 34.615 0.00 2.93 0.00 4.49
2298 2519 7.734924 AGAATATCACAAATCATGCATACGT 57.265 32.000 0.00 0.00 0.00 3.57
2299 2520 9.110617 GAAAGAATATCACAAATCATGCATACG 57.889 33.333 0.00 0.00 0.00 3.06
2300 2521 9.403110 GGAAAGAATATCACAAATCATGCATAC 57.597 33.333 0.00 0.00 0.00 2.39
2486 2716 1.672356 CGGTCCCAAGCAGAACCTG 60.672 63.158 0.00 0.00 34.12 4.00
2570 2800 2.103042 GCAACTCGGCTGCGATCTT 61.103 57.895 0.00 0.00 0.00 2.40
2616 2855 2.046892 TCGAGCAAGCCTTCCTGC 60.047 61.111 0.00 0.00 0.00 4.85
2672 2911 4.330074 GTCATGTCCTTATCAGTTCCGTTG 59.670 45.833 0.00 0.00 0.00 4.10
2680 2919 8.272545 TCAAAATTCAGTCATGTCCTTATCAG 57.727 34.615 0.00 0.00 0.00 2.90
2681 2920 8.634335 TTCAAAATTCAGTCATGTCCTTATCA 57.366 30.769 0.00 0.00 0.00 2.15
2687 2926 4.488879 GCCTTCAAAATTCAGTCATGTCC 58.511 43.478 0.00 0.00 0.00 4.02
2734 2973 8.319057 AGATGAAGTGGTATGAGGTAACAATA 57.681 34.615 0.00 0.00 41.41 1.90
2742 2981 4.502259 GGCAGTAGATGAAGTGGTATGAGG 60.502 50.000 0.00 0.00 0.00 3.86
2745 2984 4.122776 GTGGCAGTAGATGAAGTGGTATG 58.877 47.826 0.00 0.00 0.00 2.39
2764 3003 4.698575 GTCCTCTCTTGCCTTTATAGTGG 58.301 47.826 0.00 0.00 0.00 4.00
2765 3004 4.098044 TCGTCCTCTCTTGCCTTTATAGTG 59.902 45.833 0.00 0.00 0.00 2.74
2766 3005 4.279145 TCGTCCTCTCTTGCCTTTATAGT 58.721 43.478 0.00 0.00 0.00 2.12
2767 3006 4.920640 TCGTCCTCTCTTGCCTTTATAG 57.079 45.455 0.00 0.00 0.00 1.31
2768 3007 4.954202 TCTTCGTCCTCTCTTGCCTTTATA 59.046 41.667 0.00 0.00 0.00 0.98
2769 3008 3.769844 TCTTCGTCCTCTCTTGCCTTTAT 59.230 43.478 0.00 0.00 0.00 1.40
2770 3009 3.162666 TCTTCGTCCTCTCTTGCCTTTA 58.837 45.455 0.00 0.00 0.00 1.85
2771 3010 1.971357 TCTTCGTCCTCTCTTGCCTTT 59.029 47.619 0.00 0.00 0.00 3.11
2772 3011 1.633774 TCTTCGTCCTCTCTTGCCTT 58.366 50.000 0.00 0.00 0.00 4.35
2773 3012 1.273886 GTTCTTCGTCCTCTCTTGCCT 59.726 52.381 0.00 0.00 0.00 4.75
2774 3013 1.673329 GGTTCTTCGTCCTCTCTTGCC 60.673 57.143 0.00 0.00 0.00 4.52
2775 3014 1.000955 TGGTTCTTCGTCCTCTCTTGC 59.999 52.381 0.00 0.00 0.00 4.01
2776 3015 2.558795 TCTGGTTCTTCGTCCTCTCTTG 59.441 50.000 0.00 0.00 0.00 3.02
2777 3016 2.877866 TCTGGTTCTTCGTCCTCTCTT 58.122 47.619 0.00 0.00 0.00 2.85
2778 3017 2.588464 TCTGGTTCTTCGTCCTCTCT 57.412 50.000 0.00 0.00 0.00 3.10
2779 3018 2.755655 TGATCTGGTTCTTCGTCCTCTC 59.244 50.000 0.00 0.00 0.00 3.20
2780 3019 2.808919 TGATCTGGTTCTTCGTCCTCT 58.191 47.619 0.00 0.00 0.00 3.69
2781 3020 3.491792 GGATGATCTGGTTCTTCGTCCTC 60.492 52.174 0.00 0.00 40.77 3.71
2782 3021 2.432510 GGATGATCTGGTTCTTCGTCCT 59.567 50.000 0.00 0.00 40.77 3.85
2783 3022 2.432510 AGGATGATCTGGTTCTTCGTCC 59.567 50.000 2.81 2.81 43.14 4.79
2784 3023 3.810310 AGGATGATCTGGTTCTTCGTC 57.190 47.619 0.00 0.00 0.00 4.20
2785 3024 4.282195 GGATAGGATGATCTGGTTCTTCGT 59.718 45.833 0.00 0.00 0.00 3.85
2786 3025 4.281941 TGGATAGGATGATCTGGTTCTTCG 59.718 45.833 0.00 0.00 0.00 3.79
2787 3026 5.815233 TGGATAGGATGATCTGGTTCTTC 57.185 43.478 0.00 0.00 0.00 2.87
2788 3027 5.848369 TGATGGATAGGATGATCTGGTTCTT 59.152 40.000 0.00 0.00 0.00 2.52
2789 3028 5.409712 TGATGGATAGGATGATCTGGTTCT 58.590 41.667 0.00 0.00 0.00 3.01
2790 3029 5.752036 TGATGGATAGGATGATCTGGTTC 57.248 43.478 0.00 0.00 0.00 3.62
2791 3030 6.520021 TTTGATGGATAGGATGATCTGGTT 57.480 37.500 0.00 0.00 0.00 3.67
2792 3031 6.302269 GTTTTGATGGATAGGATGATCTGGT 58.698 40.000 0.00 0.00 0.00 4.00
2793 3032 5.709164 GGTTTTGATGGATAGGATGATCTGG 59.291 44.000 0.00 0.00 0.00 3.86
2794 3033 6.430308 CAGGTTTTGATGGATAGGATGATCTG 59.570 42.308 0.00 0.00 0.00 2.90
2795 3034 6.540995 CAGGTTTTGATGGATAGGATGATCT 58.459 40.000 0.00 0.00 0.00 2.75
2796 3035 5.182760 GCAGGTTTTGATGGATAGGATGATC 59.817 44.000 0.00 0.00 0.00 2.92
2797 3036 5.075493 GCAGGTTTTGATGGATAGGATGAT 58.925 41.667 0.00 0.00 0.00 2.45
2798 3037 4.079844 TGCAGGTTTTGATGGATAGGATGA 60.080 41.667 0.00 0.00 0.00 2.92
2799 3038 4.209538 TGCAGGTTTTGATGGATAGGATG 58.790 43.478 0.00 0.00 0.00 3.51
2800 3039 4.524802 TGCAGGTTTTGATGGATAGGAT 57.475 40.909 0.00 0.00 0.00 3.24
2801 3040 4.314522 TTGCAGGTTTTGATGGATAGGA 57.685 40.909 0.00 0.00 0.00 2.94
2802 3041 4.891756 AGATTGCAGGTTTTGATGGATAGG 59.108 41.667 0.00 0.00 0.00 2.57
2803 3042 5.591472 TCAGATTGCAGGTTTTGATGGATAG 59.409 40.000 0.00 0.00 0.00 2.08
2804 3043 5.508567 TCAGATTGCAGGTTTTGATGGATA 58.491 37.500 0.00 0.00 0.00 2.59
2805 3044 4.346730 TCAGATTGCAGGTTTTGATGGAT 58.653 39.130 0.00 0.00 0.00 3.41
2806 3045 3.765381 TCAGATTGCAGGTTTTGATGGA 58.235 40.909 0.00 0.00 0.00 3.41
2807 3046 4.430007 CATCAGATTGCAGGTTTTGATGG 58.570 43.478 14.18 2.88 38.65 3.51
2808 3047 4.081862 ACCATCAGATTGCAGGTTTTGATG 60.082 41.667 14.68 14.68 40.78 3.07
2809 3048 4.091549 ACCATCAGATTGCAGGTTTTGAT 58.908 39.130 0.00 0.00 0.00 2.57
2810 3049 3.499338 ACCATCAGATTGCAGGTTTTGA 58.501 40.909 0.00 0.00 0.00 2.69
2811 3050 3.508793 AGACCATCAGATTGCAGGTTTTG 59.491 43.478 0.00 0.00 31.57 2.44
2812 3051 3.771216 AGACCATCAGATTGCAGGTTTT 58.229 40.909 0.00 0.00 31.57 2.43
2813 3052 3.446442 AGACCATCAGATTGCAGGTTT 57.554 42.857 0.00 0.00 31.57 3.27
2814 3053 3.264193 TGTAGACCATCAGATTGCAGGTT 59.736 43.478 0.00 0.00 31.57 3.50
2815 3054 2.840038 TGTAGACCATCAGATTGCAGGT 59.160 45.455 0.00 0.00 34.76 4.00
2816 3055 3.548745 TGTAGACCATCAGATTGCAGG 57.451 47.619 0.00 0.00 0.00 4.85
2824 3063 7.207454 ATGCTGGAAGGATGTAGACCATCAG 62.207 48.000 4.85 0.00 46.20 2.90
2825 3064 5.432246 ATGCTGGAAGGATGTAGACCATCA 61.432 45.833 4.85 0.00 46.20 3.07
2826 3065 3.072184 ATGCTGGAAGGATGTAGACCATC 59.928 47.826 0.00 0.00 46.20 3.51
2827 3066 2.481441 TGCTGGAAGGATGTAGACCAT 58.519 47.619 0.00 0.00 36.13 3.55
2828 3067 1.951209 TGCTGGAAGGATGTAGACCA 58.049 50.000 0.00 0.00 0.00 4.02
2836 3075 8.441699 AAAACACGTTTAGTATGCTGGAAGGAT 61.442 37.037 0.00 0.00 39.38 3.24
2837 3076 3.259876 ACACGTTTAGTATGCTGGAAGGA 59.740 43.478 0.00 0.00 40.11 3.36
2838 3077 3.596214 ACACGTTTAGTATGCTGGAAGG 58.404 45.455 0.00 0.00 0.00 3.46
2839 3078 5.607119 AAACACGTTTAGTATGCTGGAAG 57.393 39.130 0.00 0.00 0.00 3.46
2840 3079 6.346758 CGTAAAACACGTTTAGTATGCTGGAA 60.347 38.462 0.00 0.00 45.82 3.53
2841 3080 5.118971 CGTAAAACACGTTTAGTATGCTGGA 59.881 40.000 0.00 0.00 45.82 3.86
2842 3081 5.310489 CGTAAAACACGTTTAGTATGCTGG 58.690 41.667 0.00 0.00 45.82 4.85
2856 3095 7.306953 TGATGGGTAATTAAAGCGTAAAACAC 58.693 34.615 0.00 0.00 0.00 3.32
2857 3096 7.450124 TGATGGGTAATTAAAGCGTAAAACA 57.550 32.000 0.00 0.00 0.00 2.83
2858 3097 9.442033 GTATGATGGGTAATTAAAGCGTAAAAC 57.558 33.333 0.00 0.00 0.00 2.43
2859 3098 8.623030 GGTATGATGGGTAATTAAAGCGTAAAA 58.377 33.333 0.00 0.00 0.00 1.52
2860 3099 7.774157 TGGTATGATGGGTAATTAAAGCGTAAA 59.226 33.333 0.00 0.00 0.00 2.01
2861 3100 7.281098 TGGTATGATGGGTAATTAAAGCGTAA 58.719 34.615 0.00 0.00 0.00 3.18
2862 3101 6.828788 TGGTATGATGGGTAATTAAAGCGTA 58.171 36.000 0.00 0.00 0.00 4.42
2863 3102 5.686753 TGGTATGATGGGTAATTAAAGCGT 58.313 37.500 0.00 0.00 0.00 5.07
2864 3103 6.817765 ATGGTATGATGGGTAATTAAAGCG 57.182 37.500 0.00 0.00 0.00 4.68
2865 3104 8.234546 CGTAATGGTATGATGGGTAATTAAAGC 58.765 37.037 0.00 0.00 0.00 3.51
2866 3105 9.280174 ACGTAATGGTATGATGGGTAATTAAAG 57.720 33.333 0.00 0.00 0.00 1.85
2867 3106 9.629878 AACGTAATGGTATGATGGGTAATTAAA 57.370 29.630 0.00 0.00 0.00 1.52
2870 3109 9.802039 ATTAACGTAATGGTATGATGGGTAATT 57.198 29.630 0.00 0.00 0.00 1.40
2871 3110 9.802039 AATTAACGTAATGGTATGATGGGTAAT 57.198 29.630 0.00 0.00 0.00 1.89
2874 3113 9.802039 ATTAATTAACGTAATGGTATGATGGGT 57.198 29.630 0.00 0.00 0.00 4.51
2894 3133 9.842196 ACCCAATGGTATGATGGATAATTAATT 57.158 29.630 5.89 5.89 45.45 1.40
2912 3151 5.007332 GCGTTAGTAGATGTTAACCCAATGG 59.993 44.000 2.48 0.00 37.80 3.16
2913 3152 5.815740 AGCGTTAGTAGATGTTAACCCAATG 59.184 40.000 2.48 0.00 0.00 2.82
2914 3153 5.985911 AGCGTTAGTAGATGTTAACCCAAT 58.014 37.500 2.48 0.00 0.00 3.16
2915 3154 5.410355 AGCGTTAGTAGATGTTAACCCAA 57.590 39.130 2.48 0.00 0.00 4.12
2916 3155 6.321945 TGATAGCGTTAGTAGATGTTAACCCA 59.678 38.462 2.48 0.00 0.00 4.51
2917 3156 6.742109 TGATAGCGTTAGTAGATGTTAACCC 58.258 40.000 2.48 0.00 0.00 4.11
2918 3157 7.168804 GGTTGATAGCGTTAGTAGATGTTAACC 59.831 40.741 2.48 0.00 0.00 2.85
2919 3158 7.703621 TGGTTGATAGCGTTAGTAGATGTTAAC 59.296 37.037 0.00 0.00 0.00 2.01
2920 3159 7.703621 GTGGTTGATAGCGTTAGTAGATGTTAA 59.296 37.037 0.00 0.00 0.00 2.01
2921 3160 7.198390 GTGGTTGATAGCGTTAGTAGATGTTA 58.802 38.462 0.00 0.00 0.00 2.41
2922 3161 6.040878 GTGGTTGATAGCGTTAGTAGATGTT 58.959 40.000 0.00 0.00 0.00 2.71
2923 3162 5.589192 GTGGTTGATAGCGTTAGTAGATGT 58.411 41.667 0.00 0.00 0.00 3.06
2924 3163 4.675565 CGTGGTTGATAGCGTTAGTAGATG 59.324 45.833 0.00 0.00 0.00 2.90
2925 3164 4.792057 GCGTGGTTGATAGCGTTAGTAGAT 60.792 45.833 0.00 0.00 0.00 1.98
2926 3165 3.488047 GCGTGGTTGATAGCGTTAGTAGA 60.488 47.826 0.00 0.00 0.00 2.59
2927 3166 2.787680 GCGTGGTTGATAGCGTTAGTAG 59.212 50.000 0.00 0.00 0.00 2.57
2928 3167 2.164017 TGCGTGGTTGATAGCGTTAGTA 59.836 45.455 0.00 0.00 0.00 1.82
2929 3168 1.067425 TGCGTGGTTGATAGCGTTAGT 60.067 47.619 0.00 0.00 0.00 2.24
2930 3169 1.635844 TGCGTGGTTGATAGCGTTAG 58.364 50.000 0.00 0.00 0.00 2.34
2931 3170 2.081725 TTGCGTGGTTGATAGCGTTA 57.918 45.000 0.00 0.00 0.00 3.18
2932 3171 1.448985 ATTGCGTGGTTGATAGCGTT 58.551 45.000 0.00 0.00 0.00 4.84
2933 3172 2.303163 TATTGCGTGGTTGATAGCGT 57.697 45.000 0.00 0.00 0.00 5.07
2934 3173 2.599848 GCTTATTGCGTGGTTGATAGCG 60.600 50.000 0.00 0.00 0.00 4.26
2935 3174 2.287009 GGCTTATTGCGTGGTTGATAGC 60.287 50.000 0.00 0.00 44.05 2.97
2936 3175 2.942376 TGGCTTATTGCGTGGTTGATAG 59.058 45.455 0.00 0.00 44.05 2.08
2937 3176 2.680841 GTGGCTTATTGCGTGGTTGATA 59.319 45.455 0.00 0.00 44.05 2.15
2938 3177 1.472480 GTGGCTTATTGCGTGGTTGAT 59.528 47.619 0.00 0.00 44.05 2.57
2939 3178 0.878416 GTGGCTTATTGCGTGGTTGA 59.122 50.000 0.00 0.00 44.05 3.18
2940 3179 0.595588 TGTGGCTTATTGCGTGGTTG 59.404 50.000 0.00 0.00 44.05 3.77
2951 3190 3.202906 GGCATCGATAAACTGTGGCTTA 58.797 45.455 0.00 0.00 33.18 3.09
2962 3201 0.753867 TTACTGCGGGGCATCGATAA 59.246 50.000 0.00 0.00 38.13 1.75
2963 3202 0.753867 TTTACTGCGGGGCATCGATA 59.246 50.000 0.00 0.00 38.13 2.92
2964 3203 0.107410 TTTTACTGCGGGGCATCGAT 60.107 50.000 0.00 0.00 38.13 3.59
2965 3204 0.321741 TTTTTACTGCGGGGCATCGA 60.322 50.000 0.00 0.00 38.13 3.59
2966 3205 2.176140 TTTTTACTGCGGGGCATCG 58.824 52.632 0.00 0.00 38.13 3.84
3000 3245 4.500116 GGAGGAGGTCGTGCGAGC 62.500 72.222 14.85 14.85 42.36 5.03
3001 3246 2.752238 AGGAGGAGGTCGTGCGAG 60.752 66.667 0.00 0.00 0.00 5.03
3002 3247 2.750637 GAGGAGGAGGTCGTGCGA 60.751 66.667 0.00 0.00 0.00 5.10
3060 3309 3.213402 GACGCGAGGAGGAGGAGG 61.213 72.222 15.93 0.00 0.00 4.30
3160 4302 2.364448 AGGAGGGGGCGAGAAGTC 60.364 66.667 0.00 0.00 0.00 3.01
3161 4303 2.364448 GAGGAGGGGGCGAGAAGT 60.364 66.667 0.00 0.00 0.00 3.01
3162 4304 3.157949 GGAGGAGGGGGCGAGAAG 61.158 72.222 0.00 0.00 0.00 2.85
3163 4305 3.680920 GAGGAGGAGGGGGCGAGAA 62.681 68.421 0.00 0.00 0.00 2.87
3168 4310 4.890306 GGAGGAGGAGGAGGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
3171 6525 2.041405 GTGGGAGGAGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
3187 6541 1.515954 CGTATGGACAGAAGGGCGT 59.484 57.895 0.00 0.00 0.00 5.68
3189 6543 0.530870 GAGCGTATGGACAGAAGGGC 60.531 60.000 0.00 0.00 0.00 5.19
3190 6544 0.249073 CGAGCGTATGGACAGAAGGG 60.249 60.000 0.00 0.00 0.00 3.95
3193 6547 1.141019 GCCGAGCGTATGGACAGAA 59.859 57.895 0.00 0.00 0.00 3.02
3194 6548 2.782222 GGCCGAGCGTATGGACAGA 61.782 63.158 0.00 0.00 31.69 3.41
3195 6549 2.279517 GGCCGAGCGTATGGACAG 60.280 66.667 0.00 0.00 31.69 3.51
3196 6550 2.758327 AGGCCGAGCGTATGGACA 60.758 61.111 0.00 0.00 34.89 4.02
3197 6551 2.027751 GAGGCCGAGCGTATGGAC 59.972 66.667 0.00 0.00 0.00 4.02
3198 6552 3.592814 CGAGGCCGAGCGTATGGA 61.593 66.667 0.00 0.00 38.22 3.41
3231 6585 4.699522 AAGGGGTCGAGCGGCAAC 62.700 66.667 8.77 0.00 0.00 4.17
3232 6586 4.388499 GAAGGGGTCGAGCGGCAA 62.388 66.667 8.77 0.00 0.00 4.52
3241 6595 4.410400 CAGCGGTGGGAAGGGGTC 62.410 72.222 6.74 0.00 0.00 4.46
3246 6600 4.335647 AGGTGCAGCGGTGGGAAG 62.336 66.667 17.54 0.00 0.00 3.46
3247 6601 4.641645 CAGGTGCAGCGGTGGGAA 62.642 66.667 17.54 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.