Multiple sequence alignment - TraesCS5B01G303300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G303300 chr5B 100.000 4317 0 0 1 4317 487612597 487608281 0.000000e+00 7973
1 TraesCS5B01G303300 chr5D 96.151 1195 32 5 3131 4317 406596570 406595382 0.000000e+00 1940
2 TraesCS5B01G303300 chr5D 93.289 1207 59 10 831 2025 406598724 406597528 0.000000e+00 1760
3 TraesCS5B01G303300 chr5D 87.808 730 48 16 2028 2753 406597484 406596792 0.000000e+00 817
4 TraesCS5B01G303300 chr5D 89.846 325 29 2 1 323 406599378 406599056 8.640000e-112 414
5 TraesCS5B01G303300 chr5D 90.735 313 23 6 523 833 406599059 406598751 3.110000e-111 412
6 TraesCS5B01G303300 chr5D 91.031 223 16 2 2843 3065 406596789 406596571 9.080000e-77 298
7 TraesCS5B01G303300 chr5D 87.500 88 11 0 2764 2851 109535620 109535533 7.640000e-18 102
8 TraesCS5B01G303300 chr5D 87.500 88 11 0 2764 2851 112843006 112842919 7.640000e-18 102
9 TraesCS5B01G303300 chr5A 91.965 1145 65 13 905 2036 512237731 512236601 0.000000e+00 1580
10 TraesCS5B01G303300 chr5A 89.273 1100 68 24 3133 4203 512235690 512234612 0.000000e+00 1332
11 TraesCS5B01G303300 chr5A 94.030 670 35 5 2087 2753 512236588 512235921 0.000000e+00 1011
12 TraesCS5B01G303300 chr5A 95.516 223 9 1 2843 3065 512235918 512235697 5.310000e-94 355
13 TraesCS5B01G303300 chr5A 83.436 163 20 6 674 832 313313527 313313686 1.250000e-30 145
14 TraesCS5B01G303300 chr5A 95.714 70 3 0 833 902 512238055 512237986 3.530000e-21 113
15 TraesCS5B01G303300 chr7B 95.610 205 8 1 321 525 697031453 697031250 1.160000e-85 327
16 TraesCS5B01G303300 chr7B 93.627 204 11 2 324 527 479641868 479641667 1.950000e-78 303
17 TraesCS5B01G303300 chr7B 93.035 201 10 3 322 522 574507948 574507752 1.520000e-74 291
18 TraesCS5B01G303300 chr1B 93.237 207 12 2 321 527 423192812 423193016 1.950000e-78 303
19 TraesCS5B01G303300 chr4B 93.137 204 13 1 322 525 13071581 13071783 9.080000e-77 298
20 TraesCS5B01G303300 chr4B 97.222 72 2 0 3063 3134 82163463 82163392 5.860000e-24 122
21 TraesCS5B01G303300 chr4A 92.019 213 13 4 315 526 548818076 548818285 3.260000e-76 296
22 TraesCS5B01G303300 chr4A 85.350 157 18 5 682 836 142457697 142457544 1.610000e-34 158
23 TraesCS5B01G303300 chr6A 91.866 209 15 2 321 529 564852240 564852446 1.520000e-74 291
24 TraesCS5B01G303300 chr2B 92.574 202 14 1 318 519 697221896 697222096 5.460000e-74 289
25 TraesCS5B01G303300 chrUn 92.500 200 13 2 323 522 235817613 235817416 7.070000e-73 285
26 TraesCS5B01G303300 chr7D 86.275 153 18 3 682 833 189248506 189248656 3.450000e-36 163
27 TraesCS5B01G303300 chr7D 91.667 84 7 0 3051 3134 219834002 219833919 2.730000e-22 117
28 TraesCS5B01G303300 chr3B 83.735 166 18 8 676 836 672401581 672401420 9.670000e-32 148
29 TraesCS5B01G303300 chr3B 89.130 92 10 0 2764 2855 125879600 125879691 9.810000e-22 115
30 TraesCS5B01G303300 chr3A 84.076 157 20 5 682 836 83730419 83730266 3.480000e-31 147
31 TraesCS5B01G303300 chr3A 88.636 88 10 0 2764 2851 720848415 720848328 1.640000e-19 108
32 TraesCS5B01G303300 chr1A 83.974 156 22 3 679 833 505074944 505075097 3.480000e-31 147
33 TraesCS5B01G303300 chr6D 84.076 157 18 6 682 836 161146401 161146250 1.250000e-30 145
34 TraesCS5B01G303300 chr6D 98.592 71 1 0 3064 3134 363038162 363038092 4.530000e-25 126
35 TraesCS5B01G303300 chr6D 90.000 90 7 1 3045 3134 91566709 91566796 9.810000e-22 115
36 TraesCS5B01G303300 chr2A 83.871 155 19 6 682 833 9334625 9334474 4.500000e-30 143
37 TraesCS5B01G303300 chr2A 96.000 75 2 1 2773 2847 618291809 618291736 2.110000e-23 121
38 TraesCS5B01G303300 chr1D 98.592 71 1 0 3064 3134 335585124 335585054 4.530000e-25 126
39 TraesCS5B01G303300 chr1D 92.683 82 5 1 2764 2844 143254067 143254148 2.730000e-22 117
40 TraesCS5B01G303300 chr1D 89.412 85 9 0 2764 2848 467810095 467810179 1.640000e-19 108
41 TraesCS5B01G303300 chr2D 97.260 73 2 0 3062 3134 53145725 53145797 1.630000e-24 124
42 TraesCS5B01G303300 chr2D 90.123 81 8 0 2764 2844 644770518 644770438 5.900000e-19 106
43 TraesCS5B01G303300 chr7A 97.222 72 2 0 3063 3134 467851821 467851892 5.860000e-24 122
44 TraesCS5B01G303300 chr6B 91.667 84 7 0 3051 3134 290638546 290638463 2.730000e-22 117
45 TraesCS5B01G303300 chr6B 91.667 84 7 0 3051 3134 290666385 290666302 2.730000e-22 117
46 TraesCS5B01G303300 chr3D 88.235 85 10 0 2764 2848 329496870 329496954 7.640000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G303300 chr5B 487608281 487612597 4316 True 7973.000000 7973 100.000000 1 4317 1 chr5B.!!$R1 4316
1 TraesCS5B01G303300 chr5D 406595382 406599378 3996 True 940.166667 1940 91.476667 1 4317 6 chr5D.!!$R3 4316
2 TraesCS5B01G303300 chr5A 512234612 512238055 3443 True 878.200000 1580 93.299600 833 4203 5 chr5A.!!$R1 3370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 385 0.182299 CCCCAGCTTCTCCCAGAATC 59.818 60.000 0.00 0.00 33.13 2.52 F
479 482 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96 F
480 483 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81 F
1991 2296 0.324460 AGTGTCCTCTCTTACCCCGG 60.324 60.000 0.00 0.00 0.00 5.73 F
2874 3225 1.069204 TGCTGGTCACAGTGAAGAGTC 59.931 52.381 4.32 2.04 46.62 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1844 0.396435 ATTGACACCGGAGAACTGCA 59.604 50.000 9.46 0.0 0.00 4.41 R
2166 2514 1.079503 GTTGGCGTCTCCATCTGTTC 58.920 55.000 0.00 0.0 46.04 3.18 R
2474 2824 1.205655 TGAACCATCTGAAGGCTCTCG 59.794 52.381 0.00 0.0 0.00 4.04 R
2964 3315 0.179174 GGGGCGCTAAAAACACATCG 60.179 55.000 7.64 0.0 0.00 3.84 R
4011 4384 0.666577 AGAAGAACCGAACCGAAGCG 60.667 55.000 0.00 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.324943 ACGCTAGCCTGGTGAACAAT 59.675 50.000 9.66 0.00 0.00 2.71
80 81 2.276201 CTATTGATCGTGGCGTTTCCA 58.724 47.619 0.00 0.00 44.18 3.53
96 97 1.374560 TCCACACACAACCGAAACAG 58.625 50.000 0.00 0.00 0.00 3.16
98 99 0.588730 CACACACAACCGAAACAGCG 60.589 55.000 0.00 0.00 0.00 5.18
106 107 1.154413 CCGAAACAGCGTGATGTGC 60.154 57.895 0.00 0.00 32.52 4.57
117 118 2.050533 GATGTGCGGCGTTTGCAA 60.051 55.556 9.37 0.00 45.23 4.08
123 124 1.272423 GCGGCGTTTGCAAAAACAG 59.728 52.632 14.67 10.61 45.35 3.16
131 132 2.871633 GTTTGCAAAAACAGTCATGGGG 59.128 45.455 14.67 0.00 33.08 4.96
133 134 2.607499 TGCAAAAACAGTCATGGGGAT 58.393 42.857 0.00 0.00 0.00 3.85
138 139 1.217057 AACAGTCATGGGGATGGGCT 61.217 55.000 0.00 0.00 0.00 5.19
144 145 1.117150 CATGGGGATGGGCTTCTTTG 58.883 55.000 0.00 0.00 0.00 2.77
151 152 2.291741 GGATGGGCTTCTTTGATTAGCG 59.708 50.000 0.00 0.00 35.77 4.26
164 165 7.309920 TCTTTGATTAGCGGGAATTACAAAAC 58.690 34.615 0.00 0.00 0.00 2.43
170 171 3.886505 AGCGGGAATTACAAAACACTGAA 59.113 39.130 0.00 0.00 0.00 3.02
174 175 6.526674 GCGGGAATTACAAAACACTGAAATAG 59.473 38.462 0.00 0.00 0.00 1.73
176 177 7.749126 CGGGAATTACAAAACACTGAAATAGAC 59.251 37.037 0.00 0.00 0.00 2.59
177 178 8.027189 GGGAATTACAAAACACTGAAATAGACC 58.973 37.037 0.00 0.00 0.00 3.85
329 332 5.387113 TTCATATGAAATGTAGGGCCAGT 57.613 39.130 15.82 0.00 0.00 4.00
330 333 5.387113 TCATATGAAATGTAGGGCCAGTT 57.613 39.130 6.18 0.00 0.00 3.16
331 334 5.376625 TCATATGAAATGTAGGGCCAGTTC 58.623 41.667 6.18 0.25 39.27 3.01
332 335 5.132648 TCATATGAAATGTAGGGCCAGTTCT 59.867 40.000 6.18 0.00 39.48 3.01
333 336 3.806949 TGAAATGTAGGGCCAGTTCTT 57.193 42.857 6.18 0.00 39.48 2.52
334 337 4.112634 TGAAATGTAGGGCCAGTTCTTT 57.887 40.909 6.18 0.00 39.48 2.52
335 338 4.479158 TGAAATGTAGGGCCAGTTCTTTT 58.521 39.130 6.18 3.84 39.48 2.27
336 339 4.280677 TGAAATGTAGGGCCAGTTCTTTTG 59.719 41.667 6.18 0.00 39.48 2.44
337 340 2.286365 TGTAGGGCCAGTTCTTTTGG 57.714 50.000 6.18 0.00 38.78 3.28
338 341 1.203001 TGTAGGGCCAGTTCTTTTGGG 60.203 52.381 6.18 0.00 36.19 4.12
341 344 3.758172 GCCAGTTCTTTTGGGCGA 58.242 55.556 0.00 0.00 36.58 5.54
342 345 2.267045 GCCAGTTCTTTTGGGCGAT 58.733 52.632 0.00 0.00 36.58 4.58
343 346 0.603065 GCCAGTTCTTTTGGGCGATT 59.397 50.000 0.00 0.00 36.58 3.34
344 347 1.402852 GCCAGTTCTTTTGGGCGATTC 60.403 52.381 0.00 0.00 36.58 2.52
345 348 1.202348 CCAGTTCTTTTGGGCGATTCC 59.798 52.381 0.00 0.00 31.87 3.01
357 360 2.854522 CGATTCCCCCATAATCGCC 58.145 57.895 5.41 0.00 46.21 5.54
358 361 0.676782 CGATTCCCCCATAATCGCCC 60.677 60.000 5.41 0.00 46.21 6.13
359 362 0.323451 GATTCCCCCATAATCGCCCC 60.323 60.000 0.00 0.00 0.00 5.80
360 363 0.776080 ATTCCCCCATAATCGCCCCT 60.776 55.000 0.00 0.00 0.00 4.79
361 364 1.423794 TTCCCCCATAATCGCCCCTC 61.424 60.000 0.00 0.00 0.00 4.30
362 365 1.847968 CCCCCATAATCGCCCCTCT 60.848 63.158 0.00 0.00 0.00 3.69
363 366 1.679898 CCCCATAATCGCCCCTCTC 59.320 63.158 0.00 0.00 0.00 3.20
364 367 1.679898 CCCATAATCGCCCCTCTCC 59.320 63.158 0.00 0.00 0.00 3.71
365 368 1.679898 CCATAATCGCCCCTCTCCC 59.320 63.158 0.00 0.00 0.00 4.30
366 369 1.679898 CATAATCGCCCCTCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
367 370 1.127567 CATAATCGCCCCTCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
368 371 0.838122 ATAATCGCCCCTCTCCCCAG 60.838 60.000 0.00 0.00 0.00 4.45
372 375 3.803162 GCCCCTCTCCCCAGCTTC 61.803 72.222 0.00 0.00 0.00 3.86
373 376 2.041928 CCCCTCTCCCCAGCTTCT 59.958 66.667 0.00 0.00 0.00 2.85
374 377 2.069430 CCCCTCTCCCCAGCTTCTC 61.069 68.421 0.00 0.00 0.00 2.87
375 378 2.069430 CCCTCTCCCCAGCTTCTCC 61.069 68.421 0.00 0.00 0.00 3.71
376 379 2.069430 CCTCTCCCCAGCTTCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
377 380 1.306482 CTCTCCCCAGCTTCTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
378 381 1.306482 TCTCCCCAGCTTCTCCCAG 60.306 63.158 0.00 0.00 0.00 4.45
379 382 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
380 383 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
381 384 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
382 385 0.182299 CCCCAGCTTCTCCCAGAATC 59.818 60.000 0.00 0.00 33.13 2.52
383 386 0.914644 CCCAGCTTCTCCCAGAATCA 59.085 55.000 0.00 0.00 33.13 2.57
384 387 1.493871 CCCAGCTTCTCCCAGAATCAT 59.506 52.381 0.00 0.00 33.13 2.45
385 388 2.091994 CCCAGCTTCTCCCAGAATCATT 60.092 50.000 0.00 0.00 33.13 2.57
386 389 3.137176 CCCAGCTTCTCCCAGAATCATTA 59.863 47.826 0.00 0.00 33.13 1.90
387 390 4.133078 CCAGCTTCTCCCAGAATCATTAC 58.867 47.826 0.00 0.00 33.13 1.89
388 391 4.141528 CCAGCTTCTCCCAGAATCATTACT 60.142 45.833 0.00 0.00 33.13 2.24
389 392 5.435291 CAGCTTCTCCCAGAATCATTACTT 58.565 41.667 0.00 0.00 33.13 2.24
390 393 5.526846 CAGCTTCTCCCAGAATCATTACTTC 59.473 44.000 0.00 0.00 33.13 3.01
391 394 5.190528 AGCTTCTCCCAGAATCATTACTTCA 59.809 40.000 0.00 0.00 33.13 3.02
392 395 6.060788 GCTTCTCCCAGAATCATTACTTCAT 58.939 40.000 0.00 0.00 33.13 2.57
393 396 7.071698 AGCTTCTCCCAGAATCATTACTTCATA 59.928 37.037 0.00 0.00 33.13 2.15
394 397 7.882271 GCTTCTCCCAGAATCATTACTTCATAT 59.118 37.037 0.00 0.00 33.13 1.78
395 398 9.790344 CTTCTCCCAGAATCATTACTTCATATT 57.210 33.333 0.00 0.00 33.13 1.28
428 431 9.214962 ACAATCCTAGCTAATTAGACCTTAACT 57.785 33.333 16.85 4.44 0.00 2.24
468 471 6.780457 AAAATATGAAGTGGTGATTCTGGG 57.220 37.500 0.00 0.00 0.00 4.45
469 472 5.715439 AATATGAAGTGGTGATTCTGGGA 57.285 39.130 0.00 0.00 0.00 4.37
470 473 3.641434 ATGAAGTGGTGATTCTGGGAG 57.359 47.619 0.00 0.00 0.00 4.30
471 474 2.619931 TGAAGTGGTGATTCTGGGAGA 58.380 47.619 0.00 0.00 0.00 3.71
472 475 2.978978 TGAAGTGGTGATTCTGGGAGAA 59.021 45.455 0.00 0.00 38.78 2.87
473 476 3.008375 TGAAGTGGTGATTCTGGGAGAAG 59.992 47.826 0.00 0.00 37.69 2.85
474 477 1.280421 AGTGGTGATTCTGGGAGAAGC 59.720 52.381 0.00 0.00 40.77 3.86
475 478 1.280421 GTGGTGATTCTGGGAGAAGCT 59.720 52.381 3.49 0.00 40.96 3.74
476 479 1.280133 TGGTGATTCTGGGAGAAGCTG 59.720 52.381 3.49 0.00 40.96 4.24
477 480 1.407989 GGTGATTCTGGGAGAAGCTGG 60.408 57.143 3.49 0.00 40.96 4.85
478 481 0.914644 TGATTCTGGGAGAAGCTGGG 59.085 55.000 3.49 0.00 40.96 4.45
479 482 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96
480 483 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
481 484 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
482 485 2.285668 TGGGAGAAGCTGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
483 486 3.093172 GGGAGAAGCTGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
484 487 3.093172 GGAGAAGCTGGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
485 488 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
502 505 2.658807 GGGGGCGATTTTAGGAGAAT 57.341 50.000 0.00 0.00 0.00 2.40
503 506 2.505405 GGGGGCGATTTTAGGAGAATC 58.495 52.381 0.00 0.00 0.00 2.52
508 511 2.833794 CGATTTTAGGAGAATCGCCCA 58.166 47.619 0.00 0.00 46.06 5.36
509 512 3.202906 CGATTTTAGGAGAATCGCCCAA 58.797 45.455 0.00 0.00 46.06 4.12
510 513 3.625764 CGATTTTAGGAGAATCGCCCAAA 59.374 43.478 0.00 0.00 46.06 3.28
511 514 4.095782 CGATTTTAGGAGAATCGCCCAAAA 59.904 41.667 10.99 10.99 46.06 2.44
512 515 5.582550 GATTTTAGGAGAATCGCCCAAAAG 58.417 41.667 13.45 0.00 34.37 2.27
513 516 3.992943 TTAGGAGAATCGCCCAAAAGA 57.007 42.857 0.00 0.00 34.37 2.52
514 517 2.879103 AGGAGAATCGCCCAAAAGAA 57.121 45.000 0.00 0.00 34.37 2.52
515 518 2.437413 AGGAGAATCGCCCAAAAGAAC 58.563 47.619 0.00 0.00 34.37 3.01
516 519 2.040412 AGGAGAATCGCCCAAAAGAACT 59.960 45.455 0.00 0.00 34.37 3.01
517 520 2.162408 GGAGAATCGCCCAAAAGAACTG 59.838 50.000 0.00 0.00 34.37 3.16
518 521 2.162408 GAGAATCGCCCAAAAGAACTGG 59.838 50.000 0.00 0.00 0.00 4.00
523 526 4.174305 CCAAAAGAACTGGGCCGT 57.826 55.556 0.00 0.00 0.00 5.68
524 527 3.332706 CCAAAAGAACTGGGCCGTA 57.667 52.632 0.00 0.00 0.00 4.02
525 528 1.165270 CCAAAAGAACTGGGCCGTAG 58.835 55.000 0.00 0.00 0.00 3.51
529 532 4.383335 CCAAAAGAACTGGGCCGTAGTATA 60.383 45.833 11.24 0.00 0.00 1.47
531 534 5.625568 AAAGAACTGGGCCGTAGTATAAT 57.374 39.130 11.24 0.00 0.00 1.28
535 538 3.428532 ACTGGGCCGTAGTATAATCGAT 58.571 45.455 9.35 0.00 0.00 3.59
597 601 7.054855 TCAAACGACCAACAAAGAAAAATTG 57.945 32.000 0.00 0.00 0.00 2.32
633 637 9.927668 CTAATCCTCCAAAAATCTCTATCTCTC 57.072 37.037 0.00 0.00 0.00 3.20
635 639 5.604650 TCCTCCAAAAATCTCTATCTCTCCC 59.395 44.000 0.00 0.00 0.00 4.30
636 640 5.606329 CCTCCAAAAATCTCTATCTCTCCCT 59.394 44.000 0.00 0.00 0.00 4.20
637 641 6.464180 CCTCCAAAAATCTCTATCTCTCCCTG 60.464 46.154 0.00 0.00 0.00 4.45
730 735 6.828785 ACTTACATTCTGAACAGTTCCACTTT 59.171 34.615 10.93 0.00 0.00 2.66
839 844 3.906720 TGAGCAGGTAAATCCCACTAC 57.093 47.619 0.00 0.00 36.75 2.73
848 881 0.676782 AATCCCACTACAAGGCACGC 60.677 55.000 0.00 0.00 0.00 5.34
984 1271 3.555966 ACTGTTTCCCCAGAGAAAACAG 58.444 45.455 19.95 19.95 37.49 3.16
1124 1418 3.087031 TCAAAGGTACGTGTAGCTAGCT 58.913 45.455 23.12 23.12 42.42 3.32
1132 1426 1.192793 GTGTAGCTAGCTTCGCTTCG 58.807 55.000 24.88 0.00 40.44 3.79
1142 1436 1.354040 CTTCGCTTCGTGATTCTGCT 58.646 50.000 0.00 0.00 0.00 4.24
1223 1523 1.315690 ATGGATGCTCGATTGCCAAG 58.684 50.000 0.00 0.00 31.53 3.61
1303 1603 7.495279 GTGATGTGATTCAGAGAAAATAGCTCT 59.505 37.037 0.00 0.00 43.21 4.09
1312 1612 8.853077 TCAGAGAAAATAGCTCTCAAATTTCA 57.147 30.769 0.00 0.00 40.60 2.69
1353 1656 7.213678 AGGAGCTGTTTAGATCTTATTACTGC 58.786 38.462 0.00 9.69 39.29 4.40
1398 1701 9.063615 GTACTAAATATACCATTTTCCCCTGTG 57.936 37.037 0.00 0.00 0.00 3.66
1503 1808 0.792640 CATCGAAAGCGTCACTTGCT 59.207 50.000 0.00 0.00 46.68 3.91
1504 1809 1.071605 ATCGAAAGCGTCACTTGCTC 58.928 50.000 0.00 0.00 43.14 4.26
1505 1810 1.128611 CGAAAGCGTCACTTGCTCG 59.871 57.895 0.00 0.00 43.14 5.03
1506 1811 1.493311 GAAAGCGTCACTTGCTCGG 59.507 57.895 0.00 0.00 43.14 4.63
1507 1812 0.944311 GAAAGCGTCACTTGCTCGGA 60.944 55.000 0.00 0.00 43.14 4.55
1508 1813 0.946221 AAAGCGTCACTTGCTCGGAG 60.946 55.000 0.00 0.00 43.14 4.63
1539 1844 7.054491 GGTACCATTTCTGATGGCAAATTAT 57.946 36.000 7.15 0.00 42.82 1.28
1559 1864 1.621317 TGCAGTTCTCCGGTGTCAATA 59.379 47.619 0.00 0.00 0.00 1.90
1609 1914 9.461312 AGTAGCATAAATGAAAGTTTGATACCA 57.539 29.630 0.00 0.00 30.34 3.25
1637 1942 6.332735 TCCTGGATCTGAGTACATAAATCG 57.667 41.667 0.00 0.00 0.00 3.34
1674 1979 4.960938 ACTGTGATTCTGTAGAAGTTGCA 58.039 39.130 0.51 0.00 37.48 4.08
1799 2104 5.306678 TCCTGTTAAATTTGTCCCAGCATTT 59.693 36.000 0.00 0.00 0.00 2.32
1809 2114 3.286404 CCAGCATTTGTGGATGGGA 57.714 52.632 0.00 0.00 37.23 4.37
1823 2128 5.130145 TGTGGATGGGAATTTTGTTGTTTCT 59.870 36.000 0.00 0.00 0.00 2.52
1928 2233 9.336171 TGTGCAGTGATATATTAGCAATTAACA 57.664 29.630 0.00 0.00 33.37 2.41
1930 2235 9.777297 TGCAGTGATATATTAGCAATTAACAGA 57.223 29.630 0.00 0.00 0.00 3.41
1991 2296 0.324460 AGTGTCCTCTCTTACCCCGG 60.324 60.000 0.00 0.00 0.00 5.73
2025 2330 7.709149 AAGAAAGCTCTTAATTTGCAGGTAT 57.291 32.000 0.00 0.00 40.26 2.73
2026 2331 8.807948 AAGAAAGCTCTTAATTTGCAGGTATA 57.192 30.769 0.00 0.00 40.26 1.47
2067 2413 2.142356 CCAAGGATACCATTGGCACA 57.858 50.000 1.54 0.00 39.58 4.57
2068 2414 2.455557 CCAAGGATACCATTGGCACAA 58.544 47.619 1.54 0.00 41.34 3.33
2069 2415 2.830923 CCAAGGATACCATTGGCACAAA 59.169 45.455 1.54 0.00 41.34 2.83
2070 2416 3.260380 CCAAGGATACCATTGGCACAAAA 59.740 43.478 1.54 0.00 41.34 2.44
2073 2419 3.511146 AGGATACCATTGGCACAAAACAG 59.489 43.478 1.54 0.00 41.34 3.16
2123 2471 7.379529 ACAATTCGAAGCACTGAAATAAGTTTG 59.620 33.333 3.35 0.00 0.00 2.93
2166 2514 9.213819 GAACTTGTTGTAAGTTAACGGTTTTAG 57.786 33.333 0.00 0.00 40.27 1.85
2180 2528 3.612860 CGGTTTTAGAACAGATGGAGACG 59.387 47.826 0.00 0.00 37.51 4.18
2192 2540 2.851263 TGGAGACGCCAACTAATTGT 57.149 45.000 0.00 0.00 45.87 2.71
2193 2541 3.965379 TGGAGACGCCAACTAATTGTA 57.035 42.857 0.00 0.00 45.87 2.41
2194 2542 4.481368 TGGAGACGCCAACTAATTGTAT 57.519 40.909 0.00 0.00 45.87 2.29
2195 2543 4.439057 TGGAGACGCCAACTAATTGTATC 58.561 43.478 0.00 0.00 45.87 2.24
2196 2544 4.161565 TGGAGACGCCAACTAATTGTATCT 59.838 41.667 0.00 0.00 45.87 1.98
2197 2545 4.508124 GGAGACGCCAACTAATTGTATCTG 59.492 45.833 0.00 0.00 36.34 2.90
2260 2610 6.847792 CACATTTAGTATGCGCACTTCATAAG 59.152 38.462 14.90 2.80 0.00 1.73
2394 2744 5.566826 GCCAGAATTAAACTCCCCTTTCAAC 60.567 44.000 0.00 0.00 0.00 3.18
2409 2759 6.659242 CCCCTTTCAACTATAGTGTGACAATT 59.341 38.462 6.06 0.00 0.00 2.32
2436 2786 8.197439 TCCATATACGCTTGGTTCTATATGATG 58.803 37.037 6.88 0.00 31.21 3.07
2474 2824 2.424474 TGGCACAATGGACACCAAC 58.576 52.632 0.00 0.00 36.95 3.77
2607 2958 7.244192 TCAGTCTCGCGTTCATAATCATATAG 58.756 38.462 5.77 0.00 0.00 1.31
2637 2988 2.496070 TGTTGGTCTGAACTATCCTCGG 59.504 50.000 0.00 0.00 0.00 4.63
2704 3055 2.810274 CAAATATGCCACCGGAGATGAG 59.190 50.000 9.46 0.00 0.00 2.90
2753 3104 4.019771 TCAAAACCCAGGCTTTGTTCTTTT 60.020 37.500 11.31 0.00 34.12 2.27
2754 3105 4.568072 AAACCCAGGCTTTGTTCTTTTT 57.432 36.364 0.00 0.00 0.00 1.94
2786 3137 5.757099 CCCCCGTTCCATAATATAAGAGT 57.243 43.478 0.00 0.00 0.00 3.24
2787 3138 5.488341 CCCCCGTTCCATAATATAAGAGTG 58.512 45.833 0.00 0.00 0.00 3.51
2788 3139 5.012768 CCCCCGTTCCATAATATAAGAGTGT 59.987 44.000 0.00 0.00 0.00 3.55
2789 3140 6.465321 CCCCCGTTCCATAATATAAGAGTGTT 60.465 42.308 0.00 0.00 0.00 3.32
2790 3141 6.996282 CCCCGTTCCATAATATAAGAGTGTTT 59.004 38.462 0.00 0.00 0.00 2.83
2791 3142 7.501225 CCCCGTTCCATAATATAAGAGTGTTTT 59.499 37.037 0.00 0.00 0.00 2.43
2792 3143 8.899771 CCCGTTCCATAATATAAGAGTGTTTTT 58.100 33.333 0.00 0.00 0.00 1.94
2793 3144 9.716507 CCGTTCCATAATATAAGAGTGTTTTTG 57.283 33.333 0.00 0.00 0.00 2.44
2808 3159 4.513442 TGTTTTTGACACTGCACTAGAGT 58.487 39.130 0.00 0.00 32.00 3.24
2809 3160 5.666462 TGTTTTTGACACTGCACTAGAGTA 58.334 37.500 0.00 0.00 32.00 2.59
2810 3161 6.288294 TGTTTTTGACACTGCACTAGAGTAT 58.712 36.000 0.00 0.00 32.00 2.12
2811 3162 7.438564 TGTTTTTGACACTGCACTAGAGTATA 58.561 34.615 0.00 0.00 32.00 1.47
2812 3163 7.929245 TGTTTTTGACACTGCACTAGAGTATAA 59.071 33.333 0.00 0.00 32.00 0.98
2813 3164 8.770828 GTTTTTGACACTGCACTAGAGTATAAA 58.229 33.333 0.00 0.00 29.89 1.40
2814 3165 8.896320 TTTTGACACTGCACTAGAGTATAAAA 57.104 30.769 0.00 0.00 30.92 1.52
2815 3166 7.884816 TTGACACTGCACTAGAGTATAAAAC 57.115 36.000 0.00 0.00 29.89 2.43
2816 3167 6.090783 TGACACTGCACTAGAGTATAAAACG 58.909 40.000 0.00 0.00 29.89 3.60
2817 3168 4.863131 ACACTGCACTAGAGTATAAAACGC 59.137 41.667 0.00 0.00 0.00 4.84
2818 3169 5.103000 CACTGCACTAGAGTATAAAACGCT 58.897 41.667 0.00 0.00 41.56 5.07
2819 3170 5.004821 CACTGCACTAGAGTATAAAACGCTG 59.995 44.000 0.00 0.00 38.82 5.18
2820 3171 5.068234 TGCACTAGAGTATAAAACGCTGT 57.932 39.130 0.00 0.00 38.82 4.40
2821 3172 5.475719 TGCACTAGAGTATAAAACGCTGTT 58.524 37.500 0.00 0.00 38.82 3.16
2822 3173 6.623486 TGCACTAGAGTATAAAACGCTGTTA 58.377 36.000 0.00 0.00 38.82 2.41
2823 3174 7.262772 TGCACTAGAGTATAAAACGCTGTTAT 58.737 34.615 0.00 0.00 38.82 1.89
2824 3175 8.407832 TGCACTAGAGTATAAAACGCTGTTATA 58.592 33.333 0.00 0.00 38.82 0.98
2825 3176 9.408069 GCACTAGAGTATAAAACGCTGTTATAT 57.592 33.333 0.00 0.00 38.82 0.86
2834 3185 5.917541 AAACGCTGTTATATTATGGGACG 57.082 39.130 0.00 0.00 0.00 4.79
2835 3186 3.921677 ACGCTGTTATATTATGGGACGG 58.078 45.455 0.00 0.00 0.00 4.79
2836 3187 3.575256 ACGCTGTTATATTATGGGACGGA 59.425 43.478 0.00 0.00 0.00 4.69
2837 3188 4.174009 CGCTGTTATATTATGGGACGGAG 58.826 47.826 0.00 0.00 0.00 4.63
2838 3189 4.504858 GCTGTTATATTATGGGACGGAGG 58.495 47.826 0.00 0.00 0.00 4.30
2839 3190 4.623171 GCTGTTATATTATGGGACGGAGGG 60.623 50.000 0.00 0.00 0.00 4.30
2840 3191 4.754311 TGTTATATTATGGGACGGAGGGA 58.246 43.478 0.00 0.00 0.00 4.20
2841 3192 4.775780 TGTTATATTATGGGACGGAGGGAG 59.224 45.833 0.00 0.00 0.00 4.30
2874 3225 1.069204 TGCTGGTCACAGTGAAGAGTC 59.931 52.381 4.32 2.04 46.62 3.36
2906 3257 6.098982 AGTGCTCTACTTACATTCCTGCTAAT 59.901 38.462 0.00 0.00 35.67 1.73
2914 3265 8.494016 ACTTACATTCCTGCTAATTCTGTTAC 57.506 34.615 0.00 0.00 0.00 2.50
2964 3315 8.814038 ATATATATTCTGGTCATTTTCAGGCC 57.186 34.615 0.00 0.00 0.00 5.19
3030 3381 6.514870 GCTTCCAAATCGATATGGTATGCAAA 60.515 38.462 0.00 0.00 37.94 3.68
3048 3399 9.555727 GTATGCAAATGTTACCCTATTCTAAGA 57.444 33.333 0.00 0.00 0.00 2.10
3065 3416 6.443934 TCTAAGATCTCTGTTGCTGAGTAC 57.556 41.667 0.00 0.00 32.50 2.73
3066 3417 6.184068 TCTAAGATCTCTGTTGCTGAGTACT 58.816 40.000 0.00 0.00 32.50 2.73
3067 3418 4.981806 AGATCTCTGTTGCTGAGTACTC 57.018 45.455 16.32 16.32 32.50 2.59
3068 3419 3.699038 AGATCTCTGTTGCTGAGTACTCC 59.301 47.826 20.11 6.32 32.50 3.85
3069 3420 2.171840 TCTCTGTTGCTGAGTACTCCC 58.828 52.381 20.11 11.47 32.50 4.30
3070 3421 2.175202 CTCTGTTGCTGAGTACTCCCT 58.825 52.381 20.11 0.00 0.00 4.20
3071 3422 2.165437 CTCTGTTGCTGAGTACTCCCTC 59.835 54.545 20.11 9.40 0.00 4.30
3072 3423 1.205893 CTGTTGCTGAGTACTCCCTCC 59.794 57.143 20.11 6.36 0.00 4.30
3073 3424 1.267121 GTTGCTGAGTACTCCCTCCA 58.733 55.000 20.11 8.77 0.00 3.86
3074 3425 1.834263 GTTGCTGAGTACTCCCTCCAT 59.166 52.381 20.11 0.00 0.00 3.41
3075 3426 1.781786 TGCTGAGTACTCCCTCCATC 58.218 55.000 20.11 0.00 0.00 3.51
3076 3427 1.044611 GCTGAGTACTCCCTCCATCC 58.955 60.000 20.11 0.00 0.00 3.51
3077 3428 1.710816 CTGAGTACTCCCTCCATCCC 58.289 60.000 20.11 0.00 0.00 3.85
3078 3429 1.015609 TGAGTACTCCCTCCATCCCA 58.984 55.000 20.11 0.00 0.00 4.37
3079 3430 1.580658 TGAGTACTCCCTCCATCCCAT 59.419 52.381 20.11 0.00 0.00 4.00
3080 3431 2.795360 TGAGTACTCCCTCCATCCCATA 59.205 50.000 20.11 0.00 0.00 2.74
3081 3432 3.208922 TGAGTACTCCCTCCATCCCATAA 59.791 47.826 20.11 0.00 0.00 1.90
3082 3433 4.140447 TGAGTACTCCCTCCATCCCATAAT 60.140 45.833 20.11 0.00 0.00 1.28
3083 3434 5.077300 TGAGTACTCCCTCCATCCCATAATA 59.923 44.000 20.11 0.00 0.00 0.98
3084 3435 6.185677 AGTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
3085 3436 7.035394 TGAGTACTCCCTCCATCCCATAATATA 60.035 40.741 20.11 0.00 0.00 0.86
3086 3437 7.729350 AGTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
3087 3438 7.846823 AGTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
3088 3439 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
3089 3440 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
3090 3441 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
3091 3442 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
3092 3443 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
3093 3444 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
3094 3445 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
3095 3446 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
3096 3447 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3227 3579 4.081087 TCTGGCAGTCAAAGTACCCTATTC 60.081 45.833 15.27 0.00 0.00 1.75
3245 3597 3.719268 TTCTGGCAAGGCTTCAAGATA 57.281 42.857 0.00 0.00 0.00 1.98
3396 3748 6.525121 TGTAACTTCAAAGTCAGATGTTCG 57.475 37.500 0.00 0.00 38.57 3.95
3401 3753 6.223852 ACTTCAAAGTCAGATGTTCGTGTAT 58.776 36.000 0.00 0.00 32.86 2.29
3413 3765 0.035820 TCGTGTATGCAAAGACCCCC 60.036 55.000 0.00 0.00 0.00 5.40
3482 3834 9.715123 TTTATCATATGTGCTCGTGTAAAATTG 57.285 29.630 1.90 0.00 0.00 2.32
3514 3866 7.885399 TCAATAAAGAGAAGGAAAGAAAGGAGG 59.115 37.037 0.00 0.00 0.00 4.30
3537 3889 2.294233 GAGTCAAGCTCAAACATTGCCA 59.706 45.455 0.00 0.00 43.58 4.92
3540 3892 2.028839 TCAAGCTCAAACATTGCCATGG 60.029 45.455 7.63 7.63 34.27 3.66
3546 3898 3.164268 TCAAACATTGCCATGGTAAGCT 58.836 40.909 20.40 5.27 34.27 3.74
3968 4341 0.802607 GTGTCCGGATCGCTCTCAAC 60.803 60.000 7.81 0.00 0.00 3.18
4011 4384 4.037923 TGTTGAGGTTTTGGAGCTTCAATC 59.962 41.667 8.64 3.58 35.91 2.67
4017 4390 1.078709 TTGGAGCTTCAATCGCTTCG 58.921 50.000 2.32 0.00 37.96 3.79
4176 4552 3.191371 CCAGCTGTGTATTTTCTTGGTCC 59.809 47.826 13.81 0.00 0.00 4.46
4177 4553 3.191371 CAGCTGTGTATTTTCTTGGTCCC 59.809 47.826 5.25 0.00 0.00 4.46
4192 4568 2.167693 TGGTCCCGAACATGTAGATGAC 59.832 50.000 6.90 4.42 33.36 3.06
4265 4641 7.921786 TTTCTTCAGTTCTTCTCTGTTTTCA 57.078 32.000 0.00 0.00 34.86 2.69
4310 4693 2.425668 GTTTGGGCTGTAGTGTTTGTGT 59.574 45.455 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.872240 GCCAACTATTGTTCACCAGGCTA 60.872 47.826 9.90 0.00 37.31 3.93
28 29 1.302192 GTTCGCCACCAGCCAACTA 60.302 57.895 0.00 0.00 39.27 2.24
80 81 1.022451 ACGCTGTTTCGGTTGTGTGT 61.022 50.000 0.00 0.00 0.00 3.72
81 82 0.588730 CACGCTGTTTCGGTTGTGTG 60.589 55.000 0.00 0.00 35.19 3.82
96 97 4.383602 AAACGCCGCACATCACGC 62.384 61.111 0.00 0.00 0.00 5.34
98 99 2.800746 GCAAACGCCGCACATCAC 60.801 61.111 0.00 0.00 0.00 3.06
106 107 0.570272 GACTGTTTTTGCAAACGCCG 59.430 50.000 12.39 6.70 44.76 6.46
117 118 1.896755 GCCCATCCCCATGACTGTTTT 60.897 52.381 0.00 0.00 30.57 2.43
123 124 0.259938 AAGAAGCCCATCCCCATGAC 59.740 55.000 0.00 0.00 30.57 3.06
131 132 2.291741 CCGCTAATCAAAGAAGCCCATC 59.708 50.000 0.00 0.00 32.50 3.51
133 134 1.681780 CCCGCTAATCAAAGAAGCCCA 60.682 52.381 0.00 0.00 32.50 5.36
138 139 7.455641 TTTGTAATTCCCGCTAATCAAAGAA 57.544 32.000 0.00 0.00 0.00 2.52
144 145 6.027749 CAGTGTTTTGTAATTCCCGCTAATC 58.972 40.000 0.00 0.00 0.00 1.75
151 152 8.027189 GGTCTATTTCAGTGTTTTGTAATTCCC 58.973 37.037 0.00 0.00 0.00 3.97
182 183 7.633193 ATTTAAGTGGCCATTATCGTGTAAA 57.367 32.000 9.72 5.85 0.00 2.01
185 186 5.885912 AGAATTTAAGTGGCCATTATCGTGT 59.114 36.000 9.72 0.00 0.00 4.49
186 187 6.377327 AGAATTTAAGTGGCCATTATCGTG 57.623 37.500 9.72 0.00 0.00 4.35
227 230 6.875195 CCTCGTACAGTTCCTGGTTTAAATTA 59.125 38.462 0.00 0.00 35.51 1.40
233 236 2.036862 GACCTCGTACAGTTCCTGGTTT 59.963 50.000 0.00 0.00 35.51 3.27
241 244 4.395959 TTTTCTGTGACCTCGTACAGTT 57.604 40.909 0.00 0.00 43.59 3.16
272 275 2.551032 CACACCGACCTCCCTTTAAAAC 59.449 50.000 0.00 0.00 0.00 2.43
281 284 1.955080 CTAGTATCCACACCGACCTCC 59.045 57.143 0.00 0.00 0.00 4.30
285 288 6.039047 TGAAATCTACTAGTATCCACACCGAC 59.961 42.308 2.33 0.00 0.00 4.79
323 326 1.250840 ATCGCCCAAAAGAACTGGCC 61.251 55.000 0.00 0.00 40.87 5.36
324 327 0.603065 AATCGCCCAAAAGAACTGGC 59.397 50.000 0.00 0.00 40.54 4.85
325 328 1.202348 GGAATCGCCCAAAAGAACTGG 59.798 52.381 0.00 0.00 0.00 4.00
326 329 2.636768 GGAATCGCCCAAAAGAACTG 57.363 50.000 0.00 0.00 0.00 3.16
337 340 2.854522 CGATTATGGGGGAATCGCC 58.145 57.895 7.94 7.94 46.31 5.54
340 343 0.323451 GGGGCGATTATGGGGGAATC 60.323 60.000 0.00 0.00 0.00 2.52
341 344 0.776080 AGGGGCGATTATGGGGGAAT 60.776 55.000 0.00 0.00 0.00 3.01
342 345 1.386772 AGGGGCGATTATGGGGGAA 60.387 57.895 0.00 0.00 0.00 3.97
343 346 1.846124 GAGGGGCGATTATGGGGGA 60.846 63.158 0.00 0.00 0.00 4.81
344 347 1.842381 GAGAGGGGCGATTATGGGGG 61.842 65.000 0.00 0.00 0.00 5.40
345 348 1.679898 GAGAGGGGCGATTATGGGG 59.320 63.158 0.00 0.00 0.00 4.96
346 349 1.679898 GGAGAGGGGCGATTATGGG 59.320 63.158 0.00 0.00 0.00 4.00
347 350 1.679898 GGGAGAGGGGCGATTATGG 59.320 63.158 0.00 0.00 0.00 2.74
348 351 1.127567 TGGGGAGAGGGGCGATTATG 61.128 60.000 0.00 0.00 0.00 1.90
349 352 0.838122 CTGGGGAGAGGGGCGATTAT 60.838 60.000 0.00 0.00 0.00 1.28
350 353 1.459539 CTGGGGAGAGGGGCGATTA 60.460 63.158 0.00 0.00 0.00 1.75
351 354 2.770048 CTGGGGAGAGGGGCGATT 60.770 66.667 0.00 0.00 0.00 3.34
355 358 3.803162 GAAGCTGGGGAGAGGGGC 61.803 72.222 0.00 0.00 0.00 5.80
356 359 2.041928 AGAAGCTGGGGAGAGGGG 59.958 66.667 0.00 0.00 0.00 4.79
357 360 2.069430 GGAGAAGCTGGGGAGAGGG 61.069 68.421 0.00 0.00 0.00 4.30
358 361 2.069430 GGGAGAAGCTGGGGAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
359 362 1.306482 TGGGAGAAGCTGGGGAGAG 60.306 63.158 0.00 0.00 0.00 3.20
360 363 1.306482 CTGGGAGAAGCTGGGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
361 364 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
362 365 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
363 366 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96
364 367 0.914644 TGATTCTGGGAGAAGCTGGG 59.085 55.000 3.49 0.00 40.96 4.45
365 368 3.294038 AATGATTCTGGGAGAAGCTGG 57.706 47.619 3.49 0.00 40.96 4.85
366 369 5.033589 AGTAATGATTCTGGGAGAAGCTG 57.966 43.478 3.49 0.00 40.96 4.24
367 370 5.190528 TGAAGTAATGATTCTGGGAGAAGCT 59.809 40.000 3.49 0.00 40.96 3.74
368 371 5.431765 TGAAGTAATGATTCTGGGAGAAGC 58.568 41.667 0.00 0.00 40.77 3.86
369 372 9.790344 AATATGAAGTAATGATTCTGGGAGAAG 57.210 33.333 0.00 0.00 37.69 2.85
402 405 9.214962 AGTTAAGGTCTAATTAGCTAGGATTGT 57.785 33.333 7.67 0.00 0.00 2.71
444 447 6.953520 TCCCAGAATCACCACTTCATATTTTT 59.046 34.615 0.00 0.00 0.00 1.94
445 448 6.493166 TCCCAGAATCACCACTTCATATTTT 58.507 36.000 0.00 0.00 0.00 1.82
446 449 6.069440 TCTCCCAGAATCACCACTTCATATTT 60.069 38.462 0.00 0.00 0.00 1.40
447 450 5.429762 TCTCCCAGAATCACCACTTCATATT 59.570 40.000 0.00 0.00 0.00 1.28
448 451 4.971282 TCTCCCAGAATCACCACTTCATAT 59.029 41.667 0.00 0.00 0.00 1.78
449 452 4.361783 TCTCCCAGAATCACCACTTCATA 58.638 43.478 0.00 0.00 0.00 2.15
450 453 3.184628 TCTCCCAGAATCACCACTTCAT 58.815 45.455 0.00 0.00 0.00 2.57
451 454 2.619931 TCTCCCAGAATCACCACTTCA 58.380 47.619 0.00 0.00 0.00 3.02
452 455 3.604582 CTTCTCCCAGAATCACCACTTC 58.395 50.000 0.00 0.00 33.13 3.01
453 456 2.290577 GCTTCTCCCAGAATCACCACTT 60.291 50.000 0.00 0.00 33.13 3.16
454 457 1.280421 GCTTCTCCCAGAATCACCACT 59.720 52.381 0.00 0.00 33.13 4.00
455 458 1.280421 AGCTTCTCCCAGAATCACCAC 59.720 52.381 0.00 0.00 33.13 4.16
456 459 1.280133 CAGCTTCTCCCAGAATCACCA 59.720 52.381 0.00 0.00 33.13 4.17
457 460 1.407989 CCAGCTTCTCCCAGAATCACC 60.408 57.143 0.00 0.00 33.13 4.02
458 461 1.407989 CCCAGCTTCTCCCAGAATCAC 60.408 57.143 0.00 0.00 33.13 3.06
459 462 0.914644 CCCAGCTTCTCCCAGAATCA 59.085 55.000 0.00 0.00 33.13 2.57
460 463 0.182299 CCCCAGCTTCTCCCAGAATC 59.818 60.000 0.00 0.00 33.13 2.52
461 464 0.253347 TCCCCAGCTTCTCCCAGAAT 60.253 55.000 0.00 0.00 33.13 2.40
462 465 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
463 466 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
464 467 2.373707 CCTCCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
465 468 2.285668 CCTCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
466 469 3.093172 CCCTCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
467 470 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
468 471 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
483 486 2.505405 GATTCTCCTAAAATCGCCCCC 58.495 52.381 0.00 0.00 0.00 5.40
484 487 2.143925 CGATTCTCCTAAAATCGCCCC 58.856 52.381 5.45 0.00 46.01 5.80
489 492 5.357032 TCTTTTGGGCGATTCTCCTAAAATC 59.643 40.000 14.82 0.00 41.21 2.17
490 493 5.261216 TCTTTTGGGCGATTCTCCTAAAAT 58.739 37.500 14.82 0.00 41.21 1.82
491 494 4.658063 TCTTTTGGGCGATTCTCCTAAAA 58.342 39.130 14.02 14.02 40.29 1.52
492 495 4.295141 TCTTTTGGGCGATTCTCCTAAA 57.705 40.909 0.53 0.53 33.15 1.85
493 496 3.992943 TCTTTTGGGCGATTCTCCTAA 57.007 42.857 0.00 0.00 0.00 2.69
494 497 3.263425 AGTTCTTTTGGGCGATTCTCCTA 59.737 43.478 0.00 0.00 0.00 2.94
495 498 2.040412 AGTTCTTTTGGGCGATTCTCCT 59.960 45.455 0.00 0.00 0.00 3.69
496 499 2.162408 CAGTTCTTTTGGGCGATTCTCC 59.838 50.000 0.00 0.00 0.00 3.71
497 500 2.162408 CCAGTTCTTTTGGGCGATTCTC 59.838 50.000 0.00 0.00 31.87 2.87
498 501 2.162681 CCAGTTCTTTTGGGCGATTCT 58.837 47.619 0.00 0.00 31.87 2.40
499 502 2.636768 CCAGTTCTTTTGGGCGATTC 57.363 50.000 0.00 0.00 31.87 2.52
506 509 1.165270 CTACGGCCCAGTTCTTTTGG 58.835 55.000 0.00 0.00 35.41 3.28
507 510 1.892209 ACTACGGCCCAGTTCTTTTG 58.108 50.000 0.00 0.00 0.00 2.44
508 511 3.994931 ATACTACGGCCCAGTTCTTTT 57.005 42.857 9.80 0.00 0.00 2.27
509 512 5.608449 GATTATACTACGGCCCAGTTCTTT 58.392 41.667 9.80 0.00 0.00 2.52
510 513 4.261909 CGATTATACTACGGCCCAGTTCTT 60.262 45.833 9.80 0.04 0.00 2.52
511 514 3.255149 CGATTATACTACGGCCCAGTTCT 59.745 47.826 9.80 2.04 0.00 3.01
512 515 3.254166 TCGATTATACTACGGCCCAGTTC 59.746 47.826 9.80 1.62 0.00 3.01
513 516 3.225104 TCGATTATACTACGGCCCAGTT 58.775 45.455 9.80 2.14 0.00 3.16
514 517 2.867624 TCGATTATACTACGGCCCAGT 58.132 47.619 9.48 9.48 0.00 4.00
515 518 4.451629 AATCGATTATACTACGGCCCAG 57.548 45.455 9.39 0.00 0.00 4.45
516 519 4.525487 AGAAATCGATTATACTACGGCCCA 59.475 41.667 11.83 0.00 0.00 5.36
517 520 5.069501 AGAAATCGATTATACTACGGCCC 57.930 43.478 11.83 0.00 0.00 5.80
518 521 7.311408 ACTAAGAAATCGATTATACTACGGCC 58.689 38.462 11.83 0.00 0.00 6.13
519 522 9.831737 TTACTAAGAAATCGATTATACTACGGC 57.168 33.333 11.83 0.00 0.00 5.68
551 554 9.878667 TTTGATTCGTATAACTGGATTTACTGA 57.121 29.630 0.00 0.00 0.00 3.41
552 555 9.916397 GTTTGATTCGTATAACTGGATTTACTG 57.084 33.333 0.00 0.00 0.00 2.74
554 557 8.810427 TCGTTTGATTCGTATAACTGGATTTAC 58.190 33.333 0.00 0.00 0.00 2.01
563 566 6.155691 TGTTGGTCGTTTGATTCGTATAAC 57.844 37.500 0.00 0.00 0.00 1.89
597 601 7.881775 TTTTTGGAGGATTAGAATTCCTAGC 57.118 36.000 0.65 0.00 33.37 3.42
613 617 6.523840 CAGGGAGAGATAGAGATTTTTGGAG 58.476 44.000 0.00 0.00 0.00 3.86
633 637 5.185828 AGCCTTACATTCTTTTTAAGCAGGG 59.814 40.000 0.00 0.00 0.00 4.45
635 639 9.860898 ATTAAGCCTTACATTCTTTTTAAGCAG 57.139 29.630 0.00 0.00 0.00 4.24
636 640 9.638239 CATTAAGCCTTACATTCTTTTTAAGCA 57.362 29.630 0.00 0.00 0.00 3.91
637 641 9.639601 ACATTAAGCCTTACATTCTTTTTAAGC 57.360 29.630 0.00 0.00 0.00 3.09
672 676 6.092122 GGTGATTGATTGTCATACACGAAAGA 59.908 38.462 0.00 0.00 35.36 2.52
673 677 6.092670 AGGTGATTGATTGTCATACACGAAAG 59.907 38.462 0.00 0.00 35.36 2.62
675 679 5.487433 AGGTGATTGATTGTCATACACGAA 58.513 37.500 0.00 0.00 35.36 3.85
676 680 5.084818 AGGTGATTGATTGTCATACACGA 57.915 39.130 0.00 0.00 35.36 4.35
761 766 8.630917 TCAAATCCGGTTTGTGATTTTAACTTA 58.369 29.630 21.19 3.46 45.87 2.24
765 770 9.982651 TTTATCAAATCCGGTTTGTGATTTTAA 57.017 25.926 21.19 11.40 45.87 1.52
767 772 7.928706 TGTTTATCAAATCCGGTTTGTGATTTT 59.071 29.630 21.19 7.69 45.87 1.82
773 778 9.936759 AATAAATGTTTATCAAATCCGGTTTGT 57.063 25.926 21.19 14.40 45.87 2.83
810 815 7.448469 GTGGGATTTACCTGCTCATATTAATGT 59.552 37.037 0.00 0.00 38.98 2.71
848 881 6.201517 CAATTTTGTAGGATAGGACAATGCG 58.798 40.000 0.00 0.00 35.57 4.73
984 1271 1.815866 CATCCCAATTCCGCCCAAC 59.184 57.895 0.00 0.00 0.00 3.77
1124 1418 1.070821 CAGCAGAATCACGAAGCGAA 58.929 50.000 0.00 0.00 0.00 4.70
1132 1426 2.611292 GTGACCTATGCAGCAGAATCAC 59.389 50.000 14.98 14.98 0.00 3.06
1142 1436 0.464036 GTGATCCCGTGACCTATGCA 59.536 55.000 0.00 0.00 0.00 3.96
1195 1495 5.183969 CAATCGAGCATCCATAATCCTCAT 58.816 41.667 0.00 0.00 0.00 2.90
1223 1523 5.017294 ACTGATAAAGTTGAGCTAGAGCC 57.983 43.478 0.00 0.00 37.58 4.70
1303 1603 5.728471 TGAACTTTGGTGCTTGAAATTTGA 58.272 33.333 0.00 0.00 0.00 2.69
1312 1612 3.084786 GCTCCTATGAACTTTGGTGCTT 58.915 45.455 0.00 0.00 36.51 3.91
1379 1682 7.950124 CCTTTATCACAGGGGAAAATGGTATAT 59.050 37.037 0.00 0.00 0.00 0.86
1398 1701 6.103997 TGTACTCGAAATCCACACCTTTATC 58.896 40.000 0.00 0.00 0.00 1.75
1503 1808 1.929860 ATGGTACCCTCCGACTCCGA 61.930 60.000 10.07 0.00 38.22 4.55
1504 1809 1.041447 AATGGTACCCTCCGACTCCG 61.041 60.000 10.07 0.00 0.00 4.63
1505 1810 1.138464 GAAATGGTACCCTCCGACTCC 59.862 57.143 10.07 0.00 0.00 3.85
1506 1811 2.108970 AGAAATGGTACCCTCCGACTC 58.891 52.381 10.07 0.00 0.00 3.36
1507 1812 1.831736 CAGAAATGGTACCCTCCGACT 59.168 52.381 10.07 0.00 0.00 4.18
1508 1813 1.829222 TCAGAAATGGTACCCTCCGAC 59.171 52.381 10.07 0.00 0.00 4.79
1539 1844 0.396435 ATTGACACCGGAGAACTGCA 59.604 50.000 9.46 0.00 0.00 4.41
1559 1864 5.248477 TGATACAGGAGCTTTCCTTTACACT 59.752 40.000 0.00 0.00 38.22 3.55
1609 1914 9.927081 ATTTATGTACTCAGATCCAGGAAAATT 57.073 29.630 0.00 0.00 0.00 1.82
1637 1942 7.805071 CAGAATCACAGTAACAAAAGGATCAAC 59.195 37.037 0.00 0.00 0.00 3.18
1709 2014 7.029563 GTGAAACAACATCATGAATTACTCCC 58.970 38.462 0.00 0.00 36.32 4.30
1710 2015 7.752239 CAGTGAAACAACATCATGAATTACTCC 59.248 37.037 0.00 0.00 41.43 3.85
1784 2089 2.607499 TCCACAAATGCTGGGACAAAT 58.393 42.857 0.00 0.00 38.70 2.32
1799 2104 5.130145 AGAAACAACAAAATTCCCATCCACA 59.870 36.000 0.00 0.00 0.00 4.17
1809 2114 5.737290 CGAACGAGTCAGAAACAACAAAATT 59.263 36.000 0.00 0.00 0.00 1.82
1823 2128 2.093306 AAATGATGGCGAACGAGTCA 57.907 45.000 0.00 0.00 0.00 3.41
1928 2233 7.986085 ATACTGCTCAATACAAAACAAGTCT 57.014 32.000 0.00 0.00 0.00 3.24
1930 2235 8.677300 CCATATACTGCTCAATACAAAACAAGT 58.323 33.333 0.00 0.00 0.00 3.16
1991 2296 9.920133 AAATTAAGAGCTTTCTTTTTCAGATCC 57.080 29.630 0.00 0.00 0.00 3.36
2123 2471 7.396540 ACAAGTTCCATCCAATAAACATCTC 57.603 36.000 0.00 0.00 0.00 2.75
2140 2488 9.213819 CTAAAACCGTTAACTTACAACAAGTTC 57.786 33.333 5.70 0.00 40.58 3.01
2166 2514 1.079503 GTTGGCGTCTCCATCTGTTC 58.920 55.000 0.00 0.00 46.04 3.18
2180 2528 5.193679 AGGTTCCAGATACAATTAGTTGGC 58.806 41.667 2.81 0.00 39.70 4.52
2193 2541 9.315363 CCTACATAAGTAAGATAGGTTCCAGAT 57.685 37.037 0.00 0.00 0.00 2.90
2194 2542 8.287350 ACCTACATAAGTAAGATAGGTTCCAGA 58.713 37.037 0.00 0.00 42.39 3.86
2195 2543 8.361139 CACCTACATAAGTAAGATAGGTTCCAG 58.639 40.741 0.00 0.00 42.39 3.86
2196 2544 7.201974 GCACCTACATAAGTAAGATAGGTTCCA 60.202 40.741 0.00 0.00 42.39 3.53
2197 2545 7.015389 AGCACCTACATAAGTAAGATAGGTTCC 59.985 40.741 0.00 0.00 42.39 3.62
2384 2734 5.160607 TGTCACACTATAGTTGAAAGGGG 57.839 43.478 1.56 0.00 0.00 4.79
2394 2744 8.648097 GCGTATATGGAAATTGTCACACTATAG 58.352 37.037 0.00 0.00 0.00 1.31
2409 2759 8.129496 TCATATAGAACCAAGCGTATATGGAA 57.871 34.615 0.00 0.00 39.12 3.53
2436 2786 4.142752 GCCAAGATACGAACCCTACAAAAC 60.143 45.833 0.00 0.00 0.00 2.43
2474 2824 1.205655 TGAACCATCTGAAGGCTCTCG 59.794 52.381 0.00 0.00 0.00 4.04
2607 2958 2.408271 TCAGACCAACATGGATGCTC 57.592 50.000 2.85 0.00 40.96 4.26
2637 2988 7.851822 TTCTCAATCGCTGAAACAAAATTAC 57.148 32.000 0.00 0.00 32.17 1.89
2704 3055 1.805428 AAGCGCACACCATTTGGACC 61.805 55.000 11.47 0.00 38.94 4.46
2732 3083 4.568072 AAAAGAACAAAGCCTGGGTTTT 57.432 36.364 20.48 8.15 30.52 2.43
2764 3115 5.012768 ACACTCTTATATTATGGAACGGGGG 59.987 44.000 0.00 0.00 0.00 5.40
2765 3116 6.110411 ACACTCTTATATTATGGAACGGGG 57.890 41.667 0.00 0.00 0.00 5.73
2766 3117 8.446599 AAAACACTCTTATATTATGGAACGGG 57.553 34.615 0.00 0.00 0.00 5.28
2767 3118 9.716507 CAAAAACACTCTTATATTATGGAACGG 57.283 33.333 0.00 0.00 0.00 4.44
2786 3137 4.513442 ACTCTAGTGCAGTGTCAAAAACA 58.487 39.130 3.69 0.00 34.78 2.83
2787 3138 6.787085 ATACTCTAGTGCAGTGTCAAAAAC 57.213 37.500 3.69 0.00 33.19 2.43
2788 3139 8.896320 TTTATACTCTAGTGCAGTGTCAAAAA 57.104 30.769 3.69 0.00 33.19 1.94
2789 3140 8.770828 GTTTTATACTCTAGTGCAGTGTCAAAA 58.229 33.333 3.69 2.39 33.19 2.44
2790 3141 7.115805 CGTTTTATACTCTAGTGCAGTGTCAAA 59.884 37.037 3.69 0.00 33.19 2.69
2791 3142 6.584942 CGTTTTATACTCTAGTGCAGTGTCAA 59.415 38.462 3.69 0.00 33.19 3.18
2792 3143 6.090783 CGTTTTATACTCTAGTGCAGTGTCA 58.909 40.000 3.69 0.00 33.19 3.58
2793 3144 5.004535 GCGTTTTATACTCTAGTGCAGTGTC 59.995 44.000 3.69 0.00 33.19 3.67
2794 3145 4.863131 GCGTTTTATACTCTAGTGCAGTGT 59.137 41.667 3.69 0.00 35.26 3.55
2795 3146 5.004821 CAGCGTTTTATACTCTAGTGCAGTG 59.995 44.000 3.69 0.00 0.00 3.66
2796 3147 5.103000 CAGCGTTTTATACTCTAGTGCAGT 58.897 41.667 0.00 0.00 0.00 4.40
2797 3148 5.103000 ACAGCGTTTTATACTCTAGTGCAG 58.897 41.667 0.00 0.00 0.00 4.41
2798 3149 5.068234 ACAGCGTTTTATACTCTAGTGCA 57.932 39.130 0.00 0.00 0.00 4.57
2799 3150 7.695869 ATAACAGCGTTTTATACTCTAGTGC 57.304 36.000 0.00 0.00 0.00 4.40
2808 3159 9.142515 CGTCCCATAATATAACAGCGTTTTATA 57.857 33.333 0.00 0.00 0.00 0.98
2809 3160 7.118680 CCGTCCCATAATATAACAGCGTTTTAT 59.881 37.037 0.00 0.39 0.00 1.40
2810 3161 6.424509 CCGTCCCATAATATAACAGCGTTTTA 59.575 38.462 0.00 0.00 0.00 1.52
2811 3162 5.237779 CCGTCCCATAATATAACAGCGTTTT 59.762 40.000 0.00 0.00 0.00 2.43
2812 3163 4.753107 CCGTCCCATAATATAACAGCGTTT 59.247 41.667 0.00 0.00 0.00 3.60
2813 3164 4.039488 TCCGTCCCATAATATAACAGCGTT 59.961 41.667 0.02 0.02 0.00 4.84
2814 3165 3.575256 TCCGTCCCATAATATAACAGCGT 59.425 43.478 0.00 0.00 0.00 5.07
2815 3166 4.174009 CTCCGTCCCATAATATAACAGCG 58.826 47.826 0.00 0.00 0.00 5.18
2816 3167 4.504858 CCTCCGTCCCATAATATAACAGC 58.495 47.826 0.00 0.00 0.00 4.40
2817 3168 4.775780 TCCCTCCGTCCCATAATATAACAG 59.224 45.833 0.00 0.00 0.00 3.16
2818 3169 4.754311 TCCCTCCGTCCCATAATATAACA 58.246 43.478 0.00 0.00 0.00 2.41
2819 3170 4.776308 ACTCCCTCCGTCCCATAATATAAC 59.224 45.833 0.00 0.00 0.00 1.89
2820 3171 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2821 3172 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2822 3173 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2823 3174 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2824 3175 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2825 3176 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2826 3177 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2827 3178 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2828 3179 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2829 3180 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
2830 3181 2.361643 ATGTACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
2831 3182 6.404513 GCATATTATGTACTACTCCCTCCGTC 60.405 46.154 5.60 0.00 0.00 4.79
2832 3183 5.418209 GCATATTATGTACTACTCCCTCCGT 59.582 44.000 5.60 0.00 0.00 4.69
2833 3184 5.652891 AGCATATTATGTACTACTCCCTCCG 59.347 44.000 5.60 0.00 0.00 4.63
2834 3185 6.127310 CCAGCATATTATGTACTACTCCCTCC 60.127 46.154 5.60 0.00 0.00 4.30
2835 3186 6.437793 ACCAGCATATTATGTACTACTCCCTC 59.562 42.308 5.60 0.00 0.00 4.30
2836 3187 6.323737 ACCAGCATATTATGTACTACTCCCT 58.676 40.000 5.60 0.00 0.00 4.20
2837 3188 6.210784 TGACCAGCATATTATGTACTACTCCC 59.789 42.308 5.60 0.00 0.00 4.30
2838 3189 7.091443 GTGACCAGCATATTATGTACTACTCC 58.909 42.308 5.60 0.00 0.00 3.85
2839 3190 7.658261 TGTGACCAGCATATTATGTACTACTC 58.342 38.462 5.60 0.00 0.00 2.59
2840 3191 7.287927 ACTGTGACCAGCATATTATGTACTACT 59.712 37.037 5.60 0.00 42.81 2.57
2841 3192 7.382488 CACTGTGACCAGCATATTATGTACTAC 59.618 40.741 0.32 0.16 42.81 2.73
2874 3225 4.179926 TGTAAGTAGAGCACTTCAGCAG 57.820 45.455 0.00 0.00 44.48 4.24
2914 3265 6.868622 AGAACCTACTTAGCTGATGTTACAG 58.131 40.000 0.00 0.00 40.43 2.74
2948 3299 1.402968 CATCGGCCTGAAAATGACCAG 59.597 52.381 0.00 0.00 0.00 4.00
2952 3303 2.198827 ACACATCGGCCTGAAAATGA 57.801 45.000 0.00 0.00 0.00 2.57
2964 3315 0.179174 GGGGCGCTAAAAACACATCG 60.179 55.000 7.64 0.00 0.00 3.84
3030 3381 9.440761 AACAGAGATCTTAGAATAGGGTAACAT 57.559 33.333 0.00 0.00 39.74 2.71
3048 3399 2.763448 GGGAGTACTCAGCAACAGAGAT 59.237 50.000 23.91 0.00 36.91 2.75
3065 3416 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
3066 3417 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
3067 3418 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
3068 3419 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
3069 3420 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
3070 3421 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
3071 3422 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
3100 3451 6.510536 AGAGCGTTTTTAACACTAGTGTAGT 58.489 36.000 28.13 16.41 44.13 2.73
3101 3452 7.404139 AAGAGCGTTTTTAACACTAGTGTAG 57.596 36.000 28.13 14.03 44.13 2.74
3114 3465 8.620416 TGCATGTCATAATATAAGAGCGTTTTT 58.380 29.630 0.00 0.00 0.00 1.94
3115 3466 8.153479 TGCATGTCATAATATAAGAGCGTTTT 57.847 30.769 0.00 0.00 0.00 2.43
3116 3467 7.728847 TGCATGTCATAATATAAGAGCGTTT 57.271 32.000 0.00 0.00 0.00 3.60
3117 3468 7.728847 TTGCATGTCATAATATAAGAGCGTT 57.271 32.000 0.00 0.00 0.00 4.84
3118 3469 7.728847 TTTGCATGTCATAATATAAGAGCGT 57.271 32.000 0.00 0.00 0.00 5.07
3119 3470 8.232513 ACATTTGCATGTCATAATATAAGAGCG 58.767 33.333 0.00 0.00 39.69 5.03
3120 3471 9.338291 CACATTTGCATGTCATAATATAAGAGC 57.662 33.333 0.00 0.00 42.14 4.09
3127 3478 9.518906 GACATTTCACATTTGCATGTCATAATA 57.481 29.630 14.46 0.00 42.14 0.98
3128 3479 8.255206 AGACATTTCACATTTGCATGTCATAAT 58.745 29.630 18.62 0.00 42.14 1.28
3129 3480 7.604549 AGACATTTCACATTTGCATGTCATAA 58.395 30.769 18.62 0.00 42.14 1.90
3227 3579 2.996631 AGTATCTTGAAGCCTTGCCAG 58.003 47.619 0.00 0.00 0.00 4.85
3286 3638 1.272147 GGAGGAGCATCTGGTTGGTTT 60.272 52.381 0.00 0.00 33.73 3.27
3396 3748 1.029947 CCGGGGGTCTTTGCATACAC 61.030 60.000 0.00 0.00 0.00 2.90
3401 3753 2.196997 CTCATCCGGGGGTCTTTGCA 62.197 60.000 0.00 0.00 0.00 4.08
3413 3765 1.325640 CAACATCGTCAAGCTCATCCG 59.674 52.381 0.00 0.00 0.00 4.18
3537 3889 5.426689 TGATGTCTCTTTCAGCTTACCAT 57.573 39.130 0.00 0.00 0.00 3.55
3540 3892 5.645497 ACCAATGATGTCTCTTTCAGCTTAC 59.355 40.000 0.00 0.00 0.00 2.34
3546 3898 9.685276 ATATGTTAACCAATGATGTCTCTTTCA 57.315 29.630 2.48 0.00 0.00 2.69
4011 4384 0.666577 AGAAGAACCGAACCGAAGCG 60.667 55.000 0.00 0.00 0.00 4.68
4017 4390 6.496338 AACATAATCAAGAAGAACCGAACC 57.504 37.500 0.00 0.00 0.00 3.62
4176 4552 9.645059 AATTATGATAGTCATCTACATGTTCGG 57.355 33.333 2.30 0.00 38.26 4.30
4265 4641 8.871629 ACTAAAACAAAGGGAAAACCAAAAAT 57.128 26.923 0.00 0.00 43.89 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.