Multiple sequence alignment - TraesCS5B01G306600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G306600 chr5B 100.000 4884 0 0 1 4884 490236058 490231175 0.000000e+00 9020.0
1 TraesCS5B01G306600 chr5B 99.636 549 1 1 1337 1885 490233212 490232665 0.000000e+00 1002.0
2 TraesCS5B01G306600 chr5B 99.636 549 1 1 2847 3394 490234722 490234174 0.000000e+00 1002.0
3 TraesCS5B01G306600 chr5B 83.962 530 62 11 3392 3906 490611720 490611199 2.040000e-133 486.0
4 TraesCS5B01G306600 chr5B 79.921 508 72 14 3392 3887 490359118 490358629 3.620000e-91 346.0
5 TraesCS5B01G306600 chr5B 87.225 227 20 3 1038 1264 490304616 490304399 2.920000e-62 250.0
6 TraesCS5B01G306600 chr5B 77.436 195 38 5 4311 4503 9504612 9504802 1.440000e-20 111.0
7 TraesCS5B01G306600 chr5B 94.231 52 1 2 3014 3064 315326918 315326868 1.460000e-10 78.7
8 TraesCS5B01G306600 chr5B 94.231 52 1 2 1504 1554 315326918 315326868 1.460000e-10 78.7
9 TraesCS5B01G306600 chr5D 91.636 1339 79 15 1 1336 408650678 408649370 0.000000e+00 1821.0
10 TraesCS5B01G306600 chr5D 92.505 974 43 17 3893 4860 408617447 408616498 0.000000e+00 1367.0
11 TraesCS5B01G306600 chr5D 97.674 516 9 2 3393 3905 408649375 408648860 0.000000e+00 883.0
12 TraesCS5B01G306600 chr5D 88.496 452 43 4 3392 3840 408769764 408769319 5.560000e-149 538.0
13 TraesCS5B01G306600 chr5D 88.754 329 37 0 1008 1336 408666643 408666315 2.120000e-108 403.0
14 TraesCS5B01G306600 chr5D 79.406 505 74 12 3392 3884 408659425 408658939 3.640000e-86 329.0
15 TraesCS5B01G306600 chr5D 78.937 508 77 11 3392 3887 408742117 408741628 7.890000e-83 318.0
16 TraesCS5B01G306600 chr5D 80.755 265 30 9 4529 4774 408651928 408651666 2.320000e-43 187.0
17 TraesCS5B01G306600 chr5D 97.333 75 2 0 3319 3393 459688242 459688316 1.430000e-25 128.0
18 TraesCS5B01G306600 chr5D 86.087 115 8 6 1337 1446 459687698 459687809 3.090000e-22 117.0
19 TraesCS5B01G306600 chr5D 84.043 94 11 4 315 406 393737178 393737087 2.420000e-13 87.9
20 TraesCS5B01G306600 chrUn 90.829 1254 70 23 1810 3030 205545915 205544674 0.000000e+00 1637.0
21 TraesCS5B01G306600 chrUn 90.829 1254 70 23 1810 3030 205550745 205549504 0.000000e+00 1637.0
22 TraesCS5B01G306600 chrUn 90.742 1253 73 21 1810 3030 205553965 205552724 0.000000e+00 1631.0
23 TraesCS5B01G306600 chrUn 90.750 1254 71 23 1810 3030 205560459 205559218 0.000000e+00 1631.0
24 TraesCS5B01G306600 chrUn 90.590 1254 73 23 1810 3030 205541085 205539844 0.000000e+00 1620.0
25 TraesCS5B01G306600 chrUn 90.590 1254 73 23 1810 3030 205565288 205564047 0.000000e+00 1620.0
26 TraesCS5B01G306600 chrUn 88.000 150 17 1 475 624 93028583 93028731 5.020000e-40 176.0
27 TraesCS5B01G306600 chrUn 84.706 170 24 2 452 620 12884524 12884356 8.410000e-38 169.0
28 TraesCS5B01G306600 chrUn 86.667 150 19 1 475 624 50135799 50135651 1.090000e-36 165.0
29 TraesCS5B01G306600 chrUn 84.694 98 13 2 467 562 338513414 338513511 4.020000e-16 97.1
30 TraesCS5B01G306600 chr7D 90.750 1254 71 23 1810 3030 510955067 510956308 0.000000e+00 1631.0
31 TraesCS5B01G306600 chr7D 90.750 1254 69 24 1810 3030 510956666 510957905 0.000000e+00 1629.0
32 TraesCS5B01G306600 chr7D 81.312 503 69 15 129 625 58995024 58994541 7.670000e-103 385.0
33 TraesCS5B01G306600 chr7D 79.499 439 69 12 190 624 165487460 165487039 4.780000e-75 292.0
34 TraesCS5B01G306600 chr7D 89.005 191 20 1 625 815 201977213 201977024 8.170000e-58 235.0
35 TraesCS5B01G306600 chr7D 97.333 75 2 0 3319 3393 531986315 531986389 1.430000e-25 128.0
36 TraesCS5B01G306600 chr7D 85.217 115 9 4 1337 1446 531985762 531985873 1.440000e-20 111.0
37 TraesCS5B01G306600 chr3D 90.750 1254 71 23 1810 3030 557591070 557592311 0.000000e+00 1631.0
38 TraesCS5B01G306600 chr3D 90.670 1254 72 23 1810 3030 557595900 557597141 0.000000e+00 1626.0
39 TraesCS5B01G306600 chr3D 90.510 1254 74 23 1810 3030 557597510 557598751 0.000000e+00 1615.0
40 TraesCS5B01G306600 chr3D 77.282 493 59 22 137 624 36573078 36572634 1.760000e-59 241.0
41 TraesCS5B01G306600 chr3D 86.301 219 28 2 413 630 461374514 461374297 2.270000e-58 237.0
42 TraesCS5B01G306600 chr3D 77.828 221 40 8 312 527 32288152 32288368 1.430000e-25 128.0
43 TraesCS5B01G306600 chr3D 79.167 120 20 4 4341 4459 604669248 604669363 1.460000e-10 78.7
44 TraesCS5B01G306600 chr2D 91.241 1233 51 20 1811 2992 602177967 602176741 0.000000e+00 1626.0
45 TraesCS5B01G306600 chr2D 79.600 500 68 15 129 626 645179739 645179272 1.310000e-85 327.0
46 TraesCS5B01G306600 chr2D 79.452 438 62 14 188 625 84744980 84744571 8.000000e-73 285.0
47 TraesCS5B01G306600 chr3A 90.049 1226 79 18 1841 3032 705270064 705271280 0.000000e+00 1548.0
48 TraesCS5B01G306600 chr3A 80.180 111 18 3 4350 4459 734786104 734786211 4.050000e-11 80.5
49 TraesCS5B01G306600 chr3A 81.188 101 13 5 308 406 696279816 696279720 5.240000e-10 76.8
50 TraesCS5B01G306600 chr3A 80.000 100 14 4 4367 4464 71809223 71809318 8.770000e-08 69.4
51 TraesCS5B01G306600 chr3A 80.000 100 14 4 4367 4464 71863274 71863179 8.770000e-08 69.4
52 TraesCS5B01G306600 chr7B 93.640 566 25 7 2847 3402 695136958 695136394 0.000000e+00 835.0
53 TraesCS5B01G306600 chr7B 93.772 562 24 7 1332 1884 695136962 695136403 0.000000e+00 833.0
54 TraesCS5B01G306600 chr7B 79.405 437 56 21 190 624 691041223 691041627 1.340000e-70 278.0
55 TraesCS5B01G306600 chr7B 93.671 79 5 0 3316 3394 586937776 586937698 8.590000e-23 119.0
56 TraesCS5B01G306600 chr7A 89.545 440 20 12 1442 1881 11346318 11346731 7.200000e-148 534.0
57 TraesCS5B01G306600 chr7A 89.522 439 21 8 2952 3390 11346318 11346731 2.590000e-147 532.0
58 TraesCS5B01G306600 chr7A 96.000 75 3 0 3319 3393 29805130 29805056 6.640000e-24 122.0
59 TraesCS5B01G306600 chr7A 94.231 52 2 1 3014 3064 79742059 79742008 1.460000e-10 78.7
60 TraesCS5B01G306600 chr7A 94.231 52 2 1 1504 1554 79742059 79742008 1.460000e-10 78.7
61 TraesCS5B01G306600 chr5A 87.611 452 47 4 3392 3840 519693610 519693165 2.610000e-142 516.0
62 TraesCS5B01G306600 chr5A 84.528 530 59 9 3392 3906 518412176 518412697 2.030000e-138 503.0
63 TraesCS5B01G306600 chr5A 78.543 508 79 12 3392 3887 515495730 515495241 1.710000e-79 307.0
64 TraesCS5B01G306600 chr5A 80.533 375 51 15 4218 4586 514806753 514806395 8.060000e-68 268.0
65 TraesCS5B01G306600 chr5A 88.119 202 18 6 4648 4849 514806041 514805846 8.170000e-58 235.0
66 TraesCS5B01G306600 chr5A 83.459 266 29 8 3896 4161 514807020 514806770 2.940000e-57 233.0
67 TraesCS5B01G306600 chr5A 87.662 154 13 5 1639 1789 603430716 603430566 1.810000e-39 174.0
68 TraesCS5B01G306600 chr5A 87.013 154 14 5 3148 3298 603430716 603430566 8.410000e-38 169.0
69 TraesCS5B01G306600 chr5A 87.879 99 9 3 3317 3414 603430512 603430416 4.000000e-21 113.0
70 TraesCS5B01G306600 chr1A 96.471 255 9 0 3003 3257 3643096 3642842 5.840000e-114 422.0
71 TraesCS5B01G306600 chr1A 96.484 256 8 1 1493 1748 3643096 3642842 5.840000e-114 422.0
72 TraesCS5B01G306600 chr1A 92.308 169 8 2 1337 1500 3652083 3651915 8.170000e-58 235.0
73 TraesCS5B01G306600 chr1A 94.231 52 2 1 1504 1554 572743889 572743940 1.460000e-10 78.7
74 TraesCS5B01G306600 chr1A 94.231 52 2 1 3014 3064 572743889 572743940 1.460000e-10 78.7
75 TraesCS5B01G306600 chr1A 75.124 201 24 24 1337 1520 4837289 4837480 2.440000e-08 71.3
76 TraesCS5B01G306600 chr4A 79.559 499 71 19 129 625 676494802 676494333 1.310000e-85 327.0
77 TraesCS5B01G306600 chr4A 80.420 143 20 6 4353 4491 580297715 580297853 8.650000e-18 102.0
78 TraesCS5B01G306600 chr1D 84.387 269 37 4 360 625 141898600 141898334 4.850000e-65 259.0
79 TraesCS5B01G306600 chr1D 84.959 246 33 4 382 626 424909781 424909539 3.780000e-61 246.0
80 TraesCS5B01G306600 chr1D 75.697 502 56 31 125 625 84806250 84806686 1.790000e-44 191.0
81 TraesCS5B01G306600 chr1D 91.429 70 5 1 469 538 314249332 314249400 1.450000e-15 95.3
82 TraesCS5B01G306600 chr1D 90.909 66 6 0 469 534 225375941 225375876 6.730000e-14 89.8
83 TraesCS5B01G306600 chr1D 90.141 71 4 3 469 538 374272615 374272547 6.730000e-14 89.8
84 TraesCS5B01G306600 chr1D 81.250 112 17 3 297 406 377030420 377030529 2.420000e-13 87.9
85 TraesCS5B01G306600 chr1D 90.909 55 5 0 292 346 424909827 424909773 1.890000e-09 75.0
86 TraesCS5B01G306600 chr6B 87.006 177 13 7 1333 1502 56010662 56010835 1.790000e-44 191.0
87 TraesCS5B01G306600 chr6B 97.368 76 2 0 3319 3394 153561888 153561963 3.970000e-26 130.0
88 TraesCS5B01G306600 chr6B 94.118 51 2 1 1504 1554 29887880 29887929 5.240000e-10 76.8
89 TraesCS5B01G306600 chr6B 94.118 51 2 1 3014 3064 29887880 29887929 5.240000e-10 76.8
90 TraesCS5B01G306600 chr2B 85.246 183 16 8 1627 1803 919819 919642 1.400000e-40 178.0
91 TraesCS5B01G306600 chr2B 84.699 183 17 8 3136 3312 919819 919642 6.500000e-39 172.0
92 TraesCS5B01G306600 chr4D 87.000 100 12 1 467 565 487202275 487202176 1.440000e-20 111.0
93 TraesCS5B01G306600 chr4D 85.714 105 13 2 4295 4397 352541226 352541330 5.170000e-20 110.0
94 TraesCS5B01G306600 chr4D 90.909 77 6 1 467 543 87952873 87952948 8.650000e-18 102.0
95 TraesCS5B01G306600 chr6D 92.424 66 5 0 469 534 201103588 201103653 1.450000e-15 95.3
96 TraesCS5B01G306600 chr6D 91.429 70 5 1 469 538 203212468 203212400 1.450000e-15 95.3
97 TraesCS5B01G306600 chr3B 80.328 122 15 6 4341 4459 812340196 812340311 3.130000e-12 84.2
98 TraesCS5B01G306600 chr2A 94.231 52 2 1 3014 3064 28694294 28694243 1.460000e-10 78.7
99 TraesCS5B01G306600 chr2A 94.231 52 2 1 1504 1554 28694294 28694243 1.460000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G306600 chr5B 490231175 490236058 4883 True 3674.666667 9020 99.757333 1 4884 3 chr5B.!!$R5 4883
1 TraesCS5B01G306600 chr5B 490611199 490611720 521 True 486.000000 486 83.962000 3392 3906 1 chr5B.!!$R3 514
2 TraesCS5B01G306600 chr5D 408616498 408617447 949 True 1367.000000 1367 92.505000 3893 4860 1 chr5D.!!$R2 967
3 TraesCS5B01G306600 chr5D 408648860 408651928 3068 True 963.666667 1821 90.021667 1 4774 3 chr5D.!!$R7 4773
4 TraesCS5B01G306600 chrUn 205539844 205553965 14121 True 1631.250000 1637 90.747500 1810 3030 4 chrUn.!!$R3 1220
5 TraesCS5B01G306600 chrUn 205559218 205565288 6070 True 1625.500000 1631 90.670000 1810 3030 2 chrUn.!!$R4 1220
6 TraesCS5B01G306600 chr7D 510955067 510957905 2838 False 1630.000000 1631 90.750000 1810 3030 2 chr7D.!!$F1 1220
7 TraesCS5B01G306600 chr3D 557591070 557598751 7681 False 1624.000000 1631 90.643333 1810 3030 3 chr3D.!!$F3 1220
8 TraesCS5B01G306600 chr2D 602176741 602177967 1226 True 1626.000000 1626 91.241000 1811 2992 1 chr2D.!!$R2 1181
9 TraesCS5B01G306600 chr3A 705270064 705271280 1216 False 1548.000000 1548 90.049000 1841 3032 1 chr3A.!!$F2 1191
10 TraesCS5B01G306600 chr7B 695136394 695136962 568 True 834.000000 835 93.706000 1332 3402 2 chr7B.!!$R2 2070
11 TraesCS5B01G306600 chr5A 518412176 518412697 521 False 503.000000 503 84.528000 3392 3906 1 chr5A.!!$F1 514
12 TraesCS5B01G306600 chr5A 514805846 514807020 1174 True 245.333333 268 84.037000 3896 4849 3 chr5A.!!$R3 953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 1668 0.244994 CATCCCTCTAGATTCGGCCG 59.755 60.0 22.12 22.12 0.0 6.13 F
1520 2780 0.322322 CCCACGCACTAACCCACTAA 59.678 55.0 0.00 0.00 0.0 2.24 F
3012 17227 0.034896 ATCACTCGACCAACACACCC 59.965 55.0 0.00 0.00 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 8242 0.250727 GCCAGCAACTACAACCAGGA 60.251 55.0 0.0 0.0 0.0 3.86 R
3049 17264 0.038159 AGAAGTGGAGTAGTGCGTGC 60.038 55.0 0.0 0.0 0.0 5.34 R
4545 25774 0.178891 AACTTGCTCCCTCTCCTGGA 60.179 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 1279 5.920840 TCTCACGTTTCATCTTGTAAGACTG 59.079 40.000 0.00 0.00 37.98 3.51
55 1308 2.248280 AATGCCACGTGTACTTCACA 57.752 45.000 15.65 1.33 46.44 3.58
67 1320 5.082059 GTGTACTTCACAAATCTTGATGCG 58.918 41.667 0.00 0.00 45.51 4.73
77 1330 2.479566 TCTTGATGCGCCTCTTCTTT 57.520 45.000 13.93 0.00 0.00 2.52
84 1337 1.177401 GCGCCTCTTCTTTCCCAATT 58.823 50.000 0.00 0.00 0.00 2.32
93 1346 3.739401 TCTTTCCCAATTCTCCTTCCC 57.261 47.619 0.00 0.00 0.00 3.97
97 1350 1.989586 TCCCAATTCTCCTTCCCGAAA 59.010 47.619 0.00 0.00 0.00 3.46
114 1367 0.779997 AAATTGACACCTCCAGCCCT 59.220 50.000 0.00 0.00 0.00 5.19
134 1387 5.548406 CCCTATGAATCCTAAACGGGTTAG 58.452 45.833 5.82 5.82 35.81 2.34
135 1388 5.306160 CCCTATGAATCCTAAACGGGTTAGA 59.694 44.000 14.30 1.40 41.70 2.10
141 1394 5.588958 ATCCTAAACGGGTTAGACTACAC 57.411 43.478 14.30 0.00 41.70 2.90
142 1395 4.406456 TCCTAAACGGGTTAGACTACACA 58.594 43.478 14.30 0.00 41.70 3.72
150 1403 3.693085 GGGTTAGACTACACATCAGTCGA 59.307 47.826 0.00 0.00 45.76 4.20
177 1430 2.758736 TTTGAAATTGGGCCAATCGG 57.241 45.000 30.79 0.00 32.43 4.18
215 1468 0.250858 TCCATATCCAATGGCGCCTG 60.251 55.000 29.70 18.72 39.01 4.85
229 1482 0.744771 CGCCTGGCCTTTCTTCTACC 60.745 60.000 14.12 0.00 0.00 3.18
251 1504 4.506448 CCTCCAGCTTTTCTCCTTCTTCTT 60.506 45.833 0.00 0.00 0.00 2.52
256 1509 5.472820 CAGCTTTTCTCCTTCTTCTTCACAT 59.527 40.000 0.00 0.00 0.00 3.21
262 1516 1.446907 CTTCTTCTTCACATGCCGCT 58.553 50.000 0.00 0.00 0.00 5.52
293 1547 4.373771 GAACCACCTTCGACCACC 57.626 61.111 0.00 0.00 0.00 4.61
294 1548 1.448497 GAACCACCTTCGACCACCA 59.552 57.895 0.00 0.00 0.00 4.17
295 1549 0.883370 GAACCACCTTCGACCACCAC 60.883 60.000 0.00 0.00 0.00 4.16
296 1550 2.032071 CCACCTTCGACCACCACC 59.968 66.667 0.00 0.00 0.00 4.61
297 1551 2.516888 CCACCTTCGACCACCACCT 61.517 63.158 0.00 0.00 0.00 4.00
298 1552 1.450211 CACCTTCGACCACCACCTT 59.550 57.895 0.00 0.00 0.00 3.50
299 1553 0.602905 CACCTTCGACCACCACCTTC 60.603 60.000 0.00 0.00 0.00 3.46
300 1554 1.374252 CCTTCGACCACCACCTTCG 60.374 63.158 0.00 0.00 0.00 3.79
301 1555 1.663739 CTTCGACCACCACCTTCGA 59.336 57.895 0.00 0.00 39.91 3.71
302 1556 0.666577 CTTCGACCACCACCTTCGAC 60.667 60.000 0.00 0.00 41.28 4.20
303 1557 2.048503 CGACCACCACCTTCGACC 60.049 66.667 0.00 0.00 34.62 4.79
304 1558 2.863346 CGACCACCACCTTCGACCA 61.863 63.158 0.00 0.00 34.62 4.02
305 1559 1.677552 GACCACCACCTTCGACCAT 59.322 57.895 0.00 0.00 0.00 3.55
381 1635 1.305046 CCCCCACCGTCTGTCTAGT 60.305 63.158 0.00 0.00 0.00 2.57
386 1640 1.303074 ACCGTCTGTCTAGTCGCCA 60.303 57.895 0.00 0.00 34.77 5.69
390 1644 0.966370 GTCTGTCTAGTCGCCACCCT 60.966 60.000 0.00 0.00 0.00 4.34
407 1661 0.252012 CCTCGGCCATCCCTCTAGAT 60.252 60.000 2.24 0.00 0.00 1.98
408 1662 1.638529 CTCGGCCATCCCTCTAGATT 58.361 55.000 2.24 0.00 0.00 2.40
411 1665 0.610687 GGCCATCCCTCTAGATTCGG 59.389 60.000 0.00 0.00 0.00 4.30
414 1668 0.244994 CATCCCTCTAGATTCGGCCG 59.755 60.000 22.12 22.12 0.00 6.13
515 1769 6.613153 AAGATAGATAATGGGGTAGCACTC 57.387 41.667 0.00 0.00 0.00 3.51
543 1797 2.846950 CCCCTTCCTTCTCCTTCCTTA 58.153 52.381 0.00 0.00 0.00 2.69
579 1833 1.067846 GGCCAACCCTTGAAAATCGAC 60.068 52.381 0.00 0.00 0.00 4.20
582 1836 2.228822 CCAACCCTTGAAAATCGACTGG 59.771 50.000 0.00 0.00 0.00 4.00
583 1837 2.884639 CAACCCTTGAAAATCGACTGGT 59.115 45.455 0.00 0.00 0.00 4.00
588 1842 2.472695 TGAAAATCGACTGGTCCCTG 57.527 50.000 0.00 0.00 0.00 4.45
637 1891 6.613153 AGCTAAACTGATCCTAAACAGTCT 57.387 37.500 0.00 0.00 44.94 3.24
693 1947 2.159142 GGCACTACGGAAAAGCTAGCTA 60.159 50.000 19.70 0.00 0.00 3.32
727 1981 4.481112 GCACGCCGGATTGCTTGG 62.481 66.667 17.97 0.00 35.74 3.61
728 1982 3.814268 CACGCCGGATTGCTTGGG 61.814 66.667 5.05 0.00 0.00 4.12
782 2036 3.123804 CGGAGACAAAATACAGATCGGG 58.876 50.000 0.00 0.00 0.00 5.14
795 2049 4.318332 ACAGATCGGGCATATACACATTG 58.682 43.478 0.00 0.00 0.00 2.82
807 2061 7.010552 GGCATATACACATTGGAGATATTCGAC 59.989 40.741 0.00 0.00 0.00 4.20
840 2094 1.339055 CCGCCAATCTCTTTGTCTCCA 60.339 52.381 0.00 0.00 33.15 3.86
851 2105 0.895100 TTGTCTCCATTGCACCAGGC 60.895 55.000 0.00 0.00 45.13 4.85
853 2107 2.233566 TCTCCATTGCACCAGGCCT 61.234 57.895 0.00 0.00 43.89 5.19
870 2124 5.311265 CAGGCCTATAGATCTTTTGCATGA 58.689 41.667 3.98 0.00 31.37 3.07
871 2125 5.411977 CAGGCCTATAGATCTTTTGCATGAG 59.588 44.000 3.98 0.00 31.37 2.90
872 2126 5.309020 AGGCCTATAGATCTTTTGCATGAGA 59.691 40.000 1.29 2.44 0.00 3.27
873 2127 5.411053 GGCCTATAGATCTTTTGCATGAGAC 59.589 44.000 0.00 0.00 0.00 3.36
874 2128 5.994054 GCCTATAGATCTTTTGCATGAGACA 59.006 40.000 0.00 0.00 0.00 3.41
875 2129 6.147492 GCCTATAGATCTTTTGCATGAGACAG 59.853 42.308 0.00 0.00 0.00 3.51
876 2130 7.440198 CCTATAGATCTTTTGCATGAGACAGA 58.560 38.462 0.00 0.00 0.00 3.41
911 2166 1.405661 GCTTGGCACACTAGTAGACCC 60.406 57.143 3.59 0.00 39.29 4.46
944 2199 0.383231 AGGTAATACCGACGCTTCCG 59.617 55.000 3.47 0.00 44.90 4.30
1005 2260 2.360165 GGGAGCAGCAAAACATATGGAG 59.640 50.000 7.80 0.00 0.00 3.86
1041 2296 1.372087 GCTCATCCTTCTTGCCACCG 61.372 60.000 0.00 0.00 0.00 4.94
1081 2336 2.201022 ACTGCGGACGAGAACCACT 61.201 57.895 0.00 0.00 0.00 4.00
1119 2374 4.458829 TCCTGCGAGGTCCCCGAT 62.459 66.667 0.00 0.00 36.53 4.18
1177 2432 1.956159 GCGAGGAGGGAGACTACTTGT 60.956 57.143 0.00 0.00 41.79 3.16
1193 2448 4.106925 GTGGCCTGAGGGGAGCTG 62.107 72.222 3.32 0.00 37.23 4.24
1442 2700 6.707440 TTGCCACTTTTCTGTATTTCTTCA 57.293 33.333 0.00 0.00 0.00 3.02
1450 2710 8.956426 ACTTTTCTGTATTTCTTCACACTGAAA 58.044 29.630 0.00 0.00 35.73 2.69
1466 2726 5.474532 ACACTGAAACACAATGCAGATACAT 59.525 36.000 0.00 0.00 32.86 2.29
1491 2751 5.734855 GCTTTAATAGCCAAATCACTCGA 57.265 39.130 0.00 0.00 44.48 4.04
1520 2780 0.322322 CCCACGCACTAACCCACTAA 59.678 55.000 0.00 0.00 0.00 2.24
1571 2834 4.824166 CTTCTGCATGCACGCGCC 62.824 66.667 18.46 0.00 37.32 6.53
1618 2881 2.936993 GCTTGATCCGCTTCTTTCTCCA 60.937 50.000 0.00 0.00 0.00 3.86
1619 2882 3.338249 CTTGATCCGCTTCTTTCTCCAA 58.662 45.455 0.00 0.00 0.00 3.53
1620 2883 2.977914 TGATCCGCTTCTTTCTCCAAG 58.022 47.619 0.00 0.00 0.00 3.61
1621 2884 1.668237 GATCCGCTTCTTTCTCCAAGC 59.332 52.381 0.00 0.00 41.46 4.01
1670 2933 1.717032 TCCCAAGTCTGTAGCACACT 58.283 50.000 0.00 0.00 0.00 3.55
1706 2969 0.738063 AACGACACACTTGACGCACA 60.738 50.000 0.00 0.00 43.52 4.57
1710 2973 1.457303 GACACACTTGACGCACATCTC 59.543 52.381 0.00 0.00 0.00 2.75
1775 3038 4.314440 TCGGCCGCTGCAACTCTT 62.314 61.111 23.51 0.00 40.13 2.85
1824 3087 8.796475 ACTAAAGTTTCAACTACATGCATGAAT 58.204 29.630 32.75 14.25 38.57 2.57
1897 3163 6.652205 AACTCTATCAATCACCCCCTTAAA 57.348 37.500 0.00 0.00 0.00 1.52
1914 3180 7.204604 CCCCTTAAACTTGTTGTCGTTTATTT 58.795 34.615 0.00 0.00 36.02 1.40
2069 3336 2.478894 CACCTTGCGTATGTCGAAGTTT 59.521 45.455 0.00 0.00 42.86 2.66
2170 8268 3.318384 TAGTTGCTGGCGCCCTCA 61.318 61.111 26.77 18.99 34.43 3.86
2220 8318 0.480252 AGCCTTCCCACAAGCTCTTT 59.520 50.000 0.00 0.00 0.00 2.52
2248 8346 7.004086 TGGACATGGTTTTAAGATCAAGAAGT 58.996 34.615 0.00 0.00 0.00 3.01
2322 8420 2.408050 CTTCTTGACGACCTTCACCTG 58.592 52.381 0.00 0.00 0.00 4.00
2456 10164 3.720601 TCTGCGCCTTGGCCTCAT 61.721 61.111 4.18 0.00 0.00 2.90
2524 10232 2.203084 TTTGCCGTCGCCTTCACA 60.203 55.556 0.00 0.00 0.00 3.58
2881 17051 3.119637 GGAGGAAGAAGAAGACTCTCACG 60.120 52.174 0.00 0.00 0.00 4.35
2882 17052 3.754323 GAGGAAGAAGAAGACTCTCACGA 59.246 47.826 0.00 0.00 0.00 4.35
2885 17055 4.022676 GGAAGAAGAAGACTCTCACGAACT 60.023 45.833 0.00 0.00 0.00 3.01
2886 17056 4.497473 AGAAGAAGACTCTCACGAACTG 57.503 45.455 0.00 0.00 0.00 3.16
2890 17060 3.254657 AGAAGACTCTCACGAACTGAAGG 59.745 47.826 0.00 0.00 0.00 3.46
2899 17069 5.048643 TCTCACGAACTGAAGGTAGAAGAAG 60.049 44.000 0.00 0.00 0.00 2.85
2905 17115 3.898123 ACTGAAGGTAGAAGAAGAGCACA 59.102 43.478 0.00 0.00 0.00 4.57
2910 17120 3.006323 AGGTAGAAGAAGAGCACACACAG 59.994 47.826 0.00 0.00 0.00 3.66
2942 17153 3.613737 CACACAACTTTGCCACTTTTCTG 59.386 43.478 0.00 0.00 0.00 3.02
2952 17164 6.707440 TTGCCACTTTTCTGTATTTCTTCA 57.293 33.333 0.00 0.00 0.00 3.02
2956 17168 6.238759 GCCACTTTTCTGTATTTCTTCACACT 60.239 38.462 0.00 0.00 0.00 3.55
2970 17183 3.696281 TCACACTGAAACACAATGCAG 57.304 42.857 0.00 0.00 34.65 4.41
2983 17198 3.131577 CACAATGCAGATACATGGGCTTT 59.868 43.478 0.00 0.00 0.00 3.51
3001 17216 5.734855 GCTTTAATAGCCAAATCACTCGA 57.265 39.130 0.00 0.00 44.48 4.04
3002 17217 5.502606 GCTTTAATAGCCAAATCACTCGAC 58.497 41.667 0.00 0.00 44.48 4.20
3003 17218 5.504173 GCTTTAATAGCCAAATCACTCGACC 60.504 44.000 0.00 0.00 44.48 4.79
3005 17220 3.627395 ATAGCCAAATCACTCGACCAA 57.373 42.857 0.00 0.00 0.00 3.67
3011 17226 1.878953 AATCACTCGACCAACACACC 58.121 50.000 0.00 0.00 0.00 4.16
3012 17227 0.034896 ATCACTCGACCAACACACCC 59.965 55.000 0.00 0.00 0.00 4.61
3016 17231 2.970324 CGACCAACACACCCCACG 60.970 66.667 0.00 0.00 0.00 4.94
3020 17235 2.515991 CAACACACCCCACGCACT 60.516 61.111 0.00 0.00 0.00 4.40
3021 17236 1.227704 CAACACACCCCACGCACTA 60.228 57.895 0.00 0.00 0.00 2.74
3033 17248 1.050204 ACGCACTAACCCACTAACCA 58.950 50.000 0.00 0.00 0.00 3.67
3037 17252 3.483421 GCACTAACCCACTAACCAACTT 58.517 45.455 0.00 0.00 0.00 2.66
3041 17256 5.012354 CACTAACCCACTAACCAACTTCCTA 59.988 44.000 0.00 0.00 0.00 2.94
3044 17259 2.572104 CCCACTAACCAACTTCCTAGCT 59.428 50.000 0.00 0.00 0.00 3.32
3045 17260 3.600388 CCACTAACCAACTTCCTAGCTG 58.400 50.000 0.00 0.00 0.00 4.24
3046 17261 3.003480 CACTAACCAACTTCCTAGCTGC 58.997 50.000 0.00 0.00 0.00 5.25
3047 17262 2.637872 ACTAACCAACTTCCTAGCTGCA 59.362 45.455 1.02 0.00 0.00 4.41
3048 17263 2.887151 AACCAACTTCCTAGCTGCAT 57.113 45.000 1.02 0.00 0.00 3.96
3049 17264 2.119801 ACCAACTTCCTAGCTGCATG 57.880 50.000 1.02 0.00 0.00 4.06
3050 17265 0.737219 CCAACTTCCTAGCTGCATGC 59.263 55.000 11.82 11.82 43.29 4.06
3051 17266 1.456296 CAACTTCCTAGCTGCATGCA 58.544 50.000 21.29 21.29 45.94 3.96
3052 17267 1.131883 CAACTTCCTAGCTGCATGCAC 59.868 52.381 18.46 13.93 45.94 4.57
3053 17268 0.742281 ACTTCCTAGCTGCATGCACG 60.742 55.000 18.46 14.14 45.94 5.34
3054 17269 2.044832 CTTCCTAGCTGCATGCACGC 62.045 60.000 25.32 25.32 45.94 5.34
3057 17272 2.046988 TAGCTGCATGCACGCACT 60.047 55.556 30.47 21.62 45.94 4.40
3058 17273 0.807275 CTAGCTGCATGCACGCACTA 60.807 55.000 30.47 21.58 45.94 2.74
3060 17275 2.393768 GCTGCATGCACGCACTACT 61.394 57.895 26.77 0.00 42.31 2.57
3061 17276 1.712081 CTGCATGCACGCACTACTC 59.288 57.895 18.46 0.00 36.86 2.59
3062 17277 1.699656 CTGCATGCACGCACTACTCC 61.700 60.000 18.46 0.00 36.86 3.85
3063 17278 1.741401 GCATGCACGCACTACTCCA 60.741 57.895 14.21 0.00 0.00 3.86
3065 17280 0.390340 CATGCACGCACTACTCCACT 60.390 55.000 0.00 0.00 0.00 4.00
3066 17281 0.321671 ATGCACGCACTACTCCACTT 59.678 50.000 0.00 0.00 0.00 3.16
3067 17282 0.319555 TGCACGCACTACTCCACTTC 60.320 55.000 0.00 0.00 0.00 3.01
3068 17283 0.038159 GCACGCACTACTCCACTTCT 60.038 55.000 0.00 0.00 0.00 2.85
3069 17284 1.702886 CACGCACTACTCCACTTCTG 58.297 55.000 0.00 0.00 0.00 3.02
3070 17285 0.038159 ACGCACTACTCCACTTCTGC 60.038 55.000 0.00 0.00 0.00 4.26
3071 17286 0.038251 CGCACTACTCCACTTCTGCA 60.038 55.000 0.00 0.00 0.00 4.41
3072 17287 1.404717 CGCACTACTCCACTTCTGCAT 60.405 52.381 0.00 0.00 0.00 3.96
3073 17288 2.005451 GCACTACTCCACTTCTGCATG 58.995 52.381 0.00 0.00 0.00 4.06
3074 17289 2.005451 CACTACTCCACTTCTGCATGC 58.995 52.381 11.82 11.82 0.00 4.06
3075 17290 1.625315 ACTACTCCACTTCTGCATGCA 59.375 47.619 21.29 21.29 0.00 3.96
3076 17291 2.005451 CTACTCCACTTCTGCATGCAC 58.995 52.381 18.46 0.00 0.00 4.57
3077 17292 0.952497 ACTCCACTTCTGCATGCACG 60.952 55.000 18.46 13.29 0.00 5.34
3078 17293 2.177531 CCACTTCTGCATGCACGC 59.822 61.111 18.46 0.00 0.00 5.34
3079 17294 2.202260 CACTTCTGCATGCACGCG 60.202 61.111 18.46 7.79 33.35 6.01
3080 17295 4.093952 ACTTCTGCATGCACGCGC 62.094 61.111 18.46 0.00 39.24 6.86
3081 17296 4.824166 CTTCTGCATGCACGCGCC 62.824 66.667 18.46 0.00 37.32 6.53
3097 17312 4.263572 CCCACAACGGACCAGCCA 62.264 66.667 0.00 0.00 36.56 4.75
3098 17313 2.978010 CCACAACGGACCAGCCAC 60.978 66.667 0.00 0.00 36.56 5.01
3099 17314 2.203139 CACAACGGACCAGCCACA 60.203 61.111 0.00 0.00 35.94 4.17
3100 17315 2.203153 ACAACGGACCAGCCACAC 60.203 61.111 0.00 0.00 35.94 3.82
3101 17316 2.203139 CAACGGACCAGCCACACA 60.203 61.111 0.00 0.00 35.94 3.72
3102 17317 1.600636 CAACGGACCAGCCACACAT 60.601 57.895 0.00 0.00 35.94 3.21
3103 17318 0.321210 CAACGGACCAGCCACACATA 60.321 55.000 0.00 0.00 35.94 2.29
3104 17319 0.618458 AACGGACCAGCCACACATAT 59.382 50.000 0.00 0.00 35.94 1.78
3105 17320 0.178068 ACGGACCAGCCACACATATC 59.822 55.000 0.00 0.00 35.94 1.63
3106 17321 0.875908 CGGACCAGCCACACATATCG 60.876 60.000 0.00 0.00 35.94 2.92
3123 17338 2.471255 CGGCTTGATCCGCTTCTTT 58.529 52.632 4.39 0.00 43.18 2.52
3124 17339 0.375106 CGGCTTGATCCGCTTCTTTC 59.625 55.000 4.39 0.00 43.18 2.62
3126 17341 1.668237 GGCTTGATCCGCTTCTTTCTC 59.332 52.381 4.39 0.00 0.00 2.87
3129 17344 2.680312 TGATCCGCTTCTTTCTCCAG 57.320 50.000 0.00 0.00 0.00 3.86
3130 17345 1.294857 GATCCGCTTCTTTCTCCAGC 58.705 55.000 0.00 0.00 0.00 4.85
3131 17346 0.615331 ATCCGCTTCTTTCTCCAGCA 59.385 50.000 0.00 0.00 32.71 4.41
3132 17347 0.036952 TCCGCTTCTTTCTCCAGCAG 60.037 55.000 0.00 0.00 32.71 4.24
3133 17348 1.642952 CCGCTTCTTTCTCCAGCAGC 61.643 60.000 0.00 0.00 32.71 5.25
3134 17349 0.673022 CGCTTCTTTCTCCAGCAGCT 60.673 55.000 0.00 0.00 32.71 4.24
3135 17350 1.085893 GCTTCTTTCTCCAGCAGCTC 58.914 55.000 0.00 0.00 33.45 4.09
3136 17351 1.610102 GCTTCTTTCTCCAGCAGCTCA 60.610 52.381 0.00 0.00 33.45 4.26
3137 17352 2.075338 CTTCTTTCTCCAGCAGCTCAC 58.925 52.381 0.00 0.00 0.00 3.51
3138 17353 0.037882 TCTTTCTCCAGCAGCTCACG 60.038 55.000 0.00 0.00 0.00 4.35
3139 17354 1.633852 CTTTCTCCAGCAGCTCACGC 61.634 60.000 0.00 0.00 0.00 5.34
3140 17355 2.381838 TTTCTCCAGCAGCTCACGCA 62.382 55.000 0.00 0.00 39.10 5.24
3141 17356 3.117171 CTCCAGCAGCTCACGCAC 61.117 66.667 0.00 0.00 39.10 5.34
3144 17359 3.771491 CAGCAGCTCACGCACGTC 61.771 66.667 0.00 0.00 39.10 4.34
3148 17363 2.106131 AGCTCACGCACGTCACAA 59.894 55.556 0.00 0.00 39.10 3.33
3159 17374 2.138320 CACGTCACAAGCTTGAGTCAT 58.862 47.619 32.50 8.71 0.00 3.06
3160 17375 2.545526 CACGTCACAAGCTTGAGTCATT 59.454 45.455 32.50 6.30 0.00 2.57
3161 17376 2.802816 ACGTCACAAGCTTGAGTCATTC 59.197 45.455 32.50 13.19 0.00 2.67
3168 17383 3.064900 AGCTTGAGTCATTCCCAAGTC 57.935 47.619 0.00 0.00 39.41 3.01
3170 17385 2.746362 GCTTGAGTCATTCCCAAGTCTG 59.254 50.000 0.00 0.00 39.41 3.51
3171 17386 3.808618 GCTTGAGTCATTCCCAAGTCTGT 60.809 47.826 0.00 0.00 39.41 3.41
3173 17388 4.808414 TGAGTCATTCCCAAGTCTGTAG 57.192 45.455 0.00 0.00 0.00 2.74
3176 17391 3.003480 GTCATTCCCAAGTCTGTAGCAC 58.997 50.000 0.00 0.00 0.00 4.40
3180 17395 2.884320 TCCCAAGTCTGTAGCACACTA 58.116 47.619 0.00 0.00 0.00 2.74
3181 17396 2.826128 TCCCAAGTCTGTAGCACACTAG 59.174 50.000 0.00 0.00 0.00 2.57
3194 17409 1.448540 CACTAGGAGCTTGCCCACG 60.449 63.158 0.00 0.00 0.00 4.94
3195 17410 2.512515 CTAGGAGCTTGCCCACGC 60.513 66.667 0.00 0.00 0.00 5.34
3196 17411 3.315142 CTAGGAGCTTGCCCACGCA 62.315 63.158 0.00 0.00 45.49 5.24
3215 17430 0.738063 AACGACACACTTGACGCACA 60.738 50.000 0.00 0.00 43.52 4.57
3220 17435 0.436150 CACACTTGACGCACATCTCG 59.564 55.000 0.00 0.00 0.00 4.04
3224 17439 1.810755 ACTTGACGCACATCTCGACTA 59.189 47.619 0.00 0.00 0.00 2.59
3226 17441 2.257974 TGACGCACATCTCGACTAAC 57.742 50.000 0.00 0.00 0.00 2.34
3241 17456 1.135460 ACTAACTGCGTCCGCTTCTAC 60.135 52.381 13.31 0.00 42.51 2.59
3248 17463 1.592400 CGTCCGCTTCTACCTCCACA 61.592 60.000 0.00 0.00 0.00 4.17
3251 17466 0.173708 CCGCTTCTACCTCCACACTC 59.826 60.000 0.00 0.00 0.00 3.51
3252 17467 1.178276 CGCTTCTACCTCCACACTCT 58.822 55.000 0.00 0.00 0.00 3.24
3260 17475 1.273267 ACCTCCACACTCTATCTGCCA 60.273 52.381 0.00 0.00 0.00 4.92
3262 17477 1.827344 CTCCACACTCTATCTGCCACA 59.173 52.381 0.00 0.00 0.00 4.17
3263 17478 2.234661 CTCCACACTCTATCTGCCACAA 59.765 50.000 0.00 0.00 0.00 3.33
3276 17502 3.114616 CACAAGACTCGGCCGCTG 61.115 66.667 23.51 18.32 0.00 5.18
3283 17509 4.749310 CTCGGCCGCTGCAACTCT 62.749 66.667 23.51 0.00 40.13 3.24
3284 17510 4.314440 TCGGCCGCTGCAACTCTT 62.314 61.111 23.51 0.00 40.13 2.85
3292 17518 0.952984 GCTGCAACTCTTCGGAGCTT 60.953 55.000 0.00 0.00 45.43 3.74
3294 17520 1.196354 CTGCAACTCTTCGGAGCTTTG 59.804 52.381 0.00 0.83 45.43 2.77
3295 17521 1.230324 GCAACTCTTCGGAGCTTTGT 58.770 50.000 6.13 0.00 45.43 2.83
3298 17524 0.106708 ACTCTTCGGAGCTTTGTGCA 59.893 50.000 0.00 0.00 45.43 4.57
3299 17525 1.271054 ACTCTTCGGAGCTTTGTGCAT 60.271 47.619 0.00 0.00 45.43 3.96
3300 17526 1.129998 CTCTTCGGAGCTTTGTGCATG 59.870 52.381 0.00 0.00 45.94 4.06
3301 17527 0.455633 CTTCGGAGCTTTGTGCATGC 60.456 55.000 11.82 11.82 45.94 4.06
3302 17528 0.890542 TTCGGAGCTTTGTGCATGCT 60.891 50.000 20.33 6.25 45.94 3.79
3303 17529 1.154093 CGGAGCTTTGTGCATGCTG 60.154 57.895 20.33 5.17 45.94 4.41
3304 17530 1.445582 GGAGCTTTGTGCATGCTGC 60.446 57.895 20.33 14.35 45.94 5.25
3305 17531 1.585006 GAGCTTTGTGCATGCTGCT 59.415 52.632 20.33 18.49 45.31 4.24
3306 17532 0.806868 GAGCTTTGTGCATGCTGCTA 59.193 50.000 20.33 6.08 45.31 3.49
3307 17533 1.200716 GAGCTTTGTGCATGCTGCTAA 59.799 47.619 20.33 13.16 45.31 3.09
3308 17534 1.068055 AGCTTTGTGCATGCTGCTAAC 60.068 47.619 20.33 8.76 45.31 2.34
3309 17535 1.068055 GCTTTGTGCATGCTGCTAACT 60.068 47.619 20.33 0.00 45.31 2.24
3310 17536 2.162208 GCTTTGTGCATGCTGCTAACTA 59.838 45.455 20.33 2.03 45.31 2.24
3313 17539 4.424061 TTGTGCATGCTGCTAACTAAAG 57.576 40.909 20.33 0.00 45.31 1.85
3314 17540 3.411446 TGTGCATGCTGCTAACTAAAGT 58.589 40.909 20.33 0.00 45.31 2.66
3315 17541 3.820467 TGTGCATGCTGCTAACTAAAGTT 59.180 39.130 20.33 0.39 45.31 2.66
3317 17543 4.853743 GTGCATGCTGCTAACTAAAGTTTC 59.146 41.667 20.33 0.00 45.31 2.78
3333 17701 8.796475 ACTAAAGTTTCAACTACATGCATGAAT 58.204 29.630 32.75 14.25 38.57 2.57
3363 19340 5.733226 ATGCGACGAAATAAACATGATGA 57.267 34.783 0.00 0.00 0.00 2.92
3382 19359 7.016153 TGATGAATACCTAGACAACAAGGTT 57.984 36.000 0.00 0.00 43.77 3.50
4020 25245 3.199946 TCTGCCATTCTTTCCGGAGTATT 59.800 43.478 3.34 0.00 0.00 1.89
4021 25246 4.407621 TCTGCCATTCTTTCCGGAGTATTA 59.592 41.667 3.34 0.00 0.00 0.98
4022 25247 4.448210 TGCCATTCTTTCCGGAGTATTAC 58.552 43.478 3.34 0.00 0.00 1.89
4023 25248 4.163458 TGCCATTCTTTCCGGAGTATTACT 59.837 41.667 3.34 0.00 0.00 2.24
4165 25390 7.040271 AGCTAATAAAAATTGGTGTAACGTGGT 60.040 33.333 0.00 0.00 38.12 4.16
4190 25415 1.214175 TGTTTTGAGCCTTGACTGGGA 59.786 47.619 0.00 0.00 0.00 4.37
4327 25554 0.589223 TGAACGCCCGAATGACAAAC 59.411 50.000 0.00 0.00 0.00 2.93
4418 25645 3.669557 GCTAAATGATTTGCCGTGTTCGT 60.670 43.478 0.00 0.00 32.12 3.85
4424 25651 2.392933 TTTGCCGTGTTCGTGAAATC 57.607 45.000 0.00 0.00 35.01 2.17
4448 25676 8.093659 TCAAATTATCATTCTCGTGACAACAA 57.906 30.769 0.00 0.00 0.00 2.83
4534 25763 9.807649 TTACCCTTTTTGTACTAGATAATCGAC 57.192 33.333 0.00 0.00 0.00 4.20
4599 26144 1.340991 GCATGTATGGTTGAGGGGTGT 60.341 52.381 0.00 0.00 0.00 4.16
4643 26188 4.607955 TGCATGAGAACGCATAGTACTAC 58.392 43.478 4.31 0.00 31.95 2.73
4688 26233 4.142204 ACATGCATTTGTGTTGTCAACAGA 60.142 37.500 18.70 14.93 43.10 3.41
4852 26417 0.390603 CTTCCCATGGCACGTACGAA 60.391 55.000 24.41 4.69 0.00 3.85
4855 26420 0.390603 CCCATGGCACGTACGAAGAA 60.391 55.000 24.41 5.08 0.00 2.52
4860 26425 1.801771 TGGCACGTACGAAGAAATTGG 59.198 47.619 24.41 0.80 0.00 3.16
4861 26426 1.129811 GGCACGTACGAAGAAATTGGG 59.870 52.381 24.41 0.00 0.00 4.12
4862 26427 1.129811 GCACGTACGAAGAAATTGGGG 59.870 52.381 24.41 0.00 0.00 4.96
4863 26428 2.419667 CACGTACGAAGAAATTGGGGT 58.580 47.619 24.41 0.00 0.00 4.95
4864 26429 3.587923 CACGTACGAAGAAATTGGGGTA 58.412 45.455 24.41 0.00 0.00 3.69
4865 26430 3.615496 CACGTACGAAGAAATTGGGGTAG 59.385 47.826 24.41 0.00 0.00 3.18
4866 26431 3.259123 ACGTACGAAGAAATTGGGGTAGT 59.741 43.478 24.41 0.00 0.00 2.73
4867 26432 4.248058 CGTACGAAGAAATTGGGGTAGTT 58.752 43.478 10.44 0.00 0.00 2.24
4868 26433 4.692155 CGTACGAAGAAATTGGGGTAGTTT 59.308 41.667 10.44 0.00 0.00 2.66
4869 26434 5.390145 CGTACGAAGAAATTGGGGTAGTTTG 60.390 44.000 10.44 0.00 0.00 2.93
4870 26435 3.824443 ACGAAGAAATTGGGGTAGTTTGG 59.176 43.478 0.00 0.00 0.00 3.28
4871 26436 4.076394 CGAAGAAATTGGGGTAGTTTGGA 58.924 43.478 0.00 0.00 0.00 3.53
4872 26437 4.705023 CGAAGAAATTGGGGTAGTTTGGAT 59.295 41.667 0.00 0.00 0.00 3.41
4873 26438 5.163652 CGAAGAAATTGGGGTAGTTTGGATC 60.164 44.000 0.00 0.00 0.00 3.36
4874 26439 4.270008 AGAAATTGGGGTAGTTTGGATCG 58.730 43.478 0.00 0.00 0.00 3.69
4875 26440 3.732048 AATTGGGGTAGTTTGGATCGT 57.268 42.857 0.00 0.00 0.00 3.73
4876 26441 2.483014 TTGGGGTAGTTTGGATCGTG 57.517 50.000 0.00 0.00 0.00 4.35
4877 26442 0.616371 TGGGGTAGTTTGGATCGTGG 59.384 55.000 0.00 0.00 0.00 4.94
4878 26443 0.746923 GGGGTAGTTTGGATCGTGGC 60.747 60.000 0.00 0.00 0.00 5.01
4879 26444 0.746923 GGGTAGTTTGGATCGTGGCC 60.747 60.000 0.00 0.00 0.00 5.36
4880 26445 0.252197 GGTAGTTTGGATCGTGGCCT 59.748 55.000 3.32 0.00 0.00 5.19
4881 26446 1.369625 GTAGTTTGGATCGTGGCCTG 58.630 55.000 3.32 0.00 0.00 4.85
4882 26447 0.251916 TAGTTTGGATCGTGGCCTGG 59.748 55.000 3.32 0.00 0.00 4.45
4883 26448 2.046285 GTTTGGATCGTGGCCTGGG 61.046 63.158 3.32 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.393800 ACAAGATGAAACGTGAGACCAG 58.606 45.455 0.00 0.00 0.00 4.00
1 2 3.469008 ACAAGATGAAACGTGAGACCA 57.531 42.857 0.00 0.00 0.00 4.02
2 3 5.118817 GTCTTACAAGATGAAACGTGAGACC 59.881 44.000 0.00 0.00 37.39 3.85
3 4 5.921408 AGTCTTACAAGATGAAACGTGAGAC 59.079 40.000 0.00 0.00 37.39 3.36
4 5 5.920840 CAGTCTTACAAGATGAAACGTGAGA 59.079 40.000 0.00 0.00 37.39 3.27
19 1270 6.293190 CGTGGCATTTTCTAAACAGTCTTACA 60.293 38.462 0.00 0.00 0.00 2.41
28 1279 5.352643 AGTACACGTGGCATTTTCTAAAC 57.647 39.130 21.57 0.71 0.00 2.01
55 1308 2.996631 AGAAGAGGCGCATCAAGATTT 58.003 42.857 25.38 9.14 0.00 2.17
67 1320 3.020274 GGAGAATTGGGAAAGAAGAGGC 58.980 50.000 0.00 0.00 0.00 4.70
77 1330 1.663911 TTCGGGAAGGAGAATTGGGA 58.336 50.000 0.00 0.00 0.00 4.37
84 1337 2.290071 GGTGTCAATTTCGGGAAGGAGA 60.290 50.000 0.00 0.00 0.00 3.71
93 1346 0.804989 GGCTGGAGGTGTCAATTTCG 59.195 55.000 0.00 0.00 0.00 3.46
97 1350 1.492176 CATAGGGCTGGAGGTGTCAAT 59.508 52.381 0.00 0.00 0.00 2.57
114 1367 7.560991 TGTAGTCTAACCCGTTTAGGATTCATA 59.439 37.037 2.21 0.00 45.00 2.15
150 1403 3.454082 TGGCCCAATTTCAAAAACTCAGT 59.546 39.130 0.00 0.00 0.00 3.41
155 1408 3.188254 CCGATTGGCCCAATTTCAAAAAC 59.812 43.478 10.97 0.00 33.90 2.43
177 1430 4.116961 TGGATCGGACGTTCAATATTGAC 58.883 43.478 17.76 11.71 36.83 3.18
215 1468 1.407575 GCTGGAGGTAGAAGAAAGGCC 60.408 57.143 0.00 0.00 0.00 5.19
229 1482 4.284829 AGAAGAAGGAGAAAAGCTGGAG 57.715 45.455 0.00 0.00 0.00 3.86
280 1534 0.602905 GAAGGTGGTGGTCGAAGGTG 60.603 60.000 0.00 0.00 0.00 4.00
281 1535 1.752833 GAAGGTGGTGGTCGAAGGT 59.247 57.895 0.00 0.00 0.00 3.50
282 1536 1.374252 CGAAGGTGGTGGTCGAAGG 60.374 63.158 0.00 0.00 36.92 3.46
283 1537 0.666577 GTCGAAGGTGGTGGTCGAAG 60.667 60.000 0.00 0.00 44.64 3.79
284 1538 1.364901 GTCGAAGGTGGTGGTCGAA 59.635 57.895 0.00 0.00 44.64 3.71
285 1539 2.567497 GGTCGAAGGTGGTGGTCGA 61.567 63.158 0.00 0.00 41.22 4.20
286 1540 2.048503 GGTCGAAGGTGGTGGTCG 60.049 66.667 0.00 0.00 36.12 4.79
287 1541 0.391263 GATGGTCGAAGGTGGTGGTC 60.391 60.000 0.00 0.00 0.00 4.02
288 1542 1.125093 TGATGGTCGAAGGTGGTGGT 61.125 55.000 0.00 0.00 0.00 4.16
289 1543 0.673644 GTGATGGTCGAAGGTGGTGG 60.674 60.000 0.00 0.00 0.00 4.61
290 1544 0.673644 GGTGATGGTCGAAGGTGGTG 60.674 60.000 0.00 0.00 0.00 4.17
291 1545 1.677552 GGTGATGGTCGAAGGTGGT 59.322 57.895 0.00 0.00 0.00 4.16
292 1546 1.078426 GGGTGATGGTCGAAGGTGG 60.078 63.158 0.00 0.00 0.00 4.61
293 1547 1.447838 CGGGTGATGGTCGAAGGTG 60.448 63.158 0.00 0.00 0.00 4.00
294 1548 2.978824 CGGGTGATGGTCGAAGGT 59.021 61.111 0.00 0.00 0.00 3.50
295 1549 2.511600 GCGGGTGATGGTCGAAGG 60.512 66.667 0.00 0.00 0.00 3.46
296 1550 1.811266 CTGCGGGTGATGGTCGAAG 60.811 63.158 0.00 0.00 0.00 3.79
297 1551 2.264480 CTGCGGGTGATGGTCGAA 59.736 61.111 0.00 0.00 0.00 3.71
298 1552 4.451150 GCTGCGGGTGATGGTCGA 62.451 66.667 0.00 0.00 0.00 4.20
372 1626 0.680280 GAGGGTGGCGACTAGACAGA 60.680 60.000 0.00 0.00 39.56 3.41
386 1640 2.664835 CTAGAGGGATGGCCGAGGGT 62.665 65.000 0.00 0.00 33.83 4.34
390 1644 1.633774 GAATCTAGAGGGATGGCCGA 58.366 55.000 0.00 0.00 33.83 5.54
407 1661 0.662085 AAAAACTAAACGCGGCCGAA 59.338 45.000 33.48 6.88 38.29 4.30
408 1662 2.319219 AAAAACTAAACGCGGCCGA 58.681 47.368 33.48 6.25 38.29 5.54
431 1685 2.434185 GGTGATGCACTTCGCCGA 60.434 61.111 4.21 0.00 41.33 5.54
476 1730 1.743995 CTTAGGGTTTCGGGTGGCG 60.744 63.158 0.00 0.00 0.00 5.69
477 1731 0.255033 ATCTTAGGGTTTCGGGTGGC 59.745 55.000 0.00 0.00 0.00 5.01
484 1738 7.331089 ACCCCATTATCTATCTTAGGGTTTC 57.669 40.000 0.00 0.00 44.14 2.78
485 1739 7.037514 GCTACCCCATTATCTATCTTAGGGTTT 60.038 40.741 2.21 0.00 44.14 3.27
559 1813 1.067846 GTCGATTTTCAAGGGTTGGCC 60.068 52.381 0.00 0.00 0.00 5.36
566 1820 2.084546 GGGACCAGTCGATTTTCAAGG 58.915 52.381 0.00 0.00 0.00 3.61
579 1833 5.334879 CGACTGAATTTAAAACAGGGACCAG 60.335 44.000 21.33 10.51 36.17 4.00
582 1836 5.934935 TCGACTGAATTTAAAACAGGGAC 57.065 39.130 21.33 14.31 36.17 4.46
583 1837 6.488683 ACAATCGACTGAATTTAAAACAGGGA 59.511 34.615 21.33 18.49 36.17 4.20
677 1931 5.278364 GCACTAGATAGCTAGCTTTTCCGTA 60.278 44.000 24.88 2.48 46.55 4.02
679 1933 3.984633 GCACTAGATAGCTAGCTTTTCCG 59.015 47.826 24.88 15.31 46.55 4.30
693 1947 3.077519 GCCCGTCGGTGCACTAGAT 62.078 63.158 17.98 0.00 0.00 1.98
727 1981 6.698766 GGATTTGATGTTTAACTGATGATGCC 59.301 38.462 0.00 0.00 0.00 4.40
728 1982 6.698766 GGGATTTGATGTTTAACTGATGATGC 59.301 38.462 0.00 0.00 0.00 3.91
729 1983 7.774134 TGGGATTTGATGTTTAACTGATGATG 58.226 34.615 0.00 0.00 0.00 3.07
731 1985 7.773489 TTGGGATTTGATGTTTAACTGATGA 57.227 32.000 0.00 0.00 0.00 2.92
732 1986 8.711457 GTTTTGGGATTTGATGTTTAACTGATG 58.289 33.333 0.00 0.00 0.00 3.07
733 1987 8.428063 TGTTTTGGGATTTGATGTTTAACTGAT 58.572 29.630 0.00 0.00 0.00 2.90
734 1988 7.786030 TGTTTTGGGATTTGATGTTTAACTGA 58.214 30.769 0.00 0.00 0.00 3.41
735 1989 7.307337 GCTGTTTTGGGATTTGATGTTTAACTG 60.307 37.037 0.00 0.00 0.00 3.16
736 1990 6.705825 GCTGTTTTGGGATTTGATGTTTAACT 59.294 34.615 0.00 0.00 0.00 2.24
737 1991 6.346518 CGCTGTTTTGGGATTTGATGTTTAAC 60.347 38.462 0.00 0.00 0.00 2.01
782 2036 7.761704 AGTCGAATATCTCCAATGTGTATATGC 59.238 37.037 0.00 0.00 0.00 3.14
795 2049 5.250235 TCACTGTTGAGTCGAATATCTCC 57.750 43.478 0.00 0.00 0.00 3.71
807 2061 1.522668 TTGGCGGAATCACTGTTGAG 58.477 50.000 0.00 0.00 34.35 3.02
840 2094 3.254960 AGATCTATAGGCCTGGTGCAAT 58.745 45.455 17.99 1.30 43.89 3.56
851 2105 7.440198 TCTGTCTCATGCAAAAGATCTATAGG 58.560 38.462 0.00 0.00 0.00 2.57
853 2107 7.876582 CCATCTGTCTCATGCAAAAGATCTATA 59.123 37.037 0.00 0.00 0.00 1.31
870 2124 0.689080 ATCGTCTGGCCCATCTGTCT 60.689 55.000 0.00 0.00 0.00 3.41
871 2125 1.000283 CTATCGTCTGGCCCATCTGTC 60.000 57.143 0.00 0.00 0.00 3.51
872 2126 1.043816 CTATCGTCTGGCCCATCTGT 58.956 55.000 0.00 0.00 0.00 3.41
873 2127 0.320247 GCTATCGTCTGGCCCATCTG 60.320 60.000 0.00 0.00 0.00 2.90
874 2128 0.470833 AGCTATCGTCTGGCCCATCT 60.471 55.000 0.00 0.00 30.08 2.90
875 2129 0.394565 AAGCTATCGTCTGGCCCATC 59.605 55.000 0.00 0.00 30.08 3.51
876 2130 0.107456 CAAGCTATCGTCTGGCCCAT 59.893 55.000 0.00 0.00 30.08 4.00
981 2236 1.838112 TATGTTTTGCTGCTCCCCTG 58.162 50.000 0.00 0.00 0.00 4.45
983 2238 1.410153 CCATATGTTTTGCTGCTCCCC 59.590 52.381 0.00 0.00 0.00 4.81
1081 2336 4.246712 AGGTAAACTCGAGGACCTCATA 57.753 45.455 23.12 7.77 37.83 2.15
1119 2374 4.081185 TCGCCGAGCAGCCATTGA 62.081 61.111 0.00 0.00 0.00 2.57
1194 2449 3.519930 GAGTCCGGGGAGAGCGAC 61.520 72.222 0.00 0.00 0.00 5.19
1287 2542 4.567597 ACGTGACTGGGGGTGGGA 62.568 66.667 0.00 0.00 0.00 4.37
1349 2604 3.119637 CGTGAGAGTCTTCTTCTTCCTCC 60.120 52.174 0.00 0.00 32.53 4.30
1350 2605 3.754323 TCGTGAGAGTCTTCTTCTTCCTC 59.246 47.826 0.00 0.00 32.53 3.71
1353 2608 4.915085 CAGTTCGTGAGAGTCTTCTTCTTC 59.085 45.833 0.00 0.00 43.69 2.87
1363 2618 3.752665 TCTACCTTCAGTTCGTGAGAGT 58.247 45.455 0.00 0.00 43.69 3.24
1364 2619 4.456222 TCTTCTACCTTCAGTTCGTGAGAG 59.544 45.833 0.00 0.00 43.69 3.20
1365 2620 4.395625 TCTTCTACCTTCAGTTCGTGAGA 58.604 43.478 0.00 0.00 36.21 3.27
1442 2700 4.821260 TGTATCTGCATTGTGTTTCAGTGT 59.179 37.500 0.00 0.00 36.38 3.55
1450 2710 2.026641 GCCCATGTATCTGCATTGTGT 58.973 47.619 0.00 0.00 0.00 3.72
1491 2751 4.116585 TGCGTGGGGTGTGTTGGT 62.117 61.111 0.00 0.00 0.00 3.67
1520 2780 1.952367 GCATGCAGCTAGGAAGTTGGT 60.952 52.381 14.21 0.00 41.15 3.67
1571 2834 2.978010 GTGGCTGGTCCGTTGTGG 60.978 66.667 0.00 0.00 37.80 4.17
1578 2841 0.532862 CCGATATGTGTGGCTGGTCC 60.533 60.000 0.00 0.00 0.00 4.46
1610 2873 0.795085 CGTGAGCTGCTTGGAGAAAG 59.205 55.000 2.53 0.00 39.07 2.62
1691 2954 1.502231 GAGATGTGCGTCAAGTGTGT 58.498 50.000 0.00 0.00 0.00 3.72
1775 3038 1.302752 AGCATGCACAAAGCTCCGA 60.303 52.632 21.98 0.00 45.94 4.55
1824 3087 6.889494 TGTTTATTTCGTCGCATTAGTTTCA 58.111 32.000 0.00 0.00 0.00 2.69
1897 3163 6.459161 GGGAGTTCAAATAAACGACAACAAGT 60.459 38.462 0.00 0.00 34.27 3.16
1914 3180 1.855295 TACTACGGCATGGGAGTTCA 58.145 50.000 0.00 0.00 0.00 3.18
2069 3336 2.351276 GCCGGCAAGAAGAAGGGA 59.649 61.111 24.80 0.00 0.00 4.20
2144 8242 0.250727 GCCAGCAACTACAACCAGGA 60.251 55.000 0.00 0.00 0.00 3.86
2170 8268 2.722201 GGACCGGAGCGACTTGGAT 61.722 63.158 9.46 0.00 0.00 3.41
2220 8318 7.174413 TCTTGATCTTAAAACCATGTCCATGA 58.826 34.615 8.82 0.00 41.20 3.07
2248 8346 4.398988 CAGGTAGCTATTGCCATTGAACAA 59.601 41.667 0.00 0.00 40.80 2.83
2524 10232 2.033141 ATGCACTCCACGCTTGCT 59.967 55.556 0.00 0.00 37.16 3.91
2691 15229 2.437359 AGGTCGTCGTCTACCCGG 60.437 66.667 0.00 0.00 36.34 5.73
2865 17035 4.138290 TCAGTTCGTGAGAGTCTTCTTCT 58.862 43.478 0.00 0.00 43.69 2.85
2881 17051 4.926832 GTGCTCTTCTTCTACCTTCAGTTC 59.073 45.833 0.00 0.00 0.00 3.01
2882 17052 4.345257 TGTGCTCTTCTTCTACCTTCAGTT 59.655 41.667 0.00 0.00 0.00 3.16
2885 17055 3.641436 TGTGTGCTCTTCTTCTACCTTCA 59.359 43.478 0.00 0.00 0.00 3.02
2886 17056 3.991121 GTGTGTGCTCTTCTTCTACCTTC 59.009 47.826 0.00 0.00 0.00 3.46
2890 17060 3.984633 GTCTGTGTGTGCTCTTCTTCTAC 59.015 47.826 0.00 0.00 0.00 2.59
2899 17069 0.308993 GCCAAAGTCTGTGTGTGCTC 59.691 55.000 0.00 0.00 0.00 4.26
2905 17115 1.094785 GTGTGTGCCAAAGTCTGTGT 58.905 50.000 0.00 0.00 0.00 3.72
2910 17120 2.923020 CAAAGTTGTGTGTGCCAAAGTC 59.077 45.455 0.00 0.00 0.00 3.01
2934 17145 8.506168 TTCAGTGTGAAGAAATACAGAAAAGT 57.494 30.769 0.00 0.00 31.83 2.66
2942 17153 7.096477 GCATTGTGTTTCAGTGTGAAGAAATAC 60.096 37.037 0.00 0.00 42.51 1.89
2952 17164 4.821260 TGTATCTGCATTGTGTTTCAGTGT 59.179 37.500 0.00 0.00 36.38 3.55
2956 17168 4.158209 CCCATGTATCTGCATTGTGTTTCA 59.842 41.667 0.00 0.00 0.00 2.69
2983 17198 4.746535 TGGTCGAGTGATTTGGCTATTA 57.253 40.909 0.00 0.00 0.00 0.98
2992 17207 1.542547 GGGTGTGTTGGTCGAGTGATT 60.543 52.381 0.00 0.00 0.00 2.57
2994 17209 1.444250 GGGTGTGTTGGTCGAGTGA 59.556 57.895 0.00 0.00 0.00 3.41
2995 17210 1.597027 GGGGTGTGTTGGTCGAGTG 60.597 63.158 0.00 0.00 0.00 3.51
2996 17211 2.067605 TGGGGTGTGTTGGTCGAGT 61.068 57.895 0.00 0.00 0.00 4.18
2997 17212 1.597027 GTGGGGTGTGTTGGTCGAG 60.597 63.158 0.00 0.00 0.00 4.04
2998 17213 2.506962 GTGGGGTGTGTTGGTCGA 59.493 61.111 0.00 0.00 0.00 4.20
2999 17214 2.970324 CGTGGGGTGTGTTGGTCG 60.970 66.667 0.00 0.00 0.00 4.79
3000 17215 3.284449 GCGTGGGGTGTGTTGGTC 61.284 66.667 0.00 0.00 0.00 4.02
3001 17216 4.116585 TGCGTGGGGTGTGTTGGT 62.117 61.111 0.00 0.00 0.00 3.67
3002 17217 2.668185 TAGTGCGTGGGGTGTGTTGG 62.668 60.000 0.00 0.00 0.00 3.77
3003 17218 0.816018 TTAGTGCGTGGGGTGTGTTG 60.816 55.000 0.00 0.00 0.00 3.33
3005 17220 1.227734 GTTAGTGCGTGGGGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
3011 17226 0.322322 TTAGTGGGTTAGTGCGTGGG 59.678 55.000 0.00 0.00 0.00 4.61
3012 17227 1.435577 GTTAGTGGGTTAGTGCGTGG 58.564 55.000 0.00 0.00 0.00 4.94
3016 17231 3.136009 AGTTGGTTAGTGGGTTAGTGC 57.864 47.619 0.00 0.00 0.00 4.40
3020 17235 4.019950 GCTAGGAAGTTGGTTAGTGGGTTA 60.020 45.833 0.00 0.00 0.00 2.85
3021 17236 3.244805 GCTAGGAAGTTGGTTAGTGGGTT 60.245 47.826 0.00 0.00 0.00 4.11
3033 17248 1.457346 GTGCATGCAGCTAGGAAGTT 58.543 50.000 23.41 0.00 45.94 2.66
3037 17252 2.512286 GCGTGCATGCAGCTAGGA 60.512 61.111 25.86 0.00 45.94 2.94
3044 17259 1.741401 GGAGTAGTGCGTGCATGCA 60.741 57.895 29.30 29.30 43.95 3.96
3045 17260 1.741401 TGGAGTAGTGCGTGCATGC 60.741 57.895 24.20 24.20 0.00 4.06
3046 17261 0.390340 AGTGGAGTAGTGCGTGCATG 60.390 55.000 0.09 0.09 0.00 4.06
3047 17262 0.321671 AAGTGGAGTAGTGCGTGCAT 59.678 50.000 0.00 0.00 0.00 3.96
3048 17263 0.319555 GAAGTGGAGTAGTGCGTGCA 60.320 55.000 0.00 0.00 0.00 4.57
3049 17264 0.038159 AGAAGTGGAGTAGTGCGTGC 60.038 55.000 0.00 0.00 0.00 5.34
3050 17265 1.702886 CAGAAGTGGAGTAGTGCGTG 58.297 55.000 0.00 0.00 0.00 5.34
3051 17266 0.038159 GCAGAAGTGGAGTAGTGCGT 60.038 55.000 0.00 0.00 0.00 5.24
3052 17267 0.038251 TGCAGAAGTGGAGTAGTGCG 60.038 55.000 0.00 0.00 33.52 5.34
3053 17268 2.005451 CATGCAGAAGTGGAGTAGTGC 58.995 52.381 0.00 0.00 0.00 4.40
3054 17269 2.005451 GCATGCAGAAGTGGAGTAGTG 58.995 52.381 14.21 0.00 0.00 2.74
3057 17272 1.672737 CGTGCATGCAGAAGTGGAGTA 60.673 52.381 23.41 0.00 0.00 2.59
3058 17273 0.952497 CGTGCATGCAGAAGTGGAGT 60.952 55.000 23.41 0.00 0.00 3.85
3060 17275 2.327343 GCGTGCATGCAGAAGTGGA 61.327 57.895 25.86 0.00 34.15 4.02
3061 17276 2.177531 GCGTGCATGCAGAAGTGG 59.822 61.111 25.86 7.48 34.15 4.00
3062 17277 2.202260 CGCGTGCATGCAGAAGTG 60.202 61.111 29.23 17.72 34.15 3.16
3063 17278 4.093952 GCGCGTGCATGCAGAAGT 62.094 61.111 29.23 0.00 42.15 3.01
3080 17295 4.263572 TGGCTGGTCCGTTGTGGG 62.264 66.667 0.00 0.00 38.76 4.61
3081 17296 2.978010 GTGGCTGGTCCGTTGTGG 60.978 66.667 0.00 0.00 37.80 4.17
3082 17297 2.203139 TGTGGCTGGTCCGTTGTG 60.203 61.111 0.00 0.00 37.80 3.33
3083 17298 2.203153 GTGTGGCTGGTCCGTTGT 60.203 61.111 0.00 0.00 37.80 3.32
3084 17299 0.321210 TATGTGTGGCTGGTCCGTTG 60.321 55.000 0.00 0.00 37.80 4.10
3085 17300 0.618458 ATATGTGTGGCTGGTCCGTT 59.382 50.000 0.00 0.00 37.80 4.44
3086 17301 0.178068 GATATGTGTGGCTGGTCCGT 59.822 55.000 0.00 0.00 37.80 4.69
3087 17302 0.875908 CGATATGTGTGGCTGGTCCG 60.876 60.000 0.00 0.00 37.80 4.79
3088 17303 0.532862 CCGATATGTGTGGCTGGTCC 60.533 60.000 0.00 0.00 0.00 4.46
3089 17304 1.160329 GCCGATATGTGTGGCTGGTC 61.160 60.000 0.00 0.00 45.40 4.02
3090 17305 1.153168 GCCGATATGTGTGGCTGGT 60.153 57.895 0.00 0.00 45.40 4.00
3091 17306 3.736483 GCCGATATGTGTGGCTGG 58.264 61.111 0.00 0.00 45.40 4.85
3095 17310 2.146342 GGATCAAGCCGATATGTGTGG 58.854 52.381 0.00 0.00 33.17 4.17
3106 17321 1.668237 GAGAAAGAAGCGGATCAAGCC 59.332 52.381 8.53 0.00 34.64 4.35
3117 17332 2.075338 GTGAGCTGCTGGAGAAAGAAG 58.925 52.381 7.01 0.00 0.00 2.85
3120 17335 2.453843 CGTGAGCTGCTGGAGAAAG 58.546 57.895 7.01 0.00 0.00 2.62
3133 17348 1.490693 AAGCTTGTGACGTGCGTGAG 61.491 55.000 0.00 0.00 0.00 3.51
3134 17349 1.520564 AAGCTTGTGACGTGCGTGA 60.521 52.632 0.00 0.00 0.00 4.35
3135 17350 1.368019 CAAGCTTGTGACGTGCGTG 60.368 57.895 18.65 0.00 0.00 5.34
3136 17351 1.490693 CTCAAGCTTGTGACGTGCGT 61.491 55.000 25.19 0.00 0.00 5.24
3137 17352 1.202568 CTCAAGCTTGTGACGTGCG 59.797 57.895 25.19 0.00 0.00 5.34
3138 17353 0.233332 GACTCAAGCTTGTGACGTGC 59.767 55.000 29.78 12.64 0.00 5.34
3139 17354 1.570813 TGACTCAAGCTTGTGACGTG 58.429 50.000 29.78 15.02 0.00 4.49
3140 17355 2.533266 ATGACTCAAGCTTGTGACGT 57.467 45.000 29.78 22.80 0.00 4.34
3141 17356 2.158449 GGAATGACTCAAGCTTGTGACG 59.842 50.000 29.78 17.35 0.00 4.35
3142 17357 2.485814 GGGAATGACTCAAGCTTGTGAC 59.514 50.000 29.78 24.39 0.00 3.67
3143 17358 2.106338 TGGGAATGACTCAAGCTTGTGA 59.894 45.455 29.78 11.42 0.00 3.58
3144 17359 2.507484 TGGGAATGACTCAAGCTTGTG 58.493 47.619 25.19 24.22 0.00 3.33
3159 17374 2.047061 AGTGTGCTACAGACTTGGGAA 58.953 47.619 0.00 0.00 34.24 3.97
3160 17375 1.717032 AGTGTGCTACAGACTTGGGA 58.283 50.000 0.00 0.00 34.24 4.37
3161 17376 2.093973 CCTAGTGTGCTACAGACTTGGG 60.094 54.545 14.62 8.91 43.05 4.12
3168 17383 2.886081 CAAGCTCCTAGTGTGCTACAG 58.114 52.381 7.81 0.81 42.76 2.74
3170 17385 1.646189 GCAAGCTCCTAGTGTGCTAC 58.354 55.000 7.81 2.28 42.76 3.58
3171 17386 0.537188 GGCAAGCTCCTAGTGTGCTA 59.463 55.000 4.44 0.00 42.76 3.49
3173 17388 1.746991 GGGCAAGCTCCTAGTGTGC 60.747 63.158 0.00 0.00 34.42 4.57
3176 17391 1.448540 CGTGGGCAAGCTCCTAGTG 60.449 63.158 0.00 0.00 0.00 2.74
3194 17409 1.367665 GCGTCAAGTGTGTCGTTGC 60.368 57.895 0.00 0.00 38.36 4.17
3195 17410 0.315059 GTGCGTCAAGTGTGTCGTTG 60.315 55.000 0.00 0.00 38.36 4.10
3196 17411 0.738063 TGTGCGTCAAGTGTGTCGTT 60.738 50.000 0.00 0.00 38.36 3.85
3197 17412 0.529773 ATGTGCGTCAAGTGTGTCGT 60.530 50.000 0.00 0.00 38.36 4.34
3198 17413 0.161658 GATGTGCGTCAAGTGTGTCG 59.838 55.000 0.00 0.00 38.99 4.35
3199 17414 1.457303 GAGATGTGCGTCAAGTGTGTC 59.543 52.381 0.00 0.00 0.00 3.67
3200 17415 1.502231 GAGATGTGCGTCAAGTGTGT 58.498 50.000 0.00 0.00 0.00 3.72
3226 17441 1.226717 GAGGTAGAAGCGGACGCAG 60.227 63.158 19.48 0.00 44.88 5.18
3241 17456 1.137872 GTGGCAGATAGAGTGTGGAGG 59.862 57.143 0.00 0.00 0.00 4.30
3248 17463 2.425312 CGAGTCTTGTGGCAGATAGAGT 59.575 50.000 0.00 0.00 0.00 3.24
3251 17466 2.215907 CCGAGTCTTGTGGCAGATAG 57.784 55.000 0.00 0.00 0.00 2.08
3262 17477 4.314440 TTGCAGCGGCCGAGTCTT 62.314 61.111 33.48 4.86 40.13 3.01
3276 17502 1.069636 CACAAAGCTCCGAAGAGTTGC 60.070 52.381 0.00 0.00 42.59 4.17
3277 17503 1.069636 GCACAAAGCTCCGAAGAGTTG 60.070 52.381 0.00 0.00 42.59 3.16
3278 17504 1.230324 GCACAAAGCTCCGAAGAGTT 58.770 50.000 0.00 0.00 42.59 3.01
3283 17509 0.890542 AGCATGCACAAAGCTCCGAA 60.891 50.000 21.98 0.00 45.94 4.30
3284 17510 1.302752 AGCATGCACAAAGCTCCGA 60.303 52.632 21.98 0.00 45.94 4.55
3298 17524 6.884280 AGTTGAAACTTTAGTTAGCAGCAT 57.116 33.333 0.00 0.00 37.25 3.79
3299 17525 6.764085 TGTAGTTGAAACTTTAGTTAGCAGCA 59.236 34.615 0.21 0.00 40.37 4.41
3300 17526 7.186021 TGTAGTTGAAACTTTAGTTAGCAGC 57.814 36.000 0.21 0.94 40.37 5.25
3301 17527 7.746475 GCATGTAGTTGAAACTTTAGTTAGCAG 59.254 37.037 0.21 0.00 40.37 4.24
3302 17528 7.227711 TGCATGTAGTTGAAACTTTAGTTAGCA 59.772 33.333 0.21 1.64 40.37 3.49
3303 17529 7.581476 TGCATGTAGTTGAAACTTTAGTTAGC 58.419 34.615 0.21 0.00 40.37 3.09
3304 17530 9.546909 CATGCATGTAGTTGAAACTTTAGTTAG 57.453 33.333 18.91 0.00 40.37 2.34
3305 17531 9.278978 TCATGCATGTAGTTGAAACTTTAGTTA 57.721 29.630 25.43 0.00 40.37 2.24
3306 17532 8.165239 TCATGCATGTAGTTGAAACTTTAGTT 57.835 30.769 25.43 0.00 40.37 2.24
3307 17533 7.744087 TCATGCATGTAGTTGAAACTTTAGT 57.256 32.000 25.43 0.00 40.37 2.24
3308 17534 9.069078 CATTCATGCATGTAGTTGAAACTTTAG 57.931 33.333 25.43 0.00 40.37 1.85
3309 17535 8.791675 TCATTCATGCATGTAGTTGAAACTTTA 58.208 29.630 25.43 0.00 40.37 1.85
3310 17536 7.660112 TCATTCATGCATGTAGTTGAAACTTT 58.340 30.769 25.43 0.00 40.37 2.66
3313 17539 7.596248 AGTTTCATTCATGCATGTAGTTGAAAC 59.404 33.333 34.86 34.86 40.61 2.78
3314 17540 7.660112 AGTTTCATTCATGCATGTAGTTGAAA 58.340 30.769 25.43 25.95 32.35 2.69
3315 17541 7.218228 AGTTTCATTCATGCATGTAGTTGAA 57.782 32.000 25.43 22.77 33.06 2.69
3317 17543 9.016623 CATTAGTTTCATTCATGCATGTAGTTG 57.983 33.333 25.43 17.41 0.00 3.16
3333 17701 6.889494 TGTTTATTTCGTCGCATTAGTTTCA 58.111 32.000 0.00 0.00 0.00 2.69
3363 19340 8.203681 AGAGTTAACCTTGTTGTCTAGGTATT 57.796 34.615 0.88 0.00 45.97 1.89
3382 19359 3.430374 GGCGGTTCAGCTTGATAGAGTTA 60.430 47.826 0.00 0.00 37.29 2.24
4065 25290 4.831155 CCATGGAAAATATCAGGACTGCAT 59.169 41.667 5.56 0.00 0.00 3.96
4165 25390 3.876914 CAGTCAAGGCTCAAAACAGTACA 59.123 43.478 0.00 0.00 0.00 2.90
4201 25427 7.540474 TGTCTTGTAGGAGTACTTCAAATCT 57.460 36.000 3.42 0.00 36.27 2.40
4204 25430 7.120923 ACTTGTCTTGTAGGAGTACTTCAAA 57.879 36.000 3.42 0.00 36.27 2.69
4214 25440 6.525578 ACGATCATAACTTGTCTTGTAGGA 57.474 37.500 0.00 0.00 0.00 2.94
4215 25441 8.697846 TTTACGATCATAACTTGTCTTGTAGG 57.302 34.615 0.00 0.00 0.00 3.18
4217 25443 9.309516 GGATTTACGATCATAACTTGTCTTGTA 57.690 33.333 0.00 0.00 0.00 2.41
4218 25444 8.041323 AGGATTTACGATCATAACTTGTCTTGT 58.959 33.333 0.00 0.00 0.00 3.16
4219 25445 8.425577 AGGATTTACGATCATAACTTGTCTTG 57.574 34.615 0.00 0.00 0.00 3.02
4303 25529 2.070783 GTCATTCGGGCGTTCAGTTTA 58.929 47.619 0.00 0.00 0.00 2.01
4308 25534 0.589223 GTTTGTCATTCGGGCGTTCA 59.411 50.000 0.00 0.00 0.00 3.18
4327 25554 0.523968 CCATTCTCGCGCCAACATTG 60.524 55.000 0.00 0.00 0.00 2.82
4418 25645 8.945057 TGTCACGAGAATGATAATTTGATTTCA 58.055 29.630 0.00 0.00 0.00 2.69
4424 25651 8.726650 TTTGTTGTCACGAGAATGATAATTTG 57.273 30.769 0.00 0.00 33.06 2.32
4489 25718 8.794335 AGGGTAAGCTAAAAATCTGAGTTTAG 57.206 34.615 3.30 10.43 39.36 1.85
4493 25722 8.360390 CAAAAAGGGTAAGCTAAAAATCTGAGT 58.640 33.333 0.00 0.00 0.00 3.41
4494 25723 8.360390 ACAAAAAGGGTAAGCTAAAAATCTGAG 58.640 33.333 0.00 0.00 0.00 3.35
4534 25763 3.493350 CCCTCTCCTGGACAAACGATATG 60.493 52.174 0.00 0.00 0.00 1.78
4543 25772 0.906756 CTTGCTCCCTCTCCTGGACA 60.907 60.000 0.00 0.00 0.00 4.02
4544 25773 0.907230 ACTTGCTCCCTCTCCTGGAC 60.907 60.000 0.00 0.00 0.00 4.02
4545 25774 0.178891 AACTTGCTCCCTCTCCTGGA 60.179 55.000 0.00 0.00 0.00 3.86
4547 25776 0.689623 ACAACTTGCTCCCTCTCCTG 59.310 55.000 0.00 0.00 0.00 3.86
4548 25777 1.439543 AACAACTTGCTCCCTCTCCT 58.560 50.000 0.00 0.00 0.00 3.69
4550 25779 2.351455 GCTAACAACTTGCTCCCTCTC 58.649 52.381 0.00 0.00 0.00 3.20
4599 26144 5.346011 GCATTATATGTTTCGCTCTCGATCA 59.654 40.000 0.00 0.00 45.04 2.92
4643 26188 8.765219 CATGTGGATTAACTAATAGTCCTTTCG 58.235 37.037 0.00 0.00 40.26 3.46
4852 26417 4.263771 ACGATCCAAACTACCCCAATTTCT 60.264 41.667 0.00 0.00 0.00 2.52
4855 26420 3.352648 CACGATCCAAACTACCCCAATT 58.647 45.455 0.00 0.00 0.00 2.32
4860 26425 0.746923 GGCCACGATCCAAACTACCC 60.747 60.000 0.00 0.00 0.00 3.69
4861 26426 0.252197 AGGCCACGATCCAAACTACC 59.748 55.000 5.01 0.00 0.00 3.18
4862 26427 1.369625 CAGGCCACGATCCAAACTAC 58.630 55.000 5.01 0.00 0.00 2.73
4863 26428 0.251916 CCAGGCCACGATCCAAACTA 59.748 55.000 5.01 0.00 0.00 2.24
4864 26429 1.002134 CCAGGCCACGATCCAAACT 60.002 57.895 5.01 0.00 0.00 2.66
4865 26430 2.046285 CCCAGGCCACGATCCAAAC 61.046 63.158 5.01 0.00 0.00 2.93
4866 26431 2.354729 CCCAGGCCACGATCCAAA 59.645 61.111 5.01 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.