Multiple sequence alignment - TraesCS5B01G303700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G303700 chr5B 100.000 4066 0 0 1 4066 488013426 488017491 0.000000e+00 7509.0
1 TraesCS5B01G303700 chr5B 91.162 1471 84 27 1737 3172 488111912 488113371 0.000000e+00 1954.0
2 TraesCS5B01G303700 chr5B 87.688 333 19 3 1132 1458 488111498 488111814 6.420000e-98 368.0
3 TraesCS5B01G303700 chr5A 93.428 1978 110 8 1360 3318 512458588 512460564 0.000000e+00 2915.0
4 TraesCS5B01G303700 chr5A 87.452 1554 106 34 1737 3248 512600354 512601860 0.000000e+00 1707.0
5 TraesCS5B01G303700 chr5A 92.094 468 32 4 3603 4065 512460554 512461021 0.000000e+00 654.0
6 TraesCS5B01G303700 chr5A 88.462 338 21 8 1132 1458 512599942 512600272 3.810000e-105 392.0
7 TraesCS5B01G303700 chr5A 93.061 245 14 1 945 1186 512458346 512458590 5.000000e-94 355.0
8 TraesCS5B01G303700 chr5A 83.186 113 15 4 3956 4066 349166577 349166467 2.590000e-17 100.0
9 TraesCS5B01G303700 chr5D 87.965 1803 125 34 1500 3265 407021430 407019683 0.000000e+00 2043.0
10 TraesCS5B01G303700 chr5D 89.847 847 73 5 2473 3318 407107031 407106197 0.000000e+00 1075.0
11 TraesCS5B01G303700 chr5D 90.525 591 38 13 930 1508 407108894 407108310 0.000000e+00 765.0
12 TraesCS5B01G303700 chr5D 90.851 470 26 4 3599 4066 407106211 407105757 7.470000e-172 614.0
13 TraesCS5B01G303700 chr5D 84.727 550 72 7 1503 2047 407108285 407107743 1.290000e-149 540.0
14 TraesCS5B01G303700 chr5D 87.173 382 29 3 1132 1508 407021817 407021451 2.260000e-112 416.0
15 TraesCS5B01G303700 chr5D 83.735 332 33 6 2152 2463 407107439 407107109 1.110000e-75 294.0
16 TraesCS5B01G303700 chr1B 96.107 899 30 2 1 898 390465554 390464660 0.000000e+00 1461.0
17 TraesCS5B01G303700 chr2A 95.764 897 33 2 1 896 688247108 688246216 0.000000e+00 1441.0
18 TraesCS5B01G303700 chr2A 95.206 897 37 3 1 896 522822519 522821628 0.000000e+00 1413.0
19 TraesCS5B01G303700 chr2A 80.902 665 100 16 2473 3130 30858348 30858992 2.180000e-137 499.0
20 TraesCS5B01G303700 chr2A 81.410 624 97 10 2463 3081 30765792 30766401 3.650000e-135 492.0
21 TraesCS5B01G303700 chr2A 89.407 236 25 0 1189 1424 30857279 30857514 8.540000e-77 298.0
22 TraesCS5B01G303700 chr2A 86.408 103 14 0 3954 4056 765054853 765054751 3.320000e-21 113.0
23 TraesCS5B01G303700 chr2A 83.186 113 15 4 3956 4066 136376830 136376720 2.590000e-17 100.0
24 TraesCS5B01G303700 chr3B 95.662 899 33 3 1 898 564035042 564034149 0.000000e+00 1439.0
25 TraesCS5B01G303700 chr3B 95.106 899 39 2 1 898 51239265 51238371 0.000000e+00 1411.0
26 TraesCS5B01G303700 chr3B 94.863 292 15 0 3313 3604 4310584 4310875 1.330000e-124 457.0
27 TraesCS5B01G303700 chr7A 95.333 900 37 2 1 899 710811931 710811036 0.000000e+00 1424.0
28 TraesCS5B01G303700 chr7A 95.486 288 13 0 3318 3605 11380856 11381143 1.030000e-125 460.0
29 TraesCS5B01G303700 chr3D 96.229 875 22 6 1 872 472398064 472397198 0.000000e+00 1423.0
30 TraesCS5B01G303700 chr4B 94.900 902 39 4 1 901 672949798 672948903 0.000000e+00 1404.0
31 TraesCS5B01G303700 chr3A 94.795 903 40 4 1 901 500896436 500895539 0.000000e+00 1400.0
32 TraesCS5B01G303700 chr2D 81.493 670 95 18 2473 3134 28896087 28896735 1.290000e-144 523.0
33 TraesCS5B01G303700 chr2D 81.672 622 95 14 2462 3076 28828675 28829284 2.180000e-137 499.0
34 TraesCS5B01G303700 chr2D 95.486 288 12 1 3317 3604 645314856 645315142 3.700000e-125 459.0
35 TraesCS5B01G303700 chr2D 90.254 236 23 0 1189 1424 28895017 28895252 3.950000e-80 309.0
36 TraesCS5B01G303700 chr2D 87.698 252 28 1 1173 1424 28827616 28827864 1.430000e-74 291.0
37 TraesCS5B01G303700 chr2D 97.222 36 1 0 3764 3799 441570415 441570450 1.220000e-05 62.1
38 TraesCS5B01G303700 chrUn 80.960 667 99 16 2473 3134 359864364 359865007 1.690000e-138 503.0
39 TraesCS5B01G303700 chrUn 82.011 378 55 12 1054 1424 17182959 17183330 3.950000e-80 309.0
40 TraesCS5B01G303700 chr2B 80.689 668 100 14 2473 3134 46672933 46673577 3.650000e-135 492.0
41 TraesCS5B01G303700 chr2B 95.189 291 14 0 3316 3606 685568976 685568686 1.030000e-125 460.0
42 TraesCS5B01G303700 chr2B 94.314 299 16 1 3311 3609 71992823 71993120 1.330000e-124 457.0
43 TraesCS5B01G303700 chr2B 78.783 608 107 15 2463 3066 46505456 46506045 4.930000e-104 388.0
44 TraesCS5B01G303700 chr2B 88.672 256 26 1 1169 1424 46669319 46669571 3.950000e-80 309.0
45 TraesCS5B01G303700 chr6D 94.649 299 16 0 3317 3615 36066995 36066697 7.960000e-127 464.0
46 TraesCS5B01G303700 chr6A 95.238 294 12 2 3314 3606 575465721 575466013 7.960000e-127 464.0
47 TraesCS5B01G303700 chr6A 84.071 113 14 4 3956 4066 153997949 153997839 5.560000e-19 106.0
48 TraesCS5B01G303700 chr4A 94.098 305 17 1 3307 3610 742276488 742276792 2.860000e-126 462.0
49 TraesCS5B01G303700 chr4A 78.286 175 27 7 3895 4066 63163770 63163604 7.190000e-18 102.0
50 TraesCS5B01G303700 chr7B 94.020 301 15 3 3310 3609 610373612 610373314 1.720000e-123 453.0
51 TraesCS5B01G303700 chr1A 78.286 175 27 8 3895 4066 243923296 243923130 7.190000e-18 102.0
52 TraesCS5B01G303700 chr1A 83.186 113 15 4 3956 4066 553642731 553642841 2.590000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G303700 chr5B 488013426 488017491 4065 False 7509.0 7509 100.0000 1 4066 1 chr5B.!!$F1 4065
1 TraesCS5B01G303700 chr5B 488111498 488113371 1873 False 1161.0 1954 89.4250 1132 3172 2 chr5B.!!$F2 2040
2 TraesCS5B01G303700 chr5A 512458346 512461021 2675 False 1308.0 2915 92.8610 945 4065 3 chr5A.!!$F1 3120
3 TraesCS5B01G303700 chr5A 512599942 512601860 1918 False 1049.5 1707 87.9570 1132 3248 2 chr5A.!!$F2 2116
4 TraesCS5B01G303700 chr5D 407019683 407021817 2134 True 1229.5 2043 87.5690 1132 3265 2 chr5D.!!$R1 2133
5 TraesCS5B01G303700 chr5D 407105757 407108894 3137 True 657.6 1075 87.9370 930 4066 5 chr5D.!!$R2 3136
6 TraesCS5B01G303700 chr1B 390464660 390465554 894 True 1461.0 1461 96.1070 1 898 1 chr1B.!!$R1 897
7 TraesCS5B01G303700 chr2A 688246216 688247108 892 True 1441.0 1441 95.7640 1 896 1 chr2A.!!$R3 895
8 TraesCS5B01G303700 chr2A 522821628 522822519 891 True 1413.0 1413 95.2060 1 896 1 chr2A.!!$R2 895
9 TraesCS5B01G303700 chr2A 30765792 30766401 609 False 492.0 492 81.4100 2463 3081 1 chr2A.!!$F1 618
10 TraesCS5B01G303700 chr2A 30857279 30858992 1713 False 398.5 499 85.1545 1189 3130 2 chr2A.!!$F2 1941
11 TraesCS5B01G303700 chr3B 564034149 564035042 893 True 1439.0 1439 95.6620 1 898 1 chr3B.!!$R2 897
12 TraesCS5B01G303700 chr3B 51238371 51239265 894 True 1411.0 1411 95.1060 1 898 1 chr3B.!!$R1 897
13 TraesCS5B01G303700 chr7A 710811036 710811931 895 True 1424.0 1424 95.3330 1 899 1 chr7A.!!$R1 898
14 TraesCS5B01G303700 chr3D 472397198 472398064 866 True 1423.0 1423 96.2290 1 872 1 chr3D.!!$R1 871
15 TraesCS5B01G303700 chr4B 672948903 672949798 895 True 1404.0 1404 94.9000 1 901 1 chr4B.!!$R1 900
16 TraesCS5B01G303700 chr3A 500895539 500896436 897 True 1400.0 1400 94.7950 1 901 1 chr3A.!!$R1 900
17 TraesCS5B01G303700 chr2D 28895017 28896735 1718 False 416.0 523 85.8735 1189 3134 2 chr2D.!!$F4 1945
18 TraesCS5B01G303700 chr2D 28827616 28829284 1668 False 395.0 499 84.6850 1173 3076 2 chr2D.!!$F3 1903
19 TraesCS5B01G303700 chrUn 359864364 359865007 643 False 503.0 503 80.9600 2473 3134 1 chrUn.!!$F2 661
20 TraesCS5B01G303700 chr2B 46669319 46673577 4258 False 400.5 492 84.6805 1169 3134 2 chr2B.!!$F3 1965
21 TraesCS5B01G303700 chr2B 46505456 46506045 589 False 388.0 388 78.7830 2463 3066 1 chr2B.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 918 0.108774 TAACCATCCAACCACGCACA 59.891 50.0 0.0 0.0 0.00 4.57 F
1183 1192 0.253044 TCCGAGGAAGGAAGCAATGG 59.747 55.0 0.0 0.0 37.36 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2627 5585 1.815003 CTGGCCCTGTTCATTCTTCAC 59.185 52.381 0.00 0.0 0.0 3.18 R
3139 6119 2.433662 ACCGGACTAAGTACCTCTCC 57.566 55.000 9.46 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.655425 TGAGTACTCAATGGGATACTATCTCG 59.345 42.308 23.24 0.00 36.35 4.04
446 449 1.982395 ACTCATGGTCGGCTTCGGA 60.982 57.895 0.00 0.00 34.13 4.55
472 475 1.550524 CTAGTAGAGCACCACTGGCAA 59.449 52.381 0.00 0.00 0.00 4.52
622 625 7.042797 TCGGTGGTGTAATAATAACTACTCC 57.957 40.000 0.00 0.00 33.95 3.85
628 631 9.621629 TGGTGTAATAATAACTACTCCAAATGG 57.378 33.333 0.00 0.00 38.24 3.16
717 720 6.381420 TGAAATGACAGTTTTAAAGGTTGGGA 59.619 34.615 0.00 0.00 0.00 4.37
847 850 3.944087 ACTGGCACTTCTCAATCCTTAC 58.056 45.455 0.00 0.00 0.00 2.34
881 884 2.885266 GGTTTGAGGGTTTGAGAGTTCC 59.115 50.000 0.00 0.00 0.00 3.62
882 885 2.543777 TTGAGGGTTTGAGAGTTCCG 57.456 50.000 0.00 0.00 0.00 4.30
900 903 2.100916 TCCGCTAGACATGCTCTTAACC 59.899 50.000 0.00 0.00 0.00 2.85
901 904 2.159099 CCGCTAGACATGCTCTTAACCA 60.159 50.000 0.00 0.00 0.00 3.67
902 905 3.493350 CCGCTAGACATGCTCTTAACCAT 60.493 47.826 0.00 0.00 0.00 3.55
903 906 3.738282 CGCTAGACATGCTCTTAACCATC 59.262 47.826 0.00 0.00 0.00 3.51
904 907 4.061596 GCTAGACATGCTCTTAACCATCC 58.938 47.826 0.00 0.00 0.00 3.51
905 908 4.443457 GCTAGACATGCTCTTAACCATCCA 60.443 45.833 0.00 0.00 0.00 3.41
906 909 4.574674 AGACATGCTCTTAACCATCCAA 57.425 40.909 0.00 0.00 0.00 3.53
907 910 4.265073 AGACATGCTCTTAACCATCCAAC 58.735 43.478 0.00 0.00 0.00 3.77
908 911 3.356290 ACATGCTCTTAACCATCCAACC 58.644 45.455 0.00 0.00 0.00 3.77
909 912 3.245229 ACATGCTCTTAACCATCCAACCA 60.245 43.478 0.00 0.00 0.00 3.67
910 913 2.790433 TGCTCTTAACCATCCAACCAC 58.210 47.619 0.00 0.00 0.00 4.16
911 914 1.737793 GCTCTTAACCATCCAACCACG 59.262 52.381 0.00 0.00 0.00 4.94
912 915 1.737793 CTCTTAACCATCCAACCACGC 59.262 52.381 0.00 0.00 0.00 5.34
913 916 1.072489 TCTTAACCATCCAACCACGCA 59.928 47.619 0.00 0.00 0.00 5.24
914 917 1.199097 CTTAACCATCCAACCACGCAC 59.801 52.381 0.00 0.00 0.00 5.34
915 918 0.108774 TAACCATCCAACCACGCACA 59.891 50.000 0.00 0.00 0.00 4.57
916 919 1.172180 AACCATCCAACCACGCACAG 61.172 55.000 0.00 0.00 0.00 3.66
917 920 2.334946 CCATCCAACCACGCACAGG 61.335 63.158 0.00 0.00 0.00 4.00
918 921 2.672996 ATCCAACCACGCACAGGC 60.673 61.111 0.00 0.00 0.00 4.85
919 922 3.196207 ATCCAACCACGCACAGGCT 62.196 57.895 0.00 0.00 38.10 4.58
920 923 3.663176 CCAACCACGCACAGGCTG 61.663 66.667 14.16 14.16 38.10 4.85
921 924 3.663176 CAACCACGCACAGGCTGG 61.663 66.667 20.34 9.00 41.33 4.85
922 925 4.189580 AACCACGCACAGGCTGGT 62.190 61.111 20.34 3.42 46.54 4.00
923 926 3.714487 AACCACGCACAGGCTGGTT 62.714 57.895 20.34 10.12 46.88 3.67
924 927 3.357079 CCACGCACAGGCTGGTTC 61.357 66.667 20.34 6.16 38.10 3.62
925 928 3.716006 CACGCACAGGCTGGTTCG 61.716 66.667 20.34 19.40 38.10 3.95
928 931 2.980233 GCACAGGCTGGTTCGCTT 60.980 61.111 20.34 0.00 36.96 4.68
938 941 2.479837 CTGGTTCGCTTGTCACACTTA 58.520 47.619 0.00 0.00 0.00 2.24
939 942 3.067106 CTGGTTCGCTTGTCACACTTAT 58.933 45.455 0.00 0.00 0.00 1.73
940 943 4.242475 CTGGTTCGCTTGTCACACTTATA 58.758 43.478 0.00 0.00 0.00 0.98
942 945 3.060363 GGTTCGCTTGTCACACTTATACG 59.940 47.826 0.00 0.00 0.00 3.06
1100 1106 1.908066 GATCCGCCACACACGAAACC 61.908 60.000 0.00 0.00 0.00 3.27
1107 1113 2.109387 CACACGAAACCCACCCGA 59.891 61.111 0.00 0.00 0.00 5.14
1182 1191 1.373570 GTCCGAGGAAGGAAGCAATG 58.626 55.000 0.00 0.00 42.77 2.82
1183 1192 0.253044 TCCGAGGAAGGAAGCAATGG 59.747 55.000 0.00 0.00 37.36 3.16
1184 1193 1.379642 CCGAGGAAGGAAGCAATGGC 61.380 60.000 0.00 0.00 41.61 4.40
1215 1227 1.675641 GGCGGAGGTGAGCAACAAT 60.676 57.895 0.00 0.00 34.54 2.71
1272 1284 1.513158 CGAGGACGACATGGAGCTT 59.487 57.895 0.00 0.00 42.66 3.74
1462 1483 1.341383 CCTAGCATCAAACTTGGCCCT 60.341 52.381 0.00 0.00 0.00 5.19
1493 1517 0.620556 CAGTCCCCTTGGCAGTACAT 59.379 55.000 0.00 0.00 0.00 2.29
1522 1577 2.737252 GTTGGTTCTCCGATTCAGTGTC 59.263 50.000 0.00 0.00 36.30 3.67
1547 1602 7.836685 TCAGTATATCAGAGAAACTCTTCCAGT 59.163 37.037 0.00 0.00 38.99 4.00
1704 1770 3.377172 CCTTTCTGTTTCACGGAACAAGT 59.623 43.478 0.00 0.00 42.67 3.16
1735 4134 5.726980 AAAAAGCTCTGCAATATGGTCAA 57.273 34.783 0.00 0.00 0.00 3.18
1753 4152 4.631813 GGTCAACAGTTCTGTACATGGATC 59.368 45.833 5.87 0.00 0.00 3.36
1953 4377 2.224281 ACTTTGATCACGAACCTGCAGA 60.224 45.455 17.39 0.00 0.00 4.26
2006 4430 3.626217 CGCTGTCATACTACACAGGAGTA 59.374 47.826 1.50 0.00 40.45 2.59
2017 4441 3.840991 ACACAGGAGTACTTGGTGAGTA 58.159 45.455 21.79 0.00 39.86 2.59
2018 4442 4.220724 ACACAGGAGTACTTGGTGAGTAA 58.779 43.478 21.79 0.00 42.31 2.24
2085 4519 8.298854 CAGTAATTCACTTTGATCATGAAACCA 58.701 33.333 12.86 0.00 36.03 3.67
2377 5237 4.137543 GGTTCTGATGAGAAGGTTTGTGT 58.862 43.478 0.00 0.00 38.95 3.72
2378 5238 4.023707 GGTTCTGATGAGAAGGTTTGTGTG 60.024 45.833 0.00 0.00 38.95 3.82
2410 5287 1.386533 CACATCCCCAGACAATGAGC 58.613 55.000 0.00 0.00 0.00 4.26
2602 5559 1.928567 CAGGCCCCTTCCCTACCAA 60.929 63.158 0.00 0.00 0.00 3.67
2627 5585 1.593196 TGCGTTCTTCCAACTTCCAG 58.407 50.000 0.00 0.00 0.00 3.86
2844 5806 1.891919 GGCGTGCACAACCTCTTCA 60.892 57.895 18.64 0.00 0.00 3.02
2997 5959 2.446512 GGGATCGAGAGCTTCCCAT 58.553 57.895 14.53 0.00 46.49 4.00
3183 6165 3.014623 CTGGATTCAGCATGCTTTGAGA 58.985 45.455 19.98 9.66 34.76 3.27
3192 6174 3.382546 AGCATGCTTTGAGACAGTGTTTT 59.617 39.130 16.30 0.00 0.00 2.43
3193 6175 3.732721 GCATGCTTTGAGACAGTGTTTTC 59.267 43.478 11.37 0.00 0.00 2.29
3310 6297 3.023949 GCTCATCCCGCACTCTGGT 62.024 63.158 0.00 0.00 0.00 4.00
3312 6299 1.607801 CTCATCCCGCACTCTGGTCA 61.608 60.000 0.00 0.00 0.00 4.02
3313 6300 1.448540 CATCCCGCACTCTGGTCAC 60.449 63.158 0.00 0.00 0.00 3.67
3314 6301 1.913262 ATCCCGCACTCTGGTCACA 60.913 57.895 0.00 0.00 0.00 3.58
3315 6302 1.892819 ATCCCGCACTCTGGTCACAG 61.893 60.000 0.00 0.00 46.30 3.66
3316 6303 2.740055 CCGCACTCTGGTCACAGC 60.740 66.667 0.00 0.00 44.54 4.40
3317 6304 2.740055 CGCACTCTGGTCACAGCC 60.740 66.667 0.00 0.00 44.54 4.85
3318 6305 2.427320 GCACTCTGGTCACAGCCA 59.573 61.111 0.00 0.00 44.54 4.75
3319 6306 1.002868 GCACTCTGGTCACAGCCAT 60.003 57.895 0.00 0.00 44.54 4.40
3320 6307 1.303799 GCACTCTGGTCACAGCCATG 61.304 60.000 0.00 0.00 44.54 3.66
3321 6308 0.675837 CACTCTGGTCACAGCCATGG 60.676 60.000 7.63 7.63 44.54 3.66
3322 6309 1.130054 ACTCTGGTCACAGCCATGGT 61.130 55.000 14.67 0.00 44.54 3.55
3323 6310 0.037303 CTCTGGTCACAGCCATGGTT 59.963 55.000 14.67 3.81 44.54 3.67
3324 6311 0.478072 TCTGGTCACAGCCATGGTTT 59.522 50.000 14.67 0.00 44.54 3.27
3325 6312 1.133513 TCTGGTCACAGCCATGGTTTT 60.134 47.619 14.67 0.00 44.54 2.43
3326 6313 1.270550 CTGGTCACAGCCATGGTTTTC 59.729 52.381 14.67 0.00 38.01 2.29
3327 6314 1.327303 GGTCACAGCCATGGTTTTCA 58.673 50.000 14.67 0.00 0.00 2.69
3328 6315 1.686052 GGTCACAGCCATGGTTTTCAA 59.314 47.619 14.67 0.00 0.00 2.69
3329 6316 2.299867 GGTCACAGCCATGGTTTTCAAT 59.700 45.455 14.67 0.00 0.00 2.57
3330 6317 3.244181 GGTCACAGCCATGGTTTTCAATT 60.244 43.478 14.67 0.00 0.00 2.32
3331 6318 4.379652 GTCACAGCCATGGTTTTCAATTT 58.620 39.130 14.67 0.00 0.00 1.82
3332 6319 4.448732 GTCACAGCCATGGTTTTCAATTTC 59.551 41.667 14.67 0.00 0.00 2.17
3333 6320 4.100653 TCACAGCCATGGTTTTCAATTTCA 59.899 37.500 14.67 0.00 0.00 2.69
3334 6321 4.449743 CACAGCCATGGTTTTCAATTTCAG 59.550 41.667 14.67 0.00 0.00 3.02
3335 6322 4.101430 ACAGCCATGGTTTTCAATTTCAGT 59.899 37.500 14.67 0.00 0.00 3.41
3336 6323 5.058490 CAGCCATGGTTTTCAATTTCAGTT 58.942 37.500 14.67 0.00 0.00 3.16
3337 6324 5.528320 CAGCCATGGTTTTCAATTTCAGTTT 59.472 36.000 14.67 0.00 0.00 2.66
3338 6325 5.759763 AGCCATGGTTTTCAATTTCAGTTTC 59.240 36.000 14.67 0.00 0.00 2.78
3339 6326 5.526846 GCCATGGTTTTCAATTTCAGTTTCA 59.473 36.000 14.67 0.00 0.00 2.69
3340 6327 6.293027 GCCATGGTTTTCAATTTCAGTTTCAG 60.293 38.462 14.67 0.00 0.00 3.02
3341 6328 6.985645 CCATGGTTTTCAATTTCAGTTTCAGA 59.014 34.615 2.57 0.00 0.00 3.27
3342 6329 7.495279 CCATGGTTTTCAATTTCAGTTTCAGAA 59.505 33.333 2.57 0.00 0.00 3.02
3343 6330 8.881743 CATGGTTTTCAATTTCAGTTTCAGAAA 58.118 29.630 0.00 0.00 39.11 2.52
3344 6331 8.839310 TGGTTTTCAATTTCAGTTTCAGAAAA 57.161 26.923 0.00 0.00 38.36 2.29
3345 6332 9.277783 TGGTTTTCAATTTCAGTTTCAGAAAAA 57.722 25.926 0.00 0.00 38.36 1.94
3352 6339 9.429600 CAATTTCAGTTTCAGAAAAATTTCAGC 57.570 29.630 8.47 0.00 38.36 4.26
3353 6340 8.721019 ATTTCAGTTTCAGAAAAATTTCAGCA 57.279 26.923 8.47 0.00 38.36 4.41
3354 6341 8.721019 TTTCAGTTTCAGAAAAATTTCAGCAT 57.279 26.923 8.47 0.00 39.61 3.79
3355 6342 7.935338 TCAGTTTCAGAAAAATTTCAGCATC 57.065 32.000 8.47 0.00 39.61 3.91
3356 6343 7.490840 TCAGTTTCAGAAAAATTTCAGCATCA 58.509 30.769 8.47 0.00 39.61 3.07
3357 6344 7.980662 TCAGTTTCAGAAAAATTTCAGCATCAA 59.019 29.630 8.47 0.00 39.61 2.57
3358 6345 8.060090 CAGTTTCAGAAAAATTTCAGCATCAAC 58.940 33.333 8.47 3.20 39.61 3.18
3359 6346 7.225341 AGTTTCAGAAAAATTTCAGCATCAACC 59.775 33.333 8.47 0.00 39.61 3.77
3360 6347 5.221880 TCAGAAAAATTTCAGCATCAACCG 58.778 37.500 8.47 0.00 39.61 4.44
3361 6348 5.009510 TCAGAAAAATTTCAGCATCAACCGA 59.990 36.000 8.47 0.00 39.61 4.69
3362 6349 5.691305 CAGAAAAATTTCAGCATCAACCGAA 59.309 36.000 8.47 0.00 39.61 4.30
3363 6350 6.200665 CAGAAAAATTTCAGCATCAACCGAAA 59.799 34.615 8.47 0.00 39.61 3.46
3364 6351 6.930722 AGAAAAATTTCAGCATCAACCGAAAT 59.069 30.769 8.47 0.00 39.20 2.17
3365 6352 6.710692 AAAATTTCAGCATCAACCGAAATC 57.289 33.333 0.00 0.00 37.15 2.17
3366 6353 5.389859 AATTTCAGCATCAACCGAAATCA 57.610 34.783 0.00 0.00 37.15 2.57
3367 6354 3.829886 TTCAGCATCAACCGAAATCAC 57.170 42.857 0.00 0.00 0.00 3.06
3368 6355 3.057969 TCAGCATCAACCGAAATCACT 57.942 42.857 0.00 0.00 0.00 3.41
3369 6356 2.743664 TCAGCATCAACCGAAATCACTG 59.256 45.455 0.00 0.00 0.00 3.66
3370 6357 2.743664 CAGCATCAACCGAAATCACTGA 59.256 45.455 0.00 0.00 0.00 3.41
3371 6358 3.189080 CAGCATCAACCGAAATCACTGAA 59.811 43.478 0.00 0.00 0.00 3.02
3372 6359 3.820467 AGCATCAACCGAAATCACTGAAA 59.180 39.130 0.00 0.00 0.00 2.69
3373 6360 4.460382 AGCATCAACCGAAATCACTGAAAT 59.540 37.500 0.00 0.00 0.00 2.17
3374 6361 5.047802 AGCATCAACCGAAATCACTGAAATT 60.048 36.000 0.00 0.00 0.00 1.82
3375 6362 5.287035 GCATCAACCGAAATCACTGAAATTC 59.713 40.000 0.00 0.00 0.00 2.17
3376 6363 6.380995 CATCAACCGAAATCACTGAAATTCA 58.619 36.000 0.00 0.00 0.00 2.57
3401 6388 7.428826 AGTGAATTTCAGTGATTTCAGTTTCC 58.571 34.615 15.60 7.22 0.00 3.13
3402 6389 7.068593 AGTGAATTTCAGTGATTTCAGTTTCCA 59.931 33.333 15.60 0.00 0.00 3.53
3403 6390 7.869429 GTGAATTTCAGTGATTTCAGTTTCCAT 59.131 33.333 15.60 0.00 0.00 3.41
3404 6391 8.423349 TGAATTTCAGTGATTTCAGTTTCCATT 58.577 29.630 12.59 0.00 0.00 3.16
3405 6392 9.264719 GAATTTCAGTGATTTCAGTTTCCATTT 57.735 29.630 10.09 0.00 0.00 2.32
3406 6393 8.822652 ATTTCAGTGATTTCAGTTTCCATTTC 57.177 30.769 0.00 0.00 0.00 2.17
3407 6394 6.957920 TCAGTGATTTCAGTTTCCATTTCA 57.042 33.333 0.00 0.00 0.00 2.69
3408 6395 6.973843 TCAGTGATTTCAGTTTCCATTTCAG 58.026 36.000 0.00 0.00 0.00 3.02
3409 6396 5.632347 CAGTGATTTCAGTTTCCATTTCAGC 59.368 40.000 0.00 0.00 0.00 4.26
3410 6397 4.925646 GTGATTTCAGTTTCCATTTCAGCC 59.074 41.667 0.00 0.00 0.00 4.85
3411 6398 4.588106 TGATTTCAGTTTCCATTTCAGCCA 59.412 37.500 0.00 0.00 0.00 4.75
3412 6399 5.070180 TGATTTCAGTTTCCATTTCAGCCAA 59.930 36.000 0.00 0.00 0.00 4.52
3413 6400 5.350504 TTTCAGTTTCCATTTCAGCCAAA 57.649 34.783 0.00 0.00 0.00 3.28
3414 6401 5.549742 TTCAGTTTCCATTTCAGCCAAAT 57.450 34.783 0.00 0.00 34.79 2.32
3423 6410 4.806640 ATTTCAGCCAAATGACCGAAAT 57.193 36.364 0.00 0.00 33.07 2.17
3424 6411 5.913137 ATTTCAGCCAAATGACCGAAATA 57.087 34.783 0.00 0.00 33.07 1.40
3425 6412 5.913137 TTTCAGCCAAATGACCGAAATAT 57.087 34.783 0.00 0.00 0.00 1.28
3426 6413 5.913137 TTCAGCCAAATGACCGAAATATT 57.087 34.783 0.00 0.00 0.00 1.28
3427 6414 5.499139 TCAGCCAAATGACCGAAATATTC 57.501 39.130 0.00 0.00 0.00 1.75
3428 6415 4.946772 TCAGCCAAATGACCGAAATATTCA 59.053 37.500 0.00 0.00 0.00 2.57
3429 6416 5.036737 CAGCCAAATGACCGAAATATTCAC 58.963 41.667 0.00 0.00 0.00 3.18
3430 6417 4.949856 AGCCAAATGACCGAAATATTCACT 59.050 37.500 0.00 0.00 0.00 3.41
3431 6418 5.418840 AGCCAAATGACCGAAATATTCACTT 59.581 36.000 0.00 0.00 0.00 3.16
3432 6419 5.516339 GCCAAATGACCGAAATATTCACTTG 59.484 40.000 0.00 0.00 0.00 3.16
3433 6420 6.624861 GCCAAATGACCGAAATATTCACTTGA 60.625 38.462 0.00 0.00 29.95 3.02
3434 6421 7.312154 CCAAATGACCGAAATATTCACTTGAA 58.688 34.615 0.00 0.00 38.56 2.69
3435 6422 7.975616 CCAAATGACCGAAATATTCACTTGAAT 59.024 33.333 9.37 9.37 45.77 2.57
3436 6423 9.357652 CAAATGACCGAAATATTCACTTGAATT 57.642 29.630 9.68 0.00 41.64 2.17
3437 6424 9.573133 AAATGACCGAAATATTCACTTGAATTC 57.427 29.630 9.68 0.00 41.64 2.17
3438 6425 7.680442 TGACCGAAATATTCACTTGAATTCA 57.320 32.000 9.68 3.38 41.64 2.57
3439 6426 8.105097 TGACCGAAATATTCACTTGAATTCAA 57.895 30.769 19.45 19.45 41.64 2.69
3440 6427 8.739039 TGACCGAAATATTCACTTGAATTCAAT 58.261 29.630 20.76 8.72 41.64 2.57
3441 6428 9.573133 GACCGAAATATTCACTTGAATTCAATT 57.427 29.630 20.76 13.01 41.64 2.32
3501 6488 9.524496 AATATTGGAATTATTCTGCTATGCTGA 57.476 29.630 4.87 0.00 34.87 4.26
3502 6489 7.828508 ATTGGAATTATTCTGCTATGCTGAA 57.171 32.000 12.72 12.72 46.84 3.02
3503 6490 7.643569 TTGGAATTATTCTGCTATGCTGAAA 57.356 32.000 13.96 2.12 46.18 2.69
3504 6491 7.828508 TGGAATTATTCTGCTATGCTGAAAT 57.171 32.000 13.96 4.04 46.18 2.17
3505 6492 8.241497 TGGAATTATTCTGCTATGCTGAAATT 57.759 30.769 13.96 10.70 46.18 1.82
3506 6493 8.139350 TGGAATTATTCTGCTATGCTGAAATTG 58.861 33.333 13.96 0.00 46.18 2.32
3507 6494 7.115947 GGAATTATTCTGCTATGCTGAAATTGC 59.884 37.037 13.96 11.67 46.18 3.56
3508 6495 6.704289 TTATTCTGCTATGCTGAAATTGCT 57.296 33.333 13.96 2.87 46.18 3.91
3509 6496 4.365899 TTCTGCTATGCTGAAATTGCTG 57.634 40.909 8.92 0.00 41.93 4.41
3510 6497 3.613030 TCTGCTATGCTGAAATTGCTGA 58.387 40.909 0.00 0.00 35.24 4.26
3511 6498 4.011698 TCTGCTATGCTGAAATTGCTGAA 58.988 39.130 0.00 0.00 34.91 3.02
3512 6499 4.460034 TCTGCTATGCTGAAATTGCTGAAA 59.540 37.500 0.00 0.00 34.91 2.69
3513 6500 5.126545 TCTGCTATGCTGAAATTGCTGAAAT 59.873 36.000 0.00 0.00 34.91 2.17
3514 6501 6.319405 TCTGCTATGCTGAAATTGCTGAAATA 59.681 34.615 0.00 0.00 34.91 1.40
3515 6502 7.013942 TCTGCTATGCTGAAATTGCTGAAATAT 59.986 33.333 0.00 0.00 34.91 1.28
3516 6503 7.494211 TGCTATGCTGAAATTGCTGAAATATT 58.506 30.769 0.00 0.00 30.80 1.28
3517 6504 7.982919 TGCTATGCTGAAATTGCTGAAATATTT 59.017 29.630 0.00 0.00 30.80 1.40
3518 6505 8.823818 GCTATGCTGAAATTGCTGAAATATTTT 58.176 29.630 1.43 0.00 0.00 1.82
3520 6507 7.367159 TGCTGAAATTGCTGAAATATTTTGG 57.633 32.000 1.43 0.09 0.00 3.28
3521 6508 6.128227 TGCTGAAATTGCTGAAATATTTTGGC 60.128 34.615 15.06 15.06 0.00 4.52
3522 6509 6.676213 GCTGAAATTGCTGAAATATTTTGGCC 60.676 38.462 17.58 0.00 0.00 5.36
3523 6510 5.350914 TGAAATTGCTGAAATATTTTGGCCG 59.649 36.000 17.58 0.24 0.00 6.13
3524 6511 4.734398 ATTGCTGAAATATTTTGGCCGA 57.266 36.364 17.58 0.00 0.00 5.54
3525 6512 4.527509 TTGCTGAAATATTTTGGCCGAA 57.472 36.364 17.58 0.00 0.00 4.30
3526 6513 4.527509 TGCTGAAATATTTTGGCCGAAA 57.472 36.364 20.60 20.60 0.00 3.46
3527 6514 4.241681 TGCTGAAATATTTTGGCCGAAAC 58.758 39.130 20.75 8.10 0.00 2.78
3528 6515 3.303229 GCTGAAATATTTTGGCCGAAACG 59.697 43.478 20.75 5.63 0.00 3.60
3529 6516 4.481463 CTGAAATATTTTGGCCGAAACGT 58.519 39.130 20.75 8.51 0.00 3.99
3530 6517 5.624344 TGAAATATTTTGGCCGAAACGTA 57.376 34.783 20.75 10.53 0.00 3.57
3531 6518 6.010294 TGAAATATTTTGGCCGAAACGTAA 57.990 33.333 20.75 7.15 0.00 3.18
3532 6519 6.622549 TGAAATATTTTGGCCGAAACGTAAT 58.377 32.000 20.75 7.01 0.00 1.89
3533 6520 7.759465 TGAAATATTTTGGCCGAAACGTAATA 58.241 30.769 20.75 9.08 0.00 0.98
3534 6521 8.407064 TGAAATATTTTGGCCGAAACGTAATAT 58.593 29.630 20.75 10.96 0.00 1.28
3535 6522 9.240159 GAAATATTTTGGCCGAAACGTAATATT 57.760 29.630 20.75 15.83 31.57 1.28
3536 6523 9.589111 AAATATTTTGGCCGAAACGTAATATTT 57.411 25.926 20.75 19.98 34.43 1.40
3537 6524 8.791355 ATATTTTGGCCGAAACGTAATATTTC 57.209 30.769 20.75 0.00 33.52 2.17
3538 6525 5.624344 TTTGGCCGAAACGTAATATTTCA 57.376 34.783 1.75 0.00 36.09 2.69
3539 6526 4.868450 TGGCCGAAACGTAATATTTCAG 57.132 40.909 0.00 0.00 36.09 3.02
3540 6527 4.255301 TGGCCGAAACGTAATATTTCAGT 58.745 39.130 0.00 0.00 36.09 3.41
3541 6528 4.093703 TGGCCGAAACGTAATATTTCAGTG 59.906 41.667 0.00 0.00 36.09 3.66
3542 6529 4.093850 GGCCGAAACGTAATATTTCAGTGT 59.906 41.667 0.00 0.00 36.09 3.55
3543 6530 5.391203 GGCCGAAACGTAATATTTCAGTGTT 60.391 40.000 0.00 0.00 36.09 3.32
3544 6531 6.081693 GCCGAAACGTAATATTTCAGTGTTT 58.918 36.000 0.00 0.00 36.09 2.83
3545 6532 6.032042 GCCGAAACGTAATATTTCAGTGTTTG 59.968 38.462 0.00 0.00 36.09 2.93
3546 6533 6.032042 CCGAAACGTAATATTTCAGTGTTTGC 59.968 38.462 0.00 0.00 36.09 3.68
3547 6534 6.795114 CGAAACGTAATATTTCAGTGTTTGCT 59.205 34.615 0.00 0.00 36.09 3.91
3548 6535 7.201149 CGAAACGTAATATTTCAGTGTTTGCTG 60.201 37.037 0.00 0.00 36.09 4.41
3549 6536 6.795098 ACGTAATATTTCAGTGTTTGCTGA 57.205 33.333 0.00 0.00 43.03 4.26
3557 6544 4.556942 TCAGTGTTTGCTGAAATGACTG 57.443 40.909 0.00 0.00 41.93 3.51
3558 6545 4.198530 TCAGTGTTTGCTGAAATGACTGA 58.801 39.130 0.00 0.00 41.93 3.41
3559 6546 4.639755 TCAGTGTTTGCTGAAATGACTGAA 59.360 37.500 7.28 0.00 41.93 3.02
3560 6547 5.125257 TCAGTGTTTGCTGAAATGACTGAAA 59.875 36.000 7.28 0.00 41.93 2.69
3561 6548 5.981315 CAGTGTTTGCTGAAATGACTGAAAT 59.019 36.000 0.00 0.00 36.96 2.17
3562 6549 6.477688 CAGTGTTTGCTGAAATGACTGAAATT 59.522 34.615 0.00 0.00 36.96 1.82
3563 6550 6.698766 AGTGTTTGCTGAAATGACTGAAATTC 59.301 34.615 0.00 0.00 0.00 2.17
3564 6551 6.476380 GTGTTTGCTGAAATGACTGAAATTCA 59.524 34.615 0.00 0.00 0.00 2.57
3582 6569 7.572502 AAATTCAGCGAATTTCACTGAAATC 57.427 32.000 25.46 9.56 45.22 2.17
3583 6570 5.947228 TTCAGCGAATTTCACTGAAATCT 57.053 34.783 21.61 7.66 41.08 2.40
3584 6571 5.536554 TCAGCGAATTTCACTGAAATCTC 57.463 39.130 15.84 13.68 40.77 2.75
3585 6572 4.996758 TCAGCGAATTTCACTGAAATCTCA 59.003 37.500 15.84 0.00 40.77 3.27
3586 6573 5.084722 CAGCGAATTTCACTGAAATCTCAC 58.915 41.667 15.84 10.30 40.77 3.51
3587 6574 4.999950 AGCGAATTTCACTGAAATCTCACT 59.000 37.500 15.84 11.86 40.77 3.41
3588 6575 5.084722 GCGAATTTCACTGAAATCTCACTG 58.915 41.667 15.84 5.70 40.77 3.66
3589 6576 5.106948 GCGAATTTCACTGAAATCTCACTGA 60.107 40.000 15.84 0.00 40.77 3.41
3590 6577 6.566564 GCGAATTTCACTGAAATCTCACTGAA 60.567 38.462 15.84 0.00 40.77 3.02
3591 6578 7.355017 CGAATTTCACTGAAATCTCACTGAAA 58.645 34.615 15.84 6.38 42.97 2.69
3592 6579 7.533222 CGAATTTCACTGAAATCTCACTGAAAG 59.467 37.037 15.84 1.65 42.52 2.62
3593 6580 7.814264 ATTTCACTGAAATCTCACTGAAAGT 57.186 32.000 10.71 0.00 42.81 2.66
3667 6654 3.978217 ACACACGCAAATTTTGGATTACG 59.022 39.130 10.96 7.69 0.00 3.18
3680 6667 5.957842 TTGGATTACGAAAAGAGCACAAT 57.042 34.783 0.00 0.00 0.00 2.71
3682 6669 5.938322 TGGATTACGAAAAGAGCACAATTC 58.062 37.500 0.00 0.00 0.00 2.17
3695 6682 2.229543 GCACAATTCCTTCATCTGCACA 59.770 45.455 0.00 0.00 0.00 4.57
3698 6685 2.426024 CAATTCCTTCATCTGCACAGGG 59.574 50.000 0.00 0.00 0.00 4.45
3737 6726 1.380302 GACCATGACTTGTGGGGCT 59.620 57.895 0.00 0.00 41.14 5.19
3763 6752 6.335777 GGTTAGCTACCGAAGAGAACATTTA 58.664 40.000 0.00 0.00 37.12 1.40
3778 6767 6.731467 AGAACATTTAGGCCCTCTTTGATTA 58.269 36.000 0.00 0.00 0.00 1.75
3800 6789 3.256631 AGCAGGAATTTCAAAACGCAGAT 59.743 39.130 0.00 0.00 0.00 2.90
3806 6795 4.691860 ATTTCAAAACGCAGATCAGGAG 57.308 40.909 0.00 0.00 0.00 3.69
3836 6825 1.077501 CGGGATGACATGCCCACTT 60.078 57.895 19.30 0.00 44.94 3.16
3837 6826 1.097547 CGGGATGACATGCCCACTTC 61.098 60.000 19.30 0.00 44.94 3.01
3860 6849 9.342308 CTTCATTTCTATAGGATTAGCAAACCA 57.658 33.333 0.00 0.00 0.00 3.67
3940 6930 5.513233 ACATTGGAGTGGATGCTAGATTTT 58.487 37.500 0.00 0.00 0.00 1.82
3945 6936 6.899089 TGGAGTGGATGCTAGATTTTTATGA 58.101 36.000 0.00 0.00 0.00 2.15
3985 6976 6.779539 ACAAACAATTCCAGAGGAAAGAATCT 59.220 34.615 2.16 0.00 45.41 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.888619 TCGGGATAGATGCCATCGAC 59.111 55.000 0.00 0.00 38.32 4.20
263 266 7.535258 GTGTAGAATCACACAACATTTCATGAC 59.465 37.037 0.00 0.00 46.55 3.06
442 445 3.821600 GGTGCTCTACTAGATCATTCCGA 59.178 47.826 0.00 0.00 0.00 4.55
446 449 4.343526 CCAGTGGTGCTCTACTAGATCATT 59.656 45.833 4.36 0.00 33.69 2.57
472 475 4.900704 ATGCGCCGCCCATCCAAT 62.901 61.111 6.63 0.00 0.00 3.16
619 622 9.703892 TTGACATAAAACAATAACCATTTGGAG 57.296 29.630 3.01 0.00 38.94 3.86
717 720 3.589288 AGGGTTCTAGTCTTTGCCTCAAT 59.411 43.478 0.00 0.00 0.00 2.57
847 850 4.893524 ACCCTCAAACCCTTAAAGAAGTTG 59.106 41.667 0.00 0.00 0.00 3.16
881 884 3.165058 TGGTTAAGAGCATGTCTAGCG 57.835 47.619 0.00 0.00 32.65 4.26
882 885 4.061596 GGATGGTTAAGAGCATGTCTAGC 58.938 47.826 0.00 0.00 43.64 3.42
900 903 2.981560 GCCTGTGCGTGGTTGGATG 61.982 63.158 0.00 0.00 0.00 3.51
901 904 2.672996 GCCTGTGCGTGGTTGGAT 60.673 61.111 0.00 0.00 0.00 3.41
902 905 3.872603 AGCCTGTGCGTGGTTGGA 61.873 61.111 0.00 0.00 44.33 3.53
903 906 3.663176 CAGCCTGTGCGTGGTTGG 61.663 66.667 0.00 0.00 44.33 3.77
904 907 3.663176 CCAGCCTGTGCGTGGTTG 61.663 66.667 0.00 0.00 44.33 3.77
905 908 3.714487 AACCAGCCTGTGCGTGGTT 62.714 57.895 12.51 12.51 45.71 3.67
906 909 4.189580 AACCAGCCTGTGCGTGGT 62.190 61.111 0.00 0.00 45.16 4.16
907 910 3.357079 GAACCAGCCTGTGCGTGG 61.357 66.667 0.00 0.00 44.33 4.94
908 911 3.716006 CGAACCAGCCTGTGCGTG 61.716 66.667 0.00 0.00 44.33 5.34
911 914 2.980233 AAGCGAACCAGCCTGTGC 60.980 61.111 0.00 0.00 38.01 4.57
912 915 1.845809 GACAAGCGAACCAGCCTGTG 61.846 60.000 0.00 0.00 41.36 3.66
913 916 1.598130 GACAAGCGAACCAGCCTGT 60.598 57.895 0.00 0.00 43.67 4.00
914 917 1.597854 TGACAAGCGAACCAGCCTG 60.598 57.895 0.00 0.00 38.01 4.85
915 918 1.598130 GTGACAAGCGAACCAGCCT 60.598 57.895 0.00 0.00 38.01 4.58
916 919 1.891919 TGTGACAAGCGAACCAGCC 60.892 57.895 0.00 0.00 38.01 4.85
917 920 1.160329 AGTGTGACAAGCGAACCAGC 61.160 55.000 0.00 0.00 37.41 4.85
918 921 1.299541 AAGTGTGACAAGCGAACCAG 58.700 50.000 0.00 0.00 0.00 4.00
919 922 2.605837 TAAGTGTGACAAGCGAACCA 57.394 45.000 0.00 0.00 0.00 3.67
920 923 3.060363 CGTATAAGTGTGACAAGCGAACC 59.940 47.826 0.00 0.00 0.00 3.62
921 924 3.671928 ACGTATAAGTGTGACAAGCGAAC 59.328 43.478 0.00 0.00 0.00 3.95
922 925 3.904571 ACGTATAAGTGTGACAAGCGAA 58.095 40.909 0.00 0.00 0.00 4.70
923 926 3.564235 ACGTATAAGTGTGACAAGCGA 57.436 42.857 0.00 0.00 0.00 4.93
924 927 3.427528 ACAACGTATAAGTGTGACAAGCG 59.572 43.478 0.00 0.00 0.00 4.68
925 928 4.143179 GGACAACGTATAAGTGTGACAAGC 60.143 45.833 0.00 0.00 0.00 4.01
926 929 4.986034 TGGACAACGTATAAGTGTGACAAG 59.014 41.667 0.00 0.00 0.00 3.16
927 930 4.946445 TGGACAACGTATAAGTGTGACAA 58.054 39.130 0.00 0.00 0.00 3.18
928 931 4.587584 TGGACAACGTATAAGTGTGACA 57.412 40.909 0.00 0.00 0.00 3.58
1215 1227 1.686325 GGCGCTTCAGGATCACCCTA 61.686 60.000 7.64 0.00 45.60 3.53
1462 1483 1.697432 AGGGGACTGAATTTCGACACA 59.303 47.619 0.00 0.00 41.13 3.72
1493 1517 5.655090 TGAATCGGAGAACCAACTGTAGATA 59.345 40.000 0.00 0.00 43.58 1.98
1522 1577 8.006298 ACTGGAAGAGTTTCTCTGATATACTG 57.994 38.462 0.00 0.00 40.28 2.74
1679 1745 4.710324 TGTTCCGTGAAACAGAAAGGTAT 58.290 39.130 0.00 0.00 34.58 2.73
1713 1779 5.010922 TGTTGACCATATTGCAGAGCTTTTT 59.989 36.000 0.00 0.00 0.00 1.94
1735 4134 3.369892 GCTGGATCCATGTACAGAACTGT 60.370 47.826 16.63 12.10 46.87 3.55
1781 4199 2.957402 TGTCAAGCTTTCTGGTGGAT 57.043 45.000 0.00 0.00 0.00 3.41
1782 4200 2.727123 TTGTCAAGCTTTCTGGTGGA 57.273 45.000 0.00 0.00 0.00 4.02
1904 4328 1.991813 TCACATCCTGTCATTCCCCAA 59.008 47.619 0.00 0.00 0.00 4.12
1953 4377 5.184479 CAGGATGGTTGATCTTGAAATGTGT 59.816 40.000 0.00 0.00 39.95 3.72
2006 4430 7.496591 TGACGAATAAAAGTTTACTCACCAAGT 59.503 33.333 0.00 0.00 42.33 3.16
2017 4441 8.460428 TGGTTAACTTGTGACGAATAAAAGTTT 58.540 29.630 5.42 0.00 40.52 2.66
2018 4442 7.987649 TGGTTAACTTGTGACGAATAAAAGTT 58.012 30.769 5.42 10.02 42.21 2.66
2213 5073 4.778213 AAATCCAGCATAGGCAGTAAGA 57.222 40.909 0.67 0.00 44.61 2.10
2294 5154 4.680237 CCGACAAGCTGCCCGACA 62.680 66.667 0.00 0.00 0.00 4.35
2324 5184 1.842562 ACCACATAGCAGCCAGAGATT 59.157 47.619 0.00 0.00 0.00 2.40
2377 5237 2.722094 GGATGTGCCCAAATGAGTACA 58.278 47.619 0.00 0.00 0.00 2.90
2429 5306 7.331687 GCTTTGCCAACAGTATGACAAAATTAT 59.668 33.333 0.00 0.00 39.69 1.28
2602 5559 2.919228 AGTTGGAAGAACGCAAGAGTT 58.081 42.857 0.00 0.00 43.62 3.01
2627 5585 1.815003 CTGGCCCTGTTCATTCTTCAC 59.185 52.381 0.00 0.00 0.00 3.18
2997 5959 4.212913 GAGCCCGATGAGCGCAGA 62.213 66.667 11.47 0.00 39.11 4.26
3139 6119 2.433662 ACCGGACTAAGTACCTCTCC 57.566 55.000 9.46 0.00 0.00 3.71
3183 6165 5.253330 TCTCCAACTTTCTGAAAACACTGT 58.747 37.500 4.18 0.00 0.00 3.55
3192 6174 6.263168 GGATTCTGTTTTCTCCAACTTTCTGA 59.737 38.462 0.00 0.00 0.00 3.27
3193 6175 6.264067 AGGATTCTGTTTTCTCCAACTTTCTG 59.736 38.462 0.00 0.00 0.00 3.02
3268 6254 6.259829 GCAGCATCAACTTCCCTTTTTAAAAA 59.740 34.615 12.62 12.62 0.00 1.94
3300 6287 2.740055 GGCTGTGACCAGAGTGCG 60.740 66.667 0.00 0.00 41.50 5.34
3310 6297 4.100653 TGAAATTGAAAACCATGGCTGTGA 59.899 37.500 13.04 0.00 0.00 3.58
3312 6299 4.101430 ACTGAAATTGAAAACCATGGCTGT 59.899 37.500 13.04 0.00 0.00 4.40
3313 6300 4.634199 ACTGAAATTGAAAACCATGGCTG 58.366 39.130 13.04 0.00 0.00 4.85
3314 6301 4.961438 ACTGAAATTGAAAACCATGGCT 57.039 36.364 13.04 0.00 0.00 4.75
3315 6302 5.526846 TGAAACTGAAATTGAAAACCATGGC 59.473 36.000 13.04 0.00 0.00 4.40
3316 6303 6.985645 TCTGAAACTGAAATTGAAAACCATGG 59.014 34.615 11.19 11.19 0.00 3.66
3317 6304 8.422973 TTCTGAAACTGAAATTGAAAACCATG 57.577 30.769 0.00 0.00 0.00 3.66
3318 6305 9.447157 TTTTCTGAAACTGAAATTGAAAACCAT 57.553 25.926 1.58 0.00 32.91 3.55
3319 6306 8.839310 TTTTCTGAAACTGAAATTGAAAACCA 57.161 26.923 1.58 0.00 32.91 3.67
3326 6313 9.429600 GCTGAAATTTTTCTGAAACTGAAATTG 57.570 29.630 12.42 0.00 38.07 2.32
3327 6314 9.165035 TGCTGAAATTTTTCTGAAACTGAAATT 57.835 25.926 12.42 3.83 38.07 1.82
3328 6315 8.721019 TGCTGAAATTTTTCTGAAACTGAAAT 57.279 26.923 12.42 0.00 38.07 2.17
3329 6316 8.721019 ATGCTGAAATTTTTCTGAAACTGAAA 57.279 26.923 12.42 0.00 38.07 2.69
3330 6317 7.980662 TGATGCTGAAATTTTTCTGAAACTGAA 59.019 29.630 12.42 0.00 38.07 3.02
3331 6318 7.490840 TGATGCTGAAATTTTTCTGAAACTGA 58.509 30.769 12.42 0.00 38.07 3.41
3332 6319 7.703298 TGATGCTGAAATTTTTCTGAAACTG 57.297 32.000 12.42 0.00 38.07 3.16
3333 6320 7.225341 GGTTGATGCTGAAATTTTTCTGAAACT 59.775 33.333 12.42 0.00 38.07 2.66
3334 6321 7.347448 GGTTGATGCTGAAATTTTTCTGAAAC 58.653 34.615 12.42 9.92 38.07 2.78
3335 6322 6.200665 CGGTTGATGCTGAAATTTTTCTGAAA 59.799 34.615 12.42 0.00 38.07 2.69
3336 6323 5.691305 CGGTTGATGCTGAAATTTTTCTGAA 59.309 36.000 12.42 4.08 38.07 3.02
3337 6324 5.009510 TCGGTTGATGCTGAAATTTTTCTGA 59.990 36.000 12.42 1.29 38.07 3.27
3338 6325 5.221880 TCGGTTGATGCTGAAATTTTTCTG 58.778 37.500 4.80 5.32 38.02 3.02
3339 6326 5.452078 TCGGTTGATGCTGAAATTTTTCT 57.548 34.783 4.80 0.00 38.02 2.52
3340 6327 6.523676 TTTCGGTTGATGCTGAAATTTTTC 57.476 33.333 0.00 0.00 38.41 2.29
3346 6333 3.820467 AGTGATTTCGGTTGATGCTGAAA 59.180 39.130 3.06 3.06 44.68 2.69
3347 6334 3.189080 CAGTGATTTCGGTTGATGCTGAA 59.811 43.478 0.00 0.00 32.46 3.02
3348 6335 2.743664 CAGTGATTTCGGTTGATGCTGA 59.256 45.455 0.00 0.00 0.00 4.26
3349 6336 2.743664 TCAGTGATTTCGGTTGATGCTG 59.256 45.455 0.00 0.00 0.00 4.41
3350 6337 3.057969 TCAGTGATTTCGGTTGATGCT 57.942 42.857 0.00 0.00 0.00 3.79
3351 6338 3.829886 TTCAGTGATTTCGGTTGATGC 57.170 42.857 0.00 0.00 0.00 3.91
3352 6339 6.380995 TGAATTTCAGTGATTTCGGTTGATG 58.619 36.000 0.00 0.00 0.00 3.07
3353 6340 6.573664 TGAATTTCAGTGATTTCGGTTGAT 57.426 33.333 0.00 0.00 0.00 2.57
3354 6341 6.000891 CTGAATTTCAGTGATTTCGGTTGA 57.999 37.500 16.71 0.00 39.58 3.18
3371 6358 8.636213 ACTGAAATCACTGAAATTCACTGAATT 58.364 29.630 10.71 10.71 43.07 2.17
3372 6359 8.174733 ACTGAAATCACTGAAATTCACTGAAT 57.825 30.769 8.87 0.00 33.25 2.57
3373 6360 7.572523 ACTGAAATCACTGAAATTCACTGAA 57.427 32.000 8.87 0.00 0.00 3.02
3374 6361 7.572523 AACTGAAATCACTGAAATTCACTGA 57.427 32.000 7.57 7.57 0.00 3.41
3375 6362 7.380602 GGAAACTGAAATCACTGAAATTCACTG 59.619 37.037 0.00 0.00 0.00 3.66
3376 6363 7.068593 TGGAAACTGAAATCACTGAAATTCACT 59.931 33.333 0.00 0.00 0.00 3.41
3377 6364 7.202526 TGGAAACTGAAATCACTGAAATTCAC 58.797 34.615 0.00 0.13 0.00 3.18
3378 6365 7.345422 TGGAAACTGAAATCACTGAAATTCA 57.655 32.000 0.00 0.00 0.00 2.57
3379 6366 8.822652 AATGGAAACTGAAATCACTGAAATTC 57.177 30.769 0.00 0.00 0.00 2.17
3380 6367 9.264719 GAAATGGAAACTGAAATCACTGAAATT 57.735 29.630 0.00 0.00 0.00 1.82
3381 6368 8.423349 TGAAATGGAAACTGAAATCACTGAAAT 58.577 29.630 0.00 0.00 0.00 2.17
3382 6369 7.780064 TGAAATGGAAACTGAAATCACTGAAA 58.220 30.769 0.00 0.00 0.00 2.69
3383 6370 7.345422 TGAAATGGAAACTGAAATCACTGAA 57.655 32.000 0.00 0.00 0.00 3.02
3384 6371 6.515531 GCTGAAATGGAAACTGAAATCACTGA 60.516 38.462 0.00 0.00 0.00 3.41
3385 6372 5.632347 GCTGAAATGGAAACTGAAATCACTG 59.368 40.000 0.00 0.00 0.00 3.66
3386 6373 5.279156 GGCTGAAATGGAAACTGAAATCACT 60.279 40.000 0.00 0.00 0.00 3.41
3387 6374 4.925646 GGCTGAAATGGAAACTGAAATCAC 59.074 41.667 0.00 0.00 0.00 3.06
3388 6375 4.588106 TGGCTGAAATGGAAACTGAAATCA 59.412 37.500 0.00 0.00 0.00 2.57
3389 6376 5.138125 TGGCTGAAATGGAAACTGAAATC 57.862 39.130 0.00 0.00 0.00 2.17
3390 6377 5.549742 TTGGCTGAAATGGAAACTGAAAT 57.450 34.783 0.00 0.00 0.00 2.17
3391 6378 5.350504 TTTGGCTGAAATGGAAACTGAAA 57.649 34.783 0.00 0.00 0.00 2.69
3392 6379 5.299148 CATTTGGCTGAAATGGAAACTGAA 58.701 37.500 11.68 0.00 45.06 3.02
3393 6380 4.885413 CATTTGGCTGAAATGGAAACTGA 58.115 39.130 11.68 0.00 45.06 3.41
3397 6384 8.359821 TTTCGGTCATTTGGCTGAAATGGAAA 62.360 38.462 13.66 15.05 46.47 3.13
3398 6385 6.962304 TTTCGGTCATTTGGCTGAAATGGAA 61.962 40.000 13.66 11.66 46.47 3.53
3399 6386 5.531829 TTTCGGTCATTTGGCTGAAATGGA 61.532 41.667 13.66 7.83 46.47 3.41
3400 6387 3.305950 TTTCGGTCATTTGGCTGAAATGG 60.306 43.478 13.66 6.22 46.47 3.16
3401 6388 3.911868 TTTCGGTCATTTGGCTGAAATG 58.088 40.909 13.66 12.79 46.47 2.32
3404 6391 5.417266 TGAATATTTCGGTCATTTGGCTGAA 59.583 36.000 2.35 2.35 42.66 3.02
3405 6392 4.946772 TGAATATTTCGGTCATTTGGCTGA 59.053 37.500 0.00 0.00 32.40 4.26
3406 6393 5.036737 GTGAATATTTCGGTCATTTGGCTG 58.963 41.667 0.00 0.00 0.00 4.85
3407 6394 4.949856 AGTGAATATTTCGGTCATTTGGCT 59.050 37.500 0.00 0.00 0.00 4.75
3408 6395 5.248870 AGTGAATATTTCGGTCATTTGGC 57.751 39.130 0.00 0.00 0.00 4.52
3409 6396 6.851609 TCAAGTGAATATTTCGGTCATTTGG 58.148 36.000 8.75 0.00 38.68 3.28
3410 6397 8.915871 ATTCAAGTGAATATTTCGGTCATTTG 57.084 30.769 4.71 4.16 42.48 2.32
3411 6398 9.573133 GAATTCAAGTGAATATTTCGGTCATTT 57.427 29.630 6.95 0.00 43.41 2.32
3412 6399 8.739039 TGAATTCAAGTGAATATTTCGGTCATT 58.261 29.630 5.45 0.00 43.41 2.57
3413 6400 8.279970 TGAATTCAAGTGAATATTTCGGTCAT 57.720 30.769 5.45 0.00 43.41 3.06
3414 6401 7.680442 TGAATTCAAGTGAATATTTCGGTCA 57.320 32.000 5.45 3.23 43.41 4.02
3415 6402 9.573133 AATTGAATTCAAGTGAATATTTCGGTC 57.427 29.630 24.17 0.85 43.41 4.79
3475 6462 9.524496 TCAGCATAGCAGAATAATTCCAATATT 57.476 29.630 0.00 0.00 0.00 1.28
3476 6463 9.524496 TTCAGCATAGCAGAATAATTCCAATAT 57.476 29.630 0.00 0.00 29.55 1.28
3477 6464 8.922931 TTCAGCATAGCAGAATAATTCCAATA 57.077 30.769 0.00 0.00 29.55 1.90
3478 6465 7.828508 TTCAGCATAGCAGAATAATTCCAAT 57.171 32.000 0.00 0.00 29.55 3.16
3479 6466 7.643569 TTTCAGCATAGCAGAATAATTCCAA 57.356 32.000 0.00 0.00 34.31 3.53
3480 6467 7.828508 ATTTCAGCATAGCAGAATAATTCCA 57.171 32.000 0.00 0.00 34.31 3.53
3481 6468 7.115947 GCAATTTCAGCATAGCAGAATAATTCC 59.884 37.037 0.00 0.00 34.31 3.01
3482 6469 7.866393 AGCAATTTCAGCATAGCAGAATAATTC 59.134 33.333 0.00 0.00 34.31 2.17
3483 6470 7.652105 CAGCAATTTCAGCATAGCAGAATAATT 59.348 33.333 0.00 0.00 34.31 1.40
3484 6471 7.013942 TCAGCAATTTCAGCATAGCAGAATAAT 59.986 33.333 0.00 0.00 34.31 1.28
3485 6472 6.319405 TCAGCAATTTCAGCATAGCAGAATAA 59.681 34.615 0.00 0.00 34.31 1.40
3486 6473 5.824097 TCAGCAATTTCAGCATAGCAGAATA 59.176 36.000 0.00 0.00 34.31 1.75
3487 6474 4.643334 TCAGCAATTTCAGCATAGCAGAAT 59.357 37.500 0.00 0.00 34.31 2.40
3488 6475 4.011698 TCAGCAATTTCAGCATAGCAGAA 58.988 39.130 0.00 0.00 32.52 3.02
3489 6476 3.613030 TCAGCAATTTCAGCATAGCAGA 58.387 40.909 0.00 0.00 0.00 4.26
3490 6477 4.365899 TTCAGCAATTTCAGCATAGCAG 57.634 40.909 0.00 0.00 0.00 4.24
3491 6478 4.787260 TTTCAGCAATTTCAGCATAGCA 57.213 36.364 0.00 0.00 0.00 3.49
3492 6479 7.941795 AATATTTCAGCAATTTCAGCATAGC 57.058 32.000 0.00 0.00 0.00 2.97
3494 6481 9.100554 CCAAAATATTTCAGCAATTTCAGCATA 57.899 29.630 0.10 0.00 0.00 3.14
3495 6482 7.414762 GCCAAAATATTTCAGCAATTTCAGCAT 60.415 33.333 14.39 0.00 0.00 3.79
3496 6483 6.128227 GCCAAAATATTTCAGCAATTTCAGCA 60.128 34.615 14.39 0.00 0.00 4.41
3497 6484 6.253013 GCCAAAATATTTCAGCAATTTCAGC 58.747 36.000 14.39 0.00 0.00 4.26
3498 6485 6.455913 CGGCCAAAATATTTCAGCAATTTCAG 60.456 38.462 18.73 3.61 0.00 3.02
3499 6486 5.350914 CGGCCAAAATATTTCAGCAATTTCA 59.649 36.000 18.73 0.00 0.00 2.69
3500 6487 5.580297 TCGGCCAAAATATTTCAGCAATTTC 59.420 36.000 18.73 5.61 0.00 2.17
3501 6488 5.486526 TCGGCCAAAATATTTCAGCAATTT 58.513 33.333 18.73 0.00 0.00 1.82
3502 6489 5.083533 TCGGCCAAAATATTTCAGCAATT 57.916 34.783 18.73 0.00 0.00 2.32
3503 6490 4.734398 TCGGCCAAAATATTTCAGCAAT 57.266 36.364 18.73 0.00 0.00 3.56
3504 6491 4.527509 TTCGGCCAAAATATTTCAGCAA 57.472 36.364 18.73 7.49 0.00 3.91
3505 6492 4.241681 GTTTCGGCCAAAATATTTCAGCA 58.758 39.130 18.73 2.88 0.00 4.41
3506 6493 3.303229 CGTTTCGGCCAAAATATTTCAGC 59.697 43.478 2.24 11.95 0.00 4.26
3507 6494 4.481463 ACGTTTCGGCCAAAATATTTCAG 58.519 39.130 2.24 0.00 0.00 3.02
3508 6495 4.506886 ACGTTTCGGCCAAAATATTTCA 57.493 36.364 2.24 0.00 0.00 2.69
3509 6496 8.791355 ATATTACGTTTCGGCCAAAATATTTC 57.209 30.769 2.24 0.00 0.00 2.17
3510 6497 9.589111 AAATATTACGTTTCGGCCAAAATATTT 57.411 25.926 2.24 11.26 35.11 1.40
3511 6498 9.240159 GAAATATTACGTTTCGGCCAAAATATT 57.760 29.630 2.24 6.54 32.32 1.28
3512 6499 8.407064 TGAAATATTACGTTTCGGCCAAAATAT 58.593 29.630 2.24 1.02 38.18 1.28
3513 6500 7.759465 TGAAATATTACGTTTCGGCCAAAATA 58.241 30.769 2.24 0.00 38.18 1.40
3514 6501 6.622549 TGAAATATTACGTTTCGGCCAAAAT 58.377 32.000 2.24 0.00 38.18 1.82
3515 6502 6.010294 TGAAATATTACGTTTCGGCCAAAA 57.990 33.333 2.24 0.00 38.18 2.44
3516 6503 5.181622 ACTGAAATATTACGTTTCGGCCAAA 59.818 36.000 2.24 0.00 42.81 3.28
3517 6504 4.696402 ACTGAAATATTACGTTTCGGCCAA 59.304 37.500 2.24 0.00 42.81 4.52
3518 6505 4.093703 CACTGAAATATTACGTTTCGGCCA 59.906 41.667 2.24 0.00 42.81 5.36
3519 6506 4.093850 ACACTGAAATATTACGTTTCGGCC 59.906 41.667 0.00 0.00 42.81 6.13
3520 6507 5.212589 ACACTGAAATATTACGTTTCGGC 57.787 39.130 0.00 0.00 42.81 5.54
3521 6508 6.032042 GCAAACACTGAAATATTACGTTTCGG 59.968 38.462 0.00 0.00 43.98 4.30
3522 6509 6.795114 AGCAAACACTGAAATATTACGTTTCG 59.205 34.615 0.00 0.00 38.18 3.46
3523 6510 7.801315 TCAGCAAACACTGAAATATTACGTTTC 59.199 33.333 0.00 0.00 43.59 2.78
3524 6511 7.644490 TCAGCAAACACTGAAATATTACGTTT 58.356 30.769 0.00 0.00 43.59 3.60
3525 6512 7.197071 TCAGCAAACACTGAAATATTACGTT 57.803 32.000 0.00 0.00 43.59 3.99
3526 6513 6.795098 TCAGCAAACACTGAAATATTACGT 57.205 33.333 0.00 0.00 43.59 3.57
3536 6523 4.198530 TCAGTCATTTCAGCAAACACTGA 58.801 39.130 8.18 8.18 44.84 3.41
3537 6524 4.556942 TCAGTCATTTCAGCAAACACTG 57.443 40.909 0.00 0.00 37.22 3.66
3538 6525 5.581126 TTTCAGTCATTTCAGCAAACACT 57.419 34.783 0.00 0.00 0.00 3.55
3539 6526 6.476380 TGAATTTCAGTCATTTCAGCAAACAC 59.524 34.615 0.00 0.00 0.00 3.32
3540 6527 6.571605 TGAATTTCAGTCATTTCAGCAAACA 58.428 32.000 0.00 0.00 0.00 2.83
3541 6528 7.101993 CTGAATTTCAGTCATTTCAGCAAAC 57.898 36.000 16.71 0.00 39.58 2.93
3546 6533 5.287170 TCGCTGAATTTCAGTCATTTCAG 57.713 39.130 23.66 7.06 45.94 3.02
3547 6534 5.687770 TTCGCTGAATTTCAGTCATTTCA 57.312 34.783 23.66 3.31 45.94 2.69
3548 6535 7.572502 AAATTCGCTGAATTTCAGTCATTTC 57.427 32.000 23.66 8.38 45.45 2.17
3564 6551 4.999950 AGTGAGATTTCAGTGAAATTCGCT 59.000 37.500 28.28 28.28 41.56 4.93
3565 6552 5.288543 AGTGAGATTTCAGTGAAATTCGC 57.711 39.130 27.48 26.77 41.56 4.70
3585 6572 4.097892 GTGACCATGGTTTTCACTTTCAGT 59.902 41.667 20.85 0.00 37.31 3.41
3586 6573 4.097741 TGTGACCATGGTTTTCACTTTCAG 59.902 41.667 26.66 0.00 40.34 3.02
3587 6574 4.019858 TGTGACCATGGTTTTCACTTTCA 58.980 39.130 26.66 13.14 40.34 2.69
3588 6575 4.610945 CTGTGACCATGGTTTTCACTTTC 58.389 43.478 26.66 10.99 40.34 2.62
3589 6576 3.181476 GCTGTGACCATGGTTTTCACTTT 60.181 43.478 26.66 1.49 40.34 2.66
3590 6577 2.362077 GCTGTGACCATGGTTTTCACTT 59.638 45.455 26.66 2.18 40.34 3.16
3591 6578 1.956477 GCTGTGACCATGGTTTTCACT 59.044 47.619 26.66 2.89 40.34 3.41
3592 6579 1.000274 GGCTGTGACCATGGTTTTCAC 60.000 52.381 20.85 21.76 40.14 3.18
3593 6580 1.327303 GGCTGTGACCATGGTTTTCA 58.673 50.000 20.85 16.50 0.00 2.69
3594 6581 0.603065 GGGCTGTGACCATGGTTTTC 59.397 55.000 20.85 12.79 0.00 2.29
3595 6582 0.105760 TGGGCTGTGACCATGGTTTT 60.106 50.000 20.85 0.00 34.69 2.43
3596 6583 0.540365 CTGGGCTGTGACCATGGTTT 60.540 55.000 20.85 0.00 41.49 3.27
3597 6584 1.075482 CTGGGCTGTGACCATGGTT 59.925 57.895 20.85 2.15 41.49 3.67
3598 6585 2.759114 CTGGGCTGTGACCATGGT 59.241 61.111 19.89 19.89 41.49 3.55
3599 6586 2.753043 GCTGGGCTGTGACCATGG 60.753 66.667 11.19 11.19 41.49 3.66
3600 6587 1.180456 TTTGCTGGGCTGTGACCATG 61.180 55.000 0.00 0.00 41.49 3.66
3601 6588 0.896940 CTTTGCTGGGCTGTGACCAT 60.897 55.000 0.00 0.00 41.49 3.55
3667 6654 6.091437 CAGATGAAGGAATTGTGCTCTTTTC 58.909 40.000 0.00 0.00 0.00 2.29
3680 6667 0.322816 GCCCTGTGCAGATGAAGGAA 60.323 55.000 0.02 0.00 40.77 3.36
3682 6669 1.030488 CAGCCCTGTGCAGATGAAGG 61.030 60.000 0.02 0.00 44.83 3.46
3695 6682 0.779997 ATTTCCCTGTGAACAGCCCT 59.220 50.000 4.87 0.00 42.47 5.19
3698 6685 3.507233 TCATTGATTTCCCTGTGAACAGC 59.493 43.478 4.87 0.00 42.47 4.40
3763 6752 1.213926 CCTGCTAATCAAAGAGGGCCT 59.786 52.381 5.25 5.25 0.00 5.19
3778 6767 2.622942 TCTGCGTTTTGAAATTCCTGCT 59.377 40.909 0.00 0.00 0.00 4.24
3800 6789 6.496911 TCATCCCGATTATGTATTTCTCCTGA 59.503 38.462 0.00 0.00 0.00 3.86
3806 6795 6.403636 GGCATGTCATCCCGATTATGTATTTC 60.404 42.308 0.00 0.00 0.00 2.17
3836 6825 8.271458 TGTGGTTTGCTAATCCTATAGAAATGA 58.729 33.333 0.00 0.00 0.00 2.57
3837 6826 8.450578 TGTGGTTTGCTAATCCTATAGAAATG 57.549 34.615 0.00 0.00 0.00 2.32
3985 6976 9.839817 TTTGATTCGTAGGATTGGACATTATAA 57.160 29.630 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.