Multiple sequence alignment - TraesCS5B01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G305100 chr5B 100.000 4935 0 0 1 4935 489277831 489282765 0.000000e+00 9114.0
1 TraesCS5B01G305100 chr5B 87.744 767 58 9 841 1607 6448 7178 0.000000e+00 863.0
2 TraesCS5B01G305100 chr5B 86.667 540 35 12 841 1380 411 913 9.270000e-157 564.0
3 TraesCS5B01G305100 chr5B 81.250 144 26 1 239 381 27314963 27315106 1.120000e-21 115.0
4 TraesCS5B01G305100 chr5B 74.713 261 43 17 99 338 568795076 568795334 1.460000e-15 95.3
5 TraesCS5B01G305100 chr5A 91.881 4582 261 45 412 4935 513840754 513845282 0.000000e+00 6298.0
6 TraesCS5B01G305100 chr5D 91.694 4611 205 55 412 4930 407962017 407966541 0.000000e+00 6229.0
7 TraesCS5B01G305100 chr5D 75.711 387 49 26 35 381 39814076 39813695 8.560000e-33 152.0
8 TraesCS5B01G305100 chr5D 75.072 349 54 21 63 381 214642878 214642533 1.110000e-26 132.0
9 TraesCS5B01G305100 chr7B 90.157 447 43 1 1161 1607 541713935 541714380 9.210000e-162 580.0
10 TraesCS5B01G305100 chr7B 86.268 284 21 12 738 1020 541713617 541713883 4.830000e-75 292.0
11 TraesCS5B01G305100 chr7B 89.600 125 4 2 612 736 541711966 541712081 3.080000e-32 150.0
12 TraesCS5B01G305100 chr7B 73.723 411 72 20 3 379 506608616 506609024 1.440000e-25 128.0
13 TraesCS5B01G305100 chr7B 96.000 50 2 0 1083 1132 541713880 541713929 1.140000e-11 82.4
14 TraesCS5B01G305100 chr7B 94.872 39 2 0 549 587 541711888 541711926 1.480000e-05 62.1
15 TraesCS5B01G305100 chr4A 85.551 526 40 8 797 1322 686621164 686620675 7.320000e-143 518.0
16 TraesCS5B01G305100 chr4A 89.347 291 31 0 1317 1607 686618902 686618612 2.810000e-97 366.0
17 TraesCS5B01G305100 chr4A 90.000 100 3 2 697 795 686621516 686621423 6.710000e-24 122.0
18 TraesCS5B01G305100 chr4A 74.221 353 62 13 3 337 577438934 577439275 2.410000e-23 121.0
19 TraesCS5B01G305100 chr7A 75.663 415 60 21 3 379 645107014 645106603 8.500000e-38 169.0
20 TraesCS5B01G305100 chr1B 74.818 413 69 14 2 381 60610522 60610112 2.380000e-33 154.0
21 TraesCS5B01G305100 chr1B 74.274 241 46 11 154 381 676875282 676875519 2.450000e-13 87.9
22 TraesCS5B01G305100 chr2D 74.124 371 53 23 35 367 340281716 340282081 4.040000e-21 113.0
23 TraesCS5B01G305100 chr4B 74.267 307 51 17 99 381 650692763 650692461 2.430000e-18 104.0
24 TraesCS5B01G305100 chr6D 73.955 311 50 13 99 381 464065636 464065329 4.070000e-16 97.1
25 TraesCS5B01G305100 chr7D 77.778 162 14 9 63 202 126465052 126465213 4.100000e-11 80.5
26 TraesCS5B01G305100 chr2A 74.059 239 38 10 15 232 699604586 699604821 5.300000e-10 76.8
27 TraesCS5B01G305100 chr3A 90.196 51 4 1 58 108 637287356 637287405 1.150000e-06 65.8
28 TraesCS5B01G305100 chr6B 77.477 111 18 5 100 207 497432566 497432672 5.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G305100 chr5B 489277831 489282765 4934 False 9114.000000 9114 100.000000 1 4935 1 chr5B.!!$F4 4934
1 TraesCS5B01G305100 chr5B 6448 7178 730 False 863.000000 863 87.744000 841 1607 1 chr5B.!!$F2 766
2 TraesCS5B01G305100 chr5B 411 913 502 False 564.000000 564 86.667000 841 1380 1 chr5B.!!$F1 539
3 TraesCS5B01G305100 chr5A 513840754 513845282 4528 False 6298.000000 6298 91.881000 412 4935 1 chr5A.!!$F1 4523
4 TraesCS5B01G305100 chr5D 407962017 407966541 4524 False 6229.000000 6229 91.694000 412 4930 1 chr5D.!!$F1 4518
5 TraesCS5B01G305100 chr7B 541711888 541714380 2492 False 233.300000 580 91.379400 549 1607 5 chr7B.!!$F2 1058
6 TraesCS5B01G305100 chr4A 686618612 686621516 2904 True 335.333333 518 88.299333 697 1607 3 chr4A.!!$R1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.041312 CGACCCAAACGTGAAAGCAG 60.041 55.0 0.00 0.0 0.00 4.24 F
391 392 0.106149 GTAGTTGCTATCCCGTGGGG 59.894 60.0 4.81 0.0 46.11 4.96 F
409 410 0.396139 GGATTGGGAAGGCTGCATGA 60.396 55.0 0.50 0.0 0.00 3.07 F
431 432 0.461548 CCGGCTGTAGATGCTCTGAA 59.538 55.0 0.00 0.0 0.00 3.02 F
1742 5363 0.470341 GAGGACAGAATAGGGGGCAC 59.530 60.0 0.00 0.0 0.00 5.01 F
2174 5802 0.522180 GCATCATAGCTGCTGCCATC 59.478 55.0 13.43 0.0 38.32 3.51 F
2433 6066 0.538287 AAGAAGTGTGCAAGGCCCTC 60.538 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 5328 0.554792 CCTCAAGGATGGGGCTTGAT 59.445 55.000 0.00 0.00 41.30 2.57 R
2122 5743 0.617820 TGAAGTACTCCAGGAGGGGC 60.618 60.000 21.31 9.89 39.93 5.80 R
2333 5966 0.954452 CACCTTGTTCTCCTGGTTGC 59.046 55.000 0.00 0.00 0.00 4.17 R
2433 6066 4.141779 TGTCATCTCATCTCACCATCAAGG 60.142 45.833 0.00 0.00 45.67 3.61 R
3127 6789 1.005748 CCTGAGCTCTTCACACGCA 60.006 57.895 16.19 0.00 0.00 5.24 R
3360 7022 1.029681 GCCCACCTTGTCTTTCGTTT 58.970 50.000 0.00 0.00 0.00 3.60 R
4221 7903 0.039527 ACGGTCAATTCGCCAAAAGC 60.040 50.000 0.00 0.00 38.52 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.373116 ACAACCCGCGCTCGACAT 62.373 61.111 5.56 0.00 38.10 3.06
28 29 3.853330 CAACCCGCGCTCGACATG 61.853 66.667 5.56 0.00 38.10 3.21
29 30 4.063967 AACCCGCGCTCGACATGA 62.064 61.111 5.56 0.00 38.10 3.07
30 31 3.583276 AACCCGCGCTCGACATGAA 62.583 57.895 5.56 0.00 38.10 2.57
31 32 3.554692 CCCGCGCTCGACATGAAC 61.555 66.667 5.56 0.00 38.10 3.18
32 33 3.902063 CCGCGCTCGACATGAACG 61.902 66.667 5.56 5.16 39.16 3.95
35 36 3.554692 CGCTCGACATGAACGCCC 61.555 66.667 0.00 0.00 28.26 6.13
36 37 3.554692 GCTCGACATGAACGCCCG 61.555 66.667 0.00 0.00 0.00 6.13
37 38 3.554692 CTCGACATGAACGCCCGC 61.555 66.667 0.00 0.00 0.00 6.13
38 39 3.989698 CTCGACATGAACGCCCGCT 62.990 63.158 0.00 0.00 0.00 5.52
39 40 3.853330 CGACATGAACGCCCGCTG 61.853 66.667 0.00 0.00 0.00 5.18
40 41 3.499737 GACATGAACGCCCGCTGG 61.500 66.667 0.00 0.00 0.00 4.85
41 42 3.950794 GACATGAACGCCCGCTGGA 62.951 63.158 0.00 0.00 0.00 3.86
42 43 3.197790 CATGAACGCCCGCTGGAG 61.198 66.667 0.00 0.00 37.48 3.86
49 50 4.783621 GCCCGCTGGAGCATGACA 62.784 66.667 0.00 0.00 42.21 3.58
50 51 2.191375 CCCGCTGGAGCATGACAT 59.809 61.111 0.00 0.00 42.21 3.06
51 52 1.452651 CCCGCTGGAGCATGACATT 60.453 57.895 0.00 0.00 42.21 2.71
52 53 1.442526 CCCGCTGGAGCATGACATTC 61.443 60.000 0.00 0.00 42.21 2.67
53 54 1.640069 CGCTGGAGCATGACATTCG 59.360 57.895 0.00 0.00 42.21 3.34
54 55 1.354506 GCTGGAGCATGACATTCGC 59.645 57.895 0.00 0.00 41.59 4.70
55 56 1.371337 GCTGGAGCATGACATTCGCA 61.371 55.000 0.00 0.00 41.59 5.10
56 57 1.306148 CTGGAGCATGACATTCGCAT 58.694 50.000 0.00 0.00 0.00 4.73
57 58 1.002792 CTGGAGCATGACATTCGCATG 60.003 52.381 0.00 0.00 44.52 4.06
58 59 0.309922 GGAGCATGACATTCGCATGG 59.690 55.000 0.00 0.00 42.53 3.66
59 60 0.317603 GAGCATGACATTCGCATGGC 60.318 55.000 0.00 0.00 42.53 4.40
63 64 2.108568 TGACATTCGCATGGCATGG 58.891 52.632 27.48 17.60 44.21 3.66
64 65 1.299620 GACATTCGCATGGCATGGC 60.300 57.895 27.48 18.31 38.49 4.40
81 82 4.457496 CCCTGTGCCGACGCTCAT 62.457 66.667 0.00 0.00 37.82 2.90
82 83 2.887568 CCTGTGCCGACGCTCATC 60.888 66.667 0.00 0.00 37.82 2.92
83 84 3.250323 CTGTGCCGACGCTCATCG 61.250 66.667 0.00 0.00 45.38 3.84
84 85 3.683587 CTGTGCCGACGCTCATCGA 62.684 63.158 3.74 0.00 45.13 3.59
85 86 3.248171 GTGCCGACGCTCATCGAC 61.248 66.667 3.74 0.00 45.13 4.20
86 87 4.492160 TGCCGACGCTCATCGACC 62.492 66.667 3.74 0.00 45.13 4.79
87 88 4.194720 GCCGACGCTCATCGACCT 62.195 66.667 3.74 0.00 45.13 3.85
88 89 2.024871 CCGACGCTCATCGACCTC 59.975 66.667 3.74 0.00 45.13 3.85
89 90 2.761195 CCGACGCTCATCGACCTCA 61.761 63.158 3.74 0.00 45.13 3.86
90 91 1.583967 CGACGCTCATCGACCTCAC 60.584 63.158 0.00 0.00 45.13 3.51
91 92 1.226717 GACGCTCATCGACCTCACC 60.227 63.158 0.00 0.00 41.67 4.02
92 93 2.278206 CGCTCATCGACCTCACCG 60.278 66.667 0.00 0.00 41.67 4.94
93 94 2.761195 CGCTCATCGACCTCACCGA 61.761 63.158 0.00 0.00 41.67 4.69
94 95 1.226717 GCTCATCGACCTCACCGAC 60.227 63.158 0.00 0.00 38.97 4.79
95 96 1.433879 CTCATCGACCTCACCGACC 59.566 63.158 0.00 0.00 38.97 4.79
96 97 2.005960 CTCATCGACCTCACCGACCC 62.006 65.000 0.00 0.00 38.97 4.46
97 98 2.052690 CATCGACCTCACCGACCCT 61.053 63.158 0.00 0.00 38.97 4.34
98 99 2.052690 ATCGACCTCACCGACCCTG 61.053 63.158 0.00 0.00 38.97 4.45
99 100 2.494777 ATCGACCTCACCGACCCTGA 62.495 60.000 0.00 0.00 38.97 3.86
100 101 2.971452 GACCTCACCGACCCTGAC 59.029 66.667 0.00 0.00 0.00 3.51
101 102 2.989824 ACCTCACCGACCCTGACG 60.990 66.667 0.00 0.00 0.00 4.35
102 103 2.675423 CCTCACCGACCCTGACGA 60.675 66.667 0.00 0.00 0.00 4.20
103 104 2.567049 CTCACCGACCCTGACGAC 59.433 66.667 0.00 0.00 0.00 4.34
104 105 3.324099 CTCACCGACCCTGACGACG 62.324 68.421 0.00 0.00 0.00 5.12
105 106 3.359523 CACCGACCCTGACGACGA 61.360 66.667 0.00 0.00 0.00 4.20
106 107 3.360340 ACCGACCCTGACGACGAC 61.360 66.667 0.00 0.00 0.00 4.34
107 108 4.456253 CCGACCCTGACGACGACG 62.456 72.222 5.58 5.58 45.75 5.12
109 110 4.773117 GACCCTGACGACGACGCC 62.773 72.222 7.30 0.00 43.96 5.68
111 112 3.129502 CCCTGACGACGACGCCTA 61.130 66.667 7.30 0.00 43.96 3.93
112 113 2.403987 CCTGACGACGACGCCTAG 59.596 66.667 7.30 3.32 43.96 3.02
113 114 2.403987 CTGACGACGACGCCTAGG 59.596 66.667 3.67 3.67 43.96 3.02
114 115 3.109612 CTGACGACGACGCCTAGGG 62.110 68.421 11.72 3.13 43.96 3.53
115 116 4.549516 GACGACGACGCCTAGGGC 62.550 72.222 11.72 1.76 46.75 5.19
132 133 3.490759 CAGCACGCCGCCTTGTAG 61.491 66.667 0.00 0.00 44.04 2.74
135 136 2.183300 CACGCCGCCTTGTAGCTA 59.817 61.111 0.00 0.00 0.00 3.32
136 137 1.878522 CACGCCGCCTTGTAGCTAG 60.879 63.158 0.00 0.00 0.00 3.42
137 138 2.962253 CGCCGCCTTGTAGCTAGC 60.962 66.667 6.62 6.62 0.00 3.42
138 139 2.501610 GCCGCCTTGTAGCTAGCT 59.498 61.111 23.12 23.12 0.00 3.32
139 140 1.592939 GCCGCCTTGTAGCTAGCTC 60.593 63.158 23.26 13.51 0.00 4.09
140 141 1.816537 CCGCCTTGTAGCTAGCTCA 59.183 57.895 23.26 16.04 0.00 4.26
141 142 0.390860 CCGCCTTGTAGCTAGCTCAT 59.609 55.000 23.26 0.00 0.00 2.90
142 143 1.202580 CCGCCTTGTAGCTAGCTCATT 60.203 52.381 23.26 0.00 0.00 2.57
143 144 2.555199 CGCCTTGTAGCTAGCTCATTT 58.445 47.619 23.26 0.00 0.00 2.32
144 145 2.939103 CGCCTTGTAGCTAGCTCATTTT 59.061 45.455 23.26 0.00 0.00 1.82
145 146 3.375299 CGCCTTGTAGCTAGCTCATTTTT 59.625 43.478 23.26 0.00 0.00 1.94
146 147 4.570772 CGCCTTGTAGCTAGCTCATTTTTA 59.429 41.667 23.26 0.00 0.00 1.52
147 148 5.237344 CGCCTTGTAGCTAGCTCATTTTTAT 59.763 40.000 23.26 0.00 0.00 1.40
148 149 6.433766 GCCTTGTAGCTAGCTCATTTTTATG 58.566 40.000 23.26 3.48 0.00 1.90
149 150 6.038714 GCCTTGTAGCTAGCTCATTTTTATGT 59.961 38.462 23.26 0.00 0.00 2.29
150 151 7.415653 GCCTTGTAGCTAGCTCATTTTTATGTT 60.416 37.037 23.26 0.00 0.00 2.71
151 152 7.912250 CCTTGTAGCTAGCTCATTTTTATGTTG 59.088 37.037 23.26 0.00 0.00 3.33
152 153 7.320443 TGTAGCTAGCTCATTTTTATGTTGG 57.680 36.000 23.26 0.00 0.00 3.77
153 154 7.109501 TGTAGCTAGCTCATTTTTATGTTGGA 58.890 34.615 23.26 0.00 0.00 3.53
154 155 7.775093 TGTAGCTAGCTCATTTTTATGTTGGAT 59.225 33.333 23.26 0.00 0.00 3.41
155 156 7.035840 AGCTAGCTCATTTTTATGTTGGATG 57.964 36.000 12.68 0.00 0.00 3.51
156 157 6.604795 AGCTAGCTCATTTTTATGTTGGATGT 59.395 34.615 12.68 0.00 0.00 3.06
157 158 6.694411 GCTAGCTCATTTTTATGTTGGATGTG 59.306 38.462 7.70 0.00 0.00 3.21
158 159 5.969423 AGCTCATTTTTATGTTGGATGTGG 58.031 37.500 0.00 0.00 0.00 4.17
159 160 5.716228 AGCTCATTTTTATGTTGGATGTGGA 59.284 36.000 0.00 0.00 0.00 4.02
160 161 5.807011 GCTCATTTTTATGTTGGATGTGGAC 59.193 40.000 0.00 0.00 0.00 4.02
161 162 5.948588 TCATTTTTATGTTGGATGTGGACG 58.051 37.500 0.00 0.00 0.00 4.79
162 163 3.840890 TTTTATGTTGGATGTGGACGC 57.159 42.857 0.00 0.00 0.00 5.19
163 164 1.364721 TTATGTTGGATGTGGACGCG 58.635 50.000 3.53 3.53 0.00 6.01
164 165 0.248012 TATGTTGGATGTGGACGCGT 59.752 50.000 13.85 13.85 0.00 6.01
165 166 1.298157 ATGTTGGATGTGGACGCGTG 61.298 55.000 20.70 0.00 0.00 5.34
166 167 1.666553 GTTGGATGTGGACGCGTGA 60.667 57.895 20.70 0.00 0.00 4.35
167 168 1.069935 TTGGATGTGGACGCGTGAA 59.930 52.632 20.70 0.00 0.00 3.18
168 169 1.225376 TTGGATGTGGACGCGTGAAC 61.225 55.000 20.70 15.65 0.00 3.18
169 170 1.374252 GGATGTGGACGCGTGAACT 60.374 57.895 20.70 4.56 0.00 3.01
170 171 0.108992 GGATGTGGACGCGTGAACTA 60.109 55.000 20.70 0.00 0.00 2.24
171 172 1.470979 GGATGTGGACGCGTGAACTAT 60.471 52.381 20.70 10.56 0.00 2.12
172 173 1.852895 GATGTGGACGCGTGAACTATC 59.147 52.381 20.70 15.06 0.00 2.08
173 174 0.455464 TGTGGACGCGTGAACTATCG 60.455 55.000 20.70 0.00 0.00 2.92
178 179 3.006706 GCGTGAACTATCGCCAGC 58.993 61.111 0.00 0.00 45.54 4.85
179 180 2.526120 GCGTGAACTATCGCCAGCC 61.526 63.158 0.00 0.00 45.54 4.85
180 181 1.141881 CGTGAACTATCGCCAGCCT 59.858 57.895 0.00 0.00 32.24 4.58
181 182 0.460284 CGTGAACTATCGCCAGCCTT 60.460 55.000 0.00 0.00 32.24 4.35
182 183 1.291132 GTGAACTATCGCCAGCCTTC 58.709 55.000 0.00 0.00 0.00 3.46
183 184 0.179111 TGAACTATCGCCAGCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
184 185 0.179108 GAACTATCGCCAGCCTTCGT 60.179 55.000 0.00 0.00 0.00 3.85
185 186 0.460284 AACTATCGCCAGCCTTCGTG 60.460 55.000 0.00 0.00 0.00 4.35
186 187 1.592669 CTATCGCCAGCCTTCGTGG 60.593 63.158 0.00 0.00 38.21 4.94
195 196 2.983592 CCTTCGTGGCCGGCTTTT 60.984 61.111 28.56 0.00 33.95 2.27
196 197 1.673009 CCTTCGTGGCCGGCTTTTA 60.673 57.895 28.56 7.23 33.95 1.52
197 198 1.029947 CCTTCGTGGCCGGCTTTTAT 61.030 55.000 28.56 0.00 33.95 1.40
198 199 0.098728 CTTCGTGGCCGGCTTTTATG 59.901 55.000 28.56 15.36 33.95 1.90
199 200 0.606944 TTCGTGGCCGGCTTTTATGT 60.607 50.000 28.56 0.00 33.95 2.29
200 201 0.606944 TCGTGGCCGGCTTTTATGTT 60.607 50.000 28.56 0.00 33.95 2.71
201 202 0.242555 CGTGGCCGGCTTTTATGTTT 59.757 50.000 28.56 0.00 0.00 2.83
202 203 1.708822 GTGGCCGGCTTTTATGTTTG 58.291 50.000 28.56 0.00 0.00 2.93
203 204 1.271102 GTGGCCGGCTTTTATGTTTGA 59.729 47.619 28.56 0.00 0.00 2.69
204 205 2.094234 GTGGCCGGCTTTTATGTTTGAT 60.094 45.455 28.56 0.00 0.00 2.57
205 206 2.564947 TGGCCGGCTTTTATGTTTGATT 59.435 40.909 28.56 0.00 0.00 2.57
206 207 3.764434 TGGCCGGCTTTTATGTTTGATTA 59.236 39.130 28.56 0.00 0.00 1.75
207 208 4.404073 TGGCCGGCTTTTATGTTTGATTAT 59.596 37.500 28.56 0.00 0.00 1.28
208 209 5.594725 TGGCCGGCTTTTATGTTTGATTATA 59.405 36.000 28.56 0.00 0.00 0.98
209 210 6.266558 TGGCCGGCTTTTATGTTTGATTATAT 59.733 34.615 28.56 0.00 0.00 0.86
210 211 6.586082 GGCCGGCTTTTATGTTTGATTATATG 59.414 38.462 28.56 0.00 0.00 1.78
211 212 7.145323 GCCGGCTTTTATGTTTGATTATATGT 58.855 34.615 22.15 0.00 0.00 2.29
212 213 7.651704 GCCGGCTTTTATGTTTGATTATATGTT 59.348 33.333 22.15 0.00 0.00 2.71
213 214 9.528018 CCGGCTTTTATGTTTGATTATATGTTT 57.472 29.630 0.00 0.00 0.00 2.83
255 256 5.382573 TTTTTGCGCTGTTAAAATGTGTC 57.617 34.783 9.73 0.00 0.00 3.67
256 257 2.308347 TGCGCTGTTAAAATGTGTCG 57.692 45.000 9.73 0.00 0.00 4.35
257 258 1.069568 TGCGCTGTTAAAATGTGTCGG 60.070 47.619 9.73 0.00 0.00 4.79
258 259 1.727857 GCGCTGTTAAAATGTGTCGGG 60.728 52.381 0.00 0.00 0.00 5.14
259 260 1.727857 CGCTGTTAAAATGTGTCGGGC 60.728 52.381 0.00 0.00 0.00 6.13
260 261 1.402325 GCTGTTAAAATGTGTCGGGCC 60.402 52.381 0.00 0.00 0.00 5.80
261 262 1.883275 CTGTTAAAATGTGTCGGGCCA 59.117 47.619 4.39 0.00 0.00 5.36
262 263 1.883275 TGTTAAAATGTGTCGGGCCAG 59.117 47.619 4.39 0.00 0.00 4.85
263 264 1.883926 GTTAAAATGTGTCGGGCCAGT 59.116 47.619 4.39 0.00 0.00 4.00
264 265 1.529226 TAAAATGTGTCGGGCCAGTG 58.471 50.000 4.39 0.00 0.00 3.66
265 266 0.467290 AAAATGTGTCGGGCCAGTGT 60.467 50.000 4.39 0.00 0.00 3.55
266 267 0.467290 AAATGTGTCGGGCCAGTGTT 60.467 50.000 4.39 0.00 0.00 3.32
267 268 1.172180 AATGTGTCGGGCCAGTGTTG 61.172 55.000 4.39 0.00 0.00 3.33
269 270 4.263572 TGTCGGGCCAGTGTTGGG 62.264 66.667 4.39 0.00 45.16 4.12
275 276 4.424566 GCCAGTGTTGGGCGCATG 62.425 66.667 10.83 0.00 45.16 4.06
276 277 2.985282 CCAGTGTTGGGCGCATGT 60.985 61.111 10.83 0.00 41.05 3.21
277 278 2.256158 CAGTGTTGGGCGCATGTG 59.744 61.111 10.83 0.66 0.00 3.21
278 279 2.203337 AGTGTTGGGCGCATGTGT 60.203 55.556 10.83 0.00 0.00 3.72
279 280 2.255252 GTGTTGGGCGCATGTGTC 59.745 61.111 10.83 4.97 0.00 3.67
280 281 3.353029 TGTTGGGCGCATGTGTCG 61.353 61.111 10.83 0.00 0.00 4.35
281 282 3.047280 GTTGGGCGCATGTGTCGA 61.047 61.111 10.83 0.00 0.00 4.20
282 283 3.047280 TTGGGCGCATGTGTCGAC 61.047 61.111 10.83 9.11 0.00 4.20
286 287 3.047280 GCGCATGTGTCGACCCAA 61.047 61.111 14.12 0.00 0.00 4.12
287 288 2.612567 GCGCATGTGTCGACCCAAA 61.613 57.895 14.12 0.00 0.00 3.28
288 289 1.206578 CGCATGTGTCGACCCAAAC 59.793 57.895 14.12 4.86 0.00 2.93
289 290 1.206578 GCATGTGTCGACCCAAACG 59.793 57.895 14.12 2.17 0.00 3.60
290 291 1.503818 GCATGTGTCGACCCAAACGT 61.504 55.000 14.12 2.67 0.00 3.99
291 292 0.234625 CATGTGTCGACCCAAACGTG 59.765 55.000 14.12 11.93 0.00 4.49
292 293 0.105224 ATGTGTCGACCCAAACGTGA 59.895 50.000 14.12 0.00 0.00 4.35
293 294 0.108281 TGTGTCGACCCAAACGTGAA 60.108 50.000 14.12 0.00 0.00 3.18
294 295 1.008329 GTGTCGACCCAAACGTGAAA 58.992 50.000 14.12 0.00 0.00 2.69
295 296 1.004292 GTGTCGACCCAAACGTGAAAG 60.004 52.381 14.12 0.00 0.00 2.62
296 297 0.041576 GTCGACCCAAACGTGAAAGC 60.042 55.000 3.51 0.00 0.00 3.51
297 298 0.462225 TCGACCCAAACGTGAAAGCA 60.462 50.000 0.00 0.00 0.00 3.91
298 299 0.041312 CGACCCAAACGTGAAAGCAG 60.041 55.000 0.00 0.00 0.00 4.24
299 300 1.305201 GACCCAAACGTGAAAGCAGA 58.695 50.000 0.00 0.00 0.00 4.26
300 301 1.002792 GACCCAAACGTGAAAGCAGAC 60.003 52.381 0.00 0.00 0.00 3.51
301 302 0.041312 CCCAAACGTGAAAGCAGACG 60.041 55.000 0.00 0.00 41.41 4.18
305 306 3.355816 ACGTGAAAGCAGACGTTGA 57.644 47.368 0.00 0.00 46.27 3.18
306 307 1.865865 ACGTGAAAGCAGACGTTGAT 58.134 45.000 0.00 0.00 46.27 2.57
307 308 1.526887 ACGTGAAAGCAGACGTTGATG 59.473 47.619 0.00 0.00 46.27 3.07
308 309 1.526887 CGTGAAAGCAGACGTTGATGT 59.473 47.619 0.00 0.00 0.00 3.06
309 310 2.410262 CGTGAAAGCAGACGTTGATGTC 60.410 50.000 0.00 0.00 39.21 3.06
310 311 2.096218 GTGAAAGCAGACGTTGATGTCC 60.096 50.000 0.00 0.00 39.77 4.02
311 312 1.126846 GAAAGCAGACGTTGATGTCCG 59.873 52.381 0.00 0.00 39.77 4.79
312 313 1.291877 AAGCAGACGTTGATGTCCGC 61.292 55.000 3.87 3.87 41.52 5.54
313 314 2.740714 GCAGACGTTGATGTCCGCC 61.741 63.158 0.00 0.00 39.77 6.13
314 315 2.126071 AGACGTTGATGTCCGCCG 60.126 61.111 0.00 0.00 39.77 6.46
315 316 3.186047 GACGTTGATGTCCGCCGG 61.186 66.667 0.00 0.00 32.61 6.13
316 317 3.636313 GACGTTGATGTCCGCCGGA 62.636 63.158 5.05 0.00 32.61 5.14
324 325 4.090588 GTCCGCCGGACCAATCCA 62.091 66.667 25.64 0.00 46.19 3.41
325 326 3.323286 TCCGCCGGACCAATCCAA 61.323 61.111 5.05 0.00 46.67 3.53
326 327 2.360600 CCGCCGGACCAATCCAAA 60.361 61.111 5.05 0.00 46.67 3.28
327 328 2.696759 CCGCCGGACCAATCCAAAC 61.697 63.158 5.05 0.00 46.67 2.93
328 329 2.874751 GCCGGACCAATCCAAACG 59.125 61.111 5.05 0.00 46.67 3.60
329 330 1.673009 GCCGGACCAATCCAAACGA 60.673 57.895 5.05 0.00 46.67 3.85
330 331 1.238625 GCCGGACCAATCCAAACGAA 61.239 55.000 5.05 0.00 46.67 3.85
331 332 1.459450 CCGGACCAATCCAAACGAAT 58.541 50.000 0.00 0.00 46.67 3.34
332 333 1.400494 CCGGACCAATCCAAACGAATC 59.600 52.381 0.00 0.00 46.67 2.52
333 334 2.080693 CGGACCAATCCAAACGAATCA 58.919 47.619 0.00 0.00 46.67 2.57
334 335 2.486203 CGGACCAATCCAAACGAATCAA 59.514 45.455 0.00 0.00 46.67 2.57
335 336 3.057876 CGGACCAATCCAAACGAATCAAA 60.058 43.478 0.00 0.00 46.67 2.69
336 337 4.557695 CGGACCAATCCAAACGAATCAAAA 60.558 41.667 0.00 0.00 46.67 2.44
337 338 5.293560 GGACCAATCCAAACGAATCAAAAA 58.706 37.500 0.00 0.00 45.47 1.94
338 339 5.176774 GGACCAATCCAAACGAATCAAAAAC 59.823 40.000 0.00 0.00 45.47 2.43
339 340 4.742659 ACCAATCCAAACGAATCAAAAACG 59.257 37.500 0.00 0.00 0.00 3.60
340 341 4.149747 CCAATCCAAACGAATCAAAAACGG 59.850 41.667 0.00 0.00 0.00 4.44
341 342 4.839668 ATCCAAACGAATCAAAAACGGA 57.160 36.364 0.00 0.00 0.00 4.69
342 343 3.954999 TCCAAACGAATCAAAAACGGAC 58.045 40.909 0.00 0.00 0.00 4.79
343 344 3.377485 TCCAAACGAATCAAAAACGGACA 59.623 39.130 0.00 0.00 0.00 4.02
344 345 4.106197 CCAAACGAATCAAAAACGGACAA 58.894 39.130 0.00 0.00 0.00 3.18
345 346 4.563184 CCAAACGAATCAAAAACGGACAAA 59.437 37.500 0.00 0.00 0.00 2.83
346 347 5.233263 CCAAACGAATCAAAAACGGACAAAT 59.767 36.000 0.00 0.00 0.00 2.32
347 348 6.237969 CCAAACGAATCAAAAACGGACAAATT 60.238 34.615 0.00 0.00 0.00 1.82
348 349 6.505039 AACGAATCAAAAACGGACAAATTC 57.495 33.333 0.00 0.00 0.00 2.17
349 350 4.673311 ACGAATCAAAAACGGACAAATTCG 59.327 37.500 11.66 11.66 45.58 3.34
350 351 4.673311 CGAATCAAAAACGGACAAATTCGT 59.327 37.500 0.00 0.00 39.20 3.85
351 352 5.846994 CGAATCAAAAACGGACAAATTCGTA 59.153 36.000 0.00 0.00 39.20 3.43
352 353 6.521821 CGAATCAAAAACGGACAAATTCGTAT 59.478 34.615 0.00 0.00 39.20 3.06
353 354 7.060174 CGAATCAAAAACGGACAAATTCGTATT 59.940 33.333 0.00 0.00 39.20 1.89
354 355 8.582433 AATCAAAAACGGACAAATTCGTATTT 57.418 26.923 0.00 0.00 38.78 1.40
365 366 6.553255 CAAATTCGTATTTGTTTGGATCGG 57.447 37.500 16.71 0.00 43.60 4.18
366 367 3.750639 TTCGTATTTGTTTGGATCGGC 57.249 42.857 0.00 0.00 0.00 5.54
367 368 1.661617 TCGTATTTGTTTGGATCGGCG 59.338 47.619 0.00 0.00 0.00 6.46
368 369 1.267832 CGTATTTGTTTGGATCGGCGG 60.268 52.381 7.21 0.00 0.00 6.13
369 370 1.064952 GTATTTGTTTGGATCGGCGGG 59.935 52.381 7.21 0.00 0.00 6.13
370 371 0.610785 ATTTGTTTGGATCGGCGGGT 60.611 50.000 7.21 0.00 0.00 5.28
371 372 0.824182 TTTGTTTGGATCGGCGGGTT 60.824 50.000 7.21 0.00 0.00 4.11
372 373 1.519751 TTGTTTGGATCGGCGGGTTG 61.520 55.000 7.21 0.00 0.00 3.77
373 374 1.969589 GTTTGGATCGGCGGGTTGT 60.970 57.895 7.21 0.00 0.00 3.32
374 375 0.674269 GTTTGGATCGGCGGGTTGTA 60.674 55.000 7.21 0.00 0.00 2.41
375 376 0.391927 TTTGGATCGGCGGGTTGTAG 60.392 55.000 7.21 0.00 0.00 2.74
376 377 1.546589 TTGGATCGGCGGGTTGTAGT 61.547 55.000 7.21 0.00 0.00 2.73
377 378 1.219935 GGATCGGCGGGTTGTAGTT 59.780 57.895 7.21 0.00 0.00 2.24
378 379 1.087771 GGATCGGCGGGTTGTAGTTG 61.088 60.000 7.21 0.00 0.00 3.16
379 380 1.702491 GATCGGCGGGTTGTAGTTGC 61.702 60.000 7.21 0.00 0.00 4.17
380 381 2.180159 ATCGGCGGGTTGTAGTTGCT 62.180 55.000 7.21 0.00 0.00 3.91
381 382 1.079681 CGGCGGGTTGTAGTTGCTA 60.080 57.895 0.00 0.00 0.00 3.49
382 383 0.461339 CGGCGGGTTGTAGTTGCTAT 60.461 55.000 0.00 0.00 0.00 2.97
383 384 1.296727 GGCGGGTTGTAGTTGCTATC 58.703 55.000 0.00 0.00 0.00 2.08
384 385 1.296727 GCGGGTTGTAGTTGCTATCC 58.703 55.000 0.00 0.00 0.00 2.59
385 386 1.949465 CGGGTTGTAGTTGCTATCCC 58.051 55.000 0.00 0.00 0.00 3.85
386 387 1.949465 GGGTTGTAGTTGCTATCCCG 58.051 55.000 0.00 0.00 0.00 5.14
387 388 1.208776 GGGTTGTAGTTGCTATCCCGT 59.791 52.381 0.00 0.00 0.00 5.28
388 389 2.277084 GGTTGTAGTTGCTATCCCGTG 58.723 52.381 0.00 0.00 0.00 4.94
389 390 2.277084 GTTGTAGTTGCTATCCCGTGG 58.723 52.381 0.00 0.00 0.00 4.94
390 391 0.828022 TGTAGTTGCTATCCCGTGGG 59.172 55.000 0.00 0.00 0.00 4.61
391 392 0.106149 GTAGTTGCTATCCCGTGGGG 59.894 60.000 4.81 0.00 46.11 4.96
401 402 2.275418 CCGTGGGGATTGGGAAGG 59.725 66.667 0.00 0.00 34.06 3.46
402 403 2.440247 CGTGGGGATTGGGAAGGC 60.440 66.667 0.00 0.00 0.00 4.35
403 404 2.983879 CGTGGGGATTGGGAAGGCT 61.984 63.158 0.00 0.00 0.00 4.58
404 405 1.380380 GTGGGGATTGGGAAGGCTG 60.380 63.158 0.00 0.00 0.00 4.85
405 406 2.442830 GGGGATTGGGAAGGCTGC 60.443 66.667 0.00 0.00 0.00 5.25
406 407 2.360191 GGGATTGGGAAGGCTGCA 59.640 61.111 0.50 0.00 0.00 4.41
407 408 1.075748 GGGATTGGGAAGGCTGCAT 60.076 57.895 0.50 0.00 0.00 3.96
408 409 1.397390 GGGATTGGGAAGGCTGCATG 61.397 60.000 0.50 0.00 0.00 4.06
409 410 0.396139 GGATTGGGAAGGCTGCATGA 60.396 55.000 0.50 0.00 0.00 3.07
410 411 0.743097 GATTGGGAAGGCTGCATGAC 59.257 55.000 0.50 0.00 0.00 3.06
416 417 3.984193 AAGGCTGCATGACTCCGGC 62.984 63.158 0.50 0.00 28.37 6.13
431 432 0.461548 CCGGCTGTAGATGCTCTGAA 59.538 55.000 0.00 0.00 0.00 3.02
433 434 1.929836 CGGCTGTAGATGCTCTGAAAC 59.070 52.381 0.00 0.00 0.00 2.78
489 490 2.299013 TCACAGTGACTGGCGAGTAAAT 59.701 45.455 17.92 0.00 35.51 1.40
581 589 2.256461 CACGGCAAAGCAAGGAGC 59.744 61.111 0.00 0.00 46.19 4.70
616 639 1.754234 GGTGCACCCCATCCATCAC 60.754 63.158 26.31 0.00 0.00 3.06
617 640 1.754234 GTGCACCCCATCCATCACC 60.754 63.158 5.22 0.00 0.00 4.02
793 2354 1.004277 AGCGTTCACTCCTCTCTCTCT 59.996 52.381 0.00 0.00 0.00 3.10
794 2355 1.400494 GCGTTCACTCCTCTCTCTCTC 59.600 57.143 0.00 0.00 0.00 3.20
819 2638 2.235155 GACTCACTCCCCTCTTTCTTCC 59.765 54.545 0.00 0.00 0.00 3.46
878 2699 3.123620 CAGCCCAGCTCGCTTCAC 61.124 66.667 1.95 0.00 36.40 3.18
967 2797 4.720902 TCGTCGACCCAGGGCGTA 62.721 66.667 12.53 0.00 0.00 4.42
972 2802 3.142838 GACCCAGGGCGTACGCTA 61.143 66.667 36.24 0.00 41.60 4.26
973 2803 3.135056 GACCCAGGGCGTACGCTAG 62.135 68.421 36.24 25.26 41.60 3.42
974 2804 4.587189 CCCAGGGCGTACGCTAGC 62.587 72.222 36.24 21.60 41.60 3.42
1009 2846 4.164664 CACGCGCGATGCCAATGT 62.165 61.111 39.36 7.53 42.08 2.71
1078 2921 1.203364 TCTTCCTCCTCCCTGCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
1089 2932 1.610673 TGCTTCTTCCTCCGCCTCT 60.611 57.895 0.00 0.00 0.00 3.69
1167 3010 4.785453 GAGCCGCTGTTCCCCCTG 62.785 72.222 0.00 0.00 0.00 4.45
1416 5037 4.116328 CGCGCGTTCCTCTCCTCA 62.116 66.667 24.19 0.00 0.00 3.86
1419 5040 1.513158 CGCGTTCCTCTCCTCACAT 59.487 57.895 0.00 0.00 0.00 3.21
1443 5064 2.055042 CCTCACCGTCCTCCTCCTG 61.055 68.421 0.00 0.00 0.00 3.86
1491 5112 2.107141 GCCGCGCTCATCTACCTT 59.893 61.111 5.56 0.00 0.00 3.50
1571 5192 4.468689 GCCTAAGCCTTCGCCGGT 62.469 66.667 1.90 0.00 34.57 5.28
1707 5328 2.505982 GCAAGGATGAGCCCGCTA 59.494 61.111 0.00 0.00 37.37 4.26
1739 5360 1.771255 CCTTGAGGACAGAATAGGGGG 59.229 57.143 0.00 0.00 37.39 5.40
1742 5363 0.470341 GAGGACAGAATAGGGGGCAC 59.530 60.000 0.00 0.00 0.00 5.01
2002 5623 0.612453 GGAGGAGAAGGACGTGGACT 60.612 60.000 0.00 0.00 0.00 3.85
2091 5712 3.883744 GACGGTGTGGGACCAGCTG 62.884 68.421 6.78 6.78 46.55 4.24
2174 5802 0.522180 GCATCATAGCTGCTGCCATC 59.478 55.000 13.43 0.00 38.32 3.51
2176 5804 2.505405 CATCATAGCTGCTGCCATCTT 58.495 47.619 13.43 0.00 40.80 2.40
2177 5805 3.671716 CATCATAGCTGCTGCCATCTTA 58.328 45.455 13.43 0.00 40.80 2.10
2178 5806 4.262617 CATCATAGCTGCTGCCATCTTAT 58.737 43.478 13.43 0.31 40.80 1.73
2266 5899 1.944024 ACGAGGAGATGATCGAGACAC 59.056 52.381 1.13 0.00 41.40 3.67
2283 5916 2.795470 GACACTGTTCGTCTCAAACTCC 59.205 50.000 0.00 0.00 0.00 3.85
2322 5955 2.514458 ACGGATTCAAGGAGGCAAAT 57.486 45.000 0.00 0.00 0.00 2.32
2367 6000 2.437343 GGTGCTCGACGCGAAGAAG 61.437 63.158 15.93 5.60 43.27 2.85
2433 6066 0.538287 AAGAAGTGTGCAAGGCCCTC 60.538 55.000 0.00 0.00 0.00 4.30
2461 6094 4.510571 TGGTGAGATGAGATGACACAATG 58.489 43.478 0.00 0.00 33.82 2.82
2487 6120 5.811613 CCACACACATTTCATTTTGTGAACT 59.188 36.000 9.80 0.00 46.14 3.01
2497 6130 5.904941 TCATTTTGTGAACTTGCATTCAGT 58.095 33.333 2.97 0.00 39.25 3.41
2546 6179 4.024725 CCATGAACATTTTGCTTGTGTTGG 60.025 41.667 0.00 0.00 36.30 3.77
2737 6370 1.782181 GTTCGCGTTCAAGAGAGCC 59.218 57.895 5.77 0.00 0.00 4.70
2835 6468 5.978814 ACTGATCATGTCCTAACTTGTACC 58.021 41.667 0.00 0.00 33.45 3.34
2836 6469 5.483937 ACTGATCATGTCCTAACTTGTACCA 59.516 40.000 0.00 0.00 33.45 3.25
2891 6525 3.244665 TGCCATGACAGTGTCTCTGAATT 60.245 43.478 23.29 0.00 46.27 2.17
2921 6555 4.390264 AGGACTCTTGTTTCTGTAAAGGC 58.610 43.478 0.00 0.00 0.00 4.35
2922 6556 4.134563 GGACTCTTGTTTCTGTAAAGGCA 58.865 43.478 0.00 0.00 0.00 4.75
3034 6693 3.081061 TGTTGGGCACAATCATGTACTC 58.919 45.455 3.81 0.00 37.82 2.59
3067 6729 8.306761 ACTTCAAATTATTGATTCAGGTGTTCC 58.693 33.333 0.00 0.00 44.70 3.62
3085 6747 3.931907 TCCTTGCAGCATATAGTGGTT 57.068 42.857 0.00 0.00 36.12 3.67
3127 6789 4.210331 GTCATCCATTACCATTTCAGGCT 58.790 43.478 0.00 0.00 0.00 4.58
3208 6870 3.518381 CGGTAACCGGATGAACACA 57.482 52.632 9.46 0.00 44.15 3.72
3360 7022 0.036164 AACATTGTAGCCACGAGCCA 59.964 50.000 0.00 0.00 45.47 4.75
3377 7039 1.269051 GCCAAACGAAAGACAAGGTGG 60.269 52.381 0.00 0.00 0.00 4.61
3418 7080 0.538287 AGTGCAAGAAGGTTGGCCTC 60.538 55.000 3.32 0.00 46.33 4.70
3505 7167 4.079850 CTGGCCAGCTGCGTCTCT 62.080 66.667 22.33 0.00 42.61 3.10
3649 7311 4.334118 ATCACAGCGGTGCAGGCA 62.334 61.111 15.82 0.00 44.87 4.75
3708 7370 1.594331 GAGTTCTTCCACGGCAACTT 58.406 50.000 0.00 0.00 0.00 2.66
3730 7392 3.330720 AAGGAGGAAGGCCACCCG 61.331 66.667 5.01 0.00 45.23 5.28
3790 7452 2.125512 GACCGCGTCTGCAAGGAT 60.126 61.111 4.92 0.00 42.97 3.24
3800 7462 1.676635 TGCAAGGATGTCAGCAGGC 60.677 57.895 0.00 0.00 32.48 4.85
3818 7480 1.445410 CTGAATGAACGGACGGCGA 60.445 57.895 16.62 0.00 0.00 5.54
3878 7540 1.226030 CGTTCCTCCACGGTTCAACC 61.226 60.000 0.00 0.00 36.47 3.77
3886 7548 2.594303 CGGTTCAACCCAGCAGCA 60.594 61.111 0.00 0.00 33.75 4.41
3929 7591 3.305773 GCTCGTCGTCATCGTCGC 61.306 66.667 0.00 0.00 44.86 5.19
3945 7607 1.064296 CGCAGTAGCCGTCAGTAGG 59.936 63.158 0.00 0.00 37.52 3.18
3946 7608 1.437986 GCAGTAGCCGTCAGTAGGG 59.562 63.158 0.00 0.00 33.58 3.53
3967 7629 3.493350 GGCATGATACCGAATGTCTCAGT 60.493 47.826 0.00 0.00 34.04 3.41
4059 7729 8.029522 TCACTAGTATTTGTAACTTGAGCAGAG 58.970 37.037 0.00 0.00 0.00 3.35
4072 7742 5.421693 ACTTGAGCAGAGAAGTGTAGATCAT 59.578 40.000 0.00 0.00 31.09 2.45
4074 7744 4.952335 TGAGCAGAGAAGTGTAGATCATCA 59.048 41.667 0.00 0.00 0.00 3.07
4076 7746 6.071165 TGAGCAGAGAAGTGTAGATCATCAAA 60.071 38.462 0.00 0.00 0.00 2.69
4077 7747 6.339730 AGCAGAGAAGTGTAGATCATCAAAG 58.660 40.000 0.00 0.00 0.00 2.77
4078 7748 6.070881 AGCAGAGAAGTGTAGATCATCAAAGT 60.071 38.462 0.00 0.00 0.00 2.66
4079 7749 6.255453 GCAGAGAAGTGTAGATCATCAAAGTC 59.745 42.308 0.00 0.00 0.00 3.01
4107 7783 4.024302 TCGTAGTAGTACATGATTCCGCAG 60.024 45.833 0.00 0.00 0.00 5.18
4170 7852 5.827797 AGGTGAAAGTGTCATTTGTACATGT 59.172 36.000 2.69 2.69 38.90 3.21
4200 7882 6.760298 TCAGACATGCTAAGAATCAATCACTC 59.240 38.462 0.00 0.00 0.00 3.51
4201 7883 6.537660 CAGACATGCTAAGAATCAATCACTCA 59.462 38.462 0.00 0.00 0.00 3.41
4202 7884 6.538021 AGACATGCTAAGAATCAATCACTCAC 59.462 38.462 0.00 0.00 0.00 3.51
4203 7885 6.413052 ACATGCTAAGAATCAATCACTCACT 58.587 36.000 0.00 0.00 0.00 3.41
4216 7898 6.316640 TCAATCACTCACTAGCAGTAGTAGAC 59.683 42.308 0.00 0.00 37.40 2.59
4221 7903 5.416326 ACTCACTAGCAGTAGTAGACCAAAG 59.584 44.000 0.00 0.00 37.40 2.77
4248 7930 2.476185 GGCGAATTGACCGTTCTGAATG 60.476 50.000 2.57 2.57 0.00 2.67
4278 7960 8.770828 TGATAAAAGTTCAGTCTAAAAGAACCG 58.229 33.333 0.00 0.00 41.86 4.44
4293 7975 2.744202 AGAACCGTCACATGATCAAAGC 59.256 45.455 0.00 0.00 0.00 3.51
4294 7976 1.078709 ACCGTCACATGATCAAAGCG 58.921 50.000 0.00 0.61 0.00 4.68
4297 7979 1.325640 CGTCACATGATCAAAGCGGAG 59.674 52.381 0.00 0.00 0.00 4.63
4358 8065 0.612732 TCTTTTGCTCCCCATGCTGG 60.613 55.000 0.00 0.00 37.25 4.85
4402 8109 0.473694 TCCCTCTGACCTGAAGGCAA 60.474 55.000 0.00 0.00 39.32 4.52
4405 8112 1.093159 CTCTGACCTGAAGGCAATGC 58.907 55.000 0.00 0.00 39.32 3.56
4531 8243 8.419442 CGAGGTTGGGGTTATTATATATCCTAC 58.581 40.741 0.00 0.00 0.00 3.18
4628 8344 3.349927 TGCTTATCTGCTGCTGATGTTT 58.650 40.909 26.15 8.56 0.00 2.83
4735 8451 3.623510 GGATCAATCGAACAAACCCTCTC 59.376 47.826 0.00 0.00 0.00 3.20
4797 8513 0.322322 AGGGAACAACGTTGCGGATA 59.678 50.000 27.61 0.00 0.00 2.59
4798 8514 0.445043 GGGAACAACGTTGCGGATAC 59.555 55.000 27.61 12.25 0.00 2.24
4815 8531 4.098654 CGGATACTCACTCCATTCTTCAGT 59.901 45.833 0.00 0.00 32.72 3.41
4863 8579 2.421424 GTGGAATGTGTTGGAGATCTGC 59.579 50.000 7.39 7.39 0.00 4.26
4890 8606 3.081061 GGACAACACCATCAGCAATGTA 58.919 45.455 0.00 0.00 33.13 2.29
4891 8607 3.119849 GGACAACACCATCAGCAATGTAC 60.120 47.826 0.00 0.00 33.13 2.90
4892 8608 3.485394 ACAACACCATCAGCAATGTACA 58.515 40.909 0.00 0.00 33.13 2.90
4893 8609 3.503363 ACAACACCATCAGCAATGTACAG 59.497 43.478 0.33 0.00 33.13 2.74
4894 8610 3.423539 ACACCATCAGCAATGTACAGT 57.576 42.857 0.33 0.00 33.13 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.373116 ATGTCGAGCGCGGGTTGT 62.373 61.111 10.69 0.00 38.28 3.32
11 12 3.853330 CATGTCGAGCGCGGGTTG 61.853 66.667 10.69 1.20 38.28 3.77
12 13 3.583276 TTCATGTCGAGCGCGGGTT 62.583 57.895 10.69 0.00 38.28 4.11
13 14 4.063967 TTCATGTCGAGCGCGGGT 62.064 61.111 10.69 0.00 38.28 5.28
14 15 3.554692 GTTCATGTCGAGCGCGGG 61.555 66.667 10.69 0.00 38.28 6.13
15 16 3.902063 CGTTCATGTCGAGCGCGG 61.902 66.667 10.69 0.00 41.56 6.46
19 20 3.554692 CGGGCGTTCATGTCGAGC 61.555 66.667 14.71 6.88 0.00 5.03
20 21 3.554692 GCGGGCGTTCATGTCGAG 61.555 66.667 14.71 7.72 0.00 4.04
21 22 4.063967 AGCGGGCGTTCATGTCGA 62.064 61.111 14.71 0.00 0.00 4.20
22 23 3.853330 CAGCGGGCGTTCATGTCG 61.853 66.667 8.24 8.24 0.00 4.35
23 24 3.499737 CCAGCGGGCGTTCATGTC 61.500 66.667 0.00 0.00 0.00 3.06
24 25 3.958147 CTCCAGCGGGCGTTCATGT 62.958 63.158 0.00 0.00 0.00 3.21
25 26 3.197790 CTCCAGCGGGCGTTCATG 61.198 66.667 0.00 0.00 0.00 3.07
32 33 4.783621 TGTCATGCTCCAGCGGGC 62.784 66.667 0.00 0.00 45.83 6.13
33 34 1.442526 GAATGTCATGCTCCAGCGGG 61.443 60.000 0.00 0.00 45.83 6.13
34 35 1.769098 CGAATGTCATGCTCCAGCGG 61.769 60.000 0.00 0.00 45.83 5.52
35 36 1.640069 CGAATGTCATGCTCCAGCG 59.360 57.895 0.00 0.00 45.83 5.18
36 37 1.354506 GCGAATGTCATGCTCCAGC 59.645 57.895 0.00 0.00 42.50 4.85
37 38 1.002792 CATGCGAATGTCATGCTCCAG 60.003 52.381 0.00 0.00 35.48 3.86
38 39 1.018910 CATGCGAATGTCATGCTCCA 58.981 50.000 0.00 0.00 35.48 3.86
39 40 0.309922 CCATGCGAATGTCATGCTCC 59.690 55.000 1.88 0.00 39.83 4.70
40 41 0.317603 GCCATGCGAATGTCATGCTC 60.318 55.000 1.88 0.00 39.83 4.26
41 42 1.033202 TGCCATGCGAATGTCATGCT 61.033 50.000 1.88 0.00 39.83 3.79
42 43 0.031585 ATGCCATGCGAATGTCATGC 59.968 50.000 0.00 0.00 39.83 4.06
43 44 1.601914 CCATGCCATGCGAATGTCATG 60.602 52.381 18.62 18.62 40.60 3.07
44 45 0.671796 CCATGCCATGCGAATGTCAT 59.328 50.000 1.88 0.00 0.00 3.06
45 46 2.007113 GCCATGCCATGCGAATGTCA 62.007 55.000 1.88 0.00 0.00 3.58
46 47 1.299620 GCCATGCCATGCGAATGTC 60.300 57.895 1.88 0.00 0.00 3.06
47 48 2.809706 GCCATGCCATGCGAATGT 59.190 55.556 1.88 0.00 0.00 2.71
64 65 4.457496 ATGAGCGTCGGCACAGGG 62.457 66.667 0.00 0.00 42.98 4.45
65 66 2.887568 GATGAGCGTCGGCACAGG 60.888 66.667 0.00 0.00 42.98 4.00
66 67 3.250323 CGATGAGCGTCGGCACAG 61.250 66.667 4.26 0.00 42.98 3.66
67 68 3.743636 TCGATGAGCGTCGGCACA 61.744 61.111 11.67 0.00 43.85 4.57
68 69 3.248171 GTCGATGAGCGTCGGCAC 61.248 66.667 11.39 0.71 45.03 5.01
70 71 4.194720 AGGTCGATGAGCGTCGGC 62.195 66.667 11.67 9.94 44.95 5.54
71 72 2.024871 GAGGTCGATGAGCGTCGG 59.975 66.667 11.67 0.00 41.74 4.79
72 73 1.583967 GTGAGGTCGATGAGCGTCG 60.584 63.158 5.78 5.78 42.74 5.12
73 74 1.226717 GGTGAGGTCGATGAGCGTC 60.227 63.158 0.00 0.00 41.80 5.19
74 75 2.885861 GGTGAGGTCGATGAGCGT 59.114 61.111 0.00 0.00 41.80 5.07
75 76 2.278206 CGGTGAGGTCGATGAGCG 60.278 66.667 0.00 0.00 42.69 5.03
76 77 1.226717 GTCGGTGAGGTCGATGAGC 60.227 63.158 0.00 0.00 38.93 4.26
77 78 1.433879 GGTCGGTGAGGTCGATGAG 59.566 63.158 0.00 0.00 38.93 2.90
78 79 2.050350 GGGTCGGTGAGGTCGATGA 61.050 63.158 0.00 0.00 38.93 2.92
79 80 2.052690 AGGGTCGGTGAGGTCGATG 61.053 63.158 0.00 0.00 38.93 3.84
80 81 2.052690 CAGGGTCGGTGAGGTCGAT 61.053 63.158 0.00 0.00 38.93 3.59
81 82 2.675423 CAGGGTCGGTGAGGTCGA 60.675 66.667 0.00 0.00 0.00 4.20
82 83 2.675423 TCAGGGTCGGTGAGGTCG 60.675 66.667 0.00 0.00 0.00 4.79
83 84 2.971452 GTCAGGGTCGGTGAGGTC 59.029 66.667 0.00 0.00 0.00 3.85
84 85 2.989824 CGTCAGGGTCGGTGAGGT 60.990 66.667 0.00 0.00 0.00 3.85
85 86 2.675423 TCGTCAGGGTCGGTGAGG 60.675 66.667 0.00 0.00 0.00 3.86
86 87 2.567049 GTCGTCAGGGTCGGTGAG 59.433 66.667 0.00 0.00 0.00 3.51
87 88 3.359523 CGTCGTCAGGGTCGGTGA 61.360 66.667 0.00 0.00 0.00 4.02
88 89 3.359523 TCGTCGTCAGGGTCGGTG 61.360 66.667 0.00 0.00 0.00 4.94
89 90 3.360340 GTCGTCGTCAGGGTCGGT 61.360 66.667 0.00 0.00 0.00 4.69
90 91 4.456253 CGTCGTCGTCAGGGTCGG 62.456 72.222 0.00 0.00 0.00 4.79
92 93 4.773117 GGCGTCGTCGTCAGGGTC 62.773 72.222 0.88 0.00 41.67 4.46
93 94 3.907260 TAGGCGTCGTCGTCAGGGT 62.907 63.158 9.66 0.00 44.74 4.34
94 95 3.109612 CTAGGCGTCGTCGTCAGGG 62.110 68.421 9.66 0.00 44.74 4.45
95 96 2.403987 CTAGGCGTCGTCGTCAGG 59.596 66.667 9.66 0.00 44.74 3.86
96 97 2.403987 CCTAGGCGTCGTCGTCAG 59.596 66.667 9.66 4.52 44.74 3.51
97 98 3.129502 CCCTAGGCGTCGTCGTCA 61.130 66.667 9.66 0.00 44.74 4.35
98 99 4.549516 GCCCTAGGCGTCGTCGTC 62.550 72.222 2.05 0.00 39.62 4.20
115 116 3.490759 CTACAAGGCGGCGTGCTG 61.491 66.667 23.96 13.22 45.43 4.41
118 119 1.878522 CTAGCTACAAGGCGGCGTG 60.879 63.158 22.58 22.58 37.29 5.34
119 120 2.494918 CTAGCTACAAGGCGGCGT 59.505 61.111 9.37 0.00 37.29 5.68
120 121 2.962253 GCTAGCTACAAGGCGGCG 60.962 66.667 7.70 0.51 37.29 6.46
121 122 1.592939 GAGCTAGCTACAAGGCGGC 60.593 63.158 19.38 0.00 37.29 6.53
122 123 0.390860 ATGAGCTAGCTACAAGGCGG 59.609 55.000 19.38 0.00 37.29 6.13
123 124 2.231215 AATGAGCTAGCTACAAGGCG 57.769 50.000 19.38 0.00 37.29 5.52
124 125 4.972514 AAAAATGAGCTAGCTACAAGGC 57.027 40.909 19.38 4.39 0.00 4.35
125 126 7.559590 ACATAAAAATGAGCTAGCTACAAGG 57.440 36.000 19.38 6.58 0.00 3.61
126 127 7.912250 CCAACATAAAAATGAGCTAGCTACAAG 59.088 37.037 19.38 3.69 0.00 3.16
127 128 7.609918 TCCAACATAAAAATGAGCTAGCTACAA 59.390 33.333 19.38 6.98 0.00 2.41
128 129 7.109501 TCCAACATAAAAATGAGCTAGCTACA 58.890 34.615 19.38 17.27 0.00 2.74
129 130 7.553881 TCCAACATAAAAATGAGCTAGCTAC 57.446 36.000 19.38 11.96 0.00 3.58
130 131 7.775093 ACATCCAACATAAAAATGAGCTAGCTA 59.225 33.333 19.38 6.79 0.00 3.32
131 132 6.604795 ACATCCAACATAAAAATGAGCTAGCT 59.395 34.615 19.45 19.45 0.00 3.32
132 133 6.694411 CACATCCAACATAAAAATGAGCTAGC 59.306 38.462 6.62 6.62 0.00 3.42
133 134 7.067372 TCCACATCCAACATAAAAATGAGCTAG 59.933 37.037 0.00 0.00 0.00 3.42
134 135 6.889177 TCCACATCCAACATAAAAATGAGCTA 59.111 34.615 0.00 0.00 0.00 3.32
135 136 5.716228 TCCACATCCAACATAAAAATGAGCT 59.284 36.000 0.00 0.00 0.00 4.09
136 137 5.807011 GTCCACATCCAACATAAAAATGAGC 59.193 40.000 0.00 0.00 0.00 4.26
137 138 6.029607 CGTCCACATCCAACATAAAAATGAG 58.970 40.000 0.00 0.00 0.00 2.90
138 139 5.621104 GCGTCCACATCCAACATAAAAATGA 60.621 40.000 0.00 0.00 0.00 2.57
139 140 4.562394 GCGTCCACATCCAACATAAAAATG 59.438 41.667 0.00 0.00 0.00 2.32
140 141 4.674101 CGCGTCCACATCCAACATAAAAAT 60.674 41.667 0.00 0.00 0.00 1.82
141 142 3.365465 CGCGTCCACATCCAACATAAAAA 60.365 43.478 0.00 0.00 0.00 1.94
142 143 2.160615 CGCGTCCACATCCAACATAAAA 59.839 45.455 0.00 0.00 0.00 1.52
143 144 1.735018 CGCGTCCACATCCAACATAAA 59.265 47.619 0.00 0.00 0.00 1.40
144 145 1.338294 ACGCGTCCACATCCAACATAA 60.338 47.619 5.58 0.00 0.00 1.90
145 146 0.248012 ACGCGTCCACATCCAACATA 59.752 50.000 5.58 0.00 0.00 2.29
146 147 1.003839 ACGCGTCCACATCCAACAT 60.004 52.632 5.58 0.00 0.00 2.71
147 148 1.958715 CACGCGTCCACATCCAACA 60.959 57.895 9.86 0.00 0.00 3.33
148 149 1.225376 TTCACGCGTCCACATCCAAC 61.225 55.000 9.86 0.00 0.00 3.77
149 150 1.069935 TTCACGCGTCCACATCCAA 59.930 52.632 9.86 0.00 0.00 3.53
150 151 1.666553 GTTCACGCGTCCACATCCA 60.667 57.895 9.86 0.00 0.00 3.41
151 152 0.108992 TAGTTCACGCGTCCACATCC 60.109 55.000 9.86 0.00 0.00 3.51
152 153 1.852895 GATAGTTCACGCGTCCACATC 59.147 52.381 9.86 10.62 0.00 3.06
153 154 1.797713 CGATAGTTCACGCGTCCACAT 60.798 52.381 9.86 5.46 0.00 3.21
154 155 0.455464 CGATAGTTCACGCGTCCACA 60.455 55.000 9.86 0.41 0.00 4.17
155 156 1.740043 GCGATAGTTCACGCGTCCAC 61.740 60.000 9.86 9.29 44.91 4.02
156 157 1.515519 GCGATAGTTCACGCGTCCA 60.516 57.895 9.86 0.00 44.91 4.02
157 158 3.296584 GCGATAGTTCACGCGTCC 58.703 61.111 9.86 0.00 44.91 4.79
162 163 0.460284 AAGGCTGGCGATAGTTCACG 60.460 55.000 0.00 0.00 39.35 4.35
163 164 1.291132 GAAGGCTGGCGATAGTTCAC 58.709 55.000 0.00 0.00 39.35 3.18
164 165 0.179111 CGAAGGCTGGCGATAGTTCA 60.179 55.000 4.21 0.00 39.35 3.18
165 166 0.179108 ACGAAGGCTGGCGATAGTTC 60.179 55.000 15.63 0.00 39.35 3.01
166 167 0.460284 CACGAAGGCTGGCGATAGTT 60.460 55.000 15.63 0.00 39.35 2.24
167 168 1.141881 CACGAAGGCTGGCGATAGT 59.858 57.895 15.63 0.00 39.35 2.12
168 169 1.592669 CCACGAAGGCTGGCGATAG 60.593 63.158 15.63 6.13 0.00 2.08
169 170 2.499205 CCACGAAGGCTGGCGATA 59.501 61.111 15.63 0.00 0.00 2.92
178 179 1.029947 ATAAAAGCCGGCCACGAAGG 61.030 55.000 26.15 0.00 44.60 3.46
179 180 0.098728 CATAAAAGCCGGCCACGAAG 59.901 55.000 26.15 5.89 44.60 3.79
180 181 0.606944 ACATAAAAGCCGGCCACGAA 60.607 50.000 26.15 5.57 44.60 3.85
181 182 0.606944 AACATAAAAGCCGGCCACGA 60.607 50.000 26.15 7.05 44.60 4.35
182 183 0.242555 AAACATAAAAGCCGGCCACG 59.757 50.000 26.15 8.66 40.55 4.94
183 184 1.271102 TCAAACATAAAAGCCGGCCAC 59.729 47.619 26.15 0.00 0.00 5.01
184 185 1.621992 TCAAACATAAAAGCCGGCCA 58.378 45.000 26.15 6.44 0.00 5.36
185 186 2.959507 ATCAAACATAAAAGCCGGCC 57.040 45.000 26.15 5.07 0.00 6.13
186 187 7.145323 ACATATAATCAAACATAAAAGCCGGC 58.855 34.615 21.89 21.89 0.00 6.13
187 188 9.528018 AAACATATAATCAAACATAAAAGCCGG 57.472 29.630 0.00 0.00 0.00 6.13
233 234 4.027295 CGACACATTTTAACAGCGCAAAAA 60.027 37.500 11.47 11.06 0.00 1.94
234 235 3.483922 CGACACATTTTAACAGCGCAAAA 59.516 39.130 11.47 8.10 0.00 2.44
235 236 3.039405 CGACACATTTTAACAGCGCAAA 58.961 40.909 11.47 0.18 0.00 3.68
236 237 2.603412 CCGACACATTTTAACAGCGCAA 60.603 45.455 11.47 0.00 0.00 4.85
237 238 1.069568 CCGACACATTTTAACAGCGCA 60.070 47.619 11.47 0.00 0.00 6.09
238 239 1.602191 CCGACACATTTTAACAGCGC 58.398 50.000 0.00 0.00 0.00 5.92
239 240 1.727857 GCCCGACACATTTTAACAGCG 60.728 52.381 0.00 0.00 0.00 5.18
240 241 1.402325 GGCCCGACACATTTTAACAGC 60.402 52.381 0.00 0.00 0.00 4.40
241 242 1.883275 TGGCCCGACACATTTTAACAG 59.117 47.619 0.00 0.00 0.00 3.16
242 243 1.883275 CTGGCCCGACACATTTTAACA 59.117 47.619 0.00 0.00 0.00 2.41
243 244 1.883926 ACTGGCCCGACACATTTTAAC 59.116 47.619 0.00 0.00 0.00 2.01
244 245 1.883275 CACTGGCCCGACACATTTTAA 59.117 47.619 0.00 0.00 0.00 1.52
245 246 1.202830 ACACTGGCCCGACACATTTTA 60.203 47.619 0.00 0.00 0.00 1.52
246 247 0.467290 ACACTGGCCCGACACATTTT 60.467 50.000 0.00 0.00 0.00 1.82
247 248 0.467290 AACACTGGCCCGACACATTT 60.467 50.000 0.00 0.00 0.00 2.32
248 249 1.150536 AACACTGGCCCGACACATT 59.849 52.632 0.00 0.00 0.00 2.71
249 250 1.600636 CAACACTGGCCCGACACAT 60.601 57.895 0.00 0.00 0.00 3.21
250 251 2.203139 CAACACTGGCCCGACACA 60.203 61.111 0.00 0.00 0.00 3.72
251 252 2.978010 CCAACACTGGCCCGACAC 60.978 66.667 0.00 0.00 35.39 3.67
252 253 4.263572 CCCAACACTGGCCCGACA 62.264 66.667 0.00 0.00 41.99 4.35
258 259 4.424566 CATGCGCCCAACACTGGC 62.425 66.667 4.18 0.00 45.70 4.85
259 260 2.985282 ACATGCGCCCAACACTGG 60.985 61.111 4.18 0.00 43.10 4.00
260 261 2.256158 CACATGCGCCCAACACTG 59.744 61.111 4.18 0.00 0.00 3.66
261 262 2.203337 ACACATGCGCCCAACACT 60.203 55.556 4.18 0.00 0.00 3.55
262 263 2.255252 GACACATGCGCCCAACAC 59.745 61.111 4.18 0.00 0.00 3.32
263 264 3.353029 CGACACATGCGCCCAACA 61.353 61.111 4.18 0.00 0.00 3.33
264 265 3.047280 TCGACACATGCGCCCAAC 61.047 61.111 4.18 0.00 0.00 3.77
265 266 3.047280 GTCGACACATGCGCCCAA 61.047 61.111 11.55 0.00 0.00 4.12
269 270 2.612567 TTTGGGTCGACACATGCGC 61.613 57.895 23.39 0.00 0.00 6.09
270 271 1.206578 GTTTGGGTCGACACATGCG 59.793 57.895 23.39 0.00 0.00 4.73
271 272 1.206578 CGTTTGGGTCGACACATGC 59.793 57.895 23.39 15.97 0.00 4.06
272 273 0.234625 CACGTTTGGGTCGACACATG 59.765 55.000 23.39 16.72 0.00 3.21
273 274 0.105224 TCACGTTTGGGTCGACACAT 59.895 50.000 23.39 2.99 0.00 3.21
274 275 0.108281 TTCACGTTTGGGTCGACACA 60.108 50.000 18.52 18.52 0.00 3.72
275 276 1.004292 CTTTCACGTTTGGGTCGACAC 60.004 52.381 18.91 15.66 0.00 3.67
276 277 1.292061 CTTTCACGTTTGGGTCGACA 58.708 50.000 18.91 0.00 0.00 4.35
277 278 0.041576 GCTTTCACGTTTGGGTCGAC 60.042 55.000 7.13 7.13 0.00 4.20
278 279 0.462225 TGCTTTCACGTTTGGGTCGA 60.462 50.000 0.00 0.00 0.00 4.20
279 280 0.041312 CTGCTTTCACGTTTGGGTCG 60.041 55.000 0.00 0.00 0.00 4.79
280 281 1.002792 GTCTGCTTTCACGTTTGGGTC 60.003 52.381 0.00 0.00 0.00 4.46
281 282 1.021968 GTCTGCTTTCACGTTTGGGT 58.978 50.000 0.00 0.00 0.00 4.51
282 283 0.041312 CGTCTGCTTTCACGTTTGGG 60.041 55.000 0.00 0.00 0.00 4.12
283 284 0.655733 ACGTCTGCTTTCACGTTTGG 59.344 50.000 0.00 0.00 46.93 3.28
288 289 1.526887 ACATCAACGTCTGCTTTCACG 59.473 47.619 0.00 0.00 41.90 4.35
289 290 2.096218 GGACATCAACGTCTGCTTTCAC 60.096 50.000 0.00 0.00 36.12 3.18
290 291 2.143122 GGACATCAACGTCTGCTTTCA 58.857 47.619 0.00 0.00 36.12 2.69
291 292 1.126846 CGGACATCAACGTCTGCTTTC 59.873 52.381 0.00 0.00 35.58 2.62
292 293 1.148310 CGGACATCAACGTCTGCTTT 58.852 50.000 0.00 0.00 35.58 3.51
293 294 2.827604 CGGACATCAACGTCTGCTT 58.172 52.632 0.00 0.00 35.58 3.91
294 295 4.578913 CGGACATCAACGTCTGCT 57.421 55.556 0.00 0.00 35.58 4.24
296 297 2.444624 CGGCGGACATCAACGTCTG 61.445 63.158 0.00 0.00 43.85 3.51
297 298 2.126071 CGGCGGACATCAACGTCT 60.126 61.111 0.00 0.00 36.12 4.18
298 299 3.186047 CCGGCGGACATCAACGTC 61.186 66.667 24.41 0.00 35.03 4.34
299 300 3.687102 TCCGGCGGACATCAACGT 61.687 61.111 27.46 0.00 0.00 3.99
314 315 4.513198 TTTGATTCGTTTGGATTGGTCC 57.487 40.909 0.00 0.00 45.31 4.46
315 316 5.108027 CGTTTTTGATTCGTTTGGATTGGTC 60.108 40.000 0.00 0.00 0.00 4.02
316 317 4.742659 CGTTTTTGATTCGTTTGGATTGGT 59.257 37.500 0.00 0.00 0.00 3.67
317 318 4.149747 CCGTTTTTGATTCGTTTGGATTGG 59.850 41.667 0.00 0.00 0.00 3.16
318 319 4.979197 TCCGTTTTTGATTCGTTTGGATTG 59.021 37.500 0.00 0.00 0.00 2.67
319 320 4.979815 GTCCGTTTTTGATTCGTTTGGATT 59.020 37.500 0.00 0.00 0.00 3.01
320 321 4.036971 TGTCCGTTTTTGATTCGTTTGGAT 59.963 37.500 0.00 0.00 0.00 3.41
321 322 3.377485 TGTCCGTTTTTGATTCGTTTGGA 59.623 39.130 0.00 0.00 0.00 3.53
322 323 3.696898 TGTCCGTTTTTGATTCGTTTGG 58.303 40.909 0.00 0.00 0.00 3.28
323 324 5.688348 TTTGTCCGTTTTTGATTCGTTTG 57.312 34.783 0.00 0.00 0.00 2.93
324 325 6.291374 CGAATTTGTCCGTTTTTGATTCGTTT 60.291 34.615 0.00 0.00 39.39 3.60
325 326 5.172411 CGAATTTGTCCGTTTTTGATTCGTT 59.828 36.000 0.00 0.00 39.39 3.85
326 327 4.673311 CGAATTTGTCCGTTTTTGATTCGT 59.327 37.500 0.00 0.00 39.39 3.85
327 328 4.673311 ACGAATTTGTCCGTTTTTGATTCG 59.327 37.500 12.33 12.33 45.63 3.34
328 329 7.790861 ATACGAATTTGTCCGTTTTTGATTC 57.209 32.000 0.28 0.00 39.86 2.52
329 330 8.582433 AAATACGAATTTGTCCGTTTTTGATT 57.418 26.923 0.28 0.00 38.07 2.57
343 344 5.099575 GCCGATCCAAACAAATACGAATTT 58.900 37.500 0.00 0.00 35.65 1.82
344 345 4.668289 GCCGATCCAAACAAATACGAATT 58.332 39.130 0.00 0.00 0.00 2.17
345 346 3.242608 CGCCGATCCAAACAAATACGAAT 60.243 43.478 0.00 0.00 0.00 3.34
346 347 2.094575 CGCCGATCCAAACAAATACGAA 59.905 45.455 0.00 0.00 0.00 3.85
347 348 1.661617 CGCCGATCCAAACAAATACGA 59.338 47.619 0.00 0.00 0.00 3.43
348 349 1.267832 CCGCCGATCCAAACAAATACG 60.268 52.381 0.00 0.00 0.00 3.06
349 350 1.064952 CCCGCCGATCCAAACAAATAC 59.935 52.381 0.00 0.00 0.00 1.89
350 351 1.340211 ACCCGCCGATCCAAACAAATA 60.340 47.619 0.00 0.00 0.00 1.40
351 352 0.610785 ACCCGCCGATCCAAACAAAT 60.611 50.000 0.00 0.00 0.00 2.32
352 353 0.824182 AACCCGCCGATCCAAACAAA 60.824 50.000 0.00 0.00 0.00 2.83
353 354 1.228306 AACCCGCCGATCCAAACAA 60.228 52.632 0.00 0.00 0.00 2.83
354 355 1.969064 CAACCCGCCGATCCAAACA 60.969 57.895 0.00 0.00 0.00 2.83
355 356 0.674269 TACAACCCGCCGATCCAAAC 60.674 55.000 0.00 0.00 0.00 2.93
356 357 0.391927 CTACAACCCGCCGATCCAAA 60.392 55.000 0.00 0.00 0.00 3.28
357 358 1.219664 CTACAACCCGCCGATCCAA 59.780 57.895 0.00 0.00 0.00 3.53
358 359 1.546589 AACTACAACCCGCCGATCCA 61.547 55.000 0.00 0.00 0.00 3.41
359 360 1.087771 CAACTACAACCCGCCGATCC 61.088 60.000 0.00 0.00 0.00 3.36
360 361 1.702491 GCAACTACAACCCGCCGATC 61.702 60.000 0.00 0.00 0.00 3.69
361 362 1.743995 GCAACTACAACCCGCCGAT 60.744 57.895 0.00 0.00 0.00 4.18
362 363 1.534336 TAGCAACTACAACCCGCCGA 61.534 55.000 0.00 0.00 0.00 5.54
363 364 0.461339 ATAGCAACTACAACCCGCCG 60.461 55.000 0.00 0.00 0.00 6.46
364 365 1.296727 GATAGCAACTACAACCCGCC 58.703 55.000 0.00 0.00 0.00 6.13
365 366 1.296727 GGATAGCAACTACAACCCGC 58.703 55.000 0.00 0.00 0.00 6.13
366 367 1.949465 GGGATAGCAACTACAACCCG 58.051 55.000 0.00 0.00 0.00 5.28
367 368 1.208776 ACGGGATAGCAACTACAACCC 59.791 52.381 0.00 0.00 0.00 4.11
368 369 2.277084 CACGGGATAGCAACTACAACC 58.723 52.381 0.00 0.00 0.00 3.77
369 370 2.277084 CCACGGGATAGCAACTACAAC 58.723 52.381 0.00 0.00 0.00 3.32
370 371 1.208535 CCCACGGGATAGCAACTACAA 59.791 52.381 0.00 0.00 37.50 2.41
371 372 0.828022 CCCACGGGATAGCAACTACA 59.172 55.000 0.00 0.00 37.50 2.74
372 373 3.680842 CCCACGGGATAGCAACTAC 57.319 57.895 0.00 0.00 37.50 2.73
383 384 2.275418 CTTCCCAATCCCCACGGG 59.725 66.667 0.00 0.00 46.11 5.28
384 385 2.275418 CCTTCCCAATCCCCACGG 59.725 66.667 0.00 0.00 0.00 4.94
385 386 2.440247 GCCTTCCCAATCCCCACG 60.440 66.667 0.00 0.00 0.00 4.94
386 387 1.380380 CAGCCTTCCCAATCCCCAC 60.380 63.158 0.00 0.00 0.00 4.61
387 388 3.099171 CAGCCTTCCCAATCCCCA 58.901 61.111 0.00 0.00 0.00 4.96
388 389 2.442830 GCAGCCTTCCCAATCCCC 60.443 66.667 0.00 0.00 0.00 4.81
389 390 1.075748 ATGCAGCCTTCCCAATCCC 60.076 57.895 0.00 0.00 0.00 3.85
390 391 0.396139 TCATGCAGCCTTCCCAATCC 60.396 55.000 0.00 0.00 0.00 3.01
391 392 0.743097 GTCATGCAGCCTTCCCAATC 59.257 55.000 0.00 0.00 0.00 2.67
392 393 0.333993 AGTCATGCAGCCTTCCCAAT 59.666 50.000 0.00 0.00 0.00 3.16
393 394 0.322816 GAGTCATGCAGCCTTCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
394 395 1.300963 GAGTCATGCAGCCTTCCCA 59.699 57.895 0.00 0.00 0.00 4.37
395 396 1.452833 GGAGTCATGCAGCCTTCCC 60.453 63.158 0.00 0.00 0.00 3.97
396 397 1.817099 CGGAGTCATGCAGCCTTCC 60.817 63.158 0.00 0.00 0.00 3.46
397 398 1.817099 CCGGAGTCATGCAGCCTTC 60.817 63.158 0.00 0.00 0.00 3.46
398 399 2.270205 CCGGAGTCATGCAGCCTT 59.730 61.111 0.00 0.00 0.00 4.35
399 400 4.479993 GCCGGAGTCATGCAGCCT 62.480 66.667 5.05 0.00 0.00 4.58
400 401 4.479993 AGCCGGAGTCATGCAGCC 62.480 66.667 5.05 0.00 0.00 4.85
401 402 2.578163 TACAGCCGGAGTCATGCAGC 62.578 60.000 5.05 0.00 0.00 5.25
402 403 0.529337 CTACAGCCGGAGTCATGCAG 60.529 60.000 5.05 0.00 0.00 4.41
403 404 0.970427 TCTACAGCCGGAGTCATGCA 60.970 55.000 5.05 0.00 0.00 3.96
404 405 0.390860 ATCTACAGCCGGAGTCATGC 59.609 55.000 5.05 0.00 0.00 4.06
405 406 1.871408 GCATCTACAGCCGGAGTCATG 60.871 57.143 5.05 9.92 0.00 3.07
406 407 0.390860 GCATCTACAGCCGGAGTCAT 59.609 55.000 5.05 0.00 0.00 3.06
407 408 0.684479 AGCATCTACAGCCGGAGTCA 60.684 55.000 5.05 0.00 0.00 3.41
408 409 0.031449 GAGCATCTACAGCCGGAGTC 59.969 60.000 5.05 0.00 0.00 3.36
409 410 2.119886 GAGCATCTACAGCCGGAGT 58.880 57.895 5.05 5.20 0.00 3.85
577 582 2.092882 GTCGCGTTGTACTGGCTCC 61.093 63.158 5.77 0.00 0.00 4.70
599 607 1.754234 GGTGATGGATGGGGTGCAC 60.754 63.158 8.80 8.80 0.00 4.57
616 639 2.693250 TTCGCTGTGACACACGGAGG 62.693 60.000 21.85 8.50 42.79 4.30
617 640 0.874175 TTTCGCTGTGACACACGGAG 60.874 55.000 21.85 10.75 42.79 4.63
685 708 4.927782 GTGGTGCACTGCCACGGA 62.928 66.667 17.98 0.00 45.57 4.69
793 2354 0.780637 AGAGGGGAGTGAGTCAGTGA 59.219 55.000 4.86 0.00 0.00 3.41
794 2355 1.638529 AAGAGGGGAGTGAGTCAGTG 58.361 55.000 4.86 0.00 0.00 3.66
896 2722 2.202878 CCTACCACGCCATCACCG 60.203 66.667 0.00 0.00 0.00 4.94
976 2806 1.199852 CGTGCAAACAAACGGCAGAC 61.200 55.000 0.00 0.00 38.38 3.51
977 2807 1.063327 CGTGCAAACAAACGGCAGA 59.937 52.632 0.00 0.00 38.38 4.26
978 2808 2.576002 GCGTGCAAACAAACGGCAG 61.576 57.895 0.00 0.00 40.12 4.85
979 2809 2.580867 GCGTGCAAACAAACGGCA 60.581 55.556 0.00 0.00 40.12 5.69
1054 2894 1.334384 GCAGGGAGGAGGAAGAGGAC 61.334 65.000 0.00 0.00 0.00 3.85
1078 2921 1.152652 GATGGAGAGAGGCGGAGGA 60.153 63.158 0.00 0.00 0.00 3.71
1416 5037 2.680352 ACGGTGAGGAGGCGATGT 60.680 61.111 0.00 0.00 0.00 3.06
1419 5040 4.361971 AGGACGGTGAGGAGGCGA 62.362 66.667 0.00 0.00 0.00 5.54
1483 5104 2.499827 GGCGGGCGAGAAGGTAGAT 61.500 63.158 0.00 0.00 0.00 1.98
1707 5328 0.554792 CCTCAAGGATGGGGCTTGAT 59.445 55.000 0.00 0.00 41.30 2.57
1788 5409 4.883354 GGCATTGGCGGAGGAGGG 62.883 72.222 0.00 0.00 42.47 4.30
1965 5586 3.444805 GACTGCGGCGACTCCTCT 61.445 66.667 12.98 0.00 0.00 3.69
2091 5712 1.884926 CCGGAATGAGCTCGCCTTC 60.885 63.158 9.64 11.47 0.00 3.46
2122 5743 0.617820 TGAAGTACTCCAGGAGGGGC 60.618 60.000 21.31 9.89 39.93 5.80
2125 5746 6.485830 TGATAAATGAAGTACTCCAGGAGG 57.514 41.667 21.31 2.94 33.35 4.30
2174 5802 9.065871 GTTTCAGAACGAAATGAATCCAATAAG 57.934 33.333 0.00 0.00 45.21 1.73
2176 5804 8.236586 CAGTTTCAGAACGAAATGAATCCAATA 58.763 33.333 0.00 0.00 45.21 1.90
2177 5805 7.040478 TCAGTTTCAGAACGAAATGAATCCAAT 60.040 33.333 0.00 0.00 45.21 3.16
2178 5806 6.262049 TCAGTTTCAGAACGAAATGAATCCAA 59.738 34.615 0.00 0.00 45.21 3.53
2266 5899 1.787155 CGTGGAGTTTGAGACGAACAG 59.213 52.381 0.00 0.00 33.64 3.16
2283 5916 1.153289 CTTGGGCATCCTCCTCGTG 60.153 63.158 0.00 0.00 0.00 4.35
2333 5966 0.954452 CACCTTGTTCTCCTGGTTGC 59.046 55.000 0.00 0.00 0.00 4.17
2433 6066 4.141779 TGTCATCTCATCTCACCATCAAGG 60.142 45.833 0.00 0.00 45.67 3.61
2461 6094 3.248125 CACAAAATGAAATGTGTGTGGGC 59.752 43.478 0.00 0.00 41.51 5.36
2497 6130 2.083774 GGTGATCGGACAAAGCATTCA 58.916 47.619 0.00 0.00 0.00 2.57
2546 6179 1.670967 GCCTGCACTTCCAAGAAATGC 60.671 52.381 3.95 3.95 36.81 3.56
2647 6280 2.038295 CTGAGCATCCTCCCTGTATTCC 59.962 54.545 0.00 0.00 37.29 3.01
2650 6283 2.324541 GACTGAGCATCCTCCCTGTAT 58.675 52.381 0.00 0.00 37.29 2.29
2725 6358 1.807573 CGCCTCGGCTCTCTTGAAC 60.808 63.158 6.35 0.00 39.32 3.18
2737 6370 3.099524 GATGTAGAGCATCGCCTCG 57.900 57.895 0.00 0.00 43.75 4.63
2835 6468 9.410556 CCCTTTTTGTCATCTAAACTGTTTATG 57.589 33.333 12.95 10.72 0.00 1.90
2836 6469 9.143155 ACCCTTTTTGTCATCTAAACTGTTTAT 57.857 29.630 12.95 0.00 0.00 1.40
2891 6525 6.650120 ACAGAAACAAGAGTCCTTTTACTCA 58.350 36.000 6.76 0.00 46.89 3.41
3067 6729 9.002600 TGATTATTAACCACTATATGCTGCAAG 57.997 33.333 6.36 1.79 0.00 4.01
3127 6789 1.005748 CCTGAGCTCTTCACACGCA 60.006 57.895 16.19 0.00 0.00 5.24
3360 7022 1.029681 GCCCACCTTGTCTTTCGTTT 58.970 50.000 0.00 0.00 0.00 3.60
3377 7039 2.270297 AAATCATCTGCAACGGCGCC 62.270 55.000 19.07 19.07 45.35 6.53
3418 7080 3.280920 GAGGCTAGCCACGATCTTG 57.719 57.895 34.70 0.00 38.92 3.02
3505 7167 1.317431 TTACGCCGGCTGAGAGCTTA 61.317 55.000 26.68 2.62 41.99 3.09
3673 7335 1.674651 CTCGGTCGTCTCCCTGACA 60.675 63.158 0.00 0.00 45.60 3.58
3730 7392 1.211457 ACCACCATGAAGATCCTCAGC 59.789 52.381 0.00 0.00 0.00 4.26
3800 7462 1.445410 TCGCCGTCCGTTCATTCAG 60.445 57.895 0.00 0.00 38.35 3.02
3818 7480 3.971702 GGTGCTGAAGCCCCCTGT 61.972 66.667 0.00 0.00 41.18 4.00
3878 7540 3.054503 GCTGGACTGTGCTGCTGG 61.055 66.667 20.67 0.00 30.50 4.85
3886 7548 2.601666 TCGGAGCTGCTGGACTGT 60.602 61.111 7.01 0.00 0.00 3.55
3929 7591 1.320344 TGCCCTACTGACGGCTACTG 61.320 60.000 0.00 0.00 45.90 2.74
3945 7607 3.062763 CTGAGACATTCGGTATCATGCC 58.937 50.000 0.00 0.00 45.92 4.40
3946 7608 3.722147 ACTGAGACATTCGGTATCATGC 58.278 45.455 0.00 0.00 45.92 4.06
3967 7629 6.830324 ACAATAGCTAAGATGCAGATTCCAAA 59.170 34.615 0.00 0.00 34.99 3.28
4078 7748 9.310716 CGGAATCATGTACTACTACGATATAGA 57.689 37.037 0.00 0.00 0.00 1.98
4079 7749 8.063038 GCGGAATCATGTACTACTACGATATAG 58.937 40.741 0.00 0.00 0.00 1.31
4107 7783 1.607628 CTGCTGGATGATGCTTTAGCC 59.392 52.381 0.00 0.00 41.18 3.93
4200 7882 4.158764 AGCTTTGGTCTACTACTGCTAGTG 59.841 45.833 0.00 0.00 34.79 2.74
4201 7883 4.345854 AGCTTTGGTCTACTACTGCTAGT 58.654 43.478 0.00 0.00 37.04 2.57
4202 7884 4.993029 AGCTTTGGTCTACTACTGCTAG 57.007 45.455 0.00 0.00 0.00 3.42
4203 7885 5.740290 AAAGCTTTGGTCTACTACTGCTA 57.260 39.130 11.80 0.00 0.00 3.49
4216 7898 2.476241 GTCAATTCGCCAAAAGCTTTGG 59.524 45.455 13.54 16.41 42.37 3.28
4221 7903 0.039527 ACGGTCAATTCGCCAAAAGC 60.040 50.000 0.00 0.00 38.52 3.51
4230 7912 5.122239 TCATGACATTCAGAACGGTCAATTC 59.878 40.000 18.55 0.00 42.83 2.17
4278 7960 1.667724 CCTCCGCTTTGATCATGTGAC 59.332 52.381 0.00 0.00 0.00 3.67
4293 7975 1.756950 TGGCTACTGGCTACCTCCG 60.757 63.158 0.00 0.00 41.46 4.63
4294 7976 1.823976 GTGGCTACTGGCTACCTCC 59.176 63.158 0.00 0.00 45.00 4.30
4358 8065 4.826183 AGAATGCAGGGATAATTCTCTTGC 59.174 41.667 11.27 11.27 36.18 4.01
4405 8112 4.713792 ACAAAGATAGAGGCCATTAGGG 57.286 45.455 5.01 0.00 40.85 3.53
4499 8211 0.115745 TAACCCCAACCTCGAGACCT 59.884 55.000 15.71 0.00 0.00 3.85
4628 8344 6.390504 AGTGGGAGATGTACCCTATGATTTA 58.609 40.000 0.00 0.00 46.82 1.40
4701 8417 0.179073 ATTGATCCTTCGGCGGAGTG 60.179 55.000 15.18 5.89 36.31 3.51
4735 8451 4.094294 CCGTATATTAAACCGCATGGATGG 59.906 45.833 0.00 0.00 39.21 3.51
4797 8513 2.611473 CGCACTGAAGAATGGAGTGAGT 60.611 50.000 0.00 0.00 39.64 3.41
4798 8514 1.998315 CGCACTGAAGAATGGAGTGAG 59.002 52.381 0.00 0.00 39.64 3.51
4890 8606 7.676683 ATACTTCCATTCACCATACTACTGT 57.323 36.000 0.00 0.00 0.00 3.55
4891 8607 8.204160 TGAATACTTCCATTCACCATACTACTG 58.796 37.037 0.00 0.00 39.43 2.74
4892 8608 8.319057 TGAATACTTCCATTCACCATACTACT 57.681 34.615 0.00 0.00 39.43 2.57
4893 8609 8.827677 GTTGAATACTTCCATTCACCATACTAC 58.172 37.037 0.00 0.00 42.99 2.73
4894 8610 8.768397 AGTTGAATACTTCCATTCACCATACTA 58.232 33.333 0.00 0.00 42.99 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.