Multiple sequence alignment - TraesCS5B01G306800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G306800 | chr5B | 100.000 | 3036 | 0 | 0 | 1 | 3036 | 490299372 | 490296337 | 0.000000e+00 | 5607.0 |
1 | TraesCS5B01G306800 | chr5B | 86.159 | 1669 | 124 | 45 | 943 | 2586 | 490359594 | 490358008 | 0.000000e+00 | 1703.0 |
2 | TraesCS5B01G306800 | chr5B | 89.112 | 597 | 49 | 13 | 307 | 894 | 641045130 | 641044541 | 0.000000e+00 | 728.0 |
3 | TraesCS5B01G306800 | chr5B | 80.717 | 586 | 94 | 11 | 1338 | 1907 | 490611800 | 490611218 | 3.590000e-119 | 438.0 |
4 | TraesCS5B01G306800 | chr5B | 93.750 | 128 | 7 | 1 | 56 | 182 | 490359727 | 490359600 | 1.110000e-44 | 191.0 |
5 | TraesCS5B01G306800 | chr5B | 96.970 | 66 | 2 | 0 | 1 | 66 | 490311719 | 490311654 | 8.900000e-21 | 111.0 |
6 | TraesCS5B01G306800 | chr5B | 96.154 | 52 | 2 | 0 | 2 | 53 | 17725232 | 17725283 | 5.390000e-13 | 86.1 |
7 | TraesCS5B01G306800 | chr5B | 96.970 | 33 | 0 | 1 | 2629 | 2660 | 418372124 | 418372092 | 2.000000e-03 | 54.7 |
8 | TraesCS5B01G306800 | chr5D | 94.185 | 1307 | 42 | 9 | 943 | 2237 | 408659897 | 408658613 | 0.000000e+00 | 1962.0 |
9 | TraesCS5B01G306800 | chr5D | 89.086 | 1237 | 73 | 27 | 943 | 2163 | 408742587 | 408741397 | 0.000000e+00 | 1480.0 |
10 | TraesCS5B01G306800 | chr5D | 92.249 | 787 | 50 | 7 | 2231 | 3015 | 408658138 | 408657361 | 0.000000e+00 | 1105.0 |
11 | TraesCS5B01G306800 | chr5D | 82.953 | 569 | 79 | 11 | 1338 | 1891 | 408769844 | 408769279 | 5.850000e-137 | 497.0 |
12 | TraesCS5B01G306800 | chr5D | 89.796 | 294 | 26 | 3 | 2687 | 2977 | 55542716 | 55542424 | 1.030000e-99 | 374.0 |
13 | TraesCS5B01G306800 | chr5D | 75.317 | 867 | 136 | 45 | 1068 | 1904 | 408649702 | 408648884 | 8.060000e-91 | 344.0 |
14 | TraesCS5B01G306800 | chr5D | 96.850 | 127 | 4 | 0 | 56 | 182 | 408660029 | 408659903 | 2.370000e-51 | 213.0 |
15 | TraesCS5B01G306800 | chr5D | 92.913 | 127 | 8 | 1 | 56 | 181 | 408742902 | 408742776 | 1.860000e-42 | 183.0 |
16 | TraesCS5B01G306800 | chr5D | 88.971 | 136 | 11 | 4 | 169 | 301 | 69953529 | 69953663 | 6.730000e-37 | 165.0 |
17 | TraesCS5B01G306800 | chr5D | 90.244 | 123 | 10 | 2 | 180 | 301 | 25040148 | 25040027 | 3.130000e-35 | 159.0 |
18 | TraesCS5B01G306800 | chr5D | 95.455 | 44 | 2 | 0 | 894 | 937 | 450504395 | 450504438 | 1.510000e-08 | 71.3 |
19 | TraesCS5B01G306800 | chr5D | 95.349 | 43 | 2 | 0 | 894 | 936 | 482316816 | 482316774 | 5.430000e-08 | 69.4 |
20 | TraesCS5B01G306800 | chr5D | 93.182 | 44 | 3 | 0 | 894 | 937 | 476939301 | 476939344 | 7.030000e-07 | 65.8 |
21 | TraesCS5B01G306800 | chr5A | 88.434 | 1418 | 109 | 26 | 943 | 2345 | 515496199 | 515494822 | 0.000000e+00 | 1659.0 |
22 | TraesCS5B01G306800 | chr5A | 83.389 | 1788 | 190 | 58 | 943 | 2688 | 516664852 | 516663130 | 0.000000e+00 | 1557.0 |
23 | TraesCS5B01G306800 | chr5A | 90.842 | 950 | 81 | 3 | 943 | 1891 | 516814769 | 516815713 | 0.000000e+00 | 1267.0 |
24 | TraesCS5B01G306800 | chr5A | 87.129 | 606 | 61 | 14 | 299 | 894 | 705142676 | 705142078 | 0.000000e+00 | 671.0 |
25 | TraesCS5B01G306800 | chr5A | 79.898 | 587 | 97 | 14 | 1338 | 1907 | 518412096 | 518412678 | 7.830000e-111 | 411.0 |
26 | TraesCS5B01G306800 | chr5A | 95.082 | 122 | 5 | 1 | 56 | 176 | 516664987 | 516664866 | 1.110000e-44 | 191.0 |
27 | TraesCS5B01G306800 | chr5A | 91.406 | 128 | 10 | 1 | 56 | 182 | 516814636 | 516814763 | 1.120000e-39 | 174.0 |
28 | TraesCS5B01G306800 | chr5A | 88.608 | 79 | 7 | 2 | 2608 | 2685 | 358486310 | 358486387 | 8.960000e-16 | 95.3 |
29 | TraesCS5B01G306800 | chr5A | 97.368 | 38 | 1 | 0 | 2977 | 3014 | 331393798 | 331393761 | 7.030000e-07 | 65.8 |
30 | TraesCS5B01G306800 | chr5A | 100.000 | 29 | 0 | 0 | 2344 | 2372 | 515494539 | 515494511 | 2.000000e-03 | 54.7 |
31 | TraesCS5B01G306800 | chr4A | 90.248 | 605 | 41 | 13 | 301 | 894 | 698936338 | 698935741 | 0.000000e+00 | 774.0 |
32 | TraesCS5B01G306800 | chr4A | 91.304 | 46 | 2 | 2 | 2604 | 2648 | 629939961 | 629939917 | 9.090000e-06 | 62.1 |
33 | TraesCS5B01G306800 | chr7B | 89.238 | 604 | 49 | 13 | 302 | 894 | 604111114 | 604111712 | 0.000000e+00 | 741.0 |
34 | TraesCS5B01G306800 | chr7B | 88.462 | 624 | 42 | 16 | 301 | 894 | 614831497 | 614830874 | 0.000000e+00 | 726.0 |
35 | TraesCS5B01G306800 | chr7B | 88.170 | 634 | 35 | 12 | 301 | 894 | 551062363 | 551062996 | 0.000000e+00 | 719.0 |
36 | TraesCS5B01G306800 | chr7B | 88.862 | 413 | 28 | 12 | 302 | 708 | 219593040 | 219593440 | 2.720000e-135 | 492.0 |
37 | TraesCS5B01G306800 | chr7B | 91.045 | 67 | 5 | 1 | 2 | 68 | 615777277 | 615777342 | 4.170000e-14 | 89.8 |
38 | TraesCS5B01G306800 | chr6B | 89.765 | 596 | 34 | 12 | 301 | 894 | 3571869 | 3572439 | 0.000000e+00 | 737.0 |
39 | TraesCS5B01G306800 | chr3B | 88.667 | 600 | 48 | 15 | 300 | 893 | 562781535 | 562782120 | 0.000000e+00 | 713.0 |
40 | TraesCS5B01G306800 | chr3B | 86.634 | 404 | 33 | 14 | 502 | 894 | 158206676 | 158206283 | 7.780000e-116 | 427.0 |
41 | TraesCS5B01G306800 | chr3B | 91.958 | 286 | 22 | 1 | 2692 | 2977 | 377115119 | 377115403 | 1.700000e-107 | 399.0 |
42 | TraesCS5B01G306800 | chr3B | 88.779 | 303 | 29 | 4 | 2686 | 2987 | 760315784 | 760315486 | 1.720000e-97 | 366.0 |
43 | TraesCS5B01G306800 | chr3B | 95.122 | 41 | 2 | 0 | 2979 | 3019 | 659582858 | 659582818 | 7.030000e-07 | 65.8 |
44 | TraesCS5B01G306800 | chr6A | 87.049 | 610 | 51 | 16 | 301 | 894 | 605219888 | 605219291 | 0.000000e+00 | 664.0 |
45 | TraesCS5B01G306800 | chr6A | 90.476 | 126 | 10 | 2 | 177 | 301 | 445831589 | 445831465 | 6.730000e-37 | 165.0 |
46 | TraesCS5B01G306800 | chr6A | 95.556 | 45 | 2 | 0 | 894 | 938 | 2329652 | 2329696 | 4.200000e-09 | 73.1 |
47 | TraesCS5B01G306800 | chr6A | 95.455 | 44 | 2 | 0 | 894 | 937 | 132669222 | 132669265 | 1.510000e-08 | 71.3 |
48 | TraesCS5B01G306800 | chr3D | 91.259 | 286 | 25 | 0 | 2692 | 2977 | 255424391 | 255424676 | 1.020000e-104 | 390.0 |
49 | TraesCS5B01G306800 | chr3D | 89.600 | 125 | 12 | 1 | 178 | 301 | 79558534 | 79558658 | 1.130000e-34 | 158.0 |
50 | TraesCS5B01G306800 | chr3D | 93.103 | 58 | 4 | 0 | 2 | 59 | 487246964 | 487246907 | 5.390000e-13 | 86.1 |
51 | TraesCS5B01G306800 | chr3D | 95.238 | 42 | 1 | 1 | 2979 | 3020 | 498873783 | 498873743 | 7.030000e-07 | 65.8 |
52 | TraesCS5B01G306800 | chr6D | 90.508 | 295 | 27 | 1 | 2683 | 2977 | 327021860 | 327022153 | 3.670000e-104 | 388.0 |
53 | TraesCS5B01G306800 | chr6D | 95.455 | 44 | 2 | 0 | 894 | 937 | 45212493 | 45212536 | 1.510000e-08 | 71.3 |
54 | TraesCS5B01G306800 | chr6D | 95.455 | 44 | 2 | 0 | 894 | 937 | 450859128 | 450859085 | 1.510000e-08 | 71.3 |
55 | TraesCS5B01G306800 | chr6D | 93.182 | 44 | 3 | 0 | 894 | 937 | 455575055 | 455575098 | 7.030000e-07 | 65.8 |
56 | TraesCS5B01G306800 | chr6D | 97.297 | 37 | 1 | 0 | 901 | 937 | 262605005 | 262605041 | 2.530000e-06 | 63.9 |
57 | TraesCS5B01G306800 | chr6D | 94.595 | 37 | 2 | 0 | 901 | 937 | 438836533 | 438836497 | 1.180000e-04 | 58.4 |
58 | TraesCS5B01G306800 | chr3A | 90.941 | 287 | 25 | 1 | 2692 | 2977 | 319962311 | 319962597 | 4.750000e-103 | 385.0 |
59 | TraesCS5B01G306800 | chr3A | 88.550 | 131 | 12 | 3 | 173 | 301 | 362899669 | 362899798 | 4.050000e-34 | 156.0 |
60 | TraesCS5B01G306800 | chr3A | 95.000 | 40 | 2 | 0 | 2979 | 3018 | 638983871 | 638983832 | 2.530000e-06 | 63.9 |
61 | TraesCS5B01G306800 | chr3A | 97.059 | 34 | 1 | 0 | 2608 | 2641 | 336867532 | 336867499 | 1.180000e-04 | 58.4 |
62 | TraesCS5B01G306800 | chr2B | 90.068 | 292 | 29 | 0 | 2686 | 2977 | 697672621 | 697672330 | 2.210000e-101 | 379.0 |
63 | TraesCS5B01G306800 | chr2B | 93.103 | 58 | 4 | 0 | 2 | 59 | 161202326 | 161202383 | 5.390000e-13 | 86.1 |
64 | TraesCS5B01G306800 | chr2B | 84.810 | 79 | 11 | 1 | 2608 | 2685 | 403097899 | 403097821 | 9.020000e-11 | 78.7 |
65 | TraesCS5B01G306800 | chr2B | 84.615 | 78 | 12 | 0 | 2608 | 2685 | 482739022 | 482739099 | 9.020000e-11 | 78.7 |
66 | TraesCS5B01G306800 | chr4D | 89.527 | 296 | 26 | 5 | 2684 | 2979 | 12002237 | 12002527 | 1.330000e-98 | 370.0 |
67 | TraesCS5B01G306800 | chr4D | 92.857 | 42 | 3 | 0 | 896 | 937 | 55272007 | 55271966 | 9.090000e-06 | 62.1 |
68 | TraesCS5B01G306800 | chr4D | 100.000 | 33 | 0 | 0 | 905 | 937 | 455016496 | 455016464 | 9.090000e-06 | 62.1 |
69 | TraesCS5B01G306800 | chr7D | 91.129 | 124 | 7 | 3 | 180 | 301 | 543567057 | 543566936 | 6.730000e-37 | 165.0 |
70 | TraesCS5B01G306800 | chr7D | 92.857 | 56 | 4 | 0 | 2 | 57 | 564671245 | 564671300 | 6.980000e-12 | 82.4 |
71 | TraesCS5B01G306800 | chr2D | 90.984 | 122 | 9 | 2 | 181 | 301 | 203448685 | 203448805 | 2.420000e-36 | 163.0 |
72 | TraesCS5B01G306800 | chr2D | 85.897 | 78 | 11 | 0 | 2608 | 2685 | 406958412 | 406958489 | 1.940000e-12 | 84.2 |
73 | TraesCS5B01G306800 | chr2D | 95.455 | 44 | 2 | 0 | 894 | 937 | 247099627 | 247099670 | 1.510000e-08 | 71.3 |
74 | TraesCS5B01G306800 | chr2D | 95.455 | 44 | 2 | 0 | 894 | 937 | 534928822 | 534928779 | 1.510000e-08 | 71.3 |
75 | TraesCS5B01G306800 | chr2A | 90.476 | 126 | 8 | 4 | 178 | 301 | 770140140 | 770140017 | 2.420000e-36 | 163.0 |
76 | TraesCS5B01G306800 | chr2A | 88.462 | 78 | 9 | 0 | 2608 | 2685 | 739302572 | 739302495 | 8.960000e-16 | 95.3 |
77 | TraesCS5B01G306800 | chr2A | 89.831 | 59 | 6 | 0 | 2 | 60 | 573366206 | 573366148 | 3.250000e-10 | 76.8 |
78 | TraesCS5B01G306800 | chrUn | 89.683 | 126 | 9 | 4 | 178 | 301 | 345391541 | 345391418 | 1.130000e-34 | 158.0 |
79 | TraesCS5B01G306800 | chrUn | 95.455 | 44 | 2 | 0 | 894 | 937 | 50991811 | 50991768 | 1.510000e-08 | 71.3 |
80 | TraesCS5B01G306800 | chr7A | 91.525 | 59 | 5 | 0 | 2 | 60 | 416429010 | 416429068 | 6.980000e-12 | 82.4 |
81 | TraesCS5B01G306800 | chr7A | 95.556 | 45 | 2 | 0 | 894 | 938 | 126999509 | 126999553 | 4.200000e-09 | 73.1 |
82 | TraesCS5B01G306800 | chr7A | 91.304 | 46 | 3 | 1 | 2602 | 2647 | 144130894 | 144130938 | 9.090000e-06 | 62.1 |
83 | TraesCS5B01G306800 | chr1A | 89.831 | 59 | 6 | 0 | 1 | 59 | 256964006 | 256964064 | 3.250000e-10 | 76.8 |
84 | TraesCS5B01G306800 | chr1D | 95.455 | 44 | 2 | 0 | 894 | 937 | 298558343 | 298558300 | 1.510000e-08 | 71.3 |
85 | TraesCS5B01G306800 | chr1D | 95.349 | 43 | 2 | 0 | 896 | 938 | 341842539 | 341842581 | 5.430000e-08 | 69.4 |
86 | TraesCS5B01G306800 | chr1D | 94.595 | 37 | 2 | 0 | 901 | 937 | 52974222 | 52974186 | 1.180000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G306800 | chr5B | 490296337 | 490299372 | 3035 | True | 5607.000000 | 5607 | 100.0000 | 1 | 3036 | 1 | chr5B.!!$R2 | 3035 |
1 | TraesCS5B01G306800 | chr5B | 490358008 | 490359727 | 1719 | True | 947.000000 | 1703 | 89.9545 | 56 | 2586 | 2 | chr5B.!!$R6 | 2530 |
2 | TraesCS5B01G306800 | chr5B | 641044541 | 641045130 | 589 | True | 728.000000 | 728 | 89.1120 | 307 | 894 | 1 | chr5B.!!$R5 | 587 |
3 | TraesCS5B01G306800 | chr5B | 490611218 | 490611800 | 582 | True | 438.000000 | 438 | 80.7170 | 1338 | 1907 | 1 | chr5B.!!$R4 | 569 |
4 | TraesCS5B01G306800 | chr5D | 408657361 | 408660029 | 2668 | True | 1093.333333 | 1962 | 94.4280 | 56 | 3015 | 3 | chr5D.!!$R6 | 2959 |
5 | TraesCS5B01G306800 | chr5D | 408741397 | 408742902 | 1505 | True | 831.500000 | 1480 | 90.9995 | 56 | 2163 | 2 | chr5D.!!$R7 | 2107 |
6 | TraesCS5B01G306800 | chr5D | 408769279 | 408769844 | 565 | True | 497.000000 | 497 | 82.9530 | 1338 | 1891 | 1 | chr5D.!!$R4 | 553 |
7 | TraesCS5B01G306800 | chr5D | 408648884 | 408649702 | 818 | True | 344.000000 | 344 | 75.3170 | 1068 | 1904 | 1 | chr5D.!!$R3 | 836 |
8 | TraesCS5B01G306800 | chr5A | 516663130 | 516664987 | 1857 | True | 874.000000 | 1557 | 89.2355 | 56 | 2688 | 2 | chr5A.!!$R4 | 2632 |
9 | TraesCS5B01G306800 | chr5A | 515494511 | 515496199 | 1688 | True | 856.850000 | 1659 | 94.2170 | 943 | 2372 | 2 | chr5A.!!$R3 | 1429 |
10 | TraesCS5B01G306800 | chr5A | 516814636 | 516815713 | 1077 | False | 720.500000 | 1267 | 91.1240 | 56 | 1891 | 2 | chr5A.!!$F3 | 1835 |
11 | TraesCS5B01G306800 | chr5A | 705142078 | 705142676 | 598 | True | 671.000000 | 671 | 87.1290 | 299 | 894 | 1 | chr5A.!!$R2 | 595 |
12 | TraesCS5B01G306800 | chr5A | 518412096 | 518412678 | 582 | False | 411.000000 | 411 | 79.8980 | 1338 | 1907 | 1 | chr5A.!!$F2 | 569 |
13 | TraesCS5B01G306800 | chr4A | 698935741 | 698936338 | 597 | True | 774.000000 | 774 | 90.2480 | 301 | 894 | 1 | chr4A.!!$R2 | 593 |
14 | TraesCS5B01G306800 | chr7B | 604111114 | 604111712 | 598 | False | 741.000000 | 741 | 89.2380 | 302 | 894 | 1 | chr7B.!!$F3 | 592 |
15 | TraesCS5B01G306800 | chr7B | 614830874 | 614831497 | 623 | True | 726.000000 | 726 | 88.4620 | 301 | 894 | 1 | chr7B.!!$R1 | 593 |
16 | TraesCS5B01G306800 | chr7B | 551062363 | 551062996 | 633 | False | 719.000000 | 719 | 88.1700 | 301 | 894 | 1 | chr7B.!!$F2 | 593 |
17 | TraesCS5B01G306800 | chr6B | 3571869 | 3572439 | 570 | False | 737.000000 | 737 | 89.7650 | 301 | 894 | 1 | chr6B.!!$F1 | 593 |
18 | TraesCS5B01G306800 | chr3B | 562781535 | 562782120 | 585 | False | 713.000000 | 713 | 88.6670 | 300 | 893 | 1 | chr3B.!!$F2 | 593 |
19 | TraesCS5B01G306800 | chr6A | 605219291 | 605219888 | 597 | True | 664.000000 | 664 | 87.0490 | 301 | 894 | 1 | chr6A.!!$R2 | 593 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
898 | 1261 | 0.106015 | AAACAAGCAGGGCCTCACTT | 60.106 | 50.0 | 0.95 | 7.94 | 0.0 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2745 | 3979 | 1.266178 | GGAAGGTTGGACAAATGGGG | 58.734 | 55.0 | 0.0 | 0.0 | 0.0 | 4.96 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
33 | 34 | 9.846248 | ACATGCAAGACTTGAAATAAAACTATC | 57.154 | 29.630 | 19.51 | 0.00 | 0.00 | 2.08 |
182 | 366 | 8.579006 | ACCATTTCCGTGAGATAAACGTATATA | 58.421 | 33.333 | 0.00 | 0.00 | 39.38 | 0.86 |
183 | 367 | 9.582431 | CCATTTCCGTGAGATAAACGTATATAT | 57.418 | 33.333 | 0.00 | 0.00 | 39.38 | 0.86 |
189 | 373 | 9.713740 | CCGTGAGATAAACGTATATATTACTCC | 57.286 | 37.037 | 0.00 | 0.00 | 39.38 | 3.85 |
198 | 382 | 9.768662 | AAACGTATATATTACTCCATCCGTTTT | 57.231 | 29.630 | 0.00 | 0.00 | 40.54 | 2.43 |
199 | 383 | 9.768662 | AACGTATATATTACTCCATCCGTTTTT | 57.231 | 29.630 | 0.00 | 0.00 | 31.60 | 1.94 |
211 | 395 | 9.990360 | ACTCCATCCGTTTTTAAATATTTGTTT | 57.010 | 25.926 | 11.05 | 0.00 | 0.00 | 2.83 |
232 | 416 | 9.442047 | TTGTTTTTGGTACATTTCAAATGAACT | 57.558 | 25.926 | 17.30 | 0.00 | 39.30 | 3.01 |
237 | 421 | 9.906660 | TTTGGTACATTTCAAATGAACTATCAC | 57.093 | 29.630 | 17.30 | 3.12 | 36.77 | 3.06 |
238 | 422 | 8.628630 | TGGTACATTTCAAATGAACTATCACA | 57.371 | 30.769 | 17.30 | 1.94 | 38.69 | 3.58 |
239 | 423 | 9.241919 | TGGTACATTTCAAATGAACTATCACAT | 57.758 | 29.630 | 17.30 | 0.00 | 38.69 | 3.21 |
243 | 427 | 9.161629 | ACATTTCAAATGAACTATCACATACGA | 57.838 | 29.630 | 17.30 | 0.00 | 38.69 | 3.43 |
244 | 428 | 9.986833 | CATTTCAAATGAACTATCACATACGAA | 57.013 | 29.630 | 3.82 | 0.00 | 38.69 | 3.85 |
246 | 430 | 9.986833 | TTTCAAATGAACTATCACATACGAATG | 57.013 | 29.630 | 0.00 | 0.00 | 38.69 | 2.67 |
248 | 432 | 9.810545 | TCAAATGAACTATCACATACGAATGTA | 57.189 | 29.630 | 0.00 | 0.00 | 44.70 | 2.29 |
289 | 473 | 6.906659 | AGTGTAGATTCACTCATTTTGCTTG | 58.093 | 36.000 | 0.00 | 0.00 | 44.07 | 4.01 |
290 | 474 | 6.072286 | AGTGTAGATTCACTCATTTTGCTTGG | 60.072 | 38.462 | 0.00 | 0.00 | 44.07 | 3.61 |
291 | 475 | 5.769662 | TGTAGATTCACTCATTTTGCTTGGT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
292 | 476 | 6.939730 | TGTAGATTCACTCATTTTGCTTGGTA | 59.060 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
293 | 477 | 7.611467 | TGTAGATTCACTCATTTTGCTTGGTAT | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
294 | 478 | 6.860080 | AGATTCACTCATTTTGCTTGGTATG | 58.140 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
295 | 479 | 6.435277 | AGATTCACTCATTTTGCTTGGTATGT | 59.565 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
296 | 480 | 7.611467 | AGATTCACTCATTTTGCTTGGTATGTA | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
297 | 481 | 6.741992 | TCACTCATTTTGCTTGGTATGTAG | 57.258 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
304 | 488 | 5.483685 | TTTGCTTGGTATGTAGTCAGAGT | 57.516 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
333 | 517 | 5.212745 | TGTTTCCAGGGACTTATTGGTTTT | 58.787 | 37.500 | 0.00 | 0.00 | 34.60 | 2.43 |
335 | 519 | 4.733077 | TCCAGGGACTTATTGGTTTTGA | 57.267 | 40.909 | 0.00 | 0.00 | 34.60 | 2.69 |
438 | 622 | 7.841729 | ACTTATCAAATAAGACTCTCAGGGAGA | 59.158 | 37.037 | 3.57 | 0.00 | 43.85 | 3.71 |
448 | 632 | 4.357325 | ACTCTCAGGGAGAAGCTTATTGA | 58.643 | 43.478 | 3.57 | 0.00 | 44.45 | 2.57 |
695 | 1058 | 1.134220 | AGTTCGTTCTGCCTTGGTTCA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
728 | 1091 | 2.350895 | CAATCACCGGACAGGCCA | 59.649 | 61.111 | 9.46 | 0.00 | 46.52 | 5.36 |
797 | 1160 | 6.937436 | CTGTAAACAAACAGGTAGGAACTT | 57.063 | 37.500 | 0.00 | 0.00 | 42.63 | 2.66 |
847 | 1210 | 5.421374 | ACAGGTAGGGACTTGTGACTTATAC | 59.579 | 44.000 | 0.00 | 0.00 | 43.72 | 1.47 |
853 | 1216 | 4.322198 | GGGACTTGTGACTTATACGTTGGA | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
894 | 1257 | 2.128771 | TATGAAACAAGCAGGGCCTC | 57.871 | 50.000 | 0.95 | 0.00 | 0.00 | 4.70 |
895 | 1258 | 0.112995 | ATGAAACAAGCAGGGCCTCA | 59.887 | 50.000 | 0.95 | 0.00 | 0.00 | 3.86 |
896 | 1259 | 0.823356 | TGAAACAAGCAGGGCCTCAC | 60.823 | 55.000 | 0.95 | 0.00 | 0.00 | 3.51 |
897 | 1260 | 0.538287 | GAAACAAGCAGGGCCTCACT | 60.538 | 55.000 | 0.95 | 0.11 | 0.00 | 3.41 |
898 | 1261 | 0.106015 | AAACAAGCAGGGCCTCACTT | 60.106 | 50.000 | 0.95 | 7.94 | 0.00 | 3.16 |
899 | 1262 | 0.825010 | AACAAGCAGGGCCTCACTTG | 60.825 | 55.000 | 30.69 | 30.69 | 43.99 | 3.16 |
900 | 1263 | 1.228367 | CAAGCAGGGCCTCACTTGT | 60.228 | 57.895 | 26.90 | 4.96 | 35.81 | 3.16 |
901 | 1264 | 0.825010 | CAAGCAGGGCCTCACTTGTT | 60.825 | 55.000 | 26.90 | 5.61 | 35.81 | 2.83 |
902 | 1265 | 0.825010 | AAGCAGGGCCTCACTTGTTG | 60.825 | 55.000 | 15.77 | 0.00 | 0.00 | 3.33 |
903 | 1266 | 2.270986 | GCAGGGCCTCACTTGTTGG | 61.271 | 63.158 | 0.95 | 0.00 | 0.00 | 3.77 |
904 | 1267 | 1.455849 | CAGGGCCTCACTTGTTGGA | 59.544 | 57.895 | 0.95 | 0.00 | 0.00 | 3.53 |
905 | 1268 | 0.178992 | CAGGGCCTCACTTGTTGGAA | 60.179 | 55.000 | 0.95 | 0.00 | 0.00 | 3.53 |
906 | 1269 | 0.779997 | AGGGCCTCACTTGTTGGAAT | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
907 | 1270 | 0.890683 | GGGCCTCACTTGTTGGAATG | 59.109 | 55.000 | 0.84 | 0.00 | 0.00 | 2.67 |
908 | 1271 | 1.620822 | GGCCTCACTTGTTGGAATGT | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
909 | 1272 | 1.541588 | GGCCTCACTTGTTGGAATGTC | 59.458 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
910 | 1273 | 2.508526 | GCCTCACTTGTTGGAATGTCT | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
911 | 1274 | 3.559171 | GGCCTCACTTGTTGGAATGTCTA | 60.559 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
912 | 1275 | 3.686726 | GCCTCACTTGTTGGAATGTCTAG | 59.313 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
913 | 1276 | 4.563580 | GCCTCACTTGTTGGAATGTCTAGA | 60.564 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
914 | 1277 | 5.551233 | CCTCACTTGTTGGAATGTCTAGAA | 58.449 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
915 | 1278 | 5.997746 | CCTCACTTGTTGGAATGTCTAGAAA | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
916 | 1279 | 6.486657 | CCTCACTTGTTGGAATGTCTAGAAAA | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
917 | 1280 | 7.013274 | CCTCACTTGTTGGAATGTCTAGAAAAA | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
918 | 1281 | 7.703328 | TCACTTGTTGGAATGTCTAGAAAAAC | 58.297 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
919 | 1282 | 7.338196 | TCACTTGTTGGAATGTCTAGAAAAACA | 59.662 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
920 | 1283 | 7.973388 | CACTTGTTGGAATGTCTAGAAAAACAA | 59.027 | 33.333 | 9.32 | 9.32 | 35.60 | 2.83 |
921 | 1284 | 8.527810 | ACTTGTTGGAATGTCTAGAAAAACAAA | 58.472 | 29.630 | 10.45 | 0.00 | 36.26 | 2.83 |
922 | 1285 | 9.533253 | CTTGTTGGAATGTCTAGAAAAACAAAT | 57.467 | 29.630 | 10.45 | 0.00 | 36.26 | 2.32 |
937 | 1300 | 9.292195 | AGAAAAACAAATATTTAGGAACGGAGA | 57.708 | 29.630 | 0.00 | 0.00 | 0.00 | 3.71 |
964 | 1327 | 2.520500 | AACCGCCAATGTGCCACA | 60.521 | 55.556 | 0.00 | 0.00 | 0.00 | 4.17 |
1151 | 1528 | 1.074889 | ACCACCACCACCAGTTTATCC | 59.925 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
1387 | 1768 | 2.930562 | GAGGGGCCCACAGTCAGT | 60.931 | 66.667 | 27.72 | 0.00 | 0.00 | 3.41 |
1742 | 2144 | 2.279120 | CGGCGAGACTGATGAGCC | 60.279 | 66.667 | 0.00 | 0.00 | 44.00 | 4.70 |
1760 | 2162 | 4.482684 | CGCTCCGCTCGCTTGAGA | 62.483 | 66.667 | 8.80 | 0.00 | 42.66 | 3.27 |
1980 | 2412 | 1.335597 | CGTACGGTCGATGCCACATAT | 60.336 | 52.381 | 7.57 | 0.00 | 0.00 | 1.78 |
1981 | 2413 | 2.750948 | GTACGGTCGATGCCACATATT | 58.249 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
1982 | 2414 | 1.581934 | ACGGTCGATGCCACATATTG | 58.418 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1983 | 2415 | 0.235665 | CGGTCGATGCCACATATTGC | 59.764 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1984 | 2416 | 0.593128 | GGTCGATGCCACATATTGCC | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1985 | 2417 | 1.308047 | GTCGATGCCACATATTGCCA | 58.692 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1986 | 2418 | 1.881973 | GTCGATGCCACATATTGCCAT | 59.118 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1987 | 2419 | 1.881324 | TCGATGCCACATATTGCCATG | 59.119 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
1988 | 2420 | 1.667756 | CGATGCCACATATTGCCATGC | 60.668 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
1989 | 2421 | 1.341852 | GATGCCACATATTGCCATGCA | 59.658 | 47.619 | 0.00 | 0.00 | 36.47 | 3.96 |
1990 | 2422 | 1.415200 | TGCCACATATTGCCATGCAT | 58.585 | 45.000 | 0.00 | 0.00 | 38.76 | 3.96 |
1991 | 2423 | 1.069358 | TGCCACATATTGCCATGCATG | 59.931 | 47.619 | 20.19 | 20.19 | 38.76 | 4.06 |
1992 | 2424 | 1.069513 | GCCACATATTGCCATGCATGT | 59.930 | 47.619 | 24.58 | 9.25 | 38.76 | 3.21 |
2010 | 2442 | 2.695359 | TGTTGGTAATTCTGTCGCCTC | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
2070 | 2502 | 4.647424 | TTCAACATCACTTGGTTCCAAC | 57.353 | 40.909 | 0.00 | 0.00 | 0.00 | 3.77 |
2101 | 2541 | 3.452990 | TGTAAACAGTGACCAGTGAAGGA | 59.547 | 43.478 | 11.43 | 0.00 | 35.75 | 3.36 |
2120 | 2560 | 3.879295 | AGGATTGTTTGGATCTATGCGTG | 59.121 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
2163 | 2605 | 6.968904 | CGGACGTGTGTTACTAGTGTTATTAT | 59.031 | 38.462 | 5.39 | 0.00 | 0.00 | 1.28 |
2164 | 2606 | 8.122330 | CGGACGTGTGTTACTAGTGTTATTATA | 58.878 | 37.037 | 5.39 | 0.00 | 0.00 | 0.98 |
2167 | 2609 | 9.241317 | ACGTGTGTTACTAGTGTTATTATATGC | 57.759 | 33.333 | 5.39 | 0.00 | 0.00 | 3.14 |
2257 | 3182 | 3.717707 | ACATGTATGCGTGTCCTGTATC | 58.282 | 45.455 | 2.42 | 0.00 | 40.57 | 2.24 |
2388 | 3598 | 9.899226 | TCTCTATAATTCAATACATCGACAGTG | 57.101 | 33.333 | 2.79 | 0.00 | 0.00 | 3.66 |
2410 | 3626 | 8.946085 | CAGTGCACTAGTTTTGATATTAGGAAA | 58.054 | 33.333 | 21.20 | 0.00 | 0.00 | 3.13 |
2502 | 3722 | 4.934602 | AGGATTTCTTGCTTCTTTCTCTCG | 59.065 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
2512 | 3732 | 1.063806 | CTTTCTCTCGTGCAGAACCG | 58.936 | 55.000 | 0.00 | 0.00 | 29.30 | 4.44 |
2526 | 3746 | 2.549754 | CAGAACCGTGCATGAGACTTTT | 59.450 | 45.455 | 7.72 | 0.00 | 0.00 | 2.27 |
2588 | 3809 | 7.505923 | AGATTTTAAGGGTTTTTAGTCACTGCT | 59.494 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
2596 | 3817 | 2.839486 | TTAGTCACTGCTGGACCTTG | 57.161 | 50.000 | 0.00 | 0.00 | 35.89 | 3.61 |
2659 | 3893 | 9.581289 | TGTTTTGGATATTTCGGTATGGATTAT | 57.419 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
2745 | 3979 | 8.512956 | GTTCTTATTTTACCTTTCTTCTCACCC | 58.487 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
2764 | 3998 | 1.266178 | CCCCATTTGTCCAACCTTCC | 58.734 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2809 | 4043 | 8.776470 | CACCTTAATTTACTTACTTTCCGAACA | 58.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2879 | 4113 | 4.654091 | ATTTACGGGCAGAATTTGATGG | 57.346 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
2971 | 4205 | 1.300003 | TTGCAACGCACTGGCATTG | 60.300 | 52.632 | 0.00 | 0.00 | 45.48 | 2.82 |
2982 | 4216 | 3.065371 | GCACTGGCATTGTTCTATACACC | 59.935 | 47.826 | 6.71 | 0.00 | 40.72 | 4.16 |
3004 | 4238 | 8.494433 | ACACCAAAACATGTCTATATACATCCT | 58.506 | 33.333 | 0.00 | 0.00 | 38.01 | 3.24 |
3021 | 4255 | 8.970859 | ATACATCCTATTCAGAAAACAAGGAG | 57.029 | 34.615 | 10.83 | 7.19 | 36.62 | 3.69 |
3022 | 4256 | 6.183347 | ACATCCTATTCAGAAAACAAGGAGG | 58.817 | 40.000 | 13.30 | 13.30 | 39.99 | 4.30 |
3023 | 4257 | 5.179452 | TCCTATTCAGAAAACAAGGAGGG | 57.821 | 43.478 | 3.81 | 0.00 | 0.00 | 4.30 |
3024 | 4258 | 4.849810 | TCCTATTCAGAAAACAAGGAGGGA | 59.150 | 41.667 | 3.81 | 0.00 | 0.00 | 4.20 |
3025 | 4259 | 5.045578 | TCCTATTCAGAAAACAAGGAGGGAG | 60.046 | 44.000 | 3.81 | 0.00 | 0.00 | 4.30 |
3026 | 4260 | 4.731313 | ATTCAGAAAACAAGGAGGGAGT | 57.269 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
3027 | 4261 | 5.843019 | ATTCAGAAAACAAGGAGGGAGTA | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
3028 | 4262 | 5.843019 | TTCAGAAAACAAGGAGGGAGTAT | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
3029 | 4263 | 5.843019 | TCAGAAAACAAGGAGGGAGTATT | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
3030 | 4264 | 6.200878 | TCAGAAAACAAGGAGGGAGTATTT | 57.799 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3031 | 4265 | 6.610830 | TCAGAAAACAAGGAGGGAGTATTTT | 58.389 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3032 | 4266 | 6.490040 | TCAGAAAACAAGGAGGGAGTATTTTG | 59.510 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
3033 | 4267 | 6.490040 | CAGAAAACAAGGAGGGAGTATTTTGA | 59.510 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
3034 | 4268 | 7.014230 | CAGAAAACAAGGAGGGAGTATTTTGAA | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
3035 | 4269 | 6.650427 | AAACAAGGAGGGAGTATTTTGAAC | 57.350 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
7 | 8 | 9.846248 | GATAGTTTTATTTCAAGTCTTGCATGT | 57.154 | 29.630 | 7.78 | 0.00 | 0.00 | 3.21 |
37 | 38 | 9.826574 | GTTAGTTAGGGTATGTACAATGATTGA | 57.173 | 33.333 | 12.80 | 0.00 | 0.00 | 2.57 |
38 | 39 | 9.052759 | GGTTAGTTAGGGTATGTACAATGATTG | 57.947 | 37.037 | 3.16 | 3.16 | 0.00 | 2.67 |
39 | 40 | 8.999895 | AGGTTAGTTAGGGTATGTACAATGATT | 58.000 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
40 | 41 | 8.562949 | AGGTTAGTTAGGGTATGTACAATGAT | 57.437 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
41 | 42 | 7.983166 | AGGTTAGTTAGGGTATGTACAATGA | 57.017 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
45 | 46 | 9.270707 | ACAATTAGGTTAGTTAGGGTATGTACA | 57.729 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
46 | 47 | 9.755804 | GACAATTAGGTTAGTTAGGGTATGTAC | 57.244 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
47 | 48 | 9.491406 | TGACAATTAGGTTAGTTAGGGTATGTA | 57.509 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
48 | 49 | 8.383374 | TGACAATTAGGTTAGTTAGGGTATGT | 57.617 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
49 | 50 | 9.490379 | GATGACAATTAGGTTAGTTAGGGTATG | 57.510 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
50 | 51 | 9.448587 | AGATGACAATTAGGTTAGTTAGGGTAT | 57.551 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
51 | 52 | 8.849543 | AGATGACAATTAGGTTAGTTAGGGTA | 57.150 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
52 | 53 | 7.750947 | AGATGACAATTAGGTTAGTTAGGGT | 57.249 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
58 | 59 | 9.614792 | GAACCAATAGATGACAATTAGGTTAGT | 57.385 | 33.333 | 0.00 | 0.00 | 37.00 | 2.24 |
206 | 390 | 9.442047 | AGTTCATTTGAAATGTACCAAAAACAA | 57.558 | 25.926 | 19.56 | 1.76 | 36.10 | 2.83 |
211 | 395 | 9.906660 | GTGATAGTTCATTTGAAATGTACCAAA | 57.093 | 29.630 | 19.56 | 9.58 | 35.58 | 3.28 |
212 | 396 | 9.072375 | TGTGATAGTTCATTTGAAATGTACCAA | 57.928 | 29.630 | 19.56 | 11.55 | 35.58 | 3.67 |
213 | 397 | 8.628630 | TGTGATAGTTCATTTGAAATGTACCA | 57.371 | 30.769 | 19.56 | 10.25 | 35.58 | 3.25 |
217 | 401 | 9.161629 | TCGTATGTGATAGTTCATTTGAAATGT | 57.838 | 29.630 | 16.62 | 1.69 | 35.58 | 2.71 |
218 | 402 | 9.986833 | TTCGTATGTGATAGTTCATTTGAAATG | 57.013 | 29.630 | 11.54 | 11.54 | 35.58 | 2.32 |
220 | 404 | 9.986833 | CATTCGTATGTGATAGTTCATTTGAAA | 57.013 | 29.630 | 0.00 | 0.00 | 35.58 | 2.69 |
221 | 405 | 9.161629 | ACATTCGTATGTGATAGTTCATTTGAA | 57.838 | 29.630 | 6.89 | 0.00 | 43.29 | 2.69 |
222 | 406 | 8.716646 | ACATTCGTATGTGATAGTTCATTTGA | 57.283 | 30.769 | 6.89 | 0.00 | 43.29 | 2.69 |
266 | 450 | 6.088824 | CCAAGCAAAATGAGTGAATCTACAC | 58.911 | 40.000 | 0.00 | 0.00 | 40.60 | 2.90 |
267 | 451 | 5.769662 | ACCAAGCAAAATGAGTGAATCTACA | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
268 | 452 | 6.259550 | ACCAAGCAAAATGAGTGAATCTAC | 57.740 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
269 | 453 | 7.611467 | ACATACCAAGCAAAATGAGTGAATCTA | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
270 | 454 | 6.435277 | ACATACCAAGCAAAATGAGTGAATCT | 59.565 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
271 | 455 | 6.624423 | ACATACCAAGCAAAATGAGTGAATC | 58.376 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
272 | 456 | 6.594788 | ACATACCAAGCAAAATGAGTGAAT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
273 | 457 | 6.714810 | ACTACATACCAAGCAAAATGAGTGAA | 59.285 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
274 | 458 | 6.237901 | ACTACATACCAAGCAAAATGAGTGA | 58.762 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
275 | 459 | 6.149308 | TGACTACATACCAAGCAAAATGAGTG | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
276 | 460 | 6.237901 | TGACTACATACCAAGCAAAATGAGT | 58.762 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
277 | 461 | 6.595326 | TCTGACTACATACCAAGCAAAATGAG | 59.405 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
278 | 462 | 6.472016 | TCTGACTACATACCAAGCAAAATGA | 58.528 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
279 | 463 | 6.372659 | ACTCTGACTACATACCAAGCAAAATG | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
280 | 464 | 6.372659 | CACTCTGACTACATACCAAGCAAAAT | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
281 | 465 | 5.700832 | CACTCTGACTACATACCAAGCAAAA | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
282 | 466 | 5.221641 | ACACTCTGACTACATACCAAGCAAA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
283 | 467 | 4.283467 | ACACTCTGACTACATACCAAGCAA | 59.717 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
284 | 468 | 3.832490 | ACACTCTGACTACATACCAAGCA | 59.168 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
285 | 469 | 4.177026 | CACACTCTGACTACATACCAAGC | 58.823 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
286 | 470 | 5.392767 | ACACACTCTGACTACATACCAAG | 57.607 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
287 | 471 | 5.801531 | AACACACTCTGACTACATACCAA | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
288 | 472 | 5.069914 | ACAAACACACTCTGACTACATACCA | 59.930 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
289 | 473 | 5.539048 | ACAAACACACTCTGACTACATACC | 58.461 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
290 | 474 | 7.307219 | GGAAACAAACACACTCTGACTACATAC | 60.307 | 40.741 | 0.00 | 0.00 | 0.00 | 2.39 |
291 | 475 | 6.704493 | GGAAACAAACACACTCTGACTACATA | 59.296 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
292 | 476 | 5.527582 | GGAAACAAACACACTCTGACTACAT | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
293 | 477 | 4.873827 | GGAAACAAACACACTCTGACTACA | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
294 | 478 | 4.873827 | TGGAAACAAACACACTCTGACTAC | 59.126 | 41.667 | 0.00 | 0.00 | 37.44 | 2.73 |
295 | 479 | 5.092554 | TGGAAACAAACACACTCTGACTA | 57.907 | 39.130 | 0.00 | 0.00 | 37.44 | 2.59 |
296 | 480 | 3.941483 | CTGGAAACAAACACACTCTGACT | 59.059 | 43.478 | 0.00 | 0.00 | 42.06 | 3.41 |
297 | 481 | 3.065371 | CCTGGAAACAAACACACTCTGAC | 59.935 | 47.826 | 0.00 | 0.00 | 42.06 | 3.51 |
304 | 488 | 2.818751 | AGTCCCTGGAAACAAACACA | 57.181 | 45.000 | 0.00 | 0.00 | 42.06 | 3.72 |
438 | 622 | 4.202367 | CCCGGGATAAGTCTCAATAAGCTT | 60.202 | 45.833 | 18.48 | 3.48 | 0.00 | 3.74 |
448 | 632 | 2.842936 | CCGGCCCGGGATAAGTCT | 60.843 | 66.667 | 29.31 | 0.00 | 44.15 | 3.24 |
666 | 985 | 3.119096 | GAACGAACTGAGGCGGGC | 61.119 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
667 | 986 | 1.738099 | CAGAACGAACTGAGGCGGG | 60.738 | 63.158 | 7.58 | 0.00 | 39.94 | 6.13 |
668 | 987 | 2.383527 | GCAGAACGAACTGAGGCGG | 61.384 | 63.158 | 15.12 | 0.00 | 39.94 | 6.13 |
669 | 988 | 2.383527 | GGCAGAACGAACTGAGGCG | 61.384 | 63.158 | 15.12 | 0.00 | 39.94 | 5.52 |
670 | 989 | 0.603975 | AAGGCAGAACGAACTGAGGC | 60.604 | 55.000 | 15.12 | 4.35 | 39.94 | 4.70 |
671 | 990 | 1.151668 | CAAGGCAGAACGAACTGAGG | 58.848 | 55.000 | 15.12 | 1.04 | 39.94 | 3.86 |
672 | 991 | 1.151668 | CCAAGGCAGAACGAACTGAG | 58.848 | 55.000 | 15.12 | 4.34 | 39.94 | 3.35 |
673 | 992 | 0.468226 | ACCAAGGCAGAACGAACTGA | 59.532 | 50.000 | 15.12 | 0.00 | 39.94 | 3.41 |
674 | 993 | 1.264288 | GAACCAAGGCAGAACGAACTG | 59.736 | 52.381 | 8.67 | 8.67 | 40.43 | 3.16 |
675 | 994 | 1.134220 | TGAACCAAGGCAGAACGAACT | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
676 | 995 | 1.305201 | TGAACCAAGGCAGAACGAAC | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
677 | 996 | 2.270352 | ATGAACCAAGGCAGAACGAA | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
678 | 997 | 1.879380 | CAATGAACCAAGGCAGAACGA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
679 | 998 | 1.666888 | GCAATGAACCAAGGCAGAACG | 60.667 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
680 | 999 | 1.340889 | TGCAATGAACCAAGGCAGAAC | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
695 | 1058 | 3.866379 | TTGGAGGCACCGCTGCAAT | 62.866 | 57.895 | 4.88 | 0.00 | 46.28 | 3.56 |
728 | 1091 | 1.260538 | TGCAACGAGGCTCAGGAGAT | 61.261 | 55.000 | 15.95 | 0.00 | 34.04 | 2.75 |
864 | 1227 | 6.313519 | TGCTTGTTTCATAAGTCCTAGGAT | 57.686 | 37.500 | 16.27 | 1.82 | 0.00 | 3.24 |
885 | 1248 | 2.270986 | CCAACAAGTGAGGCCCTGC | 61.271 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
894 | 1257 | 7.479980 | TGTTTTTCTAGACATTCCAACAAGTG | 58.520 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
895 | 1258 | 7.639113 | TGTTTTTCTAGACATTCCAACAAGT | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
896 | 1259 | 8.925161 | TTTGTTTTTCTAGACATTCCAACAAG | 57.075 | 30.769 | 0.00 | 0.00 | 35.09 | 3.16 |
911 | 1274 | 9.292195 | TCTCCGTTCCTAAATATTTGTTTTTCT | 57.708 | 29.630 | 11.05 | 0.00 | 0.00 | 2.52 |
917 | 1280 | 9.847224 | ACATAATCTCCGTTCCTAAATATTTGT | 57.153 | 29.630 | 11.05 | 0.00 | 0.00 | 2.83 |
935 | 1298 | 3.627395 | TTGGCGGTTGAGACATAATCT | 57.373 | 42.857 | 0.00 | 0.00 | 41.91 | 2.40 |
936 | 1299 | 3.627577 | ACATTGGCGGTTGAGACATAATC | 59.372 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
937 | 1300 | 3.378112 | CACATTGGCGGTTGAGACATAAT | 59.622 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
938 | 1301 | 2.746904 | CACATTGGCGGTTGAGACATAA | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
939 | 1302 | 2.355197 | CACATTGGCGGTTGAGACATA | 58.645 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
940 | 1303 | 1.167851 | CACATTGGCGGTTGAGACAT | 58.832 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
941 | 1304 | 1.514678 | GCACATTGGCGGTTGAGACA | 61.515 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
964 | 1327 | 5.428253 | CGCTATGGCCATGTATTTATACCT | 58.572 | 41.667 | 29.04 | 0.00 | 34.44 | 3.08 |
1381 | 1762 | 2.574955 | GGCCTCCACGTGACTGACT | 61.575 | 63.158 | 19.30 | 0.00 | 0.00 | 3.41 |
1387 | 1768 | 3.062466 | CTCTCGGCCTCCACGTGA | 61.062 | 66.667 | 19.30 | 2.03 | 33.54 | 4.35 |
1732 | 2134 | 3.842923 | CGGAGCGGGCTCATCAGT | 61.843 | 66.667 | 21.10 | 0.00 | 44.40 | 3.41 |
1980 | 2412 | 3.514706 | AGAATTACCAACATGCATGGCAA | 59.485 | 39.130 | 29.41 | 12.03 | 43.62 | 4.52 |
1981 | 2413 | 3.098377 | AGAATTACCAACATGCATGGCA | 58.902 | 40.909 | 29.41 | 2.29 | 44.86 | 4.92 |
1982 | 2414 | 3.119029 | ACAGAATTACCAACATGCATGGC | 60.119 | 43.478 | 29.41 | 7.88 | 41.89 | 4.40 |
1983 | 2415 | 4.675510 | GACAGAATTACCAACATGCATGG | 58.324 | 43.478 | 29.41 | 17.09 | 43.84 | 3.66 |
1984 | 2416 | 4.345288 | CGACAGAATTACCAACATGCATG | 58.655 | 43.478 | 25.09 | 25.09 | 0.00 | 4.06 |
1985 | 2417 | 3.181497 | GCGACAGAATTACCAACATGCAT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
1986 | 2418 | 2.161410 | GCGACAGAATTACCAACATGCA | 59.839 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
1987 | 2419 | 2.477863 | GGCGACAGAATTACCAACATGC | 60.478 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
1988 | 2420 | 3.009723 | AGGCGACAGAATTACCAACATG | 58.990 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
1989 | 2421 | 3.055094 | AGAGGCGACAGAATTACCAACAT | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
1990 | 2422 | 2.301870 | AGAGGCGACAGAATTACCAACA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
1991 | 2423 | 2.673368 | CAGAGGCGACAGAATTACCAAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1992 | 2424 | 2.935238 | GCAGAGGCGACAGAATTACCAA | 60.935 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2010 | 2442 | 2.433145 | ATGGACGACACGCAGCAG | 60.433 | 61.111 | 0.00 | 0.00 | 0.00 | 4.24 |
2070 | 2502 | 8.820933 | CACTGGTCACTGTTTACAATATAGATG | 58.179 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2101 | 2541 | 3.016031 | TGCACGCATAGATCCAAACAAT | 58.984 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
2120 | 2560 | 4.852104 | CGTCCGTACATATACTCAATCTGC | 59.148 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
2201 | 2645 | 8.935844 | CACAATAGTATAACAAGCACTCTCAAA | 58.064 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2203 | 2647 | 7.611770 | ACACAATAGTATAACAAGCACTCTCA | 58.388 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
2234 | 3159 | 2.888594 | ACAGGACACGCATACATGTAC | 58.111 | 47.619 | 7.96 | 0.00 | 0.00 | 2.90 |
2388 | 3598 | 8.214721 | AGCTTTCCTAATATCAAAACTAGTGC | 57.785 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
2415 | 3631 | 3.566351 | TCTATCTGAATCGAAGAGCCCA | 58.434 | 45.455 | 0.00 | 0.00 | 43.63 | 5.36 |
2512 | 3732 | 5.300969 | TGCAAGATAAAAGTCTCATGCAC | 57.699 | 39.130 | 0.00 | 0.00 | 37.17 | 4.57 |
2526 | 3746 | 6.737720 | ATCACTTAGGAGTCATGCAAGATA | 57.262 | 37.500 | 0.00 | 0.00 | 32.54 | 1.98 |
2724 | 3958 | 5.823312 | GGGGGTGAGAAGAAAGGTAAAATA | 58.177 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2745 | 3979 | 1.266178 | GGAAGGTTGGACAAATGGGG | 58.734 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2749 | 3983 | 7.353525 | TCATATACATGGAAGGTTGGACAAAT | 58.646 | 34.615 | 0.00 | 0.00 | 32.61 | 2.32 |
2752 | 3986 | 5.966853 | TCATATACATGGAAGGTTGGACA | 57.033 | 39.130 | 0.00 | 0.00 | 32.61 | 4.02 |
2853 | 4087 | 5.258051 | TCAAATTCTGCCCGTAAATTACCT | 58.742 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
2854 | 4088 | 5.570234 | TCAAATTCTGCCCGTAAATTACC | 57.430 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
2861 | 4095 | 2.026729 | TGTCCATCAAATTCTGCCCGTA | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2906 | 4140 | 9.243105 | ACATTAGCTTGTGATTTACCTGTTAAT | 57.757 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2930 | 4164 | 7.333423 | GCAACGGGATATAAATATTCTAGCACA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 4.57 |
2933 | 4167 | 7.843490 | TGCAACGGGATATAAATATTCTAGC | 57.157 | 36.000 | 0.00 | 0.00 | 0.00 | 3.42 |
3004 | 4238 | 5.843019 | ACTCCCTCCTTGTTTTCTGAATA | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.