Multiple sequence alignment - TraesCS5B01G306900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G306900 chr5B 100.000 2622 0 0 1 2622 490355747 490358368 0.000000e+00 4843.0
1 TraesCS5B01G306900 chr5B 83.333 312 45 4 2262 2572 490296787 490297092 5.530000e-72 281.0
2 TraesCS5B01G306900 chr1A 92.424 1584 105 11 683 2252 29194177 29192595 0.000000e+00 2246.0
3 TraesCS5B01G306900 chrUn 92.786 804 46 6 680 1471 95388505 95389308 0.000000e+00 1153.0
4 TraesCS5B01G306900 chrUn 89.811 687 35 20 1 680 95387742 95388400 0.000000e+00 848.0
5 TraesCS5B01G306900 chrUn 91.604 536 42 3 1723 2255 95389864 95390399 0.000000e+00 737.0
6 TraesCS5B01G306900 chr5D 93.314 688 37 6 2 680 559671126 559670439 0.000000e+00 1007.0
7 TraesCS5B01G306900 chr5D 92.636 679 34 6 680 1354 559668718 559668052 0.000000e+00 963.0
8 TraesCS5B01G306900 chr5D 92.277 505 34 5 1752 2254 559665290 559664789 0.000000e+00 712.0
9 TraesCS5B01G306900 chr5D 90.361 83 8 0 2289 2371 136710705 136710787 2.760000e-20 110.0
10 TraesCS5B01G306900 chr7B 83.272 1082 157 17 750 1820 680123814 680124882 0.000000e+00 974.0
11 TraesCS5B01G306900 chr4D 83.380 1077 139 27 728 1769 278250413 278249342 0.000000e+00 961.0
12 TraesCS5B01G306900 chr4D 81.369 263 38 1 2003 2254 278249048 278248786 1.230000e-48 204.0
13 TraesCS5B01G306900 chr6B 81.488 1183 177 29 720 1876 567601241 567602407 0.000000e+00 933.0
14 TraesCS5B01G306900 chr6B 79.245 265 43 9 2000 2252 567602576 567602840 9.650000e-40 174.0
15 TraesCS5B01G306900 chr3B 82.809 1018 135 31 828 1820 131573677 131574679 0.000000e+00 874.0
16 TraesCS5B01G306900 chr3B 84.474 760 107 11 1086 1838 578621551 578620796 0.000000e+00 739.0
17 TraesCS5B01G306900 chr3B 89.044 429 35 7 257 680 65188614 65188193 2.990000e-144 521.0
18 TraesCS5B01G306900 chr3B 92.400 250 18 1 1 249 65189712 65189463 3.210000e-94 355.0
19 TraesCS5B01G306900 chr2D 83.816 760 112 11 1086 1838 63082895 63082140 0.000000e+00 712.0
20 TraesCS5B01G306900 chr2D 81.369 263 38 1 2003 2254 500490003 500489741 1.230000e-48 204.0
21 TraesCS5B01G306900 chr4B 84.075 697 101 10 1086 1775 476945134 476944441 0.000000e+00 664.0
22 TraesCS5B01G306900 chr4B 86.513 608 75 6 1037 1640 622813897 622814501 0.000000e+00 662.0
23 TraesCS5B01G306900 chr4A 81.316 851 124 24 784 1624 136873592 136874417 0.000000e+00 658.0
24 TraesCS5B01G306900 chr5A 82.461 707 116 6 1076 1775 331865479 331866184 1.720000e-171 612.0
25 TraesCS5B01G306900 chr5A 85.127 316 32 8 2254 2563 516663237 516663543 2.530000e-80 309.0
26 TraesCS5B01G306900 chr5A 85.333 300 38 4 730 1023 331865091 331865390 3.280000e-79 305.0
27 TraesCS5B01G306900 chr5A 100.000 28 0 0 2482 2509 515494512 515494539 5.000000e-03 52.8
28 TraesCS5B01G306900 chr6D 85.593 590 60 15 680 1247 129172389 129171803 1.740000e-166 595.0
29 TraesCS5B01G306900 chr6D 82.562 281 36 2 1991 2260 129170930 129170652 4.360000e-58 235.0
30 TraesCS5B01G306900 chr3A 86.018 329 35 8 702 1023 359580064 359580388 2.500000e-90 342.0
31 TraesCS5B01G306900 chr1B 80.150 267 35 7 2004 2254 10554587 10554851 1.600000e-42 183.0
32 TraesCS5B01G306900 chr2A 83.951 162 25 1 2094 2254 303741341 303741180 1.260000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G306900 chr5B 490355747 490358368 2621 False 4843.000000 4843 100.000000 1 2622 1 chr5B.!!$F2 2621
1 TraesCS5B01G306900 chr1A 29192595 29194177 1582 True 2246.000000 2246 92.424000 683 2252 1 chr1A.!!$R1 1569
2 TraesCS5B01G306900 chrUn 95387742 95390399 2657 False 912.666667 1153 91.400333 1 2255 3 chrUn.!!$F1 2254
3 TraesCS5B01G306900 chr5D 559664789 559671126 6337 True 894.000000 1007 92.742333 2 2254 3 chr5D.!!$R1 2252
4 TraesCS5B01G306900 chr7B 680123814 680124882 1068 False 974.000000 974 83.272000 750 1820 1 chr7B.!!$F1 1070
5 TraesCS5B01G306900 chr4D 278248786 278250413 1627 True 582.500000 961 82.374500 728 2254 2 chr4D.!!$R1 1526
6 TraesCS5B01G306900 chr6B 567601241 567602840 1599 False 553.500000 933 80.366500 720 2252 2 chr6B.!!$F1 1532
7 TraesCS5B01G306900 chr3B 131573677 131574679 1002 False 874.000000 874 82.809000 828 1820 1 chr3B.!!$F1 992
8 TraesCS5B01G306900 chr3B 578620796 578621551 755 True 739.000000 739 84.474000 1086 1838 1 chr3B.!!$R1 752
9 TraesCS5B01G306900 chr3B 65188193 65189712 1519 True 438.000000 521 90.722000 1 680 2 chr3B.!!$R2 679
10 TraesCS5B01G306900 chr2D 63082140 63082895 755 True 712.000000 712 83.816000 1086 1838 1 chr2D.!!$R1 752
11 TraesCS5B01G306900 chr4B 476944441 476945134 693 True 664.000000 664 84.075000 1086 1775 1 chr4B.!!$R1 689
12 TraesCS5B01G306900 chr4B 622813897 622814501 604 False 662.000000 662 86.513000 1037 1640 1 chr4B.!!$F1 603
13 TraesCS5B01G306900 chr4A 136873592 136874417 825 False 658.000000 658 81.316000 784 1624 1 chr4A.!!$F1 840
14 TraesCS5B01G306900 chr5A 331865091 331866184 1093 False 458.500000 612 83.897000 730 1775 2 chr5A.!!$F3 1045
15 TraesCS5B01G306900 chr6D 129170652 129172389 1737 True 415.000000 595 84.077500 680 2260 2 chr6D.!!$R1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.036388 GGACCAGGATGCAGACGAAA 60.036 55.0 0.0 0.0 31.97 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 4912 0.108472 CCACATCTTGAGCAGCGAGA 60.108 55.0 0.0 0.0 41.24 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.238289 GCTGCAAACATAGCGTGTGT 59.762 50.000 0.00 0.00 41.14 3.72
49 50 0.036388 GGACCAGGATGCAGACGAAA 60.036 55.000 0.00 0.00 31.97 3.46
63 64 1.294138 CGAAAAGGGCGTGGGAGTA 59.706 57.895 0.00 0.00 0.00 2.59
254 257 7.413438 GGTGCACATACTGAAAATTAGTCAGAG 60.413 40.741 20.43 13.60 44.44 3.35
275 1119 7.436376 TCAGAGAGTATGAGCATTGAAATAACG 59.564 37.037 0.00 0.00 0.00 3.18
276 1120 7.436376 CAGAGAGTATGAGCATTGAAATAACGA 59.564 37.037 0.00 0.00 0.00 3.85
310 1154 1.545582 ACATTGTAGTGGCCAACATGC 59.454 47.619 7.24 0.17 0.00 4.06
326 1170 2.436646 GCGGTAGCAGCACACCAT 60.437 61.111 14.73 0.00 44.35 3.55
334 1178 1.208358 CAGCACACCATGAACGCTG 59.792 57.895 10.54 10.54 43.55 5.18
337 1181 1.230635 GCACACCATGAACGCTGACT 61.231 55.000 0.00 0.00 0.00 3.41
390 1234 3.531538 ACGATTTCGACACATGGCTAAT 58.468 40.909 7.01 0.00 43.02 1.73
659 1511 6.577103 TGATTAGTTTGTGTGCCATTTTTCA 58.423 32.000 0.00 0.00 0.00 2.69
660 1512 7.215789 TGATTAGTTTGTGTGCCATTTTTCAT 58.784 30.769 0.00 0.00 0.00 2.57
819 3393 6.824305 ATACCAGGACAATGTTTGAGAAAG 57.176 37.500 0.00 0.00 0.00 2.62
948 3524 3.265791 AGAATGAGTTTGTGATCTCCGC 58.734 45.455 0.00 0.00 0.00 5.54
998 3582 4.397420 TGTGGAACATTTGAGCACTATGT 58.603 39.130 0.00 0.00 45.67 2.29
1034 3629 2.858745 TGCACTTAAACAGTTCCTCCC 58.141 47.619 0.00 0.00 30.92 4.30
1035 3630 2.441750 TGCACTTAAACAGTTCCTCCCT 59.558 45.455 0.00 0.00 30.92 4.20
1163 3810 1.668419 GCTCCCTGCGAAACATGTAT 58.332 50.000 0.00 0.00 0.00 2.29
1164 3811 1.599542 GCTCCCTGCGAAACATGTATC 59.400 52.381 0.00 0.00 0.00 2.24
1182 3833 0.663688 TCGAAGCGATGGACTAGAGC 59.336 55.000 0.00 0.00 0.00 4.09
1230 3885 1.083489 TTGCGCTACCAAAAGGATCG 58.917 50.000 9.73 0.00 0.00 3.69
1233 3888 2.004583 CGCTACCAAAAGGATCGTGA 57.995 50.000 0.00 0.00 0.00 4.35
1432 4654 1.749638 GCTGGCAGCAGATTCAGCT 60.750 57.895 33.33 0.00 46.29 4.24
1471 4694 3.039134 CACCACTTTGGCCGAACC 58.961 61.111 0.00 0.00 42.67 3.62
1507 4731 4.129380 CCATTTCGCAAGGATCAGATGTA 58.871 43.478 0.00 0.00 38.47 2.29
1735 5334 3.257375 ACATGAAGAACACATGCAGCAAT 59.743 39.130 0.00 0.00 45.95 3.56
1743 5342 2.304092 CACATGCAGCAATCCACCTAT 58.696 47.619 0.00 0.00 0.00 2.57
1907 7465 5.833667 TGTGTGGGTATGGTCAAAAACATTA 59.166 36.000 0.00 0.00 0.00 1.90
1911 7469 8.744652 TGTGGGTATGGTCAAAAACATTATTAG 58.255 33.333 0.00 0.00 0.00 1.73
1951 7511 1.934589 TATATGCTCGTGTGTGTGGC 58.065 50.000 0.00 0.00 0.00 5.01
1958 7519 2.177580 CGTGTGTGTGGCCGAACTT 61.178 57.895 8.89 0.00 0.00 2.66
1959 7520 1.355210 GTGTGTGTGGCCGAACTTG 59.645 57.895 8.89 0.00 0.00 3.16
1981 7542 3.618351 AGAAATTCAGCTCAGATGGTGG 58.382 45.455 0.00 0.00 36.25 4.61
2017 7923 1.672356 GTCAGCGTGCCCATGTTCT 60.672 57.895 0.00 0.00 0.00 3.01
2115 8032 2.700897 GACATGGGATGCTACTGTAGGT 59.299 50.000 16.09 3.28 0.00 3.08
2121 8038 7.237679 ACATGGGATGCTACTGTAGGTAAATAT 59.762 37.037 16.09 0.00 0.00 1.28
2122 8039 7.004555 TGGGATGCTACTGTAGGTAAATATG 57.995 40.000 16.09 0.00 0.00 1.78
2137 8054 4.513406 AAATATGGAATACGGTGTGGGT 57.487 40.909 0.00 0.00 0.00 4.51
2154 8071 2.092646 TGGGTGTTACAGTTGTGAGCTT 60.093 45.455 0.00 0.00 0.00 3.74
2192 8110 0.601046 CGTCTCTGCACCAGCTTGAA 60.601 55.000 0.00 0.00 42.74 2.69
2210 8128 4.649088 TGAATCGATTACTGACGACCAT 57.351 40.909 11.38 0.00 41.17 3.55
2244 8162 2.347490 GAGCTCGGCCTCCAAACA 59.653 61.111 0.00 0.00 0.00 2.83
2256 8174 2.351738 CCTCCAAACAGCATTTTCGGTC 60.352 50.000 0.00 0.00 0.00 4.79
2260 8178 3.490761 CCAAACAGCATTTTCGGTCTTGT 60.491 43.478 0.00 0.00 0.00 3.16
2261 8179 4.261405 CCAAACAGCATTTTCGGTCTTGTA 60.261 41.667 0.00 0.00 0.00 2.41
2262 8180 4.749245 AACAGCATTTTCGGTCTTGTAG 57.251 40.909 0.00 0.00 0.00 2.74
2263 8181 3.740115 ACAGCATTTTCGGTCTTGTAGT 58.260 40.909 0.00 0.00 0.00 2.73
2264 8182 3.498397 ACAGCATTTTCGGTCTTGTAGTG 59.502 43.478 0.00 0.00 0.00 2.74
2265 8183 3.745975 CAGCATTTTCGGTCTTGTAGTGA 59.254 43.478 0.00 0.00 0.00 3.41
2266 8184 3.746492 AGCATTTTCGGTCTTGTAGTGAC 59.254 43.478 0.00 0.00 0.00 3.67
2267 8185 3.746492 GCATTTTCGGTCTTGTAGTGACT 59.254 43.478 0.00 0.00 35.04 3.41
2268 8186 4.927425 GCATTTTCGGTCTTGTAGTGACTA 59.073 41.667 0.00 0.00 35.04 2.59
2269 8187 5.407387 GCATTTTCGGTCTTGTAGTGACTAA 59.593 40.000 0.00 0.00 35.04 2.24
2270 8188 6.073440 GCATTTTCGGTCTTGTAGTGACTAAA 60.073 38.462 0.00 0.00 35.04 1.85
2271 8189 7.519328 GCATTTTCGGTCTTGTAGTGACTAAAA 60.519 37.037 0.00 0.00 35.73 1.52
2272 8190 7.846644 TTTTCGGTCTTGTAGTGACTAAAAA 57.153 32.000 0.00 0.00 32.34 1.94
2273 8191 6.833342 TTCGGTCTTGTAGTGACTAAAAAC 57.167 37.500 0.00 0.00 35.04 2.43
2274 8192 5.291971 TCGGTCTTGTAGTGACTAAAAACC 58.708 41.667 12.82 12.82 35.04 3.27
2275 8193 4.450080 CGGTCTTGTAGTGACTAAAAACCC 59.550 45.833 15.22 9.28 35.04 4.11
2276 8194 5.618236 GGTCTTGTAGTGACTAAAAACCCT 58.382 41.667 12.22 0.00 35.04 4.34
2277 8195 6.060136 GGTCTTGTAGTGACTAAAAACCCTT 58.940 40.000 12.22 0.00 35.04 3.95
2278 8196 7.219322 GGTCTTGTAGTGACTAAAAACCCTTA 58.781 38.462 12.22 0.00 35.04 2.69
2279 8197 7.716560 GGTCTTGTAGTGACTAAAAACCCTTAA 59.283 37.037 12.22 0.00 35.04 1.85
2280 8198 9.112725 GTCTTGTAGTGACTAAAAACCCTTAAA 57.887 33.333 0.00 0.00 0.00 1.52
2281 8199 9.683870 TCTTGTAGTGACTAAAAACCCTTAAAA 57.316 29.630 0.00 0.00 0.00 1.52
2308 8226 7.873719 TTTATCTTTCTTGTGTCACTTTGGA 57.126 32.000 4.27 0.00 0.00 3.53
2309 8227 7.496529 TTATCTTTCTTGTGTCACTTTGGAG 57.503 36.000 4.27 0.00 0.00 3.86
2310 8228 3.627577 TCTTTCTTGTGTCACTTTGGAGC 59.372 43.478 4.27 0.00 0.00 4.70
2311 8229 1.967319 TCTTGTGTCACTTTGGAGCC 58.033 50.000 4.27 0.00 0.00 4.70
2312 8230 0.588252 CTTGTGTCACTTTGGAGCCG 59.412 55.000 4.27 0.00 0.00 5.52
2313 8231 0.107410 TTGTGTCACTTTGGAGCCGT 60.107 50.000 4.27 0.00 0.00 5.68
2314 8232 0.813610 TGTGTCACTTTGGAGCCGTG 60.814 55.000 4.27 0.00 0.00 4.94
2315 8233 1.891919 TGTCACTTTGGAGCCGTGC 60.892 57.895 0.00 0.00 0.00 5.34
2316 8234 1.891919 GTCACTTTGGAGCCGTGCA 60.892 57.895 0.00 0.00 0.00 4.57
2317 8235 1.153066 TCACTTTGGAGCCGTGCAA 60.153 52.632 0.00 0.00 31.08 4.08
2318 8236 1.165907 TCACTTTGGAGCCGTGCAAG 61.166 55.000 0.00 0.00 35.16 4.01
2319 8237 1.148273 ACTTTGGAGCCGTGCAAGA 59.852 52.632 0.00 0.00 35.16 3.02
2320 8238 0.250901 ACTTTGGAGCCGTGCAAGAT 60.251 50.000 0.00 0.00 35.16 2.40
2321 8239 0.169672 CTTTGGAGCCGTGCAAGATG 59.830 55.000 0.00 0.00 35.16 2.90
2322 8240 0.250684 TTTGGAGCCGTGCAAGATGA 60.251 50.000 0.00 0.00 35.16 2.92
2323 8241 0.250684 TTGGAGCCGTGCAAGATGAA 60.251 50.000 0.00 0.00 29.35 2.57
2324 8242 0.250684 TGGAGCCGTGCAAGATGAAA 60.251 50.000 0.00 0.00 0.00 2.69
2325 8243 0.449388 GGAGCCGTGCAAGATGAAAG 59.551 55.000 0.00 0.00 0.00 2.62
2326 8244 1.160137 GAGCCGTGCAAGATGAAAGT 58.840 50.000 0.00 0.00 0.00 2.66
2327 8245 1.537202 GAGCCGTGCAAGATGAAAGTT 59.463 47.619 0.00 0.00 0.00 2.66
2328 8246 1.956477 AGCCGTGCAAGATGAAAGTTT 59.044 42.857 0.00 0.00 0.00 2.66
2329 8247 2.030805 AGCCGTGCAAGATGAAAGTTTC 60.031 45.455 8.75 8.75 0.00 2.78
2330 8248 2.287547 GCCGTGCAAGATGAAAGTTTCA 60.288 45.455 20.14 20.14 45.01 2.69
2343 8261 6.768029 TGAAAGTTTCATGCATAGTTTTGC 57.232 33.333 14.35 0.00 37.69 3.68
2355 8273 6.187125 GCATAGTTTTGCATGAGAGAAAGA 57.813 37.500 0.00 0.00 42.31 2.52
2356 8274 6.615088 GCATAGTTTTGCATGAGAGAAAGAA 58.385 36.000 0.00 0.00 42.31 2.52
2357 8275 6.746364 GCATAGTTTTGCATGAGAGAAAGAAG 59.254 38.462 0.00 0.00 42.31 2.85
2358 8276 5.118642 AGTTTTGCATGAGAGAAAGAAGC 57.881 39.130 0.00 0.00 0.00 3.86
2359 8277 3.818961 TTTGCATGAGAGAAAGAAGCG 57.181 42.857 0.00 0.00 0.00 4.68
2360 8278 2.749280 TGCATGAGAGAAAGAAGCGA 57.251 45.000 0.00 0.00 0.00 4.93
2361 8279 3.257469 TGCATGAGAGAAAGAAGCGAT 57.743 42.857 0.00 0.00 0.00 4.58
2362 8280 2.934553 TGCATGAGAGAAAGAAGCGATG 59.065 45.455 0.00 0.00 0.00 3.84
2363 8281 3.193263 GCATGAGAGAAAGAAGCGATGA 58.807 45.455 0.00 0.00 0.00 2.92
2364 8282 3.620374 GCATGAGAGAAAGAAGCGATGAA 59.380 43.478 0.00 0.00 0.00 2.57
2365 8283 4.272991 GCATGAGAGAAAGAAGCGATGAAT 59.727 41.667 0.00 0.00 0.00 2.57
2366 8284 5.558653 GCATGAGAGAAAGAAGCGATGAATC 60.559 44.000 0.00 0.00 0.00 2.52
2367 8285 5.336150 TGAGAGAAAGAAGCGATGAATCT 57.664 39.130 0.00 0.00 0.00 2.40
2368 8286 5.728471 TGAGAGAAAGAAGCGATGAATCTT 58.272 37.500 0.00 0.00 35.00 2.40
2369 8287 5.809562 TGAGAGAAAGAAGCGATGAATCTTC 59.190 40.000 0.00 0.00 39.08 2.87
2376 8294 6.808008 AGAAGCGATGAATCTTCTTTTCAA 57.192 33.333 0.00 0.00 44.64 2.69
2377 8295 6.606768 AGAAGCGATGAATCTTCTTTTCAAC 58.393 36.000 0.00 0.00 44.64 3.18
2378 8296 6.429385 AGAAGCGATGAATCTTCTTTTCAACT 59.571 34.615 0.00 0.00 44.64 3.16
2379 8297 6.175712 AGCGATGAATCTTCTTTTCAACTC 57.824 37.500 0.00 0.00 36.72 3.01
2380 8298 5.936956 AGCGATGAATCTTCTTTTCAACTCT 59.063 36.000 0.00 0.00 36.72 3.24
2381 8299 6.020372 GCGATGAATCTTCTTTTCAACTCTG 58.980 40.000 0.00 0.00 36.72 3.35
2382 8300 6.348050 GCGATGAATCTTCTTTTCAACTCTGT 60.348 38.462 0.00 0.00 36.72 3.41
2383 8301 7.232994 CGATGAATCTTCTTTTCAACTCTGTC 58.767 38.462 0.00 0.00 36.72 3.51
2384 8302 7.117523 CGATGAATCTTCTTTTCAACTCTGTCT 59.882 37.037 0.00 0.00 36.72 3.41
2385 8303 7.721286 TGAATCTTCTTTTCAACTCTGTCTC 57.279 36.000 0.00 0.00 30.44 3.36
2386 8304 6.708054 TGAATCTTCTTTTCAACTCTGTCTCC 59.292 38.462 0.00 0.00 30.44 3.71
2387 8305 4.962155 TCTTCTTTTCAACTCTGTCTCCC 58.038 43.478 0.00 0.00 0.00 4.30
2388 8306 3.771577 TCTTTTCAACTCTGTCTCCCC 57.228 47.619 0.00 0.00 0.00 4.81
2389 8307 2.372172 TCTTTTCAACTCTGTCTCCCCC 59.628 50.000 0.00 0.00 0.00 5.40
2390 8308 1.814429 TTTCAACTCTGTCTCCCCCA 58.186 50.000 0.00 0.00 0.00 4.96
2391 8309 1.056660 TTCAACTCTGTCTCCCCCAC 58.943 55.000 0.00 0.00 0.00 4.61
2392 8310 0.191064 TCAACTCTGTCTCCCCCACT 59.809 55.000 0.00 0.00 0.00 4.00
2393 8311 1.059913 CAACTCTGTCTCCCCCACTT 58.940 55.000 0.00 0.00 0.00 3.16
2394 8312 1.002544 CAACTCTGTCTCCCCCACTTC 59.997 57.143 0.00 0.00 0.00 3.01
2395 8313 0.191064 ACTCTGTCTCCCCCACTTCA 59.809 55.000 0.00 0.00 0.00 3.02
2396 8314 0.901124 CTCTGTCTCCCCCACTTCAG 59.099 60.000 0.00 0.00 0.00 3.02
2397 8315 0.191064 TCTGTCTCCCCCACTTCAGT 59.809 55.000 0.00 0.00 0.00 3.41
2398 8316 0.610687 CTGTCTCCCCCACTTCAGTC 59.389 60.000 0.00 0.00 0.00 3.51
2399 8317 1.185618 TGTCTCCCCCACTTCAGTCG 61.186 60.000 0.00 0.00 0.00 4.18
2400 8318 1.155390 TCTCCCCCACTTCAGTCGT 59.845 57.895 0.00 0.00 0.00 4.34
2401 8319 0.471211 TCTCCCCCACTTCAGTCGTT 60.471 55.000 0.00 0.00 0.00 3.85
2402 8320 0.396811 CTCCCCCACTTCAGTCGTTT 59.603 55.000 0.00 0.00 0.00 3.60
2403 8321 0.107831 TCCCCCACTTCAGTCGTTTG 59.892 55.000 0.00 0.00 0.00 2.93
2404 8322 0.179029 CCCCCACTTCAGTCGTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
2405 8323 0.944386 CCCCACTTCAGTCGTTTGTG 59.056 55.000 0.00 0.00 0.00 3.33
2406 8324 1.474320 CCCCACTTCAGTCGTTTGTGA 60.474 52.381 0.00 0.00 0.00 3.58
2407 8325 2.494059 CCCACTTCAGTCGTTTGTGAT 58.506 47.619 0.00 0.00 0.00 3.06
2408 8326 3.556213 CCCCACTTCAGTCGTTTGTGATA 60.556 47.826 0.00 0.00 0.00 2.15
2409 8327 4.062293 CCCACTTCAGTCGTTTGTGATAA 58.938 43.478 0.00 0.00 0.00 1.75
2410 8328 4.513692 CCCACTTCAGTCGTTTGTGATAAA 59.486 41.667 0.00 0.00 0.00 1.40
2411 8329 5.008217 CCCACTTCAGTCGTTTGTGATAAAA 59.992 40.000 0.00 0.00 0.00 1.52
2412 8330 5.907391 CCACTTCAGTCGTTTGTGATAAAAC 59.093 40.000 0.00 0.00 36.81 2.43
2413 8331 5.907391 CACTTCAGTCGTTTGTGATAAAACC 59.093 40.000 0.00 0.00 36.83 3.27
2414 8332 5.820947 ACTTCAGTCGTTTGTGATAAAACCT 59.179 36.000 0.00 0.00 36.83 3.50
2415 8333 6.987992 ACTTCAGTCGTTTGTGATAAAACCTA 59.012 34.615 0.00 0.00 36.83 3.08
2416 8334 7.660208 ACTTCAGTCGTTTGTGATAAAACCTAT 59.340 33.333 0.00 0.00 36.83 2.57
2417 8335 7.591006 TCAGTCGTTTGTGATAAAACCTATC 57.409 36.000 0.00 0.00 36.83 2.08
2418 8336 7.383687 TCAGTCGTTTGTGATAAAACCTATCT 58.616 34.615 0.00 0.00 36.83 1.98
2419 8337 8.525316 TCAGTCGTTTGTGATAAAACCTATCTA 58.475 33.333 0.00 0.00 36.83 1.98
2420 8338 9.146984 CAGTCGTTTGTGATAAAACCTATCTAA 57.853 33.333 0.00 0.00 36.83 2.10
2421 8339 9.715121 AGTCGTTTGTGATAAAACCTATCTAAA 57.285 29.630 0.00 0.00 36.83 1.85
2424 8342 9.632969 CGTTTGTGATAAAACCTATCTAAATCG 57.367 33.333 0.00 0.00 36.83 3.34
2430 8348 9.477484 TGATAAAACCTATCTAAATCGAAGAGC 57.523 33.333 0.00 0.00 43.63 4.09
2431 8349 8.834749 ATAAAACCTATCTAAATCGAAGAGCC 57.165 34.615 0.00 0.00 43.63 4.70
2432 8350 5.871396 AACCTATCTAAATCGAAGAGCCA 57.129 39.130 0.00 0.00 43.63 4.75
2433 8351 5.461032 ACCTATCTAAATCGAAGAGCCAG 57.539 43.478 0.00 0.00 43.63 4.85
2434 8352 4.241681 CCTATCTAAATCGAAGAGCCAGC 58.758 47.826 0.00 0.00 43.63 4.85
2435 8353 2.604046 TCTAAATCGAAGAGCCAGCC 57.396 50.000 0.00 0.00 43.63 4.85
2436 8354 1.139058 TCTAAATCGAAGAGCCAGCCC 59.861 52.381 0.00 0.00 43.63 5.19
2437 8355 0.180406 TAAATCGAAGAGCCAGCCCC 59.820 55.000 0.00 0.00 43.63 5.80
2438 8356 1.566298 AAATCGAAGAGCCAGCCCCT 61.566 55.000 0.00 0.00 43.63 4.79
2439 8357 0.691078 AATCGAAGAGCCAGCCCCTA 60.691 55.000 0.00 0.00 43.63 3.53
2440 8358 1.118356 ATCGAAGAGCCAGCCCCTAG 61.118 60.000 0.00 0.00 43.63 3.02
2441 8359 2.508436 GAAGAGCCAGCCCCTAGC 59.492 66.667 0.00 0.00 44.25 3.42
2454 8372 4.957684 GCCCCTAGCTTTCTAATACTGA 57.042 45.455 0.00 0.00 38.99 3.41
2455 8373 5.291905 GCCCCTAGCTTTCTAATACTGAA 57.708 43.478 0.00 0.00 38.99 3.02
2456 8374 5.681639 GCCCCTAGCTTTCTAATACTGAAA 58.318 41.667 0.00 0.00 38.99 2.69
2457 8375 5.527951 GCCCCTAGCTTTCTAATACTGAAAC 59.472 44.000 0.00 0.00 38.99 2.78
2458 8376 6.056236 CCCCTAGCTTTCTAATACTGAAACC 58.944 44.000 0.00 0.00 31.21 3.27
2459 8377 6.352737 CCCCTAGCTTTCTAATACTGAAACCA 60.353 42.308 0.00 0.00 31.21 3.67
2460 8378 6.763610 CCCTAGCTTTCTAATACTGAAACCAG 59.236 42.308 0.00 0.00 37.67 4.00
2461 8379 6.258947 CCTAGCTTTCTAATACTGAAACCAGC 59.741 42.308 0.00 0.00 35.09 4.85
2462 8380 4.631813 AGCTTTCTAATACTGAAACCAGCG 59.368 41.667 0.00 0.00 35.09 5.18
2463 8381 4.392138 GCTTTCTAATACTGAAACCAGCGT 59.608 41.667 0.00 0.00 35.09 5.07
2464 8382 5.579511 GCTTTCTAATACTGAAACCAGCGTA 59.420 40.000 0.00 0.00 35.09 4.42
2465 8383 6.455246 GCTTTCTAATACTGAAACCAGCGTAC 60.455 42.308 0.00 0.00 35.09 3.67
2466 8384 5.002464 TCTAATACTGAAACCAGCGTACC 57.998 43.478 0.00 0.00 35.09 3.34
2467 8385 3.688694 AATACTGAAACCAGCGTACCA 57.311 42.857 0.00 0.00 35.09 3.25
2468 8386 3.906720 ATACTGAAACCAGCGTACCAT 57.093 42.857 0.00 0.00 35.09 3.55
2469 8387 2.094762 ACTGAAACCAGCGTACCATC 57.905 50.000 0.00 0.00 35.09 3.51
2470 8388 0.999406 CTGAAACCAGCGTACCATCG 59.001 55.000 0.00 0.00 0.00 3.84
2471 8389 0.604073 TGAAACCAGCGTACCATCGA 59.396 50.000 0.00 0.00 0.00 3.59
2472 8390 1.206132 TGAAACCAGCGTACCATCGAT 59.794 47.619 0.00 0.00 0.00 3.59
2473 8391 1.593006 GAAACCAGCGTACCATCGATG 59.407 52.381 18.76 18.76 44.96 3.84
2474 8392 0.535335 AACCAGCGTACCATCGATGT 59.465 50.000 23.27 13.87 44.09 3.06
2475 8393 1.395635 ACCAGCGTACCATCGATGTA 58.604 50.000 23.27 12.93 44.09 2.29
2476 8394 1.961394 ACCAGCGTACCATCGATGTAT 59.039 47.619 23.27 13.73 44.09 2.29
2477 8395 2.364324 ACCAGCGTACCATCGATGTATT 59.636 45.455 23.27 10.19 44.09 1.89
2478 8396 2.731451 CCAGCGTACCATCGATGTATTG 59.269 50.000 23.27 10.85 44.09 1.90
2479 8397 2.731451 CAGCGTACCATCGATGTATTGG 59.269 50.000 23.27 12.36 41.34 3.16
2480 8398 1.459592 GCGTACCATCGATGTATTGGC 59.540 52.381 23.27 15.31 33.66 4.52
2481 8399 2.866460 GCGTACCATCGATGTATTGGCT 60.866 50.000 23.27 3.94 33.66 4.75
2482 8400 3.390135 CGTACCATCGATGTATTGGCTT 58.610 45.455 23.27 0.00 33.66 4.35
2483 8401 4.552355 CGTACCATCGATGTATTGGCTTA 58.448 43.478 23.27 0.00 33.66 3.09
2484 8402 5.168569 CGTACCATCGATGTATTGGCTTAT 58.831 41.667 23.27 0.00 33.66 1.73
2485 8403 6.327154 CGTACCATCGATGTATTGGCTTATA 58.673 40.000 23.27 0.00 33.66 0.98
2486 8404 6.472486 CGTACCATCGATGTATTGGCTTATAG 59.528 42.308 23.27 6.31 33.66 1.31
2487 8405 6.605471 ACCATCGATGTATTGGCTTATAGA 57.395 37.500 23.27 0.00 33.66 1.98
2488 8406 6.634805 ACCATCGATGTATTGGCTTATAGAG 58.365 40.000 23.27 5.28 33.66 2.43
2489 8407 6.437477 ACCATCGATGTATTGGCTTATAGAGA 59.563 38.462 23.27 0.00 33.66 3.10
2490 8408 6.977502 CCATCGATGTATTGGCTTATAGAGAG 59.022 42.308 23.27 0.00 0.00 3.20
2491 8409 5.955488 TCGATGTATTGGCTTATAGAGAGC 58.045 41.667 0.00 0.00 39.41 4.09
2503 8421 6.940739 GCTTATAGAGAGCCCATTAGATTGA 58.059 40.000 0.00 0.00 34.06 2.57
2504 8422 7.563906 GCTTATAGAGAGCCCATTAGATTGAT 58.436 38.462 0.00 0.00 34.06 2.57
2505 8423 7.710475 GCTTATAGAGAGCCCATTAGATTGATC 59.290 40.741 0.00 0.00 34.06 2.92
2506 8424 8.907829 TTATAGAGAGCCCATTAGATTGATCT 57.092 34.615 0.00 0.00 40.86 2.75
2507 8425 7.811482 ATAGAGAGCCCATTAGATTGATCTT 57.189 36.000 0.00 0.00 38.32 2.40
2508 8426 8.907829 ATAGAGAGCCCATTAGATTGATCTTA 57.092 34.615 0.00 0.00 38.32 2.10
2509 8427 7.623999 AGAGAGCCCATTAGATTGATCTTAA 57.376 36.000 0.00 0.00 38.32 1.85
2510 8428 7.678837 AGAGAGCCCATTAGATTGATCTTAAG 58.321 38.462 0.00 0.00 38.32 1.85
2511 8429 6.237154 AGAGCCCATTAGATTGATCTTAAGC 58.763 40.000 0.00 0.00 38.32 3.09
2512 8430 6.044171 AGAGCCCATTAGATTGATCTTAAGCT 59.956 38.462 0.00 1.50 38.32 3.74
2513 8431 6.002704 AGCCCATTAGATTGATCTTAAGCTG 58.997 40.000 0.00 0.00 38.32 4.24
2514 8432 5.182760 GCCCATTAGATTGATCTTAAGCTGG 59.817 44.000 0.00 0.00 38.32 4.85
2515 8433 6.302269 CCCATTAGATTGATCTTAAGCTGGT 58.698 40.000 0.00 0.00 38.32 4.00
2516 8434 6.774656 CCCATTAGATTGATCTTAAGCTGGTT 59.225 38.462 0.00 0.00 38.32 3.67
2517 8435 7.040823 CCCATTAGATTGATCTTAAGCTGGTTC 60.041 40.741 0.00 0.00 38.32 3.62
2518 8436 7.040823 CCATTAGATTGATCTTAAGCTGGTTCC 60.041 40.741 0.00 0.00 38.32 3.62
2519 8437 4.786425 AGATTGATCTTAAGCTGGTTCCC 58.214 43.478 0.00 0.00 31.97 3.97
2520 8438 4.476479 AGATTGATCTTAAGCTGGTTCCCT 59.524 41.667 0.00 0.00 31.97 4.20
2521 8439 4.657814 TTGATCTTAAGCTGGTTCCCTT 57.342 40.909 0.00 0.00 0.00 3.95
2522 8440 3.955471 TGATCTTAAGCTGGTTCCCTTG 58.045 45.455 0.00 0.00 0.00 3.61
2523 8441 3.587061 TGATCTTAAGCTGGTTCCCTTGA 59.413 43.478 0.00 0.00 0.00 3.02
2524 8442 4.042809 TGATCTTAAGCTGGTTCCCTTGAA 59.957 41.667 0.00 0.00 0.00 2.69
2535 8453 4.664150 GTTCCCTTGAACCAAACATTCA 57.336 40.909 0.00 0.00 44.20 2.57
2536 8454 5.213891 GTTCCCTTGAACCAAACATTCAT 57.786 39.130 0.00 0.00 44.20 2.57
2537 8455 4.870123 TCCCTTGAACCAAACATTCATG 57.130 40.909 0.00 0.00 36.02 3.07
2538 8456 4.478203 TCCCTTGAACCAAACATTCATGA 58.522 39.130 0.00 0.00 36.02 3.07
2539 8457 5.085920 TCCCTTGAACCAAACATTCATGAT 58.914 37.500 0.00 0.00 36.02 2.45
2540 8458 5.543405 TCCCTTGAACCAAACATTCATGATT 59.457 36.000 0.00 0.00 36.02 2.57
2541 8459 5.870978 CCCTTGAACCAAACATTCATGATTC 59.129 40.000 0.00 0.00 36.02 2.52
2542 8460 6.457355 CCTTGAACCAAACATTCATGATTCA 58.543 36.000 0.00 0.00 36.02 2.57
2543 8461 7.101054 CCTTGAACCAAACATTCATGATTCAT 58.899 34.615 0.00 0.00 36.02 2.57
2544 8462 7.277098 CCTTGAACCAAACATTCATGATTCATC 59.723 37.037 0.00 0.00 36.02 2.92
2545 8463 7.470935 TGAACCAAACATTCATGATTCATCT 57.529 32.000 0.00 0.00 31.11 2.90
2546 8464 7.541162 TGAACCAAACATTCATGATTCATCTC 58.459 34.615 0.00 0.00 31.11 2.75
2547 8465 7.395206 TGAACCAAACATTCATGATTCATCTCT 59.605 33.333 0.00 0.00 31.11 3.10
2548 8466 8.812513 AACCAAACATTCATGATTCATCTCTA 57.187 30.769 0.00 0.00 0.00 2.43
2549 8467 8.447924 ACCAAACATTCATGATTCATCTCTAG 57.552 34.615 0.00 0.00 0.00 2.43
2550 8468 7.501559 ACCAAACATTCATGATTCATCTCTAGG 59.498 37.037 0.00 0.00 0.00 3.02
2551 8469 7.718314 CCAAACATTCATGATTCATCTCTAGGA 59.282 37.037 0.00 0.00 0.00 2.94
2552 8470 8.775527 CAAACATTCATGATTCATCTCTAGGAG 58.224 37.037 0.00 0.00 0.00 3.69
2553 8471 6.465948 ACATTCATGATTCATCTCTAGGAGC 58.534 40.000 0.00 0.00 0.00 4.70
2554 8472 6.042897 ACATTCATGATTCATCTCTAGGAGCA 59.957 38.462 0.00 0.00 0.00 4.26
2555 8473 5.465532 TCATGATTCATCTCTAGGAGCAC 57.534 43.478 0.00 0.00 0.00 4.40
2556 8474 4.897670 TCATGATTCATCTCTAGGAGCACA 59.102 41.667 0.00 0.00 0.00 4.57
2557 8475 5.364735 TCATGATTCATCTCTAGGAGCACAA 59.635 40.000 0.00 0.00 0.00 3.33
2558 8476 5.273674 TGATTCATCTCTAGGAGCACAAG 57.726 43.478 0.00 0.00 0.00 3.16
2559 8477 4.958581 TGATTCATCTCTAGGAGCACAAGA 59.041 41.667 0.00 0.00 0.00 3.02
2560 8478 5.601729 TGATTCATCTCTAGGAGCACAAGAT 59.398 40.000 0.00 0.00 0.00 2.40
2561 8479 6.779539 TGATTCATCTCTAGGAGCACAAGATA 59.220 38.462 0.00 0.00 0.00 1.98
2562 8480 6.398234 TTCATCTCTAGGAGCACAAGATAC 57.602 41.667 0.00 0.00 0.00 2.24
2563 8481 4.517075 TCATCTCTAGGAGCACAAGATACG 59.483 45.833 0.00 0.00 0.00 3.06
2564 8482 2.619177 TCTCTAGGAGCACAAGATACGC 59.381 50.000 0.00 0.00 0.00 4.42
2565 8483 1.681793 TCTAGGAGCACAAGATACGCC 59.318 52.381 0.00 0.00 0.00 5.68
2566 8484 1.409064 CTAGGAGCACAAGATACGCCA 59.591 52.381 0.00 0.00 0.00 5.69
2567 8485 0.613260 AGGAGCACAAGATACGCCAA 59.387 50.000 0.00 0.00 0.00 4.52
2568 8486 1.210478 AGGAGCACAAGATACGCCAAT 59.790 47.619 0.00 0.00 0.00 3.16
2569 8487 2.434336 AGGAGCACAAGATACGCCAATA 59.566 45.455 0.00 0.00 0.00 1.90
2570 8488 2.544267 GGAGCACAAGATACGCCAATAC 59.456 50.000 0.00 0.00 0.00 1.89
2571 8489 3.194861 GAGCACAAGATACGCCAATACA 58.805 45.455 0.00 0.00 0.00 2.29
2572 8490 3.198068 AGCACAAGATACGCCAATACAG 58.802 45.455 0.00 0.00 0.00 2.74
2573 8491 2.287915 GCACAAGATACGCCAATACAGG 59.712 50.000 0.00 0.00 0.00 4.00
2574 8492 3.792401 CACAAGATACGCCAATACAGGA 58.208 45.455 0.00 0.00 0.00 3.86
2575 8493 3.555956 CACAAGATACGCCAATACAGGAC 59.444 47.826 0.00 0.00 0.00 3.85
2576 8494 3.196901 ACAAGATACGCCAATACAGGACA 59.803 43.478 0.00 0.00 0.00 4.02
2577 8495 4.141711 ACAAGATACGCCAATACAGGACAT 60.142 41.667 0.00 0.00 0.00 3.06
2578 8496 3.995199 AGATACGCCAATACAGGACATG 58.005 45.455 0.00 0.00 0.00 3.21
2579 8497 3.388024 AGATACGCCAATACAGGACATGT 59.612 43.478 0.00 0.00 46.45 3.21
2589 8507 3.819564 ACAGGACATGTATGCACGTAT 57.180 42.857 0.00 0.00 41.60 3.06
2590 8508 4.929819 ACAGGACATGTATGCACGTATA 57.070 40.909 0.00 0.00 41.60 1.47
2591 8509 5.468540 ACAGGACATGTATGCACGTATAT 57.531 39.130 0.00 0.00 41.60 0.86
2592 8510 6.584185 ACAGGACATGTATGCACGTATATA 57.416 37.500 0.00 0.00 41.60 0.86
2593 8511 7.170393 ACAGGACATGTATGCACGTATATAT 57.830 36.000 0.00 0.00 41.60 0.86
2594 8512 7.611770 ACAGGACATGTATGCACGTATATATT 58.388 34.615 0.00 0.00 41.60 1.28
2595 8513 8.745590 ACAGGACATGTATGCACGTATATATTA 58.254 33.333 0.00 0.00 41.60 0.98
2596 8514 9.020813 CAGGACATGTATGCACGTATATATTAC 57.979 37.037 0.00 0.00 0.00 1.89
2597 8515 8.745590 AGGACATGTATGCACGTATATATTACA 58.254 33.333 0.00 0.00 0.00 2.41
2598 8516 8.804743 GGACATGTATGCACGTATATATTACAC 58.195 37.037 0.00 0.00 0.00 2.90
2599 8517 9.349145 GACATGTATGCACGTATATATTACACA 57.651 33.333 0.00 0.00 0.00 3.72
2600 8518 9.699703 ACATGTATGCACGTATATATTACACAA 57.300 29.630 0.00 0.00 0.00 3.33
2619 8537 7.916914 ACACAATAGTATAACAAACACTCCC 57.083 36.000 0.00 0.00 0.00 4.30
2620 8538 7.686434 ACACAATAGTATAACAAACACTCCCT 58.314 34.615 0.00 0.00 0.00 4.20
2621 8539 8.818860 ACACAATAGTATAACAAACACTCCCTA 58.181 33.333 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.776322 CATCCTGGTCCGCGGCAA 62.776 66.667 23.51 8.53 0.00 4.52
49 50 0.912487 TTGGATACTCCCACGCCCTT 60.912 55.000 0.00 0.00 35.03 3.95
63 64 7.284034 GTCCAACAAGATTGATCTGTATTGGAT 59.716 37.037 23.08 3.09 45.11 3.41
254 257 7.700322 TCTCGTTATTTCAATGCTCATACTC 57.300 36.000 0.00 0.00 0.00 2.59
275 1119 6.975772 CACTACAATGTAGCTTACCTCTTCTC 59.024 42.308 19.38 0.00 0.00 2.87
276 1120 6.127310 CCACTACAATGTAGCTTACCTCTTCT 60.127 42.308 19.38 0.00 0.00 2.85
310 1154 0.673333 TTCATGGTGTGCTGCTACCG 60.673 55.000 17.45 8.07 39.87 4.02
326 1170 7.485418 TTTTTAATCTGTAAGTCAGCGTTCA 57.515 32.000 0.00 0.00 43.32 3.18
353 1197 8.757789 GTCGAAATCGTCATACCATGTTATTTA 58.242 33.333 2.41 0.00 40.80 1.40
410 1254 1.045911 TTTGGTCTGCAAACCCACCC 61.046 55.000 6.77 0.00 38.65 4.61
468 1315 5.278463 GCAGGTGCAGACTCAGAAAATTTTA 60.278 40.000 2.75 0.00 41.59 1.52
472 1319 2.157738 GCAGGTGCAGACTCAGAAAAT 58.842 47.619 0.00 0.00 41.59 1.82
620 1470 9.725019 ACAAACTAATCATGACTGAATTCACTA 57.275 29.630 3.38 0.00 34.37 2.74
659 1511 3.772025 CACCTTCCCAACTCTGACTCTAT 59.228 47.826 0.00 0.00 0.00 1.98
660 1512 3.165875 CACCTTCCCAACTCTGACTCTA 58.834 50.000 0.00 0.00 0.00 2.43
819 3393 4.216257 ACATTCATACAGTGCTTCACCAAC 59.784 41.667 0.00 0.00 34.49 3.77
948 3524 1.472082 ACTCATCAGCTGTCTCACTCG 59.528 52.381 14.67 0.00 0.00 4.18
1034 3629 9.639601 TCTACAGTAACTGATTGTGAATAACAG 57.360 33.333 0.00 0.00 36.25 3.16
1035 3630 9.639601 CTCTACAGTAACTGATTGTGAATAACA 57.360 33.333 0.00 0.00 34.35 2.41
1163 3810 0.663688 GCTCTAGTCCATCGCTTCGA 59.336 55.000 0.00 0.00 41.13 3.71
1164 3811 0.665835 AGCTCTAGTCCATCGCTTCG 59.334 55.000 0.00 0.00 0.00 3.79
1182 3833 4.321304 CCGGTGGTAGTATATCTCTTGCAG 60.321 50.000 0.00 0.00 0.00 4.41
1230 3885 2.301577 AGAATACTTCAGCGGCTCAC 57.698 50.000 0.00 0.00 0.00 3.51
1432 4654 0.752009 TGTTACCAACGCCAAAGCCA 60.752 50.000 0.00 0.00 34.57 4.75
1437 4659 0.382515 GTGCTTGTTACCAACGCCAA 59.617 50.000 0.00 0.00 0.00 4.52
1456 4679 2.281208 TCGGTTCGGCCAAAGTGG 60.281 61.111 2.24 0.00 41.55 4.00
1471 4694 2.155732 CGAAATGGTGTGTTCAGACTCG 59.844 50.000 0.52 0.00 0.00 4.18
1507 4731 2.579201 CTCGACGGTGCTGGGAAT 59.421 61.111 0.00 0.00 0.00 3.01
1541 4766 0.537653 TCACGACTGGTTGTTGGACA 59.462 50.000 0.00 0.00 34.36 4.02
1614 4843 5.235850 TGTGCTCTTGTGTCCCTAAATTA 57.764 39.130 0.00 0.00 0.00 1.40
1682 4912 0.108472 CCACATCTTGAGCAGCGAGA 60.108 55.000 0.00 0.00 41.24 4.04
1743 5342 7.996644 ACACTAAAATCTAGTTTTTCCAGACCA 59.003 33.333 13.50 0.00 40.40 4.02
1781 7316 4.339247 GTGCCACATAAGCAAATCCATAGT 59.661 41.667 0.00 0.00 43.02 2.12
1924 7483 5.685954 ACACACACGAGCATATATAACGAAG 59.314 40.000 10.70 6.67 0.00 3.79
1926 7485 4.973663 CACACACACGAGCATATATAACGA 59.026 41.667 10.70 0.00 0.00 3.85
1951 7511 3.748048 TGAGCTGAATTTCTCAAGTTCGG 59.252 43.478 0.00 0.00 36.50 4.30
1958 7519 4.259356 CACCATCTGAGCTGAATTTCTCA 58.741 43.478 0.00 6.06 37.70 3.27
1959 7520 3.626670 CCACCATCTGAGCTGAATTTCTC 59.373 47.826 0.00 0.00 0.00 2.87
1981 7542 0.249911 ACAGGCTGTCAAGGACGAAC 60.250 55.000 15.88 0.00 34.95 3.95
2017 7923 2.366590 AGCATCACTCACTCACACAGAA 59.633 45.455 0.00 0.00 0.00 3.02
2115 8032 5.104444 ACACCCACACCGTATTCCATATTTA 60.104 40.000 0.00 0.00 0.00 1.40
2121 8038 0.766131 AACACCCACACCGTATTCCA 59.234 50.000 0.00 0.00 0.00 3.53
2122 8039 2.289569 TGTAACACCCACACCGTATTCC 60.290 50.000 0.00 0.00 0.00 3.01
2137 8054 6.052360 TGTATTCAAGCTCACAACTGTAACA 58.948 36.000 0.00 0.00 0.00 2.41
2154 8071 6.986231 AGAGACGCATTTATGTCATGTATTCA 59.014 34.615 0.00 0.00 37.58 2.57
2183 8101 3.243877 CGTCAGTAATCGATTCAAGCTGG 59.756 47.826 15.25 4.42 0.00 4.85
2192 8110 4.855715 ATCATGGTCGTCAGTAATCGAT 57.144 40.909 0.00 0.00 38.32 3.59
2210 8128 0.390492 CTCCATGCAGCTCGGTATCA 59.610 55.000 0.00 0.00 0.00 2.15
2244 8162 3.746492 GTCACTACAAGACCGAAAATGCT 59.254 43.478 0.00 0.00 0.00 3.79
2282 8200 9.567776 TCCAAAGTGACACAAGAAAGATAAATA 57.432 29.630 8.59 0.00 0.00 1.40
2283 8201 8.463930 TCCAAAGTGACACAAGAAAGATAAAT 57.536 30.769 8.59 0.00 0.00 1.40
2284 8202 7.468631 GCTCCAAAGTGACACAAGAAAGATAAA 60.469 37.037 8.59 0.00 0.00 1.40
2285 8203 6.017109 GCTCCAAAGTGACACAAGAAAGATAA 60.017 38.462 8.59 0.00 0.00 1.75
2286 8204 5.470098 GCTCCAAAGTGACACAAGAAAGATA 59.530 40.000 8.59 0.00 0.00 1.98
2287 8205 4.276926 GCTCCAAAGTGACACAAGAAAGAT 59.723 41.667 8.59 0.00 0.00 2.40
2288 8206 3.627577 GCTCCAAAGTGACACAAGAAAGA 59.372 43.478 8.59 0.00 0.00 2.52
2289 8207 3.243201 GGCTCCAAAGTGACACAAGAAAG 60.243 47.826 8.59 1.01 0.00 2.62
2290 8208 2.687935 GGCTCCAAAGTGACACAAGAAA 59.312 45.455 8.59 0.00 0.00 2.52
2291 8209 2.297701 GGCTCCAAAGTGACACAAGAA 58.702 47.619 8.59 0.00 0.00 2.52
2292 8210 1.810031 CGGCTCCAAAGTGACACAAGA 60.810 52.381 8.59 0.00 0.00 3.02
2293 8211 0.588252 CGGCTCCAAAGTGACACAAG 59.412 55.000 8.59 0.00 0.00 3.16
2294 8212 0.107410 ACGGCTCCAAAGTGACACAA 60.107 50.000 8.59 0.00 0.00 3.33
2295 8213 0.813610 CACGGCTCCAAAGTGACACA 60.814 55.000 8.59 0.00 38.06 3.72
2296 8214 1.941812 CACGGCTCCAAAGTGACAC 59.058 57.895 0.00 0.00 38.06 3.67
2297 8215 1.891919 GCACGGCTCCAAAGTGACA 60.892 57.895 0.00 0.00 38.06 3.58
2298 8216 1.444119 TTGCACGGCTCCAAAGTGAC 61.444 55.000 0.00 0.00 38.06 3.67
2299 8217 1.153066 TTGCACGGCTCCAAAGTGA 60.153 52.632 0.00 0.00 38.06 3.41
2300 8218 1.165907 TCTTGCACGGCTCCAAAGTG 61.166 55.000 0.00 0.00 38.77 3.16
2301 8219 0.250901 ATCTTGCACGGCTCCAAAGT 60.251 50.000 0.00 0.00 0.00 2.66
2302 8220 0.169672 CATCTTGCACGGCTCCAAAG 59.830 55.000 0.00 0.00 0.00 2.77
2303 8221 0.250684 TCATCTTGCACGGCTCCAAA 60.251 50.000 0.00 0.00 0.00 3.28
2304 8222 0.250684 TTCATCTTGCACGGCTCCAA 60.251 50.000 0.00 0.00 0.00 3.53
2305 8223 0.250684 TTTCATCTTGCACGGCTCCA 60.251 50.000 0.00 0.00 0.00 3.86
2306 8224 0.449388 CTTTCATCTTGCACGGCTCC 59.551 55.000 0.00 0.00 0.00 4.70
2307 8225 1.160137 ACTTTCATCTTGCACGGCTC 58.840 50.000 0.00 0.00 0.00 4.70
2308 8226 1.609208 AACTTTCATCTTGCACGGCT 58.391 45.000 0.00 0.00 0.00 5.52
2309 8227 2.287547 TGAAACTTTCATCTTGCACGGC 60.288 45.455 0.00 0.00 34.08 5.68
2310 8228 3.624326 TGAAACTTTCATCTTGCACGG 57.376 42.857 0.00 0.00 34.08 4.94
2320 8238 6.768029 GCAAAACTATGCATGAAACTTTCA 57.232 33.333 10.16 6.67 45.70 2.69
2332 8250 6.187125 TCTTTCTCTCATGCAAAACTATGC 57.813 37.500 0.00 0.00 46.58 3.14
2333 8251 6.746364 GCTTCTTTCTCTCATGCAAAACTATG 59.254 38.462 0.00 0.00 0.00 2.23
2334 8252 6.402983 CGCTTCTTTCTCTCATGCAAAACTAT 60.403 38.462 0.00 0.00 0.00 2.12
2335 8253 5.106948 CGCTTCTTTCTCTCATGCAAAACTA 60.107 40.000 0.00 0.00 0.00 2.24
2336 8254 4.320057 CGCTTCTTTCTCTCATGCAAAACT 60.320 41.667 0.00 0.00 0.00 2.66
2337 8255 3.910767 CGCTTCTTTCTCTCATGCAAAAC 59.089 43.478 0.00 0.00 0.00 2.43
2338 8256 3.814842 TCGCTTCTTTCTCTCATGCAAAA 59.185 39.130 0.00 0.00 0.00 2.44
2339 8257 3.402110 TCGCTTCTTTCTCTCATGCAAA 58.598 40.909 0.00 0.00 0.00 3.68
2340 8258 3.044235 TCGCTTCTTTCTCTCATGCAA 57.956 42.857 0.00 0.00 0.00 4.08
2341 8259 2.749280 TCGCTTCTTTCTCTCATGCA 57.251 45.000 0.00 0.00 0.00 3.96
2342 8260 3.193263 TCATCGCTTCTTTCTCTCATGC 58.807 45.455 0.00 0.00 0.00 4.06
2343 8261 5.754406 AGATTCATCGCTTCTTTCTCTCATG 59.246 40.000 0.00 0.00 0.00 3.07
2344 8262 5.916318 AGATTCATCGCTTCTTTCTCTCAT 58.084 37.500 0.00 0.00 0.00 2.90
2345 8263 5.336150 AGATTCATCGCTTCTTTCTCTCA 57.664 39.130 0.00 0.00 0.00 3.27
2346 8264 6.042143 AGAAGATTCATCGCTTCTTTCTCTC 58.958 40.000 0.00 0.00 46.32 3.20
2347 8265 5.976458 AGAAGATTCATCGCTTCTTTCTCT 58.024 37.500 0.00 0.00 46.32 3.10
2354 8272 6.606768 AGTTGAAAAGAAGATTCATCGCTTC 58.393 36.000 0.00 0.00 40.54 3.86
2355 8273 6.429385 AGAGTTGAAAAGAAGATTCATCGCTT 59.571 34.615 0.00 0.00 34.88 4.68
2356 8274 5.936956 AGAGTTGAAAAGAAGATTCATCGCT 59.063 36.000 0.00 0.00 36.72 4.93
2357 8275 6.020372 CAGAGTTGAAAAGAAGATTCATCGC 58.980 40.000 0.00 0.00 36.72 4.58
2358 8276 7.117523 AGACAGAGTTGAAAAGAAGATTCATCG 59.882 37.037 0.00 0.00 36.72 3.84
2359 8277 8.321650 AGACAGAGTTGAAAAGAAGATTCATC 57.678 34.615 0.00 0.00 36.72 2.92
2360 8278 7.390162 GGAGACAGAGTTGAAAAGAAGATTCAT 59.610 37.037 0.00 0.00 36.72 2.57
2361 8279 6.708054 GGAGACAGAGTTGAAAAGAAGATTCA 59.292 38.462 0.00 0.00 35.11 2.57
2362 8280 6.148645 GGGAGACAGAGTTGAAAAGAAGATTC 59.851 42.308 0.00 0.00 0.00 2.52
2363 8281 6.000840 GGGAGACAGAGTTGAAAAGAAGATT 58.999 40.000 0.00 0.00 0.00 2.40
2364 8282 5.513962 GGGGAGACAGAGTTGAAAAGAAGAT 60.514 44.000 0.00 0.00 0.00 2.40
2365 8283 4.202367 GGGGAGACAGAGTTGAAAAGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
2366 8284 4.068599 GGGGAGACAGAGTTGAAAAGAAG 58.931 47.826 0.00 0.00 0.00 2.85
2367 8285 3.181443 GGGGGAGACAGAGTTGAAAAGAA 60.181 47.826 0.00 0.00 0.00 2.52
2368 8286 2.372172 GGGGGAGACAGAGTTGAAAAGA 59.628 50.000 0.00 0.00 0.00 2.52
2369 8287 2.106511 TGGGGGAGACAGAGTTGAAAAG 59.893 50.000 0.00 0.00 0.00 2.27
2370 8288 2.131854 TGGGGGAGACAGAGTTGAAAA 58.868 47.619 0.00 0.00 0.00 2.29
2371 8289 1.420138 GTGGGGGAGACAGAGTTGAAA 59.580 52.381 0.00 0.00 0.00 2.69
2372 8290 1.056660 GTGGGGGAGACAGAGTTGAA 58.943 55.000 0.00 0.00 0.00 2.69
2373 8291 0.191064 AGTGGGGGAGACAGAGTTGA 59.809 55.000 0.00 0.00 0.00 3.18
2374 8292 1.002544 GAAGTGGGGGAGACAGAGTTG 59.997 57.143 0.00 0.00 0.00 3.16
2375 8293 1.353091 GAAGTGGGGGAGACAGAGTT 58.647 55.000 0.00 0.00 0.00 3.01
2376 8294 0.191064 TGAAGTGGGGGAGACAGAGT 59.809 55.000 0.00 0.00 0.00 3.24
2377 8295 0.901124 CTGAAGTGGGGGAGACAGAG 59.099 60.000 0.00 0.00 0.00 3.35
2378 8296 0.191064 ACTGAAGTGGGGGAGACAGA 59.809 55.000 0.00 0.00 0.00 3.41
2379 8297 0.610687 GACTGAAGTGGGGGAGACAG 59.389 60.000 0.00 0.00 0.00 3.51
2380 8298 1.185618 CGACTGAAGTGGGGGAGACA 61.186 60.000 0.00 0.00 0.00 3.41
2381 8299 1.186267 ACGACTGAAGTGGGGGAGAC 61.186 60.000 0.00 0.00 0.00 3.36
2382 8300 0.471211 AACGACTGAAGTGGGGGAGA 60.471 55.000 0.00 0.00 0.00 3.71
2383 8301 0.396811 AAACGACTGAAGTGGGGGAG 59.603 55.000 0.00 0.00 0.00 4.30
2384 8302 0.107831 CAAACGACTGAAGTGGGGGA 59.892 55.000 0.00 0.00 0.00 4.81
2385 8303 0.179029 ACAAACGACTGAAGTGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
2386 8304 0.944386 CACAAACGACTGAAGTGGGG 59.056 55.000 0.00 0.00 0.00 4.96
2387 8305 1.948104 TCACAAACGACTGAAGTGGG 58.052 50.000 0.00 0.00 0.00 4.61
2388 8306 5.666969 TTTATCACAAACGACTGAAGTGG 57.333 39.130 0.00 0.00 0.00 4.00
2389 8307 5.907391 GGTTTTATCACAAACGACTGAAGTG 59.093 40.000 0.00 0.00 37.50 3.16
2390 8308 5.820947 AGGTTTTATCACAAACGACTGAAGT 59.179 36.000 0.00 0.00 37.50 3.01
2391 8309 6.300354 AGGTTTTATCACAAACGACTGAAG 57.700 37.500 0.00 0.00 37.50 3.02
2392 8310 7.876068 AGATAGGTTTTATCACAAACGACTGAA 59.124 33.333 0.00 0.00 37.50 3.02
2393 8311 7.383687 AGATAGGTTTTATCACAAACGACTGA 58.616 34.615 0.00 0.00 37.50 3.41
2394 8312 7.596749 AGATAGGTTTTATCACAAACGACTG 57.403 36.000 0.00 0.00 37.50 3.51
2395 8313 9.715121 TTTAGATAGGTTTTATCACAAACGACT 57.285 29.630 0.00 0.00 37.50 4.18
2398 8316 9.632969 CGATTTAGATAGGTTTTATCACAAACG 57.367 33.333 0.00 0.00 37.50 3.60
2404 8322 9.477484 GCTCTTCGATTTAGATAGGTTTTATCA 57.523 33.333 0.00 0.00 0.00 2.15
2405 8323 8.927721 GGCTCTTCGATTTAGATAGGTTTTATC 58.072 37.037 0.00 0.00 0.00 1.75
2406 8324 8.429641 TGGCTCTTCGATTTAGATAGGTTTTAT 58.570 33.333 0.00 0.00 0.00 1.40
2407 8325 7.788026 TGGCTCTTCGATTTAGATAGGTTTTA 58.212 34.615 0.00 0.00 0.00 1.52
2408 8326 6.650120 TGGCTCTTCGATTTAGATAGGTTTT 58.350 36.000 0.00 0.00 0.00 2.43
2409 8327 6.235231 TGGCTCTTCGATTTAGATAGGTTT 57.765 37.500 0.00 0.00 0.00 3.27
2410 8328 5.740513 GCTGGCTCTTCGATTTAGATAGGTT 60.741 44.000 0.00 0.00 0.00 3.50
2411 8329 4.262249 GCTGGCTCTTCGATTTAGATAGGT 60.262 45.833 0.00 0.00 0.00 3.08
2412 8330 4.241681 GCTGGCTCTTCGATTTAGATAGG 58.758 47.826 0.00 0.00 0.00 2.57
2413 8331 4.241681 GGCTGGCTCTTCGATTTAGATAG 58.758 47.826 0.00 0.00 0.00 2.08
2414 8332 3.006967 GGGCTGGCTCTTCGATTTAGATA 59.993 47.826 0.00 0.00 0.00 1.98
2415 8333 2.224402 GGGCTGGCTCTTCGATTTAGAT 60.224 50.000 0.00 0.00 0.00 1.98
2416 8334 1.139058 GGGCTGGCTCTTCGATTTAGA 59.861 52.381 0.00 0.00 0.00 2.10
2417 8335 1.587547 GGGCTGGCTCTTCGATTTAG 58.412 55.000 0.00 0.00 0.00 1.85
2418 8336 0.180406 GGGGCTGGCTCTTCGATTTA 59.820 55.000 0.00 0.00 0.00 1.40
2419 8337 1.077429 GGGGCTGGCTCTTCGATTT 60.077 57.895 0.00 0.00 0.00 2.17
2420 8338 0.691078 TAGGGGCTGGCTCTTCGATT 60.691 55.000 9.58 0.00 0.00 3.34
2421 8339 1.075226 TAGGGGCTGGCTCTTCGAT 60.075 57.895 9.58 0.00 0.00 3.59
2422 8340 1.758514 CTAGGGGCTGGCTCTTCGA 60.759 63.158 9.58 0.00 0.00 3.71
2423 8341 2.818132 CTAGGGGCTGGCTCTTCG 59.182 66.667 9.58 0.00 0.00 3.79
2424 8342 2.069430 AGCTAGGGGCTGGCTCTTC 61.069 63.158 9.58 1.72 44.83 2.87
2425 8343 2.041928 AGCTAGGGGCTGGCTCTT 59.958 61.111 9.58 0.00 44.83 2.85
2433 8351 4.957684 TCAGTATTAGAAAGCTAGGGGC 57.042 45.455 0.00 0.00 42.19 5.80
2434 8352 6.056236 GGTTTCAGTATTAGAAAGCTAGGGG 58.944 44.000 9.75 0.00 45.23 4.79
2441 8359 6.035758 GGTACGCTGGTTTCAGTATTAGAAAG 59.964 42.308 0.00 0.00 42.78 2.62
2442 8360 5.870978 GGTACGCTGGTTTCAGTATTAGAAA 59.129 40.000 0.00 0.00 42.78 2.52
2443 8361 5.047164 TGGTACGCTGGTTTCAGTATTAGAA 60.047 40.000 0.00 0.00 42.78 2.10
2444 8362 4.463539 TGGTACGCTGGTTTCAGTATTAGA 59.536 41.667 0.00 0.00 42.78 2.10
2445 8363 4.751060 TGGTACGCTGGTTTCAGTATTAG 58.249 43.478 0.00 0.00 42.78 1.73
2446 8364 4.804868 TGGTACGCTGGTTTCAGTATTA 57.195 40.909 0.00 0.00 42.78 0.98
2447 8365 3.688694 TGGTACGCTGGTTTCAGTATT 57.311 42.857 0.00 0.00 42.78 1.89
2448 8366 3.737047 CGATGGTACGCTGGTTTCAGTAT 60.737 47.826 0.00 0.00 42.78 2.12
2449 8367 2.416296 CGATGGTACGCTGGTTTCAGTA 60.416 50.000 0.00 0.00 42.78 2.74
2450 8368 1.671850 CGATGGTACGCTGGTTTCAGT 60.672 52.381 0.00 0.00 42.78 3.41
2451 8369 0.999406 CGATGGTACGCTGGTTTCAG 59.001 55.000 0.00 0.00 43.64 3.02
2452 8370 0.604073 TCGATGGTACGCTGGTTTCA 59.396 50.000 0.00 0.00 0.00 2.69
2453 8371 1.593006 CATCGATGGTACGCTGGTTTC 59.407 52.381 17.96 0.00 0.00 2.78
2454 8372 1.066430 ACATCGATGGTACGCTGGTTT 60.066 47.619 28.09 0.58 34.43 3.27
2455 8373 0.535335 ACATCGATGGTACGCTGGTT 59.465 50.000 28.09 1.12 34.43 3.67
2456 8374 1.395635 TACATCGATGGTACGCTGGT 58.604 50.000 28.09 7.42 34.43 4.00
2457 8375 2.724977 ATACATCGATGGTACGCTGG 57.275 50.000 28.09 1.14 34.43 4.85
2458 8376 2.731451 CCAATACATCGATGGTACGCTG 59.269 50.000 28.09 15.30 35.88 5.18
2459 8377 2.866460 GCCAATACATCGATGGTACGCT 60.866 50.000 28.09 9.58 36.57 5.07
2460 8378 1.459592 GCCAATACATCGATGGTACGC 59.540 52.381 28.09 17.99 36.57 4.42
2461 8379 3.026630 AGCCAATACATCGATGGTACG 57.973 47.619 28.09 13.94 36.57 3.67
2462 8380 7.544622 TCTATAAGCCAATACATCGATGGTAC 58.455 38.462 28.09 11.72 36.57 3.34
2463 8381 7.614192 TCTCTATAAGCCAATACATCGATGGTA 59.386 37.037 28.09 17.67 36.57 3.25
2464 8382 6.437477 TCTCTATAAGCCAATACATCGATGGT 59.563 38.462 28.09 16.19 36.57 3.55
2465 8383 6.867550 TCTCTATAAGCCAATACATCGATGG 58.132 40.000 28.09 13.76 37.29 3.51
2466 8384 6.475076 GCTCTCTATAAGCCAATACATCGATG 59.525 42.308 23.68 23.68 33.53 3.84
2467 8385 6.568869 GCTCTCTATAAGCCAATACATCGAT 58.431 40.000 0.00 0.00 33.53 3.59
2468 8386 5.955488 GCTCTCTATAAGCCAATACATCGA 58.045 41.667 0.00 0.00 33.53 3.59
2479 8397 6.940739 TCAATCTAATGGGCTCTCTATAAGC 58.059 40.000 0.00 0.00 39.09 3.09
2480 8398 8.980596 AGATCAATCTAATGGGCTCTCTATAAG 58.019 37.037 0.00 0.00 34.85 1.73
2481 8399 8.907829 AGATCAATCTAATGGGCTCTCTATAA 57.092 34.615 0.00 0.00 34.85 0.98
2482 8400 8.907829 AAGATCAATCTAATGGGCTCTCTATA 57.092 34.615 0.00 0.00 35.76 1.31
2483 8401 7.811482 AAGATCAATCTAATGGGCTCTCTAT 57.189 36.000 0.00 0.00 35.76 1.98
2484 8402 8.727100 TTAAGATCAATCTAATGGGCTCTCTA 57.273 34.615 0.00 0.00 35.76 2.43
2485 8403 7.623999 TTAAGATCAATCTAATGGGCTCTCT 57.376 36.000 0.00 0.00 35.76 3.10
2486 8404 6.371271 GCTTAAGATCAATCTAATGGGCTCTC 59.629 42.308 6.67 0.00 35.76 3.20
2487 8405 6.044171 AGCTTAAGATCAATCTAATGGGCTCT 59.956 38.462 6.67 0.00 35.76 4.09
2488 8406 6.149142 CAGCTTAAGATCAATCTAATGGGCTC 59.851 42.308 6.67 0.00 35.76 4.70
2489 8407 6.002704 CAGCTTAAGATCAATCTAATGGGCT 58.997 40.000 6.67 0.00 35.76 5.19
2490 8408 5.182760 CCAGCTTAAGATCAATCTAATGGGC 59.817 44.000 6.67 0.00 35.76 5.36
2491 8409 6.302269 ACCAGCTTAAGATCAATCTAATGGG 58.698 40.000 6.67 0.00 35.76 4.00
2492 8410 7.040823 GGAACCAGCTTAAGATCAATCTAATGG 60.041 40.741 6.67 0.00 35.76 3.16
2493 8411 7.869800 GGAACCAGCTTAAGATCAATCTAATG 58.130 38.462 6.67 0.00 35.76 1.90
2515 8433 4.898265 TCATGAATGTTTGGTTCAAGGGAA 59.102 37.500 0.00 0.00 38.89 3.97
2516 8434 4.478203 TCATGAATGTTTGGTTCAAGGGA 58.522 39.130 0.00 0.00 38.89 4.20
2517 8435 4.870123 TCATGAATGTTTGGTTCAAGGG 57.130 40.909 0.00 0.00 38.89 3.95
2518 8436 6.457355 TGAATCATGAATGTTTGGTTCAAGG 58.543 36.000 0.00 0.00 38.89 3.61
2519 8437 8.033038 AGATGAATCATGAATGTTTGGTTCAAG 58.967 33.333 0.00 0.00 38.89 3.02
2520 8438 7.898918 AGATGAATCATGAATGTTTGGTTCAA 58.101 30.769 0.00 0.00 38.89 2.69
2521 8439 7.395206 AGAGATGAATCATGAATGTTTGGTTCA 59.605 33.333 0.00 2.88 39.65 3.18
2522 8440 7.769220 AGAGATGAATCATGAATGTTTGGTTC 58.231 34.615 0.00 0.00 0.00 3.62
2523 8441 7.713734 AGAGATGAATCATGAATGTTTGGTT 57.286 32.000 0.00 0.00 0.00 3.67
2524 8442 7.501559 CCTAGAGATGAATCATGAATGTTTGGT 59.498 37.037 0.00 0.00 0.00 3.67
2525 8443 7.718314 TCCTAGAGATGAATCATGAATGTTTGG 59.282 37.037 0.00 0.00 0.00 3.28
2526 8444 8.672823 TCCTAGAGATGAATCATGAATGTTTG 57.327 34.615 0.00 0.00 0.00 2.93
2527 8445 7.444792 GCTCCTAGAGATGAATCATGAATGTTT 59.555 37.037 0.00 0.00 0.00 2.83
2528 8446 6.935771 GCTCCTAGAGATGAATCATGAATGTT 59.064 38.462 0.00 0.00 0.00 2.71
2529 8447 6.042897 TGCTCCTAGAGATGAATCATGAATGT 59.957 38.462 0.00 0.00 0.00 2.71
2530 8448 6.369340 GTGCTCCTAGAGATGAATCATGAATG 59.631 42.308 0.00 0.00 0.00 2.67
2531 8449 6.042897 TGTGCTCCTAGAGATGAATCATGAAT 59.957 38.462 0.00 0.00 0.00 2.57
2532 8450 5.364735 TGTGCTCCTAGAGATGAATCATGAA 59.635 40.000 0.00 0.00 0.00 2.57
2533 8451 4.897670 TGTGCTCCTAGAGATGAATCATGA 59.102 41.667 0.00 0.00 0.00 3.07
2534 8452 5.211174 TGTGCTCCTAGAGATGAATCATG 57.789 43.478 0.00 0.00 0.00 3.07
2535 8453 5.601729 TCTTGTGCTCCTAGAGATGAATCAT 59.398 40.000 0.00 0.00 0.00 2.45
2536 8454 4.958581 TCTTGTGCTCCTAGAGATGAATCA 59.041 41.667 0.00 0.00 0.00 2.57
2537 8455 5.528043 TCTTGTGCTCCTAGAGATGAATC 57.472 43.478 0.00 0.00 0.00 2.52
2538 8456 6.294453 CGTATCTTGTGCTCCTAGAGATGAAT 60.294 42.308 0.00 0.00 0.00 2.57
2539 8457 5.009110 CGTATCTTGTGCTCCTAGAGATGAA 59.991 44.000 0.00 0.00 0.00 2.57
2540 8458 4.517075 CGTATCTTGTGCTCCTAGAGATGA 59.483 45.833 0.00 0.00 0.00 2.92
2541 8459 4.793071 CGTATCTTGTGCTCCTAGAGATG 58.207 47.826 0.00 0.00 0.00 2.90
2542 8460 3.254657 GCGTATCTTGTGCTCCTAGAGAT 59.745 47.826 0.00 0.00 0.00 2.75
2543 8461 2.619177 GCGTATCTTGTGCTCCTAGAGA 59.381 50.000 0.00 0.00 0.00 3.10
2544 8462 2.287909 GGCGTATCTTGTGCTCCTAGAG 60.288 54.545 0.00 0.00 0.00 2.43
2545 8463 1.681793 GGCGTATCTTGTGCTCCTAGA 59.318 52.381 0.00 0.00 0.00 2.43
2546 8464 1.409064 TGGCGTATCTTGTGCTCCTAG 59.591 52.381 0.00 0.00 0.00 3.02
2547 8465 1.480789 TGGCGTATCTTGTGCTCCTA 58.519 50.000 0.00 0.00 0.00 2.94
2548 8466 0.613260 TTGGCGTATCTTGTGCTCCT 59.387 50.000 0.00 0.00 0.00 3.69
2549 8467 1.668419 ATTGGCGTATCTTGTGCTCC 58.332 50.000 0.00 0.00 0.00 4.70
2550 8468 3.194861 TGTATTGGCGTATCTTGTGCTC 58.805 45.455 0.00 0.00 0.00 4.26
2551 8469 3.198068 CTGTATTGGCGTATCTTGTGCT 58.802 45.455 0.00 0.00 0.00 4.40
2552 8470 2.287915 CCTGTATTGGCGTATCTTGTGC 59.712 50.000 0.00 0.00 0.00 4.57
2553 8471 3.555956 GTCCTGTATTGGCGTATCTTGTG 59.444 47.826 0.00 0.00 0.00 3.33
2554 8472 3.196901 TGTCCTGTATTGGCGTATCTTGT 59.803 43.478 0.00 0.00 0.00 3.16
2555 8473 3.792401 TGTCCTGTATTGGCGTATCTTG 58.208 45.455 0.00 0.00 0.00 3.02
2556 8474 4.141711 ACATGTCCTGTATTGGCGTATCTT 60.142 41.667 0.00 0.00 35.91 2.40
2557 8475 3.388024 ACATGTCCTGTATTGGCGTATCT 59.612 43.478 0.00 0.00 35.91 1.98
2558 8476 3.728845 ACATGTCCTGTATTGGCGTATC 58.271 45.455 0.00 0.00 35.91 2.24
2559 8477 3.838244 ACATGTCCTGTATTGGCGTAT 57.162 42.857 0.00 0.00 35.91 3.06
2560 8478 4.627058 CATACATGTCCTGTATTGGCGTA 58.373 43.478 0.00 0.00 46.71 4.42
2561 8479 3.466836 CATACATGTCCTGTATTGGCGT 58.533 45.455 0.00 0.00 46.71 5.68
2562 8480 2.224079 GCATACATGTCCTGTATTGGCG 59.776 50.000 0.00 0.00 46.71 5.69
2563 8481 3.003689 GTGCATACATGTCCTGTATTGGC 59.996 47.826 0.00 2.02 46.71 4.52
2564 8482 3.248363 CGTGCATACATGTCCTGTATTGG 59.752 47.826 0.00 0.00 46.71 3.16
2565 8483 3.871006 ACGTGCATACATGTCCTGTATTG 59.129 43.478 0.00 1.46 46.71 1.90
2566 8484 4.137116 ACGTGCATACATGTCCTGTATT 57.863 40.909 0.00 0.00 46.71 1.89
2568 8486 4.929819 ATACGTGCATACATGTCCTGTA 57.070 40.909 0.00 0.00 42.51 2.74
2569 8487 3.819564 ATACGTGCATACATGTCCTGT 57.180 42.857 0.00 0.00 42.51 4.00
2570 8488 9.020813 GTAATATATACGTGCATACATGTCCTG 57.979 37.037 0.00 2.44 42.51 3.86
2571 8489 8.745590 TGTAATATATACGTGCATACATGTCCT 58.254 33.333 0.00 0.00 42.51 3.85
2572 8490 8.804743 GTGTAATATATACGTGCATACATGTCC 58.195 37.037 0.00 0.00 42.51 4.02
2573 8491 9.349145 TGTGTAATATATACGTGCATACATGTC 57.651 33.333 0.00 0.00 42.51 3.06
2593 8511 9.439500 GGGAGTGTTTGTTATACTATTGTGTAA 57.561 33.333 0.00 0.00 0.00 2.41
2594 8512 8.818860 AGGGAGTGTTTGTTATACTATTGTGTA 58.181 33.333 0.00 0.00 0.00 2.90
2595 8513 7.686434 AGGGAGTGTTTGTTATACTATTGTGT 58.314 34.615 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.