Multiple sequence alignment - TraesCS5B01G306100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G306100 chr5B 100.000 2528 0 0 1 2528 489840934 489838407 0.000000e+00 4669.0
1 TraesCS5B01G306100 chr5B 91.333 450 32 7 2081 2528 58207638 58208082 2.150000e-170 608.0
2 TraesCS5B01G306100 chr5B 89.648 454 35 8 2081 2528 18773575 18773128 3.650000e-158 568.0
3 TraesCS5B01G306100 chr5D 88.914 902 50 24 664 1529 408338264 408337377 0.000000e+00 1066.0
4 TraesCS5B01G306100 chr5D 84.177 474 46 14 194 642 408338786 408338317 1.390000e-117 433.0
5 TraesCS5B01G306100 chr5A 88.298 846 51 23 723 1529 514186902 514186066 0.000000e+00 970.0
6 TraesCS5B01G306100 chr5A 85.626 647 54 27 1 628 514187789 514187163 0.000000e+00 643.0
7 TraesCS5B01G306100 chr7B 97.288 553 12 3 1530 2080 403734689 403734138 0.000000e+00 935.0
8 TraesCS5B01G306100 chr7B 96.043 556 19 3 1527 2080 675865669 675866223 0.000000e+00 902.0
9 TraesCS5B01G306100 chr7B 90.399 552 43 8 1529 2074 474432415 474432962 0.000000e+00 717.0
10 TraesCS5B01G306100 chr7B 93.377 453 25 3 2081 2528 107405896 107406348 0.000000e+00 665.0
11 TraesCS5B01G306100 chr7B 90.708 452 30 6 2081 2528 34092559 34093002 2.170000e-165 592.0
12 TraesCS5B01G306100 chr7D 90.744 551 42 8 1530 2074 180849055 180849602 0.000000e+00 726.0
13 TraesCS5B01G306100 chr1D 90.502 558 39 8 1530 2074 457884239 457883683 0.000000e+00 725.0
14 TraesCS5B01G306100 chr1A 89.051 548 52 7 1532 2074 435730170 435730714 0.000000e+00 673.0
15 TraesCS5B01G306100 chr3D 88.151 557 45 12 1532 2079 549633460 549632916 0.000000e+00 643.0
16 TraesCS5B01G306100 chr4A 87.500 552 62 6 1528 2073 645594008 645594558 4.590000e-177 630.0
17 TraesCS5B01G306100 chr4A 94.595 37 2 0 1993 2029 733039195 733039159 9.770000e-05 58.4
18 TraesCS5B01G306100 chr1B 91.574 451 34 4 2081 2528 615541423 615540974 9.930000e-174 619.0
19 TraesCS5B01G306100 chr1B 89.381 452 42 5 2081 2528 175981104 175980655 4.720000e-157 564.0
20 TraesCS5B01G306100 chr3A 91.285 459 28 9 2081 2528 317844082 317844539 1.290000e-172 616.0
21 TraesCS5B01G306100 chr6A 89.934 457 38 6 2080 2528 427701587 427701131 1.300000e-162 582.0
22 TraesCS5B01G306100 chr6A 89.760 459 36 8 2081 2528 592137614 592137156 6.060000e-161 577.0
23 TraesCS5B01G306100 chr6A 86.888 511 51 13 1530 2032 21584090 21583588 2.200000e-155 558.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G306100 chr5B 489838407 489840934 2527 True 4669.0 4669 100.0000 1 2528 1 chr5B.!!$R2 2527
1 TraesCS5B01G306100 chr5D 408337377 408338786 1409 True 749.5 1066 86.5455 194 1529 2 chr5D.!!$R1 1335
2 TraesCS5B01G306100 chr5A 514186066 514187789 1723 True 806.5 970 86.9620 1 1529 2 chr5A.!!$R1 1528
3 TraesCS5B01G306100 chr7B 403734138 403734689 551 True 935.0 935 97.2880 1530 2080 1 chr7B.!!$R1 550
4 TraesCS5B01G306100 chr7B 675865669 675866223 554 False 902.0 902 96.0430 1527 2080 1 chr7B.!!$F4 553
5 TraesCS5B01G306100 chr7B 474432415 474432962 547 False 717.0 717 90.3990 1529 2074 1 chr7B.!!$F3 545
6 TraesCS5B01G306100 chr7D 180849055 180849602 547 False 726.0 726 90.7440 1530 2074 1 chr7D.!!$F1 544
7 TraesCS5B01G306100 chr1D 457883683 457884239 556 True 725.0 725 90.5020 1530 2074 1 chr1D.!!$R1 544
8 TraesCS5B01G306100 chr1A 435730170 435730714 544 False 673.0 673 89.0510 1532 2074 1 chr1A.!!$F1 542
9 TraesCS5B01G306100 chr3D 549632916 549633460 544 True 643.0 643 88.1510 1532 2079 1 chr3D.!!$R1 547
10 TraesCS5B01G306100 chr4A 645594008 645594558 550 False 630.0 630 87.5000 1528 2073 1 chr4A.!!$F1 545
11 TraesCS5B01G306100 chr6A 21583588 21584090 502 True 558.0 558 86.8880 1530 2032 1 chr6A.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 393 0.111446 CTCCCCTCCGAGATAGCTCA 59.889 60.0 8.99 0.0 41.36 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2654 0.036164 TGACAAGGTGCGCCATTAGT 59.964 50.0 20.59 10.79 37.19 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.668550 GGTGGTGACAACGGAGCC 60.669 66.667 0.00 0.00 46.06 4.70
54 55 1.595929 GACAACGGAGCCGAACCAA 60.596 57.895 16.83 0.00 42.83 3.67
55 56 0.953960 GACAACGGAGCCGAACCAAT 60.954 55.000 16.83 0.00 42.83 3.16
56 57 0.953960 ACAACGGAGCCGAACCAATC 60.954 55.000 16.83 0.00 42.83 2.67
92 93 6.347696 AGCAAACAAAAGGTTGAATTCATGA 58.652 32.000 9.40 0.00 40.35 3.07
95 96 7.632721 CAAACAAAAGGTTGAATTCATGAAGG 58.367 34.615 14.54 0.00 40.35 3.46
100 101 2.428530 GGTTGAATTCATGAAGGAGGCC 59.571 50.000 14.54 9.39 0.00 5.19
116 117 3.444034 GGAGGCCTTCAAGTGGTTAAATC 59.556 47.826 6.77 0.00 0.00 2.17
120 121 5.946377 AGGCCTTCAAGTGGTTAAATCTTAG 59.054 40.000 0.00 0.00 0.00 2.18
121 122 5.710567 GGCCTTCAAGTGGTTAAATCTTAGT 59.289 40.000 0.00 0.00 0.00 2.24
122 123 6.882678 GGCCTTCAAGTGGTTAAATCTTAGTA 59.117 38.462 0.00 0.00 0.00 1.82
123 124 7.148289 GGCCTTCAAGTGGTTAAATCTTAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
292 297 2.126580 GCGCGGAAGTCAGTACGT 60.127 61.111 8.83 0.00 0.00 3.57
370 378 2.846754 CCCAGAGCTAGCCCTCCC 60.847 72.222 12.13 0.00 32.17 4.30
380 388 0.774888 TAGCCCTCCCCTCCGAGATA 60.775 60.000 0.00 0.00 30.97 1.98
385 393 0.111446 CTCCCCTCCGAGATAGCTCA 59.889 60.000 8.99 0.00 41.36 4.26
471 479 4.856607 CGGCCGGCGTTCTCTCTC 62.857 72.222 22.54 1.28 0.00 3.20
472 480 3.453679 GGCCGGCGTTCTCTCTCT 61.454 66.667 22.54 0.00 0.00 3.10
473 481 2.103340 GCCGGCGTTCTCTCTCTC 59.897 66.667 12.58 0.00 0.00 3.20
474 482 2.411504 GCCGGCGTTCTCTCTCTCT 61.412 63.158 12.58 0.00 0.00 3.10
475 483 1.725066 CCGGCGTTCTCTCTCTCTC 59.275 63.158 6.01 0.00 0.00 3.20
476 484 0.746563 CCGGCGTTCTCTCTCTCTCT 60.747 60.000 6.01 0.00 0.00 3.10
477 485 0.655733 CGGCGTTCTCTCTCTCTCTC 59.344 60.000 0.00 0.00 0.00 3.20
479 487 1.940613 GGCGTTCTCTCTCTCTCTCTC 59.059 57.143 0.00 0.00 0.00 3.20
480 488 2.420129 GGCGTTCTCTCTCTCTCTCTCT 60.420 54.545 0.00 0.00 0.00 3.10
481 489 2.866762 GCGTTCTCTCTCTCTCTCTCTC 59.133 54.545 0.00 0.00 0.00 3.20
483 491 4.363999 CGTTCTCTCTCTCTCTCTCTCTC 58.636 52.174 0.00 0.00 0.00 3.20
485 493 5.596845 GTTCTCTCTCTCTCTCTCTCTCTC 58.403 50.000 0.00 0.00 0.00 3.20
487 495 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
489 497 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
491 499 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
493 501 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
495 503 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
508 522 2.763448 CTCTCTCTCTCCGGTGGATTTT 59.237 50.000 0.00 0.00 0.00 1.82
513 528 0.774908 TCTCCGGTGGATTTTTGGGT 59.225 50.000 0.00 0.00 0.00 4.51
537 553 3.083997 ATCCACGGGAGGAGGTGC 61.084 66.667 0.00 0.00 41.90 5.01
620 649 0.745845 CAACGGGCCTCCATCTCAAG 60.746 60.000 0.84 0.00 0.00 3.02
631 660 4.216472 CCTCCATCTCAAGCATCATTCATG 59.784 45.833 0.00 0.00 35.29 3.07
683 774 3.424962 CCGGAAGAGAAGAATTTTCGCAC 60.425 47.826 0.00 0.00 0.00 5.34
701 937 3.479269 GCAGTGACGTAGGTGCGC 61.479 66.667 0.00 0.00 34.88 6.09
716 952 3.406361 CGCACGTGCAGGAGTCAC 61.406 66.667 37.03 7.62 42.21 3.67
717 953 3.044305 GCACGTGCAGGAGTCACC 61.044 66.667 34.52 0.76 41.59 4.02
809 1045 2.733671 CGATCGTGCTGTGCCACTG 61.734 63.158 7.03 0.00 33.60 3.66
835 1080 3.659786 CGTCCATGTGAAACTCCTGTTA 58.340 45.455 0.00 0.00 38.04 2.41
849 1094 0.594602 CTGTTACCGTCTCGTGGTCA 59.405 55.000 0.00 0.00 40.96 4.02
850 1095 0.311790 TGTTACCGTCTCGTGGTCAC 59.688 55.000 0.00 0.00 40.96 3.67
851 1096 0.311790 GTTACCGTCTCGTGGTCACA 59.688 55.000 1.90 0.00 40.96 3.58
852 1097 1.068055 GTTACCGTCTCGTGGTCACAT 60.068 52.381 1.90 0.00 40.96 3.21
853 1098 0.524414 TACCGTCTCGTGGTCACATG 59.476 55.000 1.90 0.00 40.96 3.21
856 1106 0.737367 CGTCTCGTGGTCACATGCAT 60.737 55.000 0.00 0.00 33.54 3.96
948 1201 2.676076 ACAAATGCGCAAGTCAAATCC 58.324 42.857 17.11 0.00 41.68 3.01
950 1203 1.549203 AATGCGCAAGTCAAATCCCT 58.451 45.000 17.11 0.00 41.68 4.20
955 1208 1.398390 CGCAAGTCAAATCCCTACTGC 59.602 52.381 0.00 0.00 0.00 4.40
963 1216 2.507471 CAAATCCCTACTGCCCTCTTCT 59.493 50.000 0.00 0.00 0.00 2.85
1063 1345 4.022935 CAGTCAAGCACCTCTGCAAATTAA 60.023 41.667 0.00 0.00 46.97 1.40
1070 1352 5.068987 AGCACCTCTGCAAATTAACAAGAAA 59.931 36.000 0.00 0.00 46.97 2.52
1073 1355 6.980397 CACCTCTGCAAATTAACAAGAAACTT 59.020 34.615 0.00 0.00 0.00 2.66
1077 1359 4.742659 TGCAAATTAACAAGAAACTTCGCC 59.257 37.500 0.00 0.00 0.00 5.54
1083 1365 1.000506 ACAAGAAACTTCGCCGCTCTA 59.999 47.619 0.00 0.00 0.00 2.43
1099 1381 2.166664 GCTCTACTCGGTGGATCTGTTT 59.833 50.000 0.00 0.00 0.00 2.83
1296 1588 3.994853 GGTTCCCCGTCCGACGTT 61.995 66.667 19.13 0.00 40.58 3.99
1445 1743 3.375239 AGCATGCGCATGTTGGCA 61.375 55.556 41.40 7.29 44.29 4.92
1448 1746 1.435925 CATGCGCATGTTGGCATCT 59.564 52.632 36.45 4.44 46.31 2.90
1472 1770 4.899239 GGCGGCCCGTGAGATCAG 62.899 72.222 8.12 0.00 0.00 2.90
1492 1790 1.448540 GCACCGCTGCTGTCTGTAT 60.449 57.895 0.00 0.00 40.63 2.29
1496 1804 1.284657 CCGCTGCTGTCTGTATTCTG 58.715 55.000 0.00 0.00 0.00 3.02
1497 1805 1.404717 CCGCTGCTGTCTGTATTCTGT 60.405 52.381 0.00 0.00 0.00 3.41
1498 1806 1.657594 CGCTGCTGTCTGTATTCTGTG 59.342 52.381 0.00 0.00 0.00 3.66
1504 1812 4.082190 TGCTGTCTGTATTCTGTGTAGTCC 60.082 45.833 0.00 0.00 0.00 3.85
1553 1862 0.475044 ACCTCTTTTTACCGGTGCCA 59.525 50.000 19.93 0.00 0.00 4.92
1705 2016 4.637534 GTCAGATAAAGGACACATGCATGT 59.362 41.667 26.61 26.61 42.84 3.21
1943 2269 4.884744 TCAATGTATTAATTCGGTGTGGGG 59.115 41.667 0.00 0.00 0.00 4.96
2089 2417 9.988815 ATAGTATTTCAATAGAGCACTAACAGG 57.011 33.333 0.00 0.00 32.04 4.00
2090 2418 8.079211 AGTATTTCAATAGAGCACTAACAGGA 57.921 34.615 0.00 0.00 32.04 3.86
2091 2419 8.540388 AGTATTTCAATAGAGCACTAACAGGAA 58.460 33.333 0.00 0.00 32.04 3.36
2092 2420 9.162764 GTATTTCAATAGAGCACTAACAGGAAA 57.837 33.333 0.00 4.21 32.04 3.13
2093 2421 8.635765 ATTTCAATAGAGCACTAACAGGAAAA 57.364 30.769 0.00 0.00 32.04 2.29
2094 2422 7.672983 TTCAATAGAGCACTAACAGGAAAAG 57.327 36.000 0.00 0.00 32.04 2.27
2095 2423 6.173339 TCAATAGAGCACTAACAGGAAAAGG 58.827 40.000 0.00 0.00 32.04 3.11
2096 2424 3.425162 AGAGCACTAACAGGAAAAGGG 57.575 47.619 0.00 0.00 0.00 3.95
2097 2425 1.813178 GAGCACTAACAGGAAAAGGGC 59.187 52.381 0.00 0.00 40.04 5.19
2098 2426 1.425448 AGCACTAACAGGAAAAGGGCT 59.575 47.619 0.00 0.00 45.04 5.19
2099 2427 3.067684 GCACTAACAGGAAAAGGGCTA 57.932 47.619 0.00 0.00 36.70 3.93
2100 2428 3.621558 GCACTAACAGGAAAAGGGCTAT 58.378 45.455 0.00 0.00 36.70 2.97
2101 2429 4.777463 GCACTAACAGGAAAAGGGCTATA 58.223 43.478 0.00 0.00 36.70 1.31
2102 2430 4.816925 GCACTAACAGGAAAAGGGCTATAG 59.183 45.833 0.00 0.00 36.70 1.31
2103 2431 5.396436 GCACTAACAGGAAAAGGGCTATAGA 60.396 44.000 3.21 0.00 36.70 1.98
2104 2432 6.689177 GCACTAACAGGAAAAGGGCTATAGAT 60.689 42.308 3.21 0.00 36.70 1.98
2105 2433 7.472945 GCACTAACAGGAAAAGGGCTATAGATA 60.473 40.741 3.21 0.00 36.70 1.98
2106 2434 8.091449 CACTAACAGGAAAAGGGCTATAGATAG 58.909 40.741 3.21 0.00 0.00 2.08
2107 2435 6.441088 AACAGGAAAAGGGCTATAGATAGG 57.559 41.667 3.21 0.00 0.00 2.57
2108 2436 5.727630 ACAGGAAAAGGGCTATAGATAGGA 58.272 41.667 3.21 0.00 0.00 2.94
2109 2437 6.335115 ACAGGAAAAGGGCTATAGATAGGAT 58.665 40.000 3.21 0.00 0.00 3.24
2110 2438 6.795000 ACAGGAAAAGGGCTATAGATAGGATT 59.205 38.462 3.21 0.00 0.00 3.01
2111 2439 7.108847 CAGGAAAAGGGCTATAGATAGGATTG 58.891 42.308 3.21 0.00 0.00 2.67
2112 2440 7.025620 AGGAAAAGGGCTATAGATAGGATTGA 58.974 38.462 3.21 0.00 0.00 2.57
2113 2441 7.686355 AGGAAAAGGGCTATAGATAGGATTGAT 59.314 37.037 3.21 0.00 0.00 2.57
2114 2442 8.993424 GGAAAAGGGCTATAGATAGGATTGATA 58.007 37.037 3.21 0.00 0.00 2.15
2115 2443 9.825109 GAAAAGGGCTATAGATAGGATTGATAC 57.175 37.037 3.21 0.00 0.00 2.24
2116 2444 9.567702 AAAAGGGCTATAGATAGGATTGATACT 57.432 33.333 3.21 0.00 0.00 2.12
2122 2450 9.921637 GCTATAGATAGGATTGATACTAATGGC 57.078 37.037 3.21 0.00 0.00 4.40
2124 2452 5.665459 AGATAGGATTGATACTAATGGCGC 58.335 41.667 0.00 0.00 0.00 6.53
2125 2453 3.769739 AGGATTGATACTAATGGCGCA 57.230 42.857 10.83 0.00 0.00 6.09
2126 2454 3.403038 AGGATTGATACTAATGGCGCAC 58.597 45.455 10.83 0.00 0.00 5.34
2127 2455 2.484264 GGATTGATACTAATGGCGCACC 59.516 50.000 10.83 0.00 0.00 5.01
2136 2464 3.794481 TGGCGCACCAGGTAAGTA 58.206 55.556 10.83 0.00 42.67 2.24
2137 2465 1.594833 TGGCGCACCAGGTAAGTAG 59.405 57.895 10.83 0.00 42.67 2.57
2138 2466 1.189524 TGGCGCACCAGGTAAGTAGT 61.190 55.000 10.83 0.00 42.67 2.73
2139 2467 0.739813 GGCGCACCAGGTAAGTAGTG 60.740 60.000 10.83 0.00 35.26 2.74
2141 2469 2.750815 GCACCAGGTAAGTAGTGCG 58.249 57.895 0.00 0.00 45.28 5.34
2142 2470 1.359459 GCACCAGGTAAGTAGTGCGC 61.359 60.000 0.00 0.00 45.28 6.09
2143 2471 0.739813 CACCAGGTAAGTAGTGCGCC 60.740 60.000 4.18 0.00 0.00 6.53
2144 2472 1.189524 ACCAGGTAAGTAGTGCGCCA 61.190 55.000 4.18 0.00 0.00 5.69
2145 2473 0.739813 CCAGGTAAGTAGTGCGCCAC 60.740 60.000 4.18 3.02 34.10 5.01
2147 2475 1.475280 CAGGTAAGTAGTGCGCCACTA 59.525 52.381 4.18 10.26 43.46 2.74
2160 2488 6.853720 AGTGCGCCACTACTATATACTAATG 58.146 40.000 4.18 0.00 43.46 1.90
2161 2489 6.034591 GTGCGCCACTACTATATACTAATGG 58.965 44.000 4.18 0.00 0.00 3.16
2162 2490 5.041940 GCGCCACTACTATATACTAATGGC 58.958 45.833 10.25 10.25 46.34 4.40
2164 2492 5.041940 GCCACTACTATATACTAATGGCGC 58.958 45.833 0.00 0.00 41.74 6.53
2165 2493 5.393787 GCCACTACTATATACTAATGGCGCA 60.394 44.000 10.83 0.00 41.74 6.09
2166 2494 6.034591 CCACTACTATATACTAATGGCGCAC 58.965 44.000 10.83 0.00 0.00 5.34
2167 2495 6.034591 CACTACTATATACTAATGGCGCACC 58.965 44.000 10.83 0.00 0.00 5.01
2181 2509 3.337889 CACCAGACACACGGTGCG 61.338 66.667 8.30 0.41 45.77 5.34
2187 2515 3.851845 GACACACGGTGCGCCACTA 62.852 63.158 18.18 0.00 36.98 2.74
2188 2516 3.112075 CACACGGTGCGCCACTAG 61.112 66.667 18.18 1.79 34.40 2.57
2189 2517 3.612681 ACACGGTGCGCCACTAGT 61.613 61.111 18.18 2.53 34.40 2.57
2190 2518 2.270257 ACACGGTGCGCCACTAGTA 61.270 57.895 18.18 0.00 34.40 1.82
2191 2519 1.141019 CACGGTGCGCCACTAGTAT 59.859 57.895 18.18 0.00 34.40 2.12
2192 2520 0.459585 CACGGTGCGCCACTAGTATT 60.460 55.000 18.18 0.00 34.40 1.89
2193 2521 1.105457 ACGGTGCGCCACTAGTATTA 58.895 50.000 18.18 0.00 34.40 0.98
2194 2522 1.477700 ACGGTGCGCCACTAGTATTAA 59.522 47.619 18.18 0.00 34.40 1.40
2195 2523 2.101917 ACGGTGCGCCACTAGTATTAAT 59.898 45.455 18.18 0.00 34.40 1.40
2196 2524 3.128349 CGGTGCGCCACTAGTATTAATT 58.872 45.455 18.18 0.00 34.40 1.40
2197 2525 3.558418 CGGTGCGCCACTAGTATTAATTT 59.442 43.478 18.18 0.00 34.40 1.82
2198 2526 4.034742 CGGTGCGCCACTAGTATTAATTTT 59.965 41.667 18.18 0.00 34.40 1.82
2199 2527 5.448089 CGGTGCGCCACTAGTATTAATTTTT 60.448 40.000 18.18 0.00 34.40 1.94
2227 2555 7.870826 TCATTTTTCCATACATACTAATGGCG 58.129 34.615 0.00 0.00 42.08 5.69
2228 2556 5.682943 TTTTCCATACATACTAATGGCGC 57.317 39.130 0.00 0.00 42.08 6.53
2229 2557 4.344359 TTCCATACATACTAATGGCGCA 57.656 40.909 10.83 0.00 42.08 6.09
2230 2558 4.551702 TCCATACATACTAATGGCGCAT 57.448 40.909 10.83 0.00 42.08 4.73
2231 2559 4.252878 TCCATACATACTAATGGCGCATG 58.747 43.478 10.83 4.74 42.08 4.06
2232 2560 4.020662 TCCATACATACTAATGGCGCATGA 60.021 41.667 10.83 0.00 42.08 3.07
2233 2561 4.330894 CCATACATACTAATGGCGCATGAG 59.669 45.833 10.83 6.19 36.50 2.90
2234 2562 2.771089 ACATACTAATGGCGCATGAGG 58.229 47.619 10.83 0.00 37.43 3.86
2235 2563 2.104792 ACATACTAATGGCGCATGAGGT 59.895 45.455 10.83 4.70 37.43 3.85
2236 2564 2.526304 TACTAATGGCGCATGAGGTC 57.474 50.000 10.83 0.00 0.00 3.85
2237 2565 0.530650 ACTAATGGCGCATGAGGTCG 60.531 55.000 10.83 0.00 0.00 4.79
2238 2566 0.249447 CTAATGGCGCATGAGGTCGA 60.249 55.000 10.83 0.00 0.00 4.20
2239 2567 0.176910 TAATGGCGCATGAGGTCGAA 59.823 50.000 10.83 0.00 0.00 3.71
2240 2568 1.091771 AATGGCGCATGAGGTCGAAG 61.092 55.000 10.83 0.00 0.00 3.79
2241 2569 2.125512 GGCGCATGAGGTCGAAGT 60.126 61.111 10.83 0.00 0.00 3.01
2242 2570 2.456119 GGCGCATGAGGTCGAAGTG 61.456 63.158 10.83 0.00 0.00 3.16
2243 2571 3.084579 CGCATGAGGTCGAAGTGC 58.915 61.111 0.00 0.00 0.00 4.40
2244 2572 3.084579 GCATGAGGTCGAAGTGCG 58.915 61.111 0.00 0.00 42.69 5.34
2245 2573 3.084579 CATGAGGTCGAAGTGCGC 58.915 61.111 0.00 0.00 40.61 6.09
2246 2574 2.125512 ATGAGGTCGAAGTGCGCC 60.126 61.111 4.18 0.00 40.61 6.53
2247 2575 2.942796 ATGAGGTCGAAGTGCGCCA 61.943 57.895 4.18 0.00 40.61 5.69
2248 2576 2.125512 GAGGTCGAAGTGCGCCAT 60.126 61.111 4.18 0.00 40.61 4.40
2249 2577 1.741770 GAGGTCGAAGTGCGCCATT 60.742 57.895 4.18 0.00 40.61 3.16
2250 2578 0.459585 GAGGTCGAAGTGCGCCATTA 60.460 55.000 4.18 0.00 40.61 1.90
2251 2579 0.739813 AGGTCGAAGTGCGCCATTAC 60.740 55.000 4.18 0.00 40.61 1.89
2252 2580 0.739813 GGTCGAAGTGCGCCATTACT 60.740 55.000 4.18 0.00 40.61 2.24
2253 2581 1.470285 GGTCGAAGTGCGCCATTACTA 60.470 52.381 4.18 0.00 40.61 1.82
2254 2582 1.852895 GTCGAAGTGCGCCATTACTAG 59.147 52.381 4.18 0.00 40.61 2.57
2255 2583 1.475280 TCGAAGTGCGCCATTACTAGT 59.525 47.619 4.18 0.00 40.61 2.57
2256 2584 2.094390 TCGAAGTGCGCCATTACTAGTT 60.094 45.455 4.18 0.00 40.61 2.24
2257 2585 2.281762 CGAAGTGCGCCATTACTAGTTC 59.718 50.000 4.18 1.80 0.00 3.01
2258 2586 3.522553 GAAGTGCGCCATTACTAGTTCT 58.477 45.455 4.18 0.00 0.00 3.01
2259 2587 4.679662 GAAGTGCGCCATTACTAGTTCTA 58.320 43.478 4.18 0.00 0.00 2.10
2260 2588 4.730949 AGTGCGCCATTACTAGTTCTAA 57.269 40.909 4.18 0.00 0.00 2.10
2261 2589 4.430908 AGTGCGCCATTACTAGTTCTAAC 58.569 43.478 4.18 0.00 0.00 2.34
2262 2590 4.159879 AGTGCGCCATTACTAGTTCTAACT 59.840 41.667 4.18 0.39 42.91 2.24
2263 2591 5.359009 AGTGCGCCATTACTAGTTCTAACTA 59.641 40.000 4.18 2.76 40.37 2.24
2274 2602 4.730949 AGTTCTAACTAGTAATGGCGCA 57.269 40.909 10.83 0.00 37.52 6.09
2275 2603 4.430908 AGTTCTAACTAGTAATGGCGCAC 58.569 43.478 10.83 0.00 37.52 5.34
2276 2604 3.447918 TCTAACTAGTAATGGCGCACC 57.552 47.619 10.83 0.00 0.00 5.01
2277 2605 2.124903 CTAACTAGTAATGGCGCACCG 58.875 52.381 10.83 0.00 39.70 4.94
2278 2606 0.248289 AACTAGTAATGGCGCACCGT 59.752 50.000 10.83 0.00 39.70 4.83
2279 2607 0.459585 ACTAGTAATGGCGCACCGTG 60.460 55.000 10.83 0.00 39.70 4.94
2280 2608 1.762222 CTAGTAATGGCGCACCGTGC 61.762 60.000 13.81 13.81 39.70 5.34
2281 2609 2.508586 TAGTAATGGCGCACCGTGCA 62.509 55.000 22.89 4.37 45.36 4.57
2282 2610 3.124270 TAATGGCGCACCGTGCAG 61.124 61.111 22.89 15.82 45.36 4.41
2283 2611 3.597675 TAATGGCGCACCGTGCAGA 62.598 57.895 22.89 6.45 45.36 4.26
2288 2616 3.705638 CGCACCGTGCAGACAGTG 61.706 66.667 22.89 1.23 45.36 3.66
2296 2624 3.889227 GCAGACAGTGCGCCATTA 58.111 55.556 4.18 0.00 43.99 1.90
2297 2625 1.717937 GCAGACAGTGCGCCATTAG 59.282 57.895 4.18 0.00 43.99 1.73
2298 2626 1.021390 GCAGACAGTGCGCCATTAGT 61.021 55.000 4.18 0.00 43.99 2.24
2299 2627 1.739035 GCAGACAGTGCGCCATTAGTA 60.739 52.381 4.18 0.00 43.99 1.82
2300 2628 2.826428 CAGACAGTGCGCCATTAGTAT 58.174 47.619 4.18 0.00 0.00 2.12
2301 2629 3.198068 CAGACAGTGCGCCATTAGTATT 58.802 45.455 4.18 0.00 0.00 1.89
2302 2630 3.623060 CAGACAGTGCGCCATTAGTATTT 59.377 43.478 4.18 0.00 0.00 1.40
2303 2631 4.094887 CAGACAGTGCGCCATTAGTATTTT 59.905 41.667 4.18 0.00 0.00 1.82
2304 2632 4.700213 AGACAGTGCGCCATTAGTATTTTT 59.300 37.500 4.18 0.00 0.00 1.94
2336 2664 2.911819 TGCAAAACTACTAATGGCGC 57.088 45.000 0.00 0.00 0.00 6.53
2337 2665 2.155279 TGCAAAACTACTAATGGCGCA 58.845 42.857 10.83 0.00 0.00 6.09
2338 2666 2.095466 TGCAAAACTACTAATGGCGCAC 60.095 45.455 10.83 0.00 0.00 5.34
2339 2667 2.731027 GCAAAACTACTAATGGCGCACC 60.731 50.000 10.83 0.00 0.00 5.01
2340 2668 2.747446 CAAAACTACTAATGGCGCACCT 59.253 45.455 10.83 0.00 36.63 4.00
2341 2669 2.781681 AACTACTAATGGCGCACCTT 57.218 45.000 10.83 1.13 36.63 3.50
2342 2670 2.024176 ACTACTAATGGCGCACCTTG 57.976 50.000 10.83 0.00 36.63 3.61
2343 2671 1.278127 ACTACTAATGGCGCACCTTGT 59.722 47.619 10.83 4.70 36.63 3.16
2344 2672 1.933853 CTACTAATGGCGCACCTTGTC 59.066 52.381 10.83 0.00 36.63 3.18
2345 2673 0.036164 ACTAATGGCGCACCTTGTCA 59.964 50.000 10.83 0.00 36.63 3.58
2346 2674 0.447801 CTAATGGCGCACCTTGTCAC 59.552 55.000 10.83 0.00 36.63 3.67
2347 2675 0.250510 TAATGGCGCACCTTGTCACA 60.251 50.000 10.83 0.00 36.63 3.58
2348 2676 1.518056 AATGGCGCACCTTGTCACAG 61.518 55.000 10.83 0.00 36.63 3.66
2349 2677 2.591715 GGCGCACCTTGTCACAGT 60.592 61.111 10.83 0.00 0.00 3.55
2350 2678 1.301401 GGCGCACCTTGTCACAGTA 60.301 57.895 10.83 0.00 0.00 2.74
2351 2679 1.566018 GGCGCACCTTGTCACAGTAC 61.566 60.000 10.83 0.00 0.00 2.73
2352 2680 1.886861 GCGCACCTTGTCACAGTACG 61.887 60.000 0.30 0.00 0.00 3.67
2353 2681 1.860078 GCACCTTGTCACAGTACGC 59.140 57.895 0.00 0.00 0.00 4.42
2354 2682 1.566018 GCACCTTGTCACAGTACGCC 61.566 60.000 0.00 0.00 0.00 5.68
2355 2683 0.249699 CACCTTGTCACAGTACGCCA 60.250 55.000 0.00 0.00 0.00 5.69
2356 2684 0.685097 ACCTTGTCACAGTACGCCAT 59.315 50.000 0.00 0.00 0.00 4.40
2357 2685 1.071699 ACCTTGTCACAGTACGCCATT 59.928 47.619 0.00 0.00 0.00 3.16
2358 2686 2.300723 ACCTTGTCACAGTACGCCATTA 59.699 45.455 0.00 0.00 0.00 1.90
2359 2687 2.671396 CCTTGTCACAGTACGCCATTAC 59.329 50.000 0.00 0.00 0.00 1.89
2360 2688 3.585862 CTTGTCACAGTACGCCATTACT 58.414 45.455 0.00 0.00 32.16 2.24
2361 2689 4.381185 CCTTGTCACAGTACGCCATTACTA 60.381 45.833 0.00 0.00 30.76 1.82
2362 2690 4.365899 TGTCACAGTACGCCATTACTAG 57.634 45.455 0.00 0.00 30.76 2.57
2363 2691 3.760151 TGTCACAGTACGCCATTACTAGT 59.240 43.478 0.00 0.00 30.76 2.57
2364 2692 4.219070 TGTCACAGTACGCCATTACTAGTT 59.781 41.667 0.00 0.00 30.76 2.24
2365 2693 5.166398 GTCACAGTACGCCATTACTAGTTT 58.834 41.667 0.00 0.00 30.76 2.66
2366 2694 6.072008 TGTCACAGTACGCCATTACTAGTTTA 60.072 38.462 0.00 0.00 30.76 2.01
2367 2695 6.808212 GTCACAGTACGCCATTACTAGTTTAA 59.192 38.462 0.00 0.00 30.76 1.52
2368 2696 7.329226 GTCACAGTACGCCATTACTAGTTTAAA 59.671 37.037 0.00 0.00 30.76 1.52
2369 2697 7.329226 TCACAGTACGCCATTACTAGTTTAAAC 59.671 37.037 10.47 10.47 30.76 2.01
2370 2698 7.330208 CACAGTACGCCATTACTAGTTTAAACT 59.670 37.037 23.58 23.58 42.91 2.66
2371 2699 8.522830 ACAGTACGCCATTACTAGTTTAAACTA 58.477 33.333 23.31 23.31 40.37 2.24
2372 2700 8.801913 CAGTACGCCATTACTAGTTTAAACTAC 58.198 37.037 21.52 11.48 40.37 2.73
2373 2701 8.743714 AGTACGCCATTACTAGTTTAAACTACT 58.256 33.333 21.52 15.73 40.37 2.57
2381 2709 6.898912 ACTAGTTTAAACTACTAATGGCGC 57.101 37.500 21.52 0.00 40.37 6.53
2382 2710 6.400568 ACTAGTTTAAACTACTAATGGCGCA 58.599 36.000 21.52 2.02 40.37 6.09
2383 2711 5.541098 AGTTTAAACTACTAATGGCGCAC 57.459 39.130 19.26 0.00 37.52 5.34
2384 2712 5.243207 AGTTTAAACTACTAATGGCGCACT 58.757 37.500 19.26 0.00 37.52 4.40
2385 2713 5.704053 AGTTTAAACTACTAATGGCGCACTT 59.296 36.000 19.26 4.06 37.52 3.16
2386 2714 6.206048 AGTTTAAACTACTAATGGCGCACTTT 59.794 34.615 19.26 6.01 37.52 2.66
2387 2715 6.563222 TTAAACTACTAATGGCGCACTTTT 57.437 33.333 10.83 0.00 0.00 2.27
2388 2716 4.680171 AACTACTAATGGCGCACTTTTC 57.320 40.909 10.83 0.00 0.00 2.29
2389 2717 3.007635 ACTACTAATGGCGCACTTTTCC 58.992 45.455 10.83 0.00 0.00 3.13
2390 2718 1.904287 ACTAATGGCGCACTTTTCCA 58.096 45.000 10.83 0.00 0.00 3.53
2391 2719 1.539827 ACTAATGGCGCACTTTTCCAC 59.460 47.619 10.83 0.00 31.94 4.02
2392 2720 1.539388 CTAATGGCGCACTTTTCCACA 59.461 47.619 10.83 0.00 31.94 4.17
2393 2721 0.314935 AATGGCGCACTTTTCCACAG 59.685 50.000 10.83 0.00 31.94 3.66
2394 2722 0.823356 ATGGCGCACTTTTCCACAGT 60.823 50.000 10.83 0.00 31.94 3.55
2395 2723 1.008538 GGCGCACTTTTCCACAGTG 60.009 57.895 10.83 0.00 43.99 3.66
2398 2726 4.614673 CACTTTTCCACAGTGCGC 57.385 55.556 0.00 0.00 35.52 6.09
2399 2727 1.008538 CACTTTTCCACAGTGCGCC 60.009 57.895 4.18 0.00 35.52 6.53
2400 2728 1.453015 ACTTTTCCACAGTGCGCCA 60.453 52.632 4.18 0.00 0.00 5.69
2401 2729 0.823356 ACTTTTCCACAGTGCGCCAT 60.823 50.000 4.18 0.00 0.00 4.40
2402 2730 0.314935 CTTTTCCACAGTGCGCCATT 59.685 50.000 4.18 0.00 0.00 3.16
2403 2731 1.539388 CTTTTCCACAGTGCGCCATTA 59.461 47.619 4.18 0.00 0.00 1.90
2404 2732 1.164411 TTTCCACAGTGCGCCATTAG 58.836 50.000 4.18 0.00 0.00 1.73
2405 2733 0.036164 TTCCACAGTGCGCCATTAGT 59.964 50.000 4.18 0.00 0.00 2.24
2406 2734 0.899019 TCCACAGTGCGCCATTAGTA 59.101 50.000 4.18 0.00 0.00 1.82
2407 2735 1.484653 TCCACAGTGCGCCATTAGTAT 59.515 47.619 4.18 0.00 0.00 2.12
2408 2736 2.696187 TCCACAGTGCGCCATTAGTATA 59.304 45.455 4.18 0.00 0.00 1.47
2409 2737 3.323691 TCCACAGTGCGCCATTAGTATAT 59.676 43.478 4.18 0.00 0.00 0.86
2410 2738 4.525100 TCCACAGTGCGCCATTAGTATATA 59.475 41.667 4.18 0.00 0.00 0.86
2411 2739 5.186992 TCCACAGTGCGCCATTAGTATATAT 59.813 40.000 4.18 0.00 0.00 0.86
2412 2740 6.378848 TCCACAGTGCGCCATTAGTATATATA 59.621 38.462 4.18 0.00 0.00 0.86
2413 2741 7.069455 TCCACAGTGCGCCATTAGTATATATAT 59.931 37.037 4.18 0.00 0.00 0.86
2414 2742 8.357402 CCACAGTGCGCCATTAGTATATATATA 58.643 37.037 4.18 0.00 0.00 0.86
2415 2743 9.914131 CACAGTGCGCCATTAGTATATATATAT 57.086 33.333 4.18 10.10 0.00 0.86
2450 2778 7.803724 ACTTTTCTACAAAACTACTAATGGCG 58.196 34.615 0.00 0.00 0.00 5.69
2451 2779 5.789710 TTCTACAAAACTACTAATGGCGC 57.210 39.130 0.00 0.00 0.00 6.53
2452 2780 4.823157 TCTACAAAACTACTAATGGCGCA 58.177 39.130 10.83 0.00 0.00 6.09
2453 2781 3.824414 ACAAAACTACTAATGGCGCAC 57.176 42.857 10.83 0.00 0.00 5.34
2454 2782 2.486592 ACAAAACTACTAATGGCGCACC 59.513 45.455 10.83 0.00 0.00 5.01
2473 2801 2.438254 CCTGCAGGTGCGCCATTA 60.438 61.111 25.53 2.47 45.83 1.90
2474 2802 2.475466 CCTGCAGGTGCGCCATTAG 61.475 63.158 25.53 12.45 45.83 1.73
2475 2803 1.746615 CTGCAGGTGCGCCATTAGT 60.747 57.895 20.59 0.00 45.83 2.24
2476 2804 0.461870 CTGCAGGTGCGCCATTAGTA 60.462 55.000 20.59 3.95 45.83 1.82
2477 2805 0.035915 TGCAGGTGCGCCATTAGTAA 60.036 50.000 20.59 0.00 45.83 2.24
2478 2806 0.377203 GCAGGTGCGCCATTAGTAAC 59.623 55.000 20.59 0.00 37.19 2.50
2479 2807 1.014352 CAGGTGCGCCATTAGTAACC 58.986 55.000 20.59 2.44 37.19 2.85
2480 2808 0.616371 AGGTGCGCCATTAGTAACCA 59.384 50.000 20.59 0.00 37.19 3.67
2481 2809 1.014352 GGTGCGCCATTAGTAACCAG 58.986 55.000 12.58 0.00 34.09 4.00
2482 2810 1.014352 GTGCGCCATTAGTAACCAGG 58.986 55.000 4.18 0.00 0.00 4.45
2483 2811 0.107410 TGCGCCATTAGTAACCAGGG 60.107 55.000 4.18 0.00 0.00 4.45
2484 2812 0.107361 GCGCCATTAGTAACCAGGGT 60.107 55.000 0.00 0.00 0.00 4.34
2485 2813 1.680860 GCGCCATTAGTAACCAGGGTT 60.681 52.381 8.97 8.97 41.65 4.11
2486 2814 2.420408 GCGCCATTAGTAACCAGGGTTA 60.420 50.000 6.82 6.82 39.31 2.85
2495 2823 2.413310 AACCAGGGTTACTAATGGCG 57.587 50.000 0.90 0.00 36.46 5.69
2496 2824 0.107361 ACCAGGGTTACTAATGGCGC 60.107 55.000 0.00 0.00 36.21 6.53
2497 2825 0.107410 CCAGGGTTACTAATGGCGCA 60.107 55.000 10.83 0.00 0.00 6.09
2498 2826 1.476833 CCAGGGTTACTAATGGCGCAT 60.477 52.381 10.83 0.00 0.00 4.73
2499 2827 2.297701 CAGGGTTACTAATGGCGCATT 58.702 47.619 10.83 9.96 37.80 3.56
2500 2828 2.687935 CAGGGTTACTAATGGCGCATTT 59.312 45.455 10.83 4.27 35.54 2.32
2501 2829 2.687935 AGGGTTACTAATGGCGCATTTG 59.312 45.455 10.83 10.65 35.54 2.32
2502 2830 2.459934 GGTTACTAATGGCGCATTTGC 58.540 47.619 10.83 0.00 35.54 3.68
2503 2831 2.099098 GGTTACTAATGGCGCATTTGCT 59.901 45.455 10.83 2.94 39.32 3.91
2504 2832 3.108144 GTTACTAATGGCGCATTTGCTG 58.892 45.455 10.83 0.19 39.32 4.41
2505 2833 0.457035 ACTAATGGCGCATTTGCTGG 59.543 50.000 10.83 0.00 39.32 4.85
2506 2834 0.457035 CTAATGGCGCATTTGCTGGT 59.543 50.000 10.83 0.00 39.32 4.00
2507 2835 0.173029 TAATGGCGCATTTGCTGGTG 59.827 50.000 10.83 0.00 39.32 4.17
2508 2836 2.510064 AATGGCGCATTTGCTGGTGG 62.510 55.000 10.83 0.00 39.32 4.61
2509 2837 3.683937 GGCGCATTTGCTGGTGGT 61.684 61.111 10.83 0.00 39.32 4.16
2510 2838 2.431260 GCGCATTTGCTGGTGGTG 60.431 61.111 0.30 0.00 39.32 4.17
2511 2839 2.431260 CGCATTTGCTGGTGGTGC 60.431 61.111 0.51 0.00 39.32 5.01
2512 2840 2.431260 GCATTTGCTGGTGGTGCG 60.431 61.111 0.00 0.00 38.21 5.34
2513 2841 2.431260 CATTTGCTGGTGGTGCGC 60.431 61.111 0.00 0.00 0.00 6.09
2514 2842 3.683937 ATTTGCTGGTGGTGCGCC 61.684 61.111 10.11 10.11 34.12 6.53
2524 2852 3.162448 TGGTGCGCCATTAGTAACC 57.838 52.632 16.89 3.18 40.46 2.85
2525 2853 0.616371 TGGTGCGCCATTAGTAACCT 59.384 50.000 16.89 0.00 40.46 3.50
2526 2854 1.014352 GGTGCGCCATTAGTAACCTG 58.986 55.000 12.58 0.00 34.09 4.00
2527 2855 1.014352 GTGCGCCATTAGTAACCTGG 58.986 55.000 4.18 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.095300 CAGGGCAGTTGATTGAACACATAATA 59.905 38.462 0.00 0.00 36.98 0.98
11 12 1.270550 CCAGGGCAGTTGATTGAACAC 59.729 52.381 0.00 0.00 36.98 3.32
22 23 2.382770 TTGTCACCACCAGGGCAGT 61.383 57.895 0.00 0.00 42.05 4.40
47 48 3.938653 TCGATCCTCGATTGGTTCG 57.061 52.632 14.74 14.74 44.82 3.95
56 57 1.996292 TGTTTGCTTCTCGATCCTCG 58.004 50.000 0.00 0.00 42.10 4.63
57 58 4.378874 CCTTTTGTTTGCTTCTCGATCCTC 60.379 45.833 0.00 0.00 0.00 3.71
58 59 3.503748 CCTTTTGTTTGCTTCTCGATCCT 59.496 43.478 0.00 0.00 0.00 3.24
59 60 3.253432 ACCTTTTGTTTGCTTCTCGATCC 59.747 43.478 0.00 0.00 0.00 3.36
60 61 4.489679 ACCTTTTGTTTGCTTCTCGATC 57.510 40.909 0.00 0.00 0.00 3.69
95 96 4.336280 AGATTTAACCACTTGAAGGCCTC 58.664 43.478 5.23 0.00 0.00 4.70
169 172 4.737578 TCCAGTCCCATACCTCAGTATAC 58.262 47.826 0.00 0.00 37.06 1.47
214 218 1.218316 GCCACTCGGGTAAGACAGG 59.782 63.158 0.00 0.00 39.65 4.00
216 220 2.642254 CGGCCACTCGGGTAAGACA 61.642 63.158 2.24 0.00 39.65 3.41
278 283 0.782384 GTTGCACGTACTGACTTCCG 59.218 55.000 0.00 0.00 0.00 4.30
288 293 2.735478 CCGGAAGCGTTGCACGTA 60.735 61.111 0.00 0.00 44.73 3.57
352 360 2.041405 GGAGGGCTAGCTCTGGGT 60.041 66.667 25.17 0.00 0.00 4.51
355 363 1.836604 GAGGGGAGGGCTAGCTCTG 60.837 68.421 25.17 0.00 0.00 3.35
370 378 0.312416 CCGTTGAGCTATCTCGGAGG 59.688 60.000 4.96 0.00 42.11 4.30
415 423 4.828925 GCAGGCAGGCGAGTCCTC 62.829 72.222 0.00 0.00 45.52 3.71
470 478 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
471 479 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
472 480 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
473 481 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
474 482 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
475 483 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
476 484 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
477 485 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
479 487 2.036475 CCGGAGAGAGAGAGAGAGAGAG 59.964 59.091 0.00 0.00 0.00 3.20
480 488 2.039418 CCGGAGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
481 489 1.762957 ACCGGAGAGAGAGAGAGAGAG 59.237 57.143 9.46 0.00 0.00 3.20
483 491 1.475034 CCACCGGAGAGAGAGAGAGAG 60.475 61.905 9.46 0.00 0.00 3.20
485 493 0.544223 TCCACCGGAGAGAGAGAGAG 59.456 60.000 9.46 0.00 0.00 3.20
487 495 2.065899 AATCCACCGGAGAGAGAGAG 57.934 55.000 9.46 0.00 34.05 3.20
489 497 3.265791 CAAAAATCCACCGGAGAGAGAG 58.734 50.000 9.46 0.00 34.05 3.20
491 499 2.359900 CCAAAAATCCACCGGAGAGAG 58.640 52.381 9.46 0.00 34.05 3.20
493 501 1.271926 ACCCAAAAATCCACCGGAGAG 60.272 52.381 9.46 0.00 34.05 3.20
495 503 1.627864 AACCCAAAAATCCACCGGAG 58.372 50.000 9.46 0.00 34.05 4.63
508 522 1.075836 CGTGGATCCCCAAACCCAA 59.924 57.895 9.90 0.00 45.59 4.12
513 528 2.305607 CCTCCCGTGGATCCCCAAA 61.306 63.158 9.90 0.00 45.59 3.28
560 576 2.279517 CGGGCCGATCGGAGAAAG 60.280 66.667 37.64 18.17 43.58 2.62
587 616 2.052237 GTTGCCGCTTCGTGTGTG 60.052 61.111 0.00 0.00 0.00 3.82
642 701 2.445845 CGGGGATCCCTAGCACCA 60.446 66.667 30.08 0.00 42.67 4.17
643 720 3.242291 CCGGGGATCCCTAGCACC 61.242 72.222 30.08 11.48 42.67 5.01
683 774 3.172575 CGCACCTACGTCACTGCG 61.173 66.667 16.19 16.19 45.67 5.18
701 937 2.737180 AGGTGACTCCTGCACGTG 59.263 61.111 12.28 12.28 46.19 4.49
715 951 0.247736 GATTCGCAGGTGAGTCAGGT 59.752 55.000 0.00 0.00 0.00 4.00
716 952 0.460987 GGATTCGCAGGTGAGTCAGG 60.461 60.000 0.00 0.00 0.00 3.86
717 953 0.803768 CGGATTCGCAGGTGAGTCAG 60.804 60.000 0.00 0.39 0.00 3.51
718 954 1.215382 CGGATTCGCAGGTGAGTCA 59.785 57.895 7.50 0.00 0.00 3.41
719 955 4.094684 CGGATTCGCAGGTGAGTC 57.905 61.111 0.00 0.00 0.00 3.36
809 1045 0.523072 AGTTTCACATGGACGCATGC 59.477 50.000 7.91 7.91 36.08 4.06
815 1051 3.751698 GGTAACAGGAGTTTCACATGGAC 59.248 47.826 0.00 0.00 39.15 4.02
835 1080 1.289066 CATGTGACCACGAGACGGT 59.711 57.895 0.00 0.00 40.30 4.83
864 1114 0.392863 AACGACTATGCCATGCTGCA 60.393 50.000 4.13 4.13 46.94 4.41
871 1121 0.250510 TGGTTGCAACGACTATGCCA 60.251 50.000 22.67 10.11 43.16 4.92
873 1123 1.267532 CGATGGTTGCAACGACTATGC 60.268 52.381 22.67 8.04 44.08 3.14
874 1124 2.267426 TCGATGGTTGCAACGACTATG 58.733 47.619 22.67 10.52 0.00 2.23
875 1125 2.665649 TCGATGGTTGCAACGACTAT 57.334 45.000 22.67 13.90 0.00 2.12
948 1201 1.781786 TAGCAGAAGAGGGCAGTAGG 58.218 55.000 0.00 0.00 0.00 3.18
950 1203 4.804597 TCTTATAGCAGAAGAGGGCAGTA 58.195 43.478 0.00 0.00 0.00 2.74
955 1208 5.129485 TCAGGTTTCTTATAGCAGAAGAGGG 59.871 44.000 0.00 0.00 34.22 4.30
963 1216 6.528321 CATCCTCATCAGGTTTCTTATAGCA 58.472 40.000 0.00 0.00 41.28 3.49
1063 1345 0.249911 AGAGCGGCGAAGTTTCTTGT 60.250 50.000 12.98 0.00 0.00 3.16
1070 1352 2.762234 CCGAGTAGAGCGGCGAAGT 61.762 63.158 12.98 0.00 42.55 3.01
1077 1359 0.309302 CAGATCCACCGAGTAGAGCG 59.691 60.000 0.00 0.00 0.00 5.03
1083 1365 1.550976 GGAGAAACAGATCCACCGAGT 59.449 52.381 0.00 0.00 35.54 4.18
1090 1372 1.153147 GGCCCGGAGAAACAGATCC 60.153 63.158 0.73 0.00 0.00 3.36
1355 1653 4.500116 GGAGACAGCTCGCCGGAC 62.500 72.222 5.05 0.00 42.25 4.79
1427 1725 2.883730 GCCAACATGCGCATGCTG 60.884 61.111 42.18 38.70 42.39 4.41
1445 1743 2.426023 GGGCCGCCGATACAAGAT 59.574 61.111 2.55 0.00 0.00 2.40
1448 1746 4.823419 CACGGGCCGCCGATACAA 62.823 66.667 28.71 0.00 36.94 2.41
1492 1790 1.037493 ACACGCTGGACTACACAGAA 58.963 50.000 0.00 0.00 38.20 3.02
1496 1804 0.249322 ACACACACGCTGGACTACAC 60.249 55.000 0.00 0.00 0.00 2.90
1497 1805 1.001048 GTACACACACGCTGGACTACA 60.001 52.381 0.00 0.00 0.00 2.74
1498 1806 1.001048 TGTACACACACGCTGGACTAC 60.001 52.381 0.00 0.00 0.00 2.73
1504 1812 1.526887 CTTCCTTGTACACACACGCTG 59.473 52.381 0.00 0.00 33.30 5.18
1553 1862 1.602237 CTGGTTGCCGGTACATCCT 59.398 57.895 1.90 0.00 31.76 3.24
1705 2016 1.208052 GTGTAGCAAGAGATGGCCAGA 59.792 52.381 13.05 0.00 0.00 3.86
2080 2408 6.235231 TCTATAGCCCTTTTCCTGTTAGTG 57.765 41.667 0.00 0.00 0.00 2.74
2081 2409 7.235812 CCTATCTATAGCCCTTTTCCTGTTAGT 59.764 40.741 0.00 0.00 0.00 2.24
2082 2410 7.455008 TCCTATCTATAGCCCTTTTCCTGTTAG 59.545 40.741 0.00 0.00 0.00 2.34
2083 2411 7.310634 TCCTATCTATAGCCCTTTTCCTGTTA 58.689 38.462 0.00 0.00 0.00 2.41
2084 2412 6.151049 TCCTATCTATAGCCCTTTTCCTGTT 58.849 40.000 0.00 0.00 0.00 3.16
2085 2413 5.727630 TCCTATCTATAGCCCTTTTCCTGT 58.272 41.667 0.00 0.00 0.00 4.00
2086 2414 6.882768 ATCCTATCTATAGCCCTTTTCCTG 57.117 41.667 0.00 0.00 0.00 3.86
2087 2415 7.025620 TCAATCCTATCTATAGCCCTTTTCCT 58.974 38.462 0.00 0.00 0.00 3.36
2088 2416 7.259088 TCAATCCTATCTATAGCCCTTTTCC 57.741 40.000 0.00 0.00 0.00 3.13
2089 2417 9.825109 GTATCAATCCTATCTATAGCCCTTTTC 57.175 37.037 0.00 0.00 0.00 2.29
2090 2418 9.567702 AGTATCAATCCTATCTATAGCCCTTTT 57.432 33.333 0.00 0.00 0.00 2.27
2096 2424 9.921637 GCCATTAGTATCAATCCTATCTATAGC 57.078 37.037 0.00 0.00 0.00 2.97
2098 2426 8.577296 GCGCCATTAGTATCAATCCTATCTATA 58.423 37.037 0.00 0.00 0.00 1.31
2099 2427 7.069950 TGCGCCATTAGTATCAATCCTATCTAT 59.930 37.037 4.18 0.00 0.00 1.98
2100 2428 6.379988 TGCGCCATTAGTATCAATCCTATCTA 59.620 38.462 4.18 0.00 0.00 1.98
2101 2429 5.187772 TGCGCCATTAGTATCAATCCTATCT 59.812 40.000 4.18 0.00 0.00 1.98
2102 2430 5.292101 GTGCGCCATTAGTATCAATCCTATC 59.708 44.000 4.18 0.00 0.00 2.08
2103 2431 5.178797 GTGCGCCATTAGTATCAATCCTAT 58.821 41.667 4.18 0.00 0.00 2.57
2104 2432 4.562757 GGTGCGCCATTAGTATCAATCCTA 60.563 45.833 12.58 0.00 34.09 2.94
2105 2433 3.403038 GTGCGCCATTAGTATCAATCCT 58.597 45.455 4.18 0.00 0.00 3.24
2106 2434 2.484264 GGTGCGCCATTAGTATCAATCC 59.516 50.000 12.58 0.00 34.09 3.01
2107 2435 3.138304 TGGTGCGCCATTAGTATCAATC 58.862 45.455 16.89 0.00 40.46 2.67
2108 2436 3.141398 CTGGTGCGCCATTAGTATCAAT 58.859 45.455 21.54 0.00 45.05 2.57
2109 2437 2.560504 CTGGTGCGCCATTAGTATCAA 58.439 47.619 21.54 0.00 45.05 2.57
2110 2438 1.202639 CCTGGTGCGCCATTAGTATCA 60.203 52.381 21.54 0.00 45.05 2.15
2111 2439 1.202651 ACCTGGTGCGCCATTAGTATC 60.203 52.381 21.54 0.00 45.05 2.24
2112 2440 0.837272 ACCTGGTGCGCCATTAGTAT 59.163 50.000 21.54 0.00 45.05 2.12
2113 2441 1.487300 TACCTGGTGCGCCATTAGTA 58.513 50.000 21.54 18.10 45.05 1.82
2114 2442 0.616371 TTACCTGGTGCGCCATTAGT 59.384 50.000 21.54 19.13 45.05 2.24
2115 2443 1.299541 CTTACCTGGTGCGCCATTAG 58.700 55.000 21.54 14.16 45.05 1.73
2116 2444 0.616371 ACTTACCTGGTGCGCCATTA 59.384 50.000 21.54 11.51 45.05 1.90
2117 2445 0.616371 TACTTACCTGGTGCGCCATT 59.384 50.000 21.54 12.61 45.05 3.16
2118 2446 0.178068 CTACTTACCTGGTGCGCCAT 59.822 55.000 21.54 8.76 45.05 4.40
2119 2447 1.189524 ACTACTTACCTGGTGCGCCA 61.190 55.000 19.93 19.93 43.73 5.69
2120 2448 0.739813 CACTACTTACCTGGTGCGCC 60.740 60.000 10.11 10.11 0.00 6.53
2121 2449 1.359459 GCACTACTTACCTGGTGCGC 61.359 60.000 10.23 0.00 43.91 6.09
2122 2450 2.750815 GCACTACTTACCTGGTGCG 58.249 57.895 10.23 2.49 43.91 5.34
2124 2452 0.739813 GGCGCACTACTTACCTGGTG 60.740 60.000 10.83 0.00 0.00 4.17
2125 2453 1.189524 TGGCGCACTACTTACCTGGT 61.190 55.000 10.83 4.05 0.00 4.00
2126 2454 0.739813 GTGGCGCACTACTTACCTGG 60.740 60.000 10.83 0.00 0.00 4.45
2127 2455 0.246635 AGTGGCGCACTACTTACCTG 59.753 55.000 10.83 0.00 43.46 4.00
2128 2456 1.843368 TAGTGGCGCACTACTTACCT 58.157 50.000 10.83 0.00 43.46 3.08
2135 2463 7.066645 CCATTAGTATATAGTAGTGGCGCACTA 59.933 40.741 20.32 12.49 43.46 2.74
2137 2465 6.034591 CCATTAGTATATAGTAGTGGCGCAC 58.965 44.000 20.32 5.73 33.88 5.34
2138 2466 6.203808 CCATTAGTATATAGTAGTGGCGCA 57.796 41.667 20.32 0.00 33.88 6.09
2142 2470 6.034591 GTGCGCCATTAGTATATAGTAGTGG 58.965 44.000 24.81 24.81 40.19 4.00
2143 2471 6.034591 GGTGCGCCATTAGTATATAGTAGTG 58.965 44.000 12.58 11.39 34.09 2.74
2144 2472 5.713389 TGGTGCGCCATTAGTATATAGTAGT 59.287 40.000 16.89 0.00 40.46 2.73
2145 2473 6.095021 TCTGGTGCGCCATTAGTATATAGTAG 59.905 42.308 21.54 2.54 45.05 2.57
2146 2474 5.947566 TCTGGTGCGCCATTAGTATATAGTA 59.052 40.000 21.54 0.00 45.05 1.82
2147 2475 4.770531 TCTGGTGCGCCATTAGTATATAGT 59.229 41.667 21.54 0.00 45.05 2.12
2148 2476 5.103000 GTCTGGTGCGCCATTAGTATATAG 58.897 45.833 21.54 3.82 45.05 1.31
2149 2477 4.525100 TGTCTGGTGCGCCATTAGTATATA 59.475 41.667 21.54 0.00 45.05 0.86
2150 2478 3.323691 TGTCTGGTGCGCCATTAGTATAT 59.676 43.478 21.54 0.00 45.05 0.86
2151 2479 2.696187 TGTCTGGTGCGCCATTAGTATA 59.304 45.455 21.54 0.00 45.05 1.47
2152 2480 1.484653 TGTCTGGTGCGCCATTAGTAT 59.515 47.619 21.54 0.00 45.05 2.12
2153 2481 0.899019 TGTCTGGTGCGCCATTAGTA 59.101 50.000 21.54 2.02 45.05 1.82
2154 2482 0.673644 GTGTCTGGTGCGCCATTAGT 60.674 55.000 21.54 0.00 45.05 2.24
2155 2483 0.673333 TGTGTCTGGTGCGCCATTAG 60.673 55.000 21.54 8.73 45.05 1.73
2156 2484 0.953471 GTGTGTCTGGTGCGCCATTA 60.953 55.000 21.54 8.54 45.05 1.90
2157 2485 2.112928 TGTGTCTGGTGCGCCATT 59.887 55.556 21.54 0.00 45.05 3.16
2158 2486 2.669569 GTGTGTCTGGTGCGCCAT 60.670 61.111 21.54 0.00 45.05 4.40
2169 2497 3.851845 TAGTGGCGCACCGTGTGTC 62.852 63.158 10.83 9.79 39.70 3.67
2170 2498 3.858868 CTAGTGGCGCACCGTGTGT 62.859 63.158 10.83 0.00 39.70 3.72
2171 2499 2.480853 TACTAGTGGCGCACCGTGTG 62.481 60.000 10.83 7.76 39.70 3.82
2172 2500 1.601419 ATACTAGTGGCGCACCGTGT 61.601 55.000 10.83 4.70 39.70 4.49
2173 2501 0.459585 AATACTAGTGGCGCACCGTG 60.460 55.000 10.83 0.00 39.70 4.94
2174 2502 1.105457 TAATACTAGTGGCGCACCGT 58.895 50.000 10.83 8.47 39.70 4.83
2175 2503 2.212869 TTAATACTAGTGGCGCACCG 57.787 50.000 10.83 2.80 39.70 4.94
2176 2504 5.494632 AAAATTAATACTAGTGGCGCACC 57.505 39.130 10.83 0.00 34.49 5.01
2201 2529 8.349245 CGCCATTAGTATGTATGGAAAAATGAA 58.651 33.333 5.34 0.00 43.25 2.57
2202 2530 7.521423 GCGCCATTAGTATGTATGGAAAAATGA 60.521 37.037 0.00 0.00 43.25 2.57
2203 2531 6.582295 GCGCCATTAGTATGTATGGAAAAATG 59.418 38.462 0.00 0.00 43.25 2.32
2204 2532 6.264292 TGCGCCATTAGTATGTATGGAAAAAT 59.736 34.615 4.18 0.00 43.25 1.82
2205 2533 5.590663 TGCGCCATTAGTATGTATGGAAAAA 59.409 36.000 4.18 0.00 43.25 1.94
2206 2534 5.126779 TGCGCCATTAGTATGTATGGAAAA 58.873 37.500 4.18 0.00 43.25 2.29
2207 2535 4.709250 TGCGCCATTAGTATGTATGGAAA 58.291 39.130 4.18 0.00 43.25 3.13
2208 2536 4.344359 TGCGCCATTAGTATGTATGGAA 57.656 40.909 4.18 0.00 43.25 3.53
2209 2537 4.020662 TCATGCGCCATTAGTATGTATGGA 60.021 41.667 4.18 0.00 43.25 3.41
2210 2538 4.252878 TCATGCGCCATTAGTATGTATGG 58.747 43.478 4.18 0.00 43.40 2.74
2211 2539 4.330894 CCTCATGCGCCATTAGTATGTATG 59.669 45.833 4.18 0.00 34.16 2.39
2212 2540 4.020218 ACCTCATGCGCCATTAGTATGTAT 60.020 41.667 4.18 0.00 34.16 2.29
2213 2541 3.323691 ACCTCATGCGCCATTAGTATGTA 59.676 43.478 4.18 0.00 34.16 2.29
2214 2542 2.104792 ACCTCATGCGCCATTAGTATGT 59.895 45.455 4.18 0.00 34.16 2.29
2215 2543 2.738846 GACCTCATGCGCCATTAGTATG 59.261 50.000 4.18 0.00 33.85 2.39
2216 2544 2.610479 CGACCTCATGCGCCATTAGTAT 60.610 50.000 4.18 0.00 0.00 2.12
2217 2545 1.269569 CGACCTCATGCGCCATTAGTA 60.270 52.381 4.18 0.00 0.00 1.82
2218 2546 0.530650 CGACCTCATGCGCCATTAGT 60.531 55.000 4.18 0.00 0.00 2.24
2219 2547 0.249447 TCGACCTCATGCGCCATTAG 60.249 55.000 4.18 0.00 0.00 1.73
2220 2548 0.176910 TTCGACCTCATGCGCCATTA 59.823 50.000 4.18 0.00 0.00 1.90
2221 2549 1.078497 TTCGACCTCATGCGCCATT 60.078 52.632 4.18 0.00 0.00 3.16
2222 2550 1.522355 CTTCGACCTCATGCGCCAT 60.522 57.895 4.18 0.00 0.00 4.40
2223 2551 2.125552 CTTCGACCTCATGCGCCA 60.126 61.111 4.18 0.00 0.00 5.69
2224 2552 2.125512 ACTTCGACCTCATGCGCC 60.126 61.111 4.18 0.00 0.00 6.53
2225 2553 3.084579 CACTTCGACCTCATGCGC 58.915 61.111 0.00 0.00 0.00 6.09
2226 2554 3.084579 GCACTTCGACCTCATGCG 58.915 61.111 0.00 0.00 0.00 4.73
2227 2555 3.084579 CGCACTTCGACCTCATGC 58.915 61.111 0.00 0.00 41.67 4.06
2228 2556 2.456119 GGCGCACTTCGACCTCATG 61.456 63.158 10.83 0.00 41.34 3.07
2229 2557 2.125512 GGCGCACTTCGACCTCAT 60.126 61.111 10.83 0.00 41.34 2.90
2235 2563 1.475280 ACTAGTAATGGCGCACTTCGA 59.525 47.619 10.83 0.00 41.67 3.71
2236 2564 1.922570 ACTAGTAATGGCGCACTTCG 58.077 50.000 10.83 1.57 42.12 3.79
2237 2565 3.522553 AGAACTAGTAATGGCGCACTTC 58.477 45.455 10.83 0.00 0.00 3.01
2238 2566 3.611766 AGAACTAGTAATGGCGCACTT 57.388 42.857 10.83 4.06 0.00 3.16
2239 2567 4.159879 AGTTAGAACTAGTAATGGCGCACT 59.840 41.667 10.83 6.53 37.52 4.40
2240 2568 4.430908 AGTTAGAACTAGTAATGGCGCAC 58.569 43.478 10.83 0.00 37.52 5.34
2241 2569 4.730949 AGTTAGAACTAGTAATGGCGCA 57.269 40.909 10.83 0.00 37.52 6.09
2251 2579 7.224000 GGTGCGCCATTACTAGTTAGAACTAG 61.224 46.154 22.30 22.30 46.85 2.57
2252 2580 5.450965 GGTGCGCCATTACTAGTTAGAACTA 60.451 44.000 12.58 2.30 36.21 2.24
2253 2581 4.430908 GTGCGCCATTACTAGTTAGAACT 58.569 43.478 4.18 0.00 42.91 3.01
2254 2582 3.554731 GGTGCGCCATTACTAGTTAGAAC 59.445 47.826 12.58 0.00 34.09 3.01
2255 2583 3.735820 CGGTGCGCCATTACTAGTTAGAA 60.736 47.826 18.18 0.00 34.09 2.10
2256 2584 2.223641 CGGTGCGCCATTACTAGTTAGA 60.224 50.000 18.18 0.00 34.09 2.10
2257 2585 2.124903 CGGTGCGCCATTACTAGTTAG 58.875 52.381 18.18 0.00 34.09 2.34
2258 2586 1.477700 ACGGTGCGCCATTACTAGTTA 59.522 47.619 18.18 0.00 34.09 2.24
2259 2587 0.248289 ACGGTGCGCCATTACTAGTT 59.752 50.000 18.18 0.00 34.09 2.24
2260 2588 0.459585 CACGGTGCGCCATTACTAGT 60.460 55.000 18.18 0.00 34.09 2.57
2261 2589 1.762222 GCACGGTGCGCCATTACTAG 61.762 60.000 18.35 0.00 31.71 2.57
2262 2590 1.812093 GCACGGTGCGCCATTACTA 60.812 57.895 18.35 0.00 31.71 1.82
2263 2591 3.124921 GCACGGTGCGCCATTACT 61.125 61.111 18.35 0.00 31.71 2.24
2279 2607 1.021390 ACTAATGGCGCACTGTCTGC 61.021 55.000 10.83 0.00 43.21 4.26
2280 2608 2.293677 TACTAATGGCGCACTGTCTG 57.706 50.000 10.83 0.00 0.00 3.51
2281 2609 3.543680 AATACTAATGGCGCACTGTCT 57.456 42.857 10.83 0.00 0.00 3.41
2282 2610 4.616181 AAAATACTAATGGCGCACTGTC 57.384 40.909 10.83 0.00 0.00 3.51
2313 2641 4.446051 GCGCCATTAGTAGTTTTGCAAAAA 59.554 37.500 25.40 9.18 0.00 1.94
2314 2642 3.984633 GCGCCATTAGTAGTTTTGCAAAA 59.015 39.130 20.46 20.46 0.00 2.44
2315 2643 3.004839 TGCGCCATTAGTAGTTTTGCAAA 59.995 39.130 8.05 8.05 0.00 3.68
2316 2644 2.554462 TGCGCCATTAGTAGTTTTGCAA 59.446 40.909 4.18 0.00 0.00 4.08
2317 2645 2.095466 GTGCGCCATTAGTAGTTTTGCA 60.095 45.455 4.18 0.00 0.00 4.08
2318 2646 2.515912 GTGCGCCATTAGTAGTTTTGC 58.484 47.619 4.18 0.00 0.00 3.68
2319 2647 2.747446 AGGTGCGCCATTAGTAGTTTTG 59.253 45.455 20.59 0.00 37.19 2.44
2320 2648 3.067684 AGGTGCGCCATTAGTAGTTTT 57.932 42.857 20.59 0.00 37.19 2.43
2321 2649 2.747446 CAAGGTGCGCCATTAGTAGTTT 59.253 45.455 20.59 0.00 37.19 2.66
2322 2650 2.290071 ACAAGGTGCGCCATTAGTAGTT 60.290 45.455 20.59 0.00 37.19 2.24
2323 2651 1.278127 ACAAGGTGCGCCATTAGTAGT 59.722 47.619 20.59 2.86 37.19 2.73
2324 2652 1.933853 GACAAGGTGCGCCATTAGTAG 59.066 52.381 20.59 2.21 37.19 2.57
2325 2653 1.276705 TGACAAGGTGCGCCATTAGTA 59.723 47.619 20.59 0.00 37.19 1.82
2326 2654 0.036164 TGACAAGGTGCGCCATTAGT 59.964 50.000 20.59 10.79 37.19 2.24
2327 2655 0.447801 GTGACAAGGTGCGCCATTAG 59.552 55.000 20.59 7.40 37.19 1.73
2328 2656 0.250510 TGTGACAAGGTGCGCCATTA 60.251 50.000 20.59 0.00 37.19 1.90
2329 2657 1.518056 CTGTGACAAGGTGCGCCATT 61.518 55.000 20.59 7.13 37.19 3.16
2330 2658 1.968017 CTGTGACAAGGTGCGCCAT 60.968 57.895 20.59 2.72 37.19 4.40
2331 2659 2.034048 TACTGTGACAAGGTGCGCCA 62.034 55.000 20.59 0.00 37.19 5.69
2332 2660 1.301401 TACTGTGACAAGGTGCGCC 60.301 57.895 8.71 8.71 0.00 6.53
2333 2661 1.860078 GTACTGTGACAAGGTGCGC 59.140 57.895 0.00 0.00 0.00 6.09
2334 2662 1.886861 GCGTACTGTGACAAGGTGCG 61.887 60.000 10.21 10.21 40.77 5.34
2335 2663 1.566018 GGCGTACTGTGACAAGGTGC 61.566 60.000 0.00 0.00 0.00 5.01
2336 2664 0.249699 TGGCGTACTGTGACAAGGTG 60.250 55.000 0.00 0.00 0.00 4.00
2337 2665 0.685097 ATGGCGTACTGTGACAAGGT 59.315 50.000 0.00 0.00 0.00 3.50
2338 2666 1.808411 AATGGCGTACTGTGACAAGG 58.192 50.000 0.00 0.00 0.00 3.61
2339 2667 3.585862 AGTAATGGCGTACTGTGACAAG 58.414 45.455 0.29 0.00 32.97 3.16
2340 2668 3.671008 AGTAATGGCGTACTGTGACAA 57.329 42.857 0.29 0.00 32.97 3.18
2341 2669 3.760151 ACTAGTAATGGCGTACTGTGACA 59.240 43.478 10.11 0.00 35.85 3.58
2342 2670 4.367386 ACTAGTAATGGCGTACTGTGAC 57.633 45.455 10.11 0.00 35.85 3.67
2343 2671 5.395682 AAACTAGTAATGGCGTACTGTGA 57.604 39.130 10.11 0.00 35.85 3.58
2344 2672 7.330208 AGTTTAAACTAGTAATGGCGTACTGTG 59.670 37.037 19.26 6.31 37.52 3.66
2345 2673 7.381323 AGTTTAAACTAGTAATGGCGTACTGT 58.619 34.615 19.26 4.86 37.52 3.55
2346 2674 7.823149 AGTTTAAACTAGTAATGGCGTACTG 57.177 36.000 19.26 4.37 37.52 2.74
2347 2675 8.743714 AGTAGTTTAAACTAGTAATGGCGTACT 58.256 33.333 27.03 16.54 41.96 2.73
2348 2676 8.917415 AGTAGTTTAAACTAGTAATGGCGTAC 57.083 34.615 27.03 14.89 41.96 3.67
2357 2685 7.489113 GTGCGCCATTAGTAGTTTAAACTAGTA 59.511 37.037 27.84 27.84 41.96 1.82
2358 2686 6.312180 GTGCGCCATTAGTAGTTTAAACTAGT 59.688 38.462 29.49 29.49 44.87 2.57
2359 2687 6.534079 AGTGCGCCATTAGTAGTTTAAACTAG 59.466 38.462 24.97 14.71 41.81 2.57
2360 2688 6.400568 AGTGCGCCATTAGTAGTTTAAACTA 58.599 36.000 21.52 21.52 40.37 2.24
2361 2689 5.243207 AGTGCGCCATTAGTAGTTTAAACT 58.757 37.500 23.58 23.58 42.91 2.66
2362 2690 5.541098 AGTGCGCCATTAGTAGTTTAAAC 57.459 39.130 10.47 10.47 0.00 2.01
2363 2691 6.563222 AAAGTGCGCCATTAGTAGTTTAAA 57.437 33.333 4.18 0.00 0.00 1.52
2364 2692 6.348704 GGAAAAGTGCGCCATTAGTAGTTTAA 60.349 38.462 4.18 0.00 0.00 1.52
2365 2693 5.122711 GGAAAAGTGCGCCATTAGTAGTTTA 59.877 40.000 4.18 0.00 0.00 2.01
2366 2694 4.082949 GGAAAAGTGCGCCATTAGTAGTTT 60.083 41.667 4.18 0.00 0.00 2.66
2367 2695 3.439129 GGAAAAGTGCGCCATTAGTAGTT 59.561 43.478 4.18 0.00 0.00 2.24
2368 2696 3.007635 GGAAAAGTGCGCCATTAGTAGT 58.992 45.455 4.18 0.00 0.00 2.73
2369 2697 3.006940 TGGAAAAGTGCGCCATTAGTAG 58.993 45.455 4.18 0.00 0.00 2.57
2370 2698 2.745281 GTGGAAAAGTGCGCCATTAGTA 59.255 45.455 4.18 0.00 33.66 1.82
2371 2699 1.539827 GTGGAAAAGTGCGCCATTAGT 59.460 47.619 4.18 0.00 33.66 2.24
2372 2700 1.539388 TGTGGAAAAGTGCGCCATTAG 59.461 47.619 4.18 0.00 33.66 1.73
2373 2701 1.539388 CTGTGGAAAAGTGCGCCATTA 59.461 47.619 4.18 0.00 33.66 1.90
2374 2702 0.314935 CTGTGGAAAAGTGCGCCATT 59.685 50.000 4.18 0.00 33.66 3.16
2375 2703 0.823356 ACTGTGGAAAAGTGCGCCAT 60.823 50.000 4.18 0.00 28.95 4.40
2376 2704 1.453015 ACTGTGGAAAAGTGCGCCA 60.453 52.632 4.18 0.00 28.95 5.69
2377 2705 1.008538 CACTGTGGAAAAGTGCGCC 60.009 57.895 4.18 0.00 46.77 6.53
2378 2706 4.614673 CACTGTGGAAAAGTGCGC 57.385 55.556 0.00 0.00 46.77 6.09
2382 2710 0.823356 ATGGCGCACTGTGGAAAAGT 60.823 50.000 10.83 0.00 31.48 2.66
2383 2711 0.314935 AATGGCGCACTGTGGAAAAG 59.685 50.000 10.83 0.00 0.00 2.27
2384 2712 1.539388 CTAATGGCGCACTGTGGAAAA 59.461 47.619 10.83 0.00 0.00 2.29
2385 2713 1.164411 CTAATGGCGCACTGTGGAAA 58.836 50.000 10.83 0.00 0.00 3.13
2386 2714 0.036164 ACTAATGGCGCACTGTGGAA 59.964 50.000 10.83 0.00 0.00 3.53
2387 2715 0.899019 TACTAATGGCGCACTGTGGA 59.101 50.000 10.83 0.00 0.00 4.02
2388 2716 1.953559 ATACTAATGGCGCACTGTGG 58.046 50.000 10.83 1.00 0.00 4.17
2389 2717 9.914131 ATATATATATACTAATGGCGCACTGTG 57.086 33.333 10.83 2.76 0.00 3.66
2424 2752 8.928733 CGCCATTAGTAGTTTTGTAGAAAAGTA 58.071 33.333 8.22 8.22 36.36 2.24
2425 2753 7.572539 GCGCCATTAGTAGTTTTGTAGAAAAGT 60.573 37.037 10.03 10.03 38.16 2.66
2426 2754 6.741358 GCGCCATTAGTAGTTTTGTAGAAAAG 59.259 38.462 0.00 0.00 31.57 2.27
2427 2755 6.205076 TGCGCCATTAGTAGTTTTGTAGAAAA 59.795 34.615 4.18 0.00 0.00 2.29
2428 2756 5.701750 TGCGCCATTAGTAGTTTTGTAGAAA 59.298 36.000 4.18 0.00 0.00 2.52
2429 2757 5.121142 GTGCGCCATTAGTAGTTTTGTAGAA 59.879 40.000 4.18 0.00 0.00 2.10
2430 2758 4.628333 GTGCGCCATTAGTAGTTTTGTAGA 59.372 41.667 4.18 0.00 0.00 2.59
2431 2759 4.201783 GGTGCGCCATTAGTAGTTTTGTAG 60.202 45.833 12.58 0.00 34.09 2.74
2432 2760 3.685756 GGTGCGCCATTAGTAGTTTTGTA 59.314 43.478 12.58 0.00 34.09 2.41
2433 2761 2.486592 GGTGCGCCATTAGTAGTTTTGT 59.513 45.455 12.58 0.00 34.09 2.83
2434 2762 2.486203 TGGTGCGCCATTAGTAGTTTTG 59.514 45.455 16.89 0.00 40.46 2.44
2435 2763 2.785562 TGGTGCGCCATTAGTAGTTTT 58.214 42.857 16.89 0.00 40.46 2.43
2436 2764 2.483014 TGGTGCGCCATTAGTAGTTT 57.517 45.000 16.89 0.00 40.46 2.66
2456 2784 2.438254 TAATGGCGCACCTGCAGG 60.438 61.111 31.60 31.60 42.21 4.85
2457 2785 0.461870 TACTAATGGCGCACCTGCAG 60.462 55.000 10.83 6.78 42.21 4.41
2458 2786 0.035915 TTACTAATGGCGCACCTGCA 60.036 50.000 10.83 0.00 42.21 4.41
2459 2787 0.377203 GTTACTAATGGCGCACCTGC 59.623 55.000 10.83 0.00 36.63 4.85
2460 2788 1.014352 GGTTACTAATGGCGCACCTG 58.986 55.000 10.83 0.00 36.63 4.00
2461 2789 0.616371 TGGTTACTAATGGCGCACCT 59.384 50.000 10.83 0.00 36.63 4.00
2462 2790 1.014352 CTGGTTACTAATGGCGCACC 58.986 55.000 10.83 5.96 0.00 5.01
2463 2791 1.014352 CCTGGTTACTAATGGCGCAC 58.986 55.000 10.83 0.00 0.00 5.34
2464 2792 0.107410 CCCTGGTTACTAATGGCGCA 60.107 55.000 10.83 0.00 0.00 6.09
2465 2793 0.107361 ACCCTGGTTACTAATGGCGC 60.107 55.000 0.00 0.00 0.00 6.53
2466 2794 2.413310 AACCCTGGTTACTAATGGCG 57.587 50.000 0.00 0.00 36.46 5.69
2475 2803 2.420408 GCGCCATTAGTAACCCTGGTTA 60.420 50.000 4.66 4.66 39.31 2.85
2476 2804 1.680860 GCGCCATTAGTAACCCTGGTT 60.681 52.381 6.81 6.81 41.65 3.67
2477 2805 0.107361 GCGCCATTAGTAACCCTGGT 60.107 55.000 0.00 0.00 0.00 4.00
2478 2806 0.107410 TGCGCCATTAGTAACCCTGG 60.107 55.000 4.18 0.00 0.00 4.45
2479 2807 1.967319 ATGCGCCATTAGTAACCCTG 58.033 50.000 4.18 0.00 0.00 4.45
2480 2808 2.687935 CAAATGCGCCATTAGTAACCCT 59.312 45.455 4.18 0.00 32.43 4.34
2481 2809 2.798145 GCAAATGCGCCATTAGTAACCC 60.798 50.000 4.18 0.00 32.43 4.11
2482 2810 2.459934 GCAAATGCGCCATTAGTAACC 58.540 47.619 4.18 0.00 32.43 2.85
2495 2823 2.431260 CGCACCACCAGCAAATGC 60.431 61.111 0.00 0.00 42.49 3.56
2496 2824 2.431260 GCGCACCACCAGCAAATG 60.431 61.111 0.30 0.00 0.00 2.32
2497 2825 3.683937 GGCGCACCACCAGCAAAT 61.684 61.111 10.83 0.00 35.26 2.32
2507 2835 1.014352 CAGGTTACTAATGGCGCACC 58.986 55.000 10.83 5.29 0.00 5.01
2508 2836 1.014352 CCAGGTTACTAATGGCGCAC 58.986 55.000 10.83 0.00 0.00 5.34
2509 2837 3.469564 CCAGGTTACTAATGGCGCA 57.530 52.632 10.83 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.