Multiple sequence alignment - TraesCS5B01G303100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G303100 chr5B 100.000 5962 0 0 890 6851 487603206 487597245 0.000000e+00 11010.0
1 TraesCS5B01G303100 chr5B 100.000 480 0 0 1 480 487604095 487603616 0.000000e+00 887.0
2 TraesCS5B01G303100 chr5A 92.622 3578 173 32 895 4402 512229572 512226016 0.000000e+00 5060.0
3 TraesCS5B01G303100 chr5A 96.341 1667 50 9 4573 6232 512225726 512224064 0.000000e+00 2730.0
4 TraesCS5B01G303100 chr5A 86.835 395 26 13 93 480 512229959 512229584 1.060000e-112 418.0
5 TraesCS5B01G303100 chr5A 97.917 48 1 0 4529 4576 512226029 512225982 4.400000e-12 84.2
6 TraesCS5B01G303100 chr5D 93.889 2340 105 25 4527 6851 406587765 406585449 0.000000e+00 3494.0
7 TraesCS5B01G303100 chr5D 93.731 2010 85 14 893 2868 406591210 406589208 0.000000e+00 2976.0
8 TraesCS5B01G303100 chr5D 87.709 895 62 13 3515 4400 406588607 406587752 0.000000e+00 1000.0
9 TraesCS5B01G303100 chr5D 89.439 606 36 7 2908 3486 406589207 406588603 0.000000e+00 739.0
10 TraesCS5B01G303100 chr5D 88.064 377 24 8 93 459 406591874 406591509 1.770000e-115 427.0
11 TraesCS5B01G303100 chr5D 97.727 132 2 1 4404 4535 469490328 469490198 6.910000e-55 226.0
12 TraesCS5B01G303100 chr4A 98.473 131 1 1 4404 4534 497887416 497887545 5.340000e-56 230.0
13 TraesCS5B01G303100 chr7B 97.744 133 1 2 4399 4530 69848429 69848560 1.920000e-55 228.0
14 TraesCS5B01G303100 chr1B 97.744 133 1 1 4404 4534 438170931 438171063 1.920000e-55 228.0
15 TraesCS5B01G303100 chr3A 96.324 136 5 0 4404 4539 482974422 482974287 2.490000e-54 224.0
16 TraesCS5B01G303100 chr4D 95.070 142 5 2 4404 4544 306779171 306779031 8.940000e-54 222.0
17 TraesCS5B01G303100 chr4D 98.400 125 2 0 4404 4528 220345089 220344965 3.220000e-53 220.0
18 TraesCS5B01G303100 chr3B 93.793 145 7 2 4404 4547 627207149 627207006 4.160000e-52 217.0
19 TraesCS5B01G303100 chr2D 91.824 159 8 4 4369 4526 243656161 243656315 4.160000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G303100 chr5B 487597245 487604095 6850 True 5948.50 11010 100.00000 1 6851 2 chr5B.!!$R1 6850
1 TraesCS5B01G303100 chr5A 512224064 512229959 5895 True 2073.05 5060 93.42875 93 6232 4 chr5A.!!$R1 6139
2 TraesCS5B01G303100 chr5D 406585449 406591874 6425 True 1727.20 3494 90.56640 93 6851 5 chr5D.!!$R2 6758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.464373 CGTACATGAGCCCCTGCATT 60.464 55.000 0.0 0.0 41.13 3.56 F
456 469 0.627451 TCGCTTCTCCCCCACTACTA 59.373 55.000 0.0 0.0 0.00 1.82 F
457 470 0.745468 CGCTTCTCCCCCACTACTAC 59.255 60.000 0.0 0.0 0.00 2.73 F
1581 1615 1.146263 GGTTATGCCCCTGAGGACG 59.854 63.158 0.0 0.0 38.24 4.79 F
2385 2430 0.100325 TTCGCCACAAACAAGCACAG 59.900 50.000 0.0 0.0 0.00 3.66 F
2971 3042 0.235926 GCTTGTCGTTGACCTTGAGC 59.764 55.000 0.0 0.0 0.00 4.26 F
3692 3792 0.040058 TGGCCCAAGTTCAGATGCAT 59.960 50.000 0.0 0.0 0.00 3.96 F
4495 4622 0.036306 AGCCTACCCCGACTTGTTTG 59.964 55.000 0.0 0.0 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 1488 0.738389 AAAACAACACGTCCAGCAGG 59.262 50.000 0.00 0.0 0.00 4.85 R
1566 1600 0.832135 GGATCGTCCTCAGGGGCATA 60.832 60.000 0.00 0.0 36.96 3.14 R
1925 1960 0.945743 CTGCTAGCAACAGCACGTGA 60.946 55.000 22.23 0.0 46.41 4.35 R
3356 3446 0.243636 GCAAATGTACCTGGGTGCAC 59.756 55.000 8.80 8.8 42.96 4.57 R
3460 3558 0.667184 GGCACGAAATTGGCAGGTTG 60.667 55.000 0.00 0.0 41.65 3.77 R
4476 4603 0.036306 CAAACAAGTCGGGGTAGGCT 59.964 55.000 0.00 0.0 0.00 4.58 R
5299 5688 1.881973 GAAGCAAGGACAGATGCACAA 59.118 47.619 0.00 0.0 44.95 3.33 R
5880 6271 1.275291 TCGAAGAGATGGTTGGGTCAC 59.725 52.381 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.705609 AAAAAGGACACGATATGCTTGTT 57.294 34.783 0.00 0.00 0.00 2.83
34 35 5.705609 AAAAGGACACGATATGCTTGTTT 57.294 34.783 0.00 0.00 0.00 2.83
35 36 4.685169 AAGGACACGATATGCTTGTTTG 57.315 40.909 0.00 0.00 0.00 2.93
36 37 3.674997 AGGACACGATATGCTTGTTTGT 58.325 40.909 0.00 0.00 0.00 2.83
37 38 4.827692 AGGACACGATATGCTTGTTTGTA 58.172 39.130 0.00 0.00 0.00 2.41
38 39 5.428253 AGGACACGATATGCTTGTTTGTAT 58.572 37.500 0.00 0.00 0.00 2.29
39 40 5.880332 AGGACACGATATGCTTGTTTGTATT 59.120 36.000 0.00 0.00 0.00 1.89
40 41 5.965334 GGACACGATATGCTTGTTTGTATTG 59.035 40.000 0.00 0.00 0.00 1.90
41 42 6.183360 GGACACGATATGCTTGTTTGTATTGA 60.183 38.462 0.00 0.00 0.00 2.57
42 43 7.320443 ACACGATATGCTTGTTTGTATTGAT 57.680 32.000 0.00 0.00 0.00 2.57
43 44 8.432110 ACACGATATGCTTGTTTGTATTGATA 57.568 30.769 0.00 0.00 0.00 2.15
44 45 8.551205 ACACGATATGCTTGTTTGTATTGATAG 58.449 33.333 0.00 0.00 0.00 2.08
45 46 8.011673 CACGATATGCTTGTTTGTATTGATAGG 58.988 37.037 0.00 0.00 0.00 2.57
46 47 7.173218 ACGATATGCTTGTTTGTATTGATAGGG 59.827 37.037 0.00 0.00 0.00 3.53
47 48 7.173218 CGATATGCTTGTTTGTATTGATAGGGT 59.827 37.037 0.00 0.00 0.00 4.34
48 49 5.895636 TGCTTGTTTGTATTGATAGGGTG 57.104 39.130 0.00 0.00 0.00 4.61
49 50 5.321102 TGCTTGTTTGTATTGATAGGGTGT 58.679 37.500 0.00 0.00 0.00 4.16
50 51 6.477253 TGCTTGTTTGTATTGATAGGGTGTA 58.523 36.000 0.00 0.00 0.00 2.90
51 52 6.597672 TGCTTGTTTGTATTGATAGGGTGTAG 59.402 38.462 0.00 0.00 0.00 2.74
52 53 6.038271 GCTTGTTTGTATTGATAGGGTGTAGG 59.962 42.308 0.00 0.00 0.00 3.18
53 54 6.877668 TGTTTGTATTGATAGGGTGTAGGA 57.122 37.500 0.00 0.00 0.00 2.94
54 55 6.884832 TGTTTGTATTGATAGGGTGTAGGAG 58.115 40.000 0.00 0.00 0.00 3.69
55 56 6.442564 TGTTTGTATTGATAGGGTGTAGGAGT 59.557 38.462 0.00 0.00 0.00 3.85
56 57 7.620491 TGTTTGTATTGATAGGGTGTAGGAGTA 59.380 37.037 0.00 0.00 0.00 2.59
57 58 7.592885 TTGTATTGATAGGGTGTAGGAGTAC 57.407 40.000 0.00 0.00 0.00 2.73
58 59 6.675565 TGTATTGATAGGGTGTAGGAGTACA 58.324 40.000 0.00 0.00 36.78 2.90
59 60 7.302948 TGTATTGATAGGGTGTAGGAGTACAT 58.697 38.462 0.00 0.00 41.29 2.29
60 61 6.672266 ATTGATAGGGTGTAGGAGTACATG 57.328 41.667 0.00 0.00 41.29 3.21
61 62 3.895656 TGATAGGGTGTAGGAGTACATGC 59.104 47.826 0.00 0.00 41.29 4.06
62 63 1.112113 AGGGTGTAGGAGTACATGCG 58.888 55.000 0.00 0.00 41.29 4.73
63 64 0.822164 GGGTGTAGGAGTACATGCGT 59.178 55.000 0.00 0.00 41.29 5.24
64 65 2.026641 GGGTGTAGGAGTACATGCGTA 58.973 52.381 0.00 0.00 41.29 4.42
75 76 3.647367 ATGCGTACATGAGCCCCT 58.353 55.556 0.00 0.00 34.35 4.79
76 77 1.146930 ATGCGTACATGAGCCCCTG 59.853 57.895 0.00 0.00 34.35 4.45
77 78 2.897350 GCGTACATGAGCCCCTGC 60.897 66.667 0.00 0.00 37.95 4.85
78 79 2.584064 CGTACATGAGCCCCTGCA 59.416 61.111 0.00 0.00 41.13 4.41
79 80 1.146930 CGTACATGAGCCCCTGCAT 59.853 57.895 0.00 0.00 41.13 3.96
80 81 0.464373 CGTACATGAGCCCCTGCATT 60.464 55.000 0.00 0.00 41.13 3.56
81 82 1.767759 GTACATGAGCCCCTGCATTT 58.232 50.000 0.00 0.00 41.13 2.32
82 83 2.744823 CGTACATGAGCCCCTGCATTTA 60.745 50.000 0.00 0.00 41.13 1.40
83 84 2.761786 ACATGAGCCCCTGCATTTAT 57.238 45.000 0.00 0.00 41.13 1.40
84 85 3.882102 ACATGAGCCCCTGCATTTATA 57.118 42.857 0.00 0.00 41.13 0.98
85 86 3.490348 ACATGAGCCCCTGCATTTATAC 58.510 45.455 0.00 0.00 41.13 1.47
86 87 2.656947 TGAGCCCCTGCATTTATACC 57.343 50.000 0.00 0.00 41.13 2.73
87 88 1.202758 TGAGCCCCTGCATTTATACCG 60.203 52.381 0.00 0.00 41.13 4.02
88 89 0.843984 AGCCCCTGCATTTATACCGT 59.156 50.000 0.00 0.00 41.13 4.83
89 90 0.951558 GCCCCTGCATTTATACCGTG 59.048 55.000 0.00 0.00 37.47 4.94
90 91 1.749286 GCCCCTGCATTTATACCGTGT 60.749 52.381 0.00 0.00 37.47 4.49
91 92 2.218603 CCCCTGCATTTATACCGTGTC 58.781 52.381 0.00 0.00 0.00 3.67
137 138 3.081804 CAGACGGTGCCTAAAATTTCCT 58.918 45.455 0.00 0.00 0.00 3.36
149 150 6.741240 GCCTAAAATTTCCTCTGCCAGAAAAA 60.741 38.462 0.00 0.16 35.72 1.94
174 175 2.468532 AGCAAACTTTCGTGTTTCCG 57.531 45.000 0.00 0.00 37.98 4.30
175 176 0.843872 GCAAACTTTCGTGTTTCCGC 59.156 50.000 0.00 0.00 37.98 5.54
369 374 2.284258 AGCAGAGACTCCCCGCTT 60.284 61.111 0.00 0.00 0.00 4.68
370 375 2.125350 GCAGAGACTCCCCGCTTG 60.125 66.667 0.00 0.00 0.00 4.01
372 377 2.284258 AGAGACTCCCCGCTTGCT 60.284 61.111 0.00 0.00 0.00 3.91
373 378 1.915769 AGAGACTCCCCGCTTGCTT 60.916 57.895 0.00 0.00 0.00 3.91
454 467 1.677637 CCTCGCTTCTCCCCCACTAC 61.678 65.000 0.00 0.00 0.00 2.73
455 468 0.684805 CTCGCTTCTCCCCCACTACT 60.685 60.000 0.00 0.00 0.00 2.57
456 469 0.627451 TCGCTTCTCCCCCACTACTA 59.373 55.000 0.00 0.00 0.00 1.82
457 470 0.745468 CGCTTCTCCCCCACTACTAC 59.255 60.000 0.00 0.00 0.00 2.73
458 471 1.685491 CGCTTCTCCCCCACTACTACT 60.685 57.143 0.00 0.00 0.00 2.57
1093 1121 3.773154 GGCTCCCTCCCCCTCTCT 61.773 72.222 0.00 0.00 0.00 3.10
1094 1122 2.445654 GCTCCCTCCCCCTCTCTG 60.446 72.222 0.00 0.00 0.00 3.35
1095 1123 3.114390 CTCCCTCCCCCTCTCTGT 58.886 66.667 0.00 0.00 0.00 3.41
1328 1356 4.082949 CCCTGTTTCCACCTAATTTCGTTC 60.083 45.833 0.00 0.00 0.00 3.95
1399 1433 2.525124 TTGGTGTGGGCGATCTGGT 61.525 57.895 0.00 0.00 0.00 4.00
1401 1435 1.195442 TGGTGTGGGCGATCTGGTTA 61.195 55.000 0.00 0.00 0.00 2.85
1581 1615 1.146263 GGTTATGCCCCTGAGGACG 59.854 63.158 0.00 0.00 38.24 4.79
1735 1770 4.067896 CCATTTCAGTCAACTGCTACTGT 58.932 43.478 5.25 0.00 42.96 3.55
1771 1806 7.658179 ACTGTTGTATAGATGTTTGTCTGTG 57.342 36.000 0.00 0.00 0.00 3.66
1773 1808 7.600375 ACTGTTGTATAGATGTTTGTCTGTGAG 59.400 37.037 0.00 0.00 0.00 3.51
1774 1809 6.873605 TGTTGTATAGATGTTTGTCTGTGAGG 59.126 38.462 0.00 0.00 0.00 3.86
1775 1810 6.605471 TGTATAGATGTTTGTCTGTGAGGT 57.395 37.500 0.00 0.00 0.00 3.85
1782 1817 6.483640 AGATGTTTGTCTGTGAGGTTAACTTC 59.516 38.462 10.63 10.63 0.00 3.01
1911 1946 6.049790 GGGACTAGTCATAACCATTTCTGAC 58.950 44.000 23.91 1.06 38.51 3.51
1925 1960 5.180117 CCATTTCTGACGAGTTTCTCACAAT 59.820 40.000 0.00 0.00 0.00 2.71
2008 2044 4.813296 ATGGTTCACGTCTCTGAAAAAC 57.187 40.909 0.00 0.00 31.90 2.43
2029 2065 5.606348 ACGCTTCCTCATATTCTTCTTCT 57.394 39.130 0.00 0.00 0.00 2.85
2101 2140 6.190587 TCTCTACCTTTACCTAACTACCACC 58.809 44.000 0.00 0.00 0.00 4.61
2190 2229 5.009410 CCAGATGATGGCCATTTCTCTTTAC 59.991 44.000 21.84 3.83 43.83 2.01
2200 2239 6.450545 GCCATTTCTCTTTACTTTGCTCTTT 58.549 36.000 0.00 0.00 0.00 2.52
2325 2365 5.243954 ACATGCCTTTTCTTTTAAGAGGGAC 59.756 40.000 0.00 5.11 36.22 4.46
2333 2373 5.359194 TCTTTTAAGAGGGACTAGCATGG 57.641 43.478 0.00 0.00 41.55 3.66
2381 2426 3.337398 TTGTTCGCCACAAACAAGC 57.663 47.368 0.00 0.00 42.76 4.01
2382 2427 0.528017 TTGTTCGCCACAAACAAGCA 59.472 45.000 0.00 0.00 42.76 3.91
2383 2428 0.179150 TGTTCGCCACAAACAAGCAC 60.179 50.000 0.00 0.00 33.86 4.40
2384 2429 0.179150 GTTCGCCACAAACAAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
2385 2430 0.100325 TTCGCCACAAACAAGCACAG 59.900 50.000 0.00 0.00 0.00 3.66
2748 2817 2.952310 ACTGCCTCCTTTGTTGTTTCTC 59.048 45.455 0.00 0.00 0.00 2.87
2751 2820 2.224314 GCCTCCTTTGTTGTTTCTCTCG 59.776 50.000 0.00 0.00 0.00 4.04
2757 2826 5.054477 CCTTTGTTGTTTCTCTCGTCCTTA 58.946 41.667 0.00 0.00 0.00 2.69
2777 2846 9.099454 GTCCTTATTATTGTTTAGAGACTGTGG 57.901 37.037 0.00 0.00 0.00 4.17
2861 2932 6.494893 TCAACATTTTGCTGTACCAGATAC 57.505 37.500 0.00 0.00 32.44 2.24
2959 3030 3.250762 TCAGTTCTTGAAATGGCTTGTCG 59.749 43.478 10.27 0.00 31.34 4.35
2971 3042 0.235926 GCTTGTCGTTGACCTTGAGC 59.764 55.000 0.00 0.00 0.00 4.26
2984 3055 4.451096 TGACCTTGAGCGTAAATTGTTCTC 59.549 41.667 0.00 0.00 0.00 2.87
3078 3166 2.560504 CTTGCCATTATGTGTCCGCTA 58.439 47.619 0.00 0.00 0.00 4.26
3093 3181 1.680522 CGCTAGATGCCCCTGTCACT 61.681 60.000 0.00 0.00 38.78 3.41
3105 3193 2.559668 CCCTGTCACTGCAAACATCATT 59.440 45.455 0.00 0.00 0.00 2.57
3107 3195 3.571571 CTGTCACTGCAAACATCATTGG 58.428 45.455 0.00 0.00 0.00 3.16
3316 3406 6.255453 GTGTGTAACTGCAAATTTCATTGTGT 59.745 34.615 0.00 0.00 38.04 3.72
3356 3446 4.074970 ACAGGTGGCTAGTGAAGATTTTG 58.925 43.478 0.00 0.00 0.00 2.44
3368 3458 2.969821 AGATTTTGTGCACCCAGGTA 57.030 45.000 15.69 0.00 0.00 3.08
3416 3514 9.654417 CAAAAATTGCAATAAAAAGTTCTCAGG 57.346 29.630 13.39 0.00 0.00 3.86
3460 3558 1.133025 CGCCTTGTGGGATGAAATGTC 59.867 52.381 0.00 0.00 37.23 3.06
3498 3596 2.949644 GCCAAAGACTACCACTTGTGTT 59.050 45.455 0.00 0.00 0.00 3.32
3500 3598 3.564225 CCAAAGACTACCACTTGTGTTCC 59.436 47.826 0.00 0.00 0.00 3.62
3509 3607 1.939934 CACTTGTGTTCCGAGCAAGAA 59.060 47.619 10.01 0.00 41.31 2.52
3539 3637 3.330701 ACAGGAAGGTCCAAAATAGCAGA 59.669 43.478 0.00 0.00 39.61 4.26
3593 3691 7.912250 GCTGAGAACAGTAATATTGGTGATTTG 59.088 37.037 0.00 0.00 45.04 2.32
3686 3786 4.220382 TGTGATTTATTGGCCCAAGTTCAG 59.780 41.667 1.16 0.00 0.00 3.02
3692 3792 0.040058 TGGCCCAAGTTCAGATGCAT 59.960 50.000 0.00 0.00 0.00 3.96
3693 3793 0.743097 GGCCCAAGTTCAGATGCATC 59.257 55.000 19.37 19.37 0.00 3.91
3694 3794 1.684248 GGCCCAAGTTCAGATGCATCT 60.684 52.381 23.75 23.75 37.72 2.90
3707 3807 0.178767 TGCATCTTCTGGGGTCATCG 59.821 55.000 0.00 0.00 0.00 3.84
3736 3836 2.025981 TCGCCACTAGGAGTACCACTTA 60.026 50.000 0.00 0.00 38.94 2.24
3737 3837 2.358267 CGCCACTAGGAGTACCACTTAG 59.642 54.545 0.00 0.00 38.94 2.18
3738 3838 2.694109 GCCACTAGGAGTACCACTTAGG 59.306 54.545 10.09 0.00 39.79 2.69
3763 3883 9.123902 GGAAAAACTAGGAGTACCACTTAAAAA 57.876 33.333 0.00 0.00 38.94 1.94
3830 3950 7.871463 TCTCTTGTGCTCATGTAATATCATCTG 59.129 37.037 0.00 0.00 0.00 2.90
3876 3996 4.100279 TCAGAGTCCAGAAGTAGTGACA 57.900 45.455 0.00 0.00 0.00 3.58
3880 4000 2.894126 AGTCCAGAAGTAGTGACACTGG 59.106 50.000 18.58 10.38 45.56 4.00
3968 4091 5.048504 GTGTTCCTGGACATGCATATTATGG 60.049 44.000 0.00 0.00 0.00 2.74
3976 4099 6.768381 TGGACATGCATATTATGGTCGTTTAA 59.232 34.615 0.00 0.00 0.00 1.52
4082 4205 3.328931 TCCCTGGATCTGGAGCAATATTC 59.671 47.826 0.00 0.00 0.00 1.75
4270 4396 7.618019 TCCCTAGATGTCTGTAATAATGCTT 57.382 36.000 0.00 0.00 0.00 3.91
4284 4410 1.831580 ATGCTTCTTCCTTGCCAGTC 58.168 50.000 0.00 0.00 0.00 3.51
4332 4459 7.116948 GGAACTTACGGTTAAAGAACTCCTAAC 59.883 40.741 0.00 0.00 38.41 2.34
4401 4528 6.919775 AACTGAACTACTAGAACCATGACT 57.080 37.500 0.00 0.00 0.00 3.41
4402 4529 6.919775 ACTGAACTACTAGAACCATGACTT 57.080 37.500 0.00 0.00 0.00 3.01
4403 4530 6.692486 ACTGAACTACTAGAACCATGACTTG 58.308 40.000 0.00 0.00 0.00 3.16
4411 4538 2.034066 CCATGACTTGGGGTGCGT 59.966 61.111 0.00 0.00 42.33 5.24
4412 4539 2.334946 CCATGACTTGGGGTGCGTG 61.335 63.158 0.00 0.00 42.33 5.34
4413 4540 2.034066 ATGACTTGGGGTGCGTGG 59.966 61.111 0.00 0.00 0.00 4.94
4414 4541 2.525124 ATGACTTGGGGTGCGTGGA 61.525 57.895 0.00 0.00 0.00 4.02
4415 4542 2.063015 ATGACTTGGGGTGCGTGGAA 62.063 55.000 0.00 0.00 0.00 3.53
4416 4543 1.966451 GACTTGGGGTGCGTGGAAG 60.966 63.158 0.00 0.00 0.00 3.46
4417 4544 3.365265 CTTGGGGTGCGTGGAAGC 61.365 66.667 0.00 0.00 37.71 3.86
4418 4545 3.850098 CTTGGGGTGCGTGGAAGCT 62.850 63.158 0.00 0.00 38.13 3.74
4419 4546 3.429372 TTGGGGTGCGTGGAAGCTT 62.429 57.895 0.00 0.00 38.13 3.74
4420 4547 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
4421 4548 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
4422 4549 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
4423 4550 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
4424 4551 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
4425 4552 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
4426 4553 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
4427 4554 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
4428 4555 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
4429 4556 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
4430 4557 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
4431 4558 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
4432 4559 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4433 4560 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4434 4561 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4435 4562 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4436 4563 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4437 4564 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4438 4565 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4439 4566 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4440 4567 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4441 4568 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4442 4569 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4443 4570 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4444 4571 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4445 4572 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4446 4573 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4447 4574 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4456 4583 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
4457 4584 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
4458 4585 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
4459 4586 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
4460 4587 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
4461 4588 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
4462 4589 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
4463 4590 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
4464 4591 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
4465 4592 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
4466 4593 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
4467 4594 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
4468 4595 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
4469 4596 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
4470 4597 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
4471 4598 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
4472 4599 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4473 4600 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4474 4601 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4475 4602 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4476 4603 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4477 4604 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4478 4605 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4479 4606 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4480 4607 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4481 4608 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4482 4609 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4483 4610 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4484 4611 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4485 4612 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4486 4613 0.396695 TTCACCTCTAGCCTACCCCG 60.397 60.000 0.00 0.00 0.00 5.73
4487 4614 1.229359 CACCTCTAGCCTACCCCGA 59.771 63.158 0.00 0.00 0.00 5.14
4488 4615 1.108132 CACCTCTAGCCTACCCCGAC 61.108 65.000 0.00 0.00 0.00 4.79
4489 4616 1.287773 ACCTCTAGCCTACCCCGACT 61.288 60.000 0.00 0.00 0.00 4.18
4490 4617 0.106116 CCTCTAGCCTACCCCGACTT 60.106 60.000 0.00 0.00 0.00 3.01
4491 4618 1.033574 CTCTAGCCTACCCCGACTTG 58.966 60.000 0.00 0.00 0.00 3.16
4492 4619 0.333993 TCTAGCCTACCCCGACTTGT 59.666 55.000 0.00 0.00 0.00 3.16
4493 4620 1.192428 CTAGCCTACCCCGACTTGTT 58.808 55.000 0.00 0.00 0.00 2.83
4494 4621 1.553704 CTAGCCTACCCCGACTTGTTT 59.446 52.381 0.00 0.00 0.00 2.83
4495 4622 0.036306 AGCCTACCCCGACTTGTTTG 59.964 55.000 0.00 0.00 0.00 2.93
4496 4623 0.958876 GCCTACCCCGACTTGTTTGG 60.959 60.000 0.00 0.00 0.00 3.28
4505 4632 2.812011 CCGACTTGTTTGGGACTAAAGG 59.188 50.000 0.00 0.00 0.00 3.11
4506 4633 2.225727 CGACTTGTTTGGGACTAAAGGC 59.774 50.000 0.00 0.00 0.00 4.35
4507 4634 3.487372 GACTTGTTTGGGACTAAAGGCT 58.513 45.455 0.00 0.00 0.00 4.58
4508 4635 3.889538 GACTTGTTTGGGACTAAAGGCTT 59.110 43.478 0.00 0.00 0.00 4.35
4509 4636 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4510 4637 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4511 4638 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4512 4639 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
4513 4640 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
4514 4641 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4515 4642 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4516 4643 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4517 4644 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4518 4645 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
4519 4646 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4520 4647 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
4521 4648 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4522 4649 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
4523 4650 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4524 4651 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4525 4652 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4526 4653 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4527 4654 4.686554 GGCTTTGTTGTTGTTGTTGTTGTA 59.313 37.500 0.00 0.00 0.00 2.41
4632 5018 6.700960 TGTTGCACTTCCATTTATTTGAACAG 59.299 34.615 0.00 0.00 0.00 3.16
4810 5199 6.824704 TCATTGTATGCATCATTGAGACTCAA 59.175 34.615 19.85 19.85 41.09 3.02
4979 5368 6.924111 ACACCAGCTTGTTATTTAATTCTGG 58.076 36.000 0.00 0.00 43.90 3.86
5126 5515 5.302823 AGTTTCTAAAGCCATATGCATTCCC 59.697 40.000 3.54 0.00 44.83 3.97
5271 5660 9.468532 GAATTGAATAAACATGGAGATTTAGGC 57.531 33.333 0.00 0.00 0.00 3.93
5367 5756 0.744771 CTTAACCTCTTGGCCGCTCC 60.745 60.000 0.00 0.00 36.63 4.70
5466 5857 3.726291 TTTTGCACTTTCCCAGCTAAC 57.274 42.857 0.00 0.00 0.00 2.34
5520 5911 3.610040 ACGATCTGAATACAAGGCACA 57.390 42.857 0.00 0.00 0.00 4.57
5523 5914 3.684305 CGATCTGAATACAAGGCACACAA 59.316 43.478 0.00 0.00 0.00 3.33
5595 5986 8.432110 TGACATAAATAATAAGCACGATGTGT 57.568 30.769 0.00 0.00 35.75 3.72
5672 6063 7.179410 GGTTTGTTCAACAATGCTTAACTTTG 58.821 34.615 3.17 0.00 38.00 2.77
5880 6271 8.032451 ACCACAAAGGAAATTATCATAAAACGG 58.968 33.333 0.00 0.00 41.22 4.44
5947 6340 2.887152 GCAAGACCACAACAGAAGGAAT 59.113 45.455 0.00 0.00 0.00 3.01
6026 6419 4.811024 GTCTAGCATTGTATGTAGCTTGCA 59.189 41.667 5.62 0.00 38.47 4.08
6106 6500 4.223953 TGTGTCCTGTAATCCTCTATCCC 58.776 47.826 0.00 0.00 0.00 3.85
6158 6555 3.135530 AGTGTTCTTCAGTCCTTGCTTCT 59.864 43.478 0.00 0.00 0.00 2.85
6316 6715 7.048629 TCTTTTCTTTGATGGCAAACATACA 57.951 32.000 0.00 0.00 40.72 2.29
6408 6808 6.428159 AGACAAATCATAAGGACAAGTGTGAC 59.572 38.462 0.00 0.00 0.00 3.67
6417 6817 3.635373 AGGACAAGTGTGACGAGTCTTTA 59.365 43.478 4.78 0.00 30.97 1.85
6434 6834 4.740205 GTCTTTACTTTTGAAGCTTGTGCC 59.260 41.667 2.10 0.00 40.80 5.01
6453 6854 2.752154 GCCTCAATCTGAATGGCATCCT 60.752 50.000 0.00 0.00 37.57 3.24
6524 6925 3.181507 GGTAGTACAGTTGACGCGTCATA 60.182 47.826 39.38 26.38 39.64 2.15
6525 6926 3.777465 AGTACAGTTGACGCGTCATAT 57.223 42.857 39.38 27.98 39.64 1.78
6526 6927 4.888038 AGTACAGTTGACGCGTCATATA 57.112 40.909 39.38 24.29 39.64 0.86
6527 6928 4.595116 AGTACAGTTGACGCGTCATATAC 58.405 43.478 39.38 32.59 39.64 1.47
6570 6974 6.118852 TCCACCGATCAAATTGACATTGATA 58.881 36.000 0.00 0.00 45.11 2.15
6576 6980 7.641411 CCGATCAAATTGACATTGATACAGAAC 59.359 37.037 0.00 0.00 45.11 3.01
6626 7030 4.278170 TGTTCAGAATTCAGTGCCGAAATT 59.722 37.500 8.44 0.00 0.00 1.82
6661 7065 3.181468 CCCCGTCCAAGGATTTACTAGAC 60.181 52.174 0.00 0.00 0.00 2.59
6689 7093 1.352083 ACCTGGAGCAACTCTAGCAA 58.648 50.000 0.00 0.00 37.69 3.91
6710 7114 6.608405 AGCAAATTCCATAAATCACTCATCCA 59.392 34.615 0.00 0.00 0.00 3.41
6722 7126 3.058293 TCACTCATCCATTTGCACGTTTC 60.058 43.478 0.00 0.00 0.00 2.78
6782 7186 0.107831 ACGGCCTAGTCAGCAAAACA 59.892 50.000 0.00 0.00 0.00 2.83
6783 7187 0.517316 CGGCCTAGTCAGCAAAACAC 59.483 55.000 0.00 0.00 0.00 3.32
6798 7202 1.114722 AACACGACCCAACCGTCCTA 61.115 55.000 0.00 0.00 38.29 2.94
6814 7218 1.376812 CTACCCAAACTGACCCCGC 60.377 63.158 0.00 0.00 0.00 6.13
6816 7220 2.400269 TACCCAAACTGACCCCGCAC 62.400 60.000 0.00 0.00 0.00 5.34
6830 7234 4.400109 GCACGTCCGAGCTCACGA 62.400 66.667 27.42 13.94 39.38 4.35
6831 7235 2.485582 CACGTCCGAGCTCACGAT 59.514 61.111 27.42 12.71 39.38 3.73
6848 7252 3.056749 CACGATACCTCTTATACCCAGCC 60.057 52.174 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.705609 AACAAGCATATCGTGTCCTTTTT 57.294 34.783 0.00 0.00 36.38 1.94
12 13 5.009610 ACAAACAAGCATATCGTGTCCTTTT 59.990 36.000 0.00 0.00 36.38 2.27
13 14 4.518970 ACAAACAAGCATATCGTGTCCTTT 59.481 37.500 0.00 0.00 36.38 3.11
14 15 4.072131 ACAAACAAGCATATCGTGTCCTT 58.928 39.130 0.00 0.00 36.38 3.36
15 16 3.674997 ACAAACAAGCATATCGTGTCCT 58.325 40.909 0.00 0.00 36.38 3.85
16 17 5.734855 ATACAAACAAGCATATCGTGTCC 57.265 39.130 0.00 0.00 36.38 4.02
17 18 6.771076 TCAATACAAACAAGCATATCGTGTC 58.229 36.000 0.00 0.00 36.38 3.67
18 19 6.735678 TCAATACAAACAAGCATATCGTGT 57.264 33.333 0.00 0.00 39.06 4.49
19 20 8.011673 CCTATCAATACAAACAAGCATATCGTG 58.988 37.037 0.00 0.00 0.00 4.35
20 21 7.173218 CCCTATCAATACAAACAAGCATATCGT 59.827 37.037 0.00 0.00 0.00 3.73
21 22 7.173218 ACCCTATCAATACAAACAAGCATATCG 59.827 37.037 0.00 0.00 0.00 2.92
22 23 8.292448 CACCCTATCAATACAAACAAGCATATC 58.708 37.037 0.00 0.00 0.00 1.63
23 24 7.779798 ACACCCTATCAATACAAACAAGCATAT 59.220 33.333 0.00 0.00 0.00 1.78
24 25 7.116075 ACACCCTATCAATACAAACAAGCATA 58.884 34.615 0.00 0.00 0.00 3.14
25 26 5.951747 ACACCCTATCAATACAAACAAGCAT 59.048 36.000 0.00 0.00 0.00 3.79
26 27 5.321102 ACACCCTATCAATACAAACAAGCA 58.679 37.500 0.00 0.00 0.00 3.91
27 28 5.897377 ACACCCTATCAATACAAACAAGC 57.103 39.130 0.00 0.00 0.00 4.01
28 29 7.335627 TCCTACACCCTATCAATACAAACAAG 58.664 38.462 0.00 0.00 0.00 3.16
29 30 7.037873 ACTCCTACACCCTATCAATACAAACAA 60.038 37.037 0.00 0.00 0.00 2.83
30 31 6.442564 ACTCCTACACCCTATCAATACAAACA 59.557 38.462 0.00 0.00 0.00 2.83
31 32 6.885922 ACTCCTACACCCTATCAATACAAAC 58.114 40.000 0.00 0.00 0.00 2.93
32 33 7.620491 TGTACTCCTACACCCTATCAATACAAA 59.380 37.037 0.00 0.00 0.00 2.83
33 34 7.127405 TGTACTCCTACACCCTATCAATACAA 58.873 38.462 0.00 0.00 0.00 2.41
34 35 6.675565 TGTACTCCTACACCCTATCAATACA 58.324 40.000 0.00 0.00 0.00 2.29
35 36 7.603651 CATGTACTCCTACACCCTATCAATAC 58.396 42.308 0.00 0.00 35.63 1.89
36 37 6.210784 GCATGTACTCCTACACCCTATCAATA 59.789 42.308 0.00 0.00 35.63 1.90
37 38 5.012148 GCATGTACTCCTACACCCTATCAAT 59.988 44.000 0.00 0.00 35.63 2.57
38 39 4.344102 GCATGTACTCCTACACCCTATCAA 59.656 45.833 0.00 0.00 35.63 2.57
39 40 3.895656 GCATGTACTCCTACACCCTATCA 59.104 47.826 0.00 0.00 35.63 2.15
40 41 3.057456 CGCATGTACTCCTACACCCTATC 60.057 52.174 0.00 0.00 35.63 2.08
41 42 2.891580 CGCATGTACTCCTACACCCTAT 59.108 50.000 0.00 0.00 35.63 2.57
42 43 2.304092 CGCATGTACTCCTACACCCTA 58.696 52.381 0.00 0.00 35.63 3.53
43 44 1.112113 CGCATGTACTCCTACACCCT 58.888 55.000 0.00 0.00 35.63 4.34
44 45 0.822164 ACGCATGTACTCCTACACCC 59.178 55.000 0.00 0.00 35.63 4.61
45 46 3.075866 GTACGCATGTACTCCTACACC 57.924 52.381 0.00 0.00 46.07 4.16
58 59 1.146930 CAGGGGCTCATGTACGCAT 59.853 57.895 0.00 0.00 35.32 4.73
59 60 2.584064 CAGGGGCTCATGTACGCA 59.416 61.111 0.00 0.00 0.00 5.24
60 61 2.897350 GCAGGGGCTCATGTACGC 60.897 66.667 0.00 0.00 36.96 4.42
61 62 0.464373 AATGCAGGGGCTCATGTACG 60.464 55.000 0.00 0.00 41.91 3.67
62 63 1.767759 AAATGCAGGGGCTCATGTAC 58.232 50.000 0.00 0.00 41.91 2.90
63 64 3.882102 ATAAATGCAGGGGCTCATGTA 57.118 42.857 0.00 0.00 41.91 2.29
64 65 2.761786 ATAAATGCAGGGGCTCATGT 57.238 45.000 0.00 0.00 41.91 3.21
65 66 2.821969 GGTATAAATGCAGGGGCTCATG 59.178 50.000 0.00 0.00 41.91 3.07
66 67 2.553028 CGGTATAAATGCAGGGGCTCAT 60.553 50.000 0.00 0.00 41.91 2.90
67 68 1.202758 CGGTATAAATGCAGGGGCTCA 60.203 52.381 0.00 0.00 41.91 4.26
68 69 1.202770 ACGGTATAAATGCAGGGGCTC 60.203 52.381 0.00 0.00 41.91 4.70
69 70 0.843984 ACGGTATAAATGCAGGGGCT 59.156 50.000 0.00 0.00 41.91 5.19
70 71 0.951558 CACGGTATAAATGCAGGGGC 59.048 55.000 0.00 0.00 41.68 5.80
71 72 2.218603 GACACGGTATAAATGCAGGGG 58.781 52.381 0.00 0.00 0.00 4.79
72 73 2.912771 TGACACGGTATAAATGCAGGG 58.087 47.619 0.00 0.00 0.00 4.45
73 74 4.955925 TTTGACACGGTATAAATGCAGG 57.044 40.909 0.00 0.00 0.00 4.85
74 75 6.176975 TCTTTTGACACGGTATAAATGCAG 57.823 37.500 0.00 0.00 0.00 4.41
75 76 6.205853 ACTTCTTTTGACACGGTATAAATGCA 59.794 34.615 0.00 0.00 0.00 3.96
76 77 6.523201 CACTTCTTTTGACACGGTATAAATGC 59.477 38.462 0.00 0.00 0.00 3.56
77 78 7.581476 ACACTTCTTTTGACACGGTATAAATG 58.419 34.615 0.00 0.00 0.00 2.32
78 79 7.094933 GGACACTTCTTTTGACACGGTATAAAT 60.095 37.037 0.00 0.00 0.00 1.40
79 80 6.203338 GGACACTTCTTTTGACACGGTATAAA 59.797 38.462 0.00 0.00 0.00 1.40
80 81 5.697633 GGACACTTCTTTTGACACGGTATAA 59.302 40.000 0.00 0.00 0.00 0.98
81 82 5.232463 GGACACTTCTTTTGACACGGTATA 58.768 41.667 0.00 0.00 0.00 1.47
82 83 4.062991 GGACACTTCTTTTGACACGGTAT 58.937 43.478 0.00 0.00 0.00 2.73
83 84 3.460103 GGACACTTCTTTTGACACGGTA 58.540 45.455 0.00 0.00 0.00 4.02
84 85 2.285977 GGACACTTCTTTTGACACGGT 58.714 47.619 0.00 0.00 0.00 4.83
85 86 1.260561 CGGACACTTCTTTTGACACGG 59.739 52.381 0.00 0.00 0.00 4.94
86 87 1.931172 ACGGACACTTCTTTTGACACG 59.069 47.619 0.00 0.00 0.00 4.49
87 88 2.031683 CCACGGACACTTCTTTTGACAC 59.968 50.000 0.00 0.00 0.00 3.67
88 89 2.093394 TCCACGGACACTTCTTTTGACA 60.093 45.455 0.00 0.00 0.00 3.58
89 90 2.544267 CTCCACGGACACTTCTTTTGAC 59.456 50.000 0.00 0.00 0.00 3.18
90 91 2.484770 CCTCCACGGACACTTCTTTTGA 60.485 50.000 0.00 0.00 33.16 2.69
91 92 1.873591 CCTCCACGGACACTTCTTTTG 59.126 52.381 0.00 0.00 33.16 2.44
137 138 1.535462 GCTTACGCTTTTTCTGGCAGA 59.465 47.619 14.43 14.43 0.00 4.26
149 150 1.937899 ACACGAAAGTTTGCTTACGCT 59.062 42.857 0.00 0.00 46.40 5.07
165 166 0.875728 TTTATGTGGGCGGAAACACG 59.124 50.000 0.00 0.00 40.39 4.49
170 171 2.097791 GCGTATTTTTATGTGGGCGGAA 59.902 45.455 0.00 0.00 0.00 4.30
171 172 1.671845 GCGTATTTTTATGTGGGCGGA 59.328 47.619 0.00 0.00 0.00 5.54
174 175 1.402613 ACCGCGTATTTTTATGTGGGC 59.597 47.619 4.92 0.00 40.11 5.36
175 176 3.768468 AACCGCGTATTTTTATGTGGG 57.232 42.857 4.92 0.00 40.11 4.61
347 349 4.154347 GGGAGTCTCTGCTGCGGG 62.154 72.222 8.89 0.00 0.00 6.13
348 350 4.154347 GGGGAGTCTCTGCTGCGG 62.154 72.222 0.95 0.95 0.00 5.69
349 351 4.504916 CGGGGAGTCTCTGCTGCG 62.505 72.222 0.00 0.00 0.00 5.18
354 356 2.125350 GCAAGCGGGGAGTCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
355 357 1.915769 AAGCAAGCGGGGAGTCTCT 60.916 57.895 0.00 0.00 0.00 3.10
356 358 1.743252 CAAGCAAGCGGGGAGTCTC 60.743 63.158 0.00 0.00 0.00 3.36
360 362 3.058160 CACCAAGCAAGCGGGGAG 61.058 66.667 11.13 1.03 0.00 4.30
361 363 4.659172 CCACCAAGCAAGCGGGGA 62.659 66.667 11.13 0.00 0.00 4.81
454 467 2.696187 GAGGGGAAGGCAAGTAGAGTAG 59.304 54.545 0.00 0.00 0.00 2.57
455 468 2.626149 GGAGGGGAAGGCAAGTAGAGTA 60.626 54.545 0.00 0.00 0.00 2.59
456 469 1.574263 GAGGGGAAGGCAAGTAGAGT 58.426 55.000 0.00 0.00 0.00 3.24
457 470 0.833949 GGAGGGGAAGGCAAGTAGAG 59.166 60.000 0.00 0.00 0.00 2.43
458 471 0.620700 GGGAGGGGAAGGCAAGTAGA 60.621 60.000 0.00 0.00 0.00 2.59
990 1014 4.209866 ATCCGCATTCCTGCCCCC 62.210 66.667 0.00 0.00 46.07 5.40
1079 1103 1.392534 GAACAGAGAGGGGGAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
1093 1121 3.991773 CCGTAGAAATCGAAGGTTGAACA 59.008 43.478 0.00 0.00 0.00 3.18
1094 1122 3.370061 CCCGTAGAAATCGAAGGTTGAAC 59.630 47.826 0.00 0.00 0.00 3.18
1095 1123 3.592059 CCCGTAGAAATCGAAGGTTGAA 58.408 45.455 0.00 0.00 0.00 2.69
1304 1332 2.163613 CGAAATTAGGTGGAAACAGGGC 59.836 50.000 0.00 0.00 44.46 5.19
1328 1356 4.774586 TGCCCGCGTAAATAAATTAATCG 58.225 39.130 4.92 0.00 0.00 3.34
1343 1371 2.896854 ATACAGCACATGCCCGCG 60.897 61.111 0.00 0.00 43.38 6.46
1399 1433 5.067273 ACCAAATCACACAAACTCGGATAA 58.933 37.500 0.00 0.00 0.00 1.75
1401 1435 3.486383 ACCAAATCACACAAACTCGGAT 58.514 40.909 0.00 0.00 0.00 4.18
1454 1488 0.738389 AAAACAACACGTCCAGCAGG 59.262 50.000 0.00 0.00 0.00 4.85
1566 1600 0.832135 GGATCGTCCTCAGGGGCATA 60.832 60.000 0.00 0.00 36.96 3.14
1590 1624 4.402528 CCGAACATCCGGCCCACA 62.403 66.667 0.00 0.00 43.25 4.17
1653 1687 1.982612 CACTCACGAGCTCGATTTGA 58.017 50.000 40.58 30.16 43.02 2.69
1735 1770 9.366216 CATCTATACAACAGTTGCACTAAGTTA 57.634 33.333 13.56 0.00 0.00 2.24
1751 1786 7.004555 ACCTCACAGACAAACATCTATACAA 57.995 36.000 0.00 0.00 0.00 2.41
1756 1791 7.062749 AGTTAACCTCACAGACAAACATCTA 57.937 36.000 0.88 0.00 0.00 1.98
1757 1792 5.930135 AGTTAACCTCACAGACAAACATCT 58.070 37.500 0.88 0.00 0.00 2.90
1771 1806 2.157863 GCAGCGAACAGAAGTTAACCTC 59.842 50.000 0.88 0.00 38.30 3.85
1773 1808 1.871039 TGCAGCGAACAGAAGTTAACC 59.129 47.619 0.88 0.00 38.30 2.85
1774 1809 3.813529 ATGCAGCGAACAGAAGTTAAC 57.186 42.857 0.00 0.00 38.30 2.01
1775 1810 3.812609 TCAATGCAGCGAACAGAAGTTAA 59.187 39.130 0.00 0.00 38.30 2.01
1782 1817 1.400629 CCAAGTCAATGCAGCGAACAG 60.401 52.381 0.00 0.00 0.00 3.16
1911 1946 2.410262 GCACGTGATTGTGAGAAACTCG 60.410 50.000 22.23 0.00 42.55 4.18
1925 1960 0.945743 CTGCTAGCAACAGCACGTGA 60.946 55.000 22.23 0.00 46.41 4.35
1954 1990 6.139679 AGAATGGACCATAGTTTCTTTCCA 57.860 37.500 7.59 0.00 37.54 3.53
2008 2044 6.744112 AGTAGAAGAAGAATATGAGGAAGCG 58.256 40.000 0.00 0.00 0.00 4.68
2029 2065 9.330063 CAGAATAAAGCAATAAGTGATGGAGTA 57.670 33.333 0.00 0.00 0.00 2.59
2101 2140 7.874528 TGCAGTCTAACATGTCCAAGATATATG 59.125 37.037 0.00 3.24 0.00 1.78
2111 2150 4.697352 ACAAAGATGCAGTCTAACATGTCC 59.303 41.667 0.00 0.00 35.67 4.02
2180 2219 7.287810 AGGGTAAAGAGCAAAGTAAAGAGAAA 58.712 34.615 0.00 0.00 0.00 2.52
2190 2229 5.712152 AACATGAAGGGTAAAGAGCAAAG 57.288 39.130 0.00 0.00 0.00 2.77
2200 2239 4.469657 AGAAACTGCAAACATGAAGGGTA 58.530 39.130 0.00 0.00 0.00 3.69
2346 2386 7.027161 GGCGAACAATAAAATGTGTAAGTCAT 58.973 34.615 0.00 0.00 32.81 3.06
2381 2426 6.336566 AGACAGCAATCTACAATCTACTGTG 58.663 40.000 0.00 0.00 37.26 3.66
2382 2427 6.537453 AGACAGCAATCTACAATCTACTGT 57.463 37.500 0.00 0.00 39.67 3.55
2383 2428 6.238049 GCAAGACAGCAATCTACAATCTACTG 60.238 42.308 0.00 0.00 0.00 2.74
2384 2429 5.814705 GCAAGACAGCAATCTACAATCTACT 59.185 40.000 0.00 0.00 0.00 2.57
2385 2430 5.814705 AGCAAGACAGCAATCTACAATCTAC 59.185 40.000 0.00 0.00 36.85 2.59
2748 2817 9.239002 CAGTCTCTAAACAATAATAAGGACGAG 57.761 37.037 0.00 0.00 0.00 4.18
2751 2820 9.099454 CCACAGTCTCTAAACAATAATAAGGAC 57.901 37.037 0.00 0.00 0.00 3.85
2757 2826 6.599638 GCTTCCCACAGTCTCTAAACAATAAT 59.400 38.462 0.00 0.00 0.00 1.28
2777 2846 4.218417 ACAGTACACATTTTGATGGCTTCC 59.782 41.667 0.00 0.00 0.00 3.46
2861 2932 3.266510 TGTTGCTAGGAATGCCAGTAG 57.733 47.619 0.00 0.00 36.29 2.57
2959 3030 4.483476 ACAATTTACGCTCAAGGTCAAC 57.517 40.909 0.00 0.00 0.00 3.18
3078 3166 1.782201 TTGCAGTGACAGGGGCATCT 61.782 55.000 0.00 0.00 35.98 2.90
3093 3181 4.143543 TCTCTTGACCAATGATGTTTGCA 58.856 39.130 0.00 0.00 0.00 4.08
3105 3193 8.733092 AGATATCATTATTCCTCTCTTGACCA 57.267 34.615 5.32 0.00 0.00 4.02
3316 3406 5.708230 CACCTGTAAAGCTAACCCAATACAA 59.292 40.000 0.00 0.00 0.00 2.41
3356 3446 0.243636 GCAAATGTACCTGGGTGCAC 59.756 55.000 8.80 8.80 42.96 4.57
3404 3502 9.371136 GTTTTTCAGATTTTCCTGAGAACTTTT 57.629 29.630 0.00 0.00 43.28 2.27
3416 3514 8.685536 GCGCATATATGAGTTTTTCAGATTTTC 58.314 33.333 17.10 0.00 38.61 2.29
3460 3558 0.667184 GGCACGAAATTGGCAGGTTG 60.667 55.000 0.00 0.00 41.65 3.77
3498 3596 4.695455 CCTGTCTTATTTTTCTTGCTCGGA 59.305 41.667 0.00 0.00 0.00 4.55
3500 3598 5.862924 TCCTGTCTTATTTTTCTTGCTCG 57.137 39.130 0.00 0.00 0.00 5.03
3509 3607 7.855784 ATTTTGGACCTTCCTGTCTTATTTT 57.144 32.000 0.00 0.00 37.46 1.82
3539 3637 4.755266 AAGAAACTGTGTACTGTCAGGT 57.245 40.909 4.53 7.71 36.17 4.00
3593 3691 9.195411 TGAATGATACTTGAAACTGCAAATTTC 57.805 29.630 13.70 13.70 36.73 2.17
3686 3786 2.502295 GATGACCCCAGAAGATGCATC 58.498 52.381 19.37 19.37 0.00 3.91
3692 3792 1.123077 CATCCGATGACCCCAGAAGA 58.877 55.000 1.78 0.00 0.00 2.87
3693 3793 1.123077 TCATCCGATGACCCCAGAAG 58.877 55.000 7.00 0.00 33.59 2.85
3694 3794 1.806496 ATCATCCGATGACCCCAGAA 58.194 50.000 13.36 0.00 43.01 3.02
3707 3807 1.000283 CTCCTAGTGGCGACATCATCC 60.000 57.143 0.00 0.00 46.14 3.51
3736 3836 7.622502 TTAAGTGGTACTCCTAGTTTTTCCT 57.377 36.000 0.00 0.00 34.23 3.36
3737 3837 8.681486 TTTTAAGTGGTACTCCTAGTTTTTCC 57.319 34.615 0.00 0.00 34.23 3.13
3772 3892 6.474751 GGAAAGCAATTTAGAATGTCATGAGC 59.525 38.462 0.00 0.00 0.00 4.26
3830 3950 3.092334 ACATCAACCAAGAAAAACGGC 57.908 42.857 0.00 0.00 0.00 5.68
3876 3996 4.459852 AATATGCTCCATAAAGGCCAGT 57.540 40.909 5.01 0.00 37.29 4.00
3880 4000 4.321527 GCTCCAAATATGCTCCATAAAGGC 60.322 45.833 0.00 0.00 37.29 4.35
4022 4145 4.412199 TGACCTGATAGAAATACAAGGGGG 59.588 45.833 0.00 0.00 0.00 5.40
4186 4309 8.405418 AGAGCATAACATATGAGCATTTGAAT 57.595 30.769 10.38 0.00 0.00 2.57
4266 4392 0.767375 AGACTGGCAAGGAAGAAGCA 59.233 50.000 0.00 0.00 0.00 3.91
4332 4459 9.743057 CTCTAACCAGATGTTTATTAGTCTCAG 57.257 37.037 0.00 0.00 38.42 3.35
4345 4472 8.954350 CAAAATTCTGAATCTCTAACCAGATGT 58.046 33.333 2.92 0.00 35.82 3.06
4395 4522 2.334946 CCACGCACCCCAAGTCATG 61.335 63.158 0.00 0.00 0.00 3.07
4396 4523 2.034066 CCACGCACCCCAAGTCAT 59.966 61.111 0.00 0.00 0.00 3.06
4397 4524 2.674563 CTTCCACGCACCCCAAGTCA 62.675 60.000 0.00 0.00 0.00 3.41
4398 4525 1.966451 CTTCCACGCACCCCAAGTC 60.966 63.158 0.00 0.00 0.00 3.01
4399 4526 2.113139 CTTCCACGCACCCCAAGT 59.887 61.111 0.00 0.00 0.00 3.16
4400 4527 3.365265 GCTTCCACGCACCCCAAG 61.365 66.667 0.00 0.00 0.00 3.61
4401 4528 3.429372 AAGCTTCCACGCACCCCAA 62.429 57.895 0.00 0.00 0.00 4.12
4402 4529 3.884774 AAGCTTCCACGCACCCCA 61.885 61.111 0.00 0.00 0.00 4.96
4403 4530 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
4404 4531 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
4405 4532 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
4406 4533 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
4407 4534 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
4408 4535 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
4409 4536 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
4410 4537 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
4411 4538 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4412 4539 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4413 4540 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4414 4541 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4415 4542 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4416 4543 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4417 4544 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4418 4545 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4419 4546 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4420 4547 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4421 4548 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4422 4549 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4423 4550 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4424 4551 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4425 4552 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4426 4553 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4427 4554 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4428 4555 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4429 4556 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4430 4557 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4431 4558 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4439 4566 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
4440 4567 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
4441 4568 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
4442 4569 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
4443 4570 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
4444 4571 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
4445 4572 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
4446 4573 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
4447 4574 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
4448 4575 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
4449 4576 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
4450 4577 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
4465 4592 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4466 4593 1.875488 GGGGTAGGCTAGAGGTGAAA 58.125 55.000 0.00 0.00 0.00 2.69
4467 4594 0.396695 CGGGGTAGGCTAGAGGTGAA 60.397 60.000 0.00 0.00 0.00 3.18
4468 4595 1.229359 CGGGGTAGGCTAGAGGTGA 59.771 63.158 0.00 0.00 0.00 4.02
4469 4596 1.108132 GTCGGGGTAGGCTAGAGGTG 61.108 65.000 0.00 0.00 0.00 4.00
4470 4597 1.229643 GTCGGGGTAGGCTAGAGGT 59.770 63.158 0.00 0.00 0.00 3.85
4471 4598 0.106116 AAGTCGGGGTAGGCTAGAGG 60.106 60.000 0.00 0.00 0.00 3.69
4472 4599 1.033574 CAAGTCGGGGTAGGCTAGAG 58.966 60.000 0.00 0.00 0.00 2.43
4473 4600 0.333993 ACAAGTCGGGGTAGGCTAGA 59.666 55.000 0.00 0.00 0.00 2.43
4474 4601 1.192428 AACAAGTCGGGGTAGGCTAG 58.808 55.000 0.00 0.00 0.00 3.42
4475 4602 1.276989 CAAACAAGTCGGGGTAGGCTA 59.723 52.381 0.00 0.00 0.00 3.93
4476 4603 0.036306 CAAACAAGTCGGGGTAGGCT 59.964 55.000 0.00 0.00 0.00 4.58
4477 4604 0.958876 CCAAACAAGTCGGGGTAGGC 60.959 60.000 0.00 0.00 0.00 3.93
4478 4605 0.322187 CCCAAACAAGTCGGGGTAGG 60.322 60.000 0.00 0.00 36.21 3.18
4479 4606 0.688487 TCCCAAACAAGTCGGGGTAG 59.312 55.000 7.57 0.00 41.51 3.18
4480 4607 0.397564 GTCCCAAACAAGTCGGGGTA 59.602 55.000 7.57 0.00 41.51 3.69
4481 4608 1.149854 GTCCCAAACAAGTCGGGGT 59.850 57.895 7.57 0.00 41.51 4.95
4482 4609 0.688487 TAGTCCCAAACAAGTCGGGG 59.312 55.000 7.57 5.55 40.68 5.73
4483 4610 2.554370 TTAGTCCCAAACAAGTCGGG 57.446 50.000 2.08 2.08 41.76 5.14
4484 4611 2.812011 CCTTTAGTCCCAAACAAGTCGG 59.188 50.000 0.00 0.00 0.00 4.79
4485 4612 2.225727 GCCTTTAGTCCCAAACAAGTCG 59.774 50.000 0.00 0.00 0.00 4.18
4486 4613 3.487372 AGCCTTTAGTCCCAAACAAGTC 58.513 45.455 0.00 0.00 0.00 3.01
4487 4614 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4488 4615 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4489 4616 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4490 4617 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4491 4618 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
4492 4619 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
4493 4620 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4494 4621 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4495 4622 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
4496 4623 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
4497 4624 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
4498 4625 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
4499 4626 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
4500 4627 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
4501 4628 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4502 4629 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4503 4630 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4504 4631 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
4505 4632 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
4506 4633 8.018520 TCTAGTACAACAACAACAACAACAAAG 58.981 33.333 0.00 0.00 0.00 2.77
4507 4634 7.872881 TCTAGTACAACAACAACAACAACAAA 58.127 30.769 0.00 0.00 0.00 2.83
4508 4635 7.436430 TCTAGTACAACAACAACAACAACAA 57.564 32.000 0.00 0.00 0.00 2.83
4509 4636 7.299586 GTTCTAGTACAACAACAACAACAACA 58.700 34.615 0.00 0.00 0.00 3.33
4510 4637 6.744082 GGTTCTAGTACAACAACAACAACAAC 59.256 38.462 1.69 0.00 0.00 3.32
4511 4638 6.430308 TGGTTCTAGTACAACAACAACAACAA 59.570 34.615 1.69 0.00 0.00 2.83
4512 4639 5.938710 TGGTTCTAGTACAACAACAACAACA 59.061 36.000 1.69 0.00 0.00 3.33
4513 4640 6.425577 TGGTTCTAGTACAACAACAACAAC 57.574 37.500 1.69 0.00 0.00 3.32
4514 4641 6.824196 TCATGGTTCTAGTACAACAACAACAA 59.176 34.615 1.69 0.00 0.00 2.83
4515 4642 6.259167 GTCATGGTTCTAGTACAACAACAACA 59.741 38.462 1.69 0.00 0.00 3.33
4516 4643 6.482308 AGTCATGGTTCTAGTACAACAACAAC 59.518 38.462 1.69 0.00 0.00 3.32
4517 4644 6.588204 AGTCATGGTTCTAGTACAACAACAA 58.412 36.000 1.69 0.00 0.00 2.83
4518 4645 6.169557 AGTCATGGTTCTAGTACAACAACA 57.830 37.500 1.69 0.00 0.00 3.33
4519 4646 8.656849 CATTAGTCATGGTTCTAGTACAACAAC 58.343 37.037 1.69 0.00 0.00 3.32
4520 4647 8.590204 TCATTAGTCATGGTTCTAGTACAACAA 58.410 33.333 1.69 0.00 33.07 2.83
4521 4648 8.129496 TCATTAGTCATGGTTCTAGTACAACA 57.871 34.615 1.69 0.00 33.07 3.33
4522 4649 8.997621 TTCATTAGTCATGGTTCTAGTACAAC 57.002 34.615 1.69 0.00 33.07 3.32
4523 4650 9.653287 CTTTCATTAGTCATGGTTCTAGTACAA 57.347 33.333 1.69 0.00 33.07 2.41
4524 4651 9.031537 TCTTTCATTAGTCATGGTTCTAGTACA 57.968 33.333 1.69 0.00 33.07 2.90
4525 4652 9.522804 CTCTTTCATTAGTCATGGTTCTAGTAC 57.477 37.037 0.00 0.00 33.07 2.73
4526 4653 8.696374 CCTCTTTCATTAGTCATGGTTCTAGTA 58.304 37.037 0.00 0.00 33.07 1.82
4527 4654 7.181125 ACCTCTTTCATTAGTCATGGTTCTAGT 59.819 37.037 0.00 0.00 33.07 2.57
4565 4692 6.587990 ACTCGCACATGCTATTACTATTCATC 59.412 38.462 1.82 0.00 39.32 2.92
4828 5217 3.834813 AGTACATCTGCAGAAAGGTCAGA 59.165 43.478 22.50 2.19 40.62 3.27
4979 5368 3.876274 TGCTCTGTGAAGAGGTACATC 57.124 47.619 0.00 0.00 36.49 3.06
5126 5515 8.053411 CACAAACTGATGTGTATTGAAAGTTG 57.947 34.615 9.21 0.00 44.46 3.16
5216 5605 4.322574 CCATGTCGCCATCTCTCATTCTAT 60.323 45.833 0.00 0.00 0.00 1.98
5239 5628 7.601856 TCTCCATGTTTATTCAATTCACCAAC 58.398 34.615 0.00 0.00 0.00 3.77
5299 5688 1.881973 GAAGCAAGGACAGATGCACAA 59.118 47.619 0.00 0.00 44.95 3.33
5367 5756 2.168521 TCCTAGCCCAAGAAAGACATCG 59.831 50.000 0.00 0.00 0.00 3.84
5466 5857 5.869350 ACGTCAACAGAAAGAAAAGAACAG 58.131 37.500 0.00 0.00 0.00 3.16
5595 5986 7.392953 TGCAATCTGAAACTGTGATTTATACCA 59.607 33.333 0.00 0.00 0.00 3.25
5596 5987 7.761409 TGCAATCTGAAACTGTGATTTATACC 58.239 34.615 0.00 0.00 0.00 2.73
5672 6063 5.858581 AGAACATGAAGCGCAGAAATTTTAC 59.141 36.000 11.47 0.00 0.00 2.01
5880 6271 1.275291 TCGAAGAGATGGTTGGGTCAC 59.725 52.381 0.00 0.00 0.00 3.67
5947 6340 3.737559 ATACACATTTCCTTCCCTGCA 57.262 42.857 0.00 0.00 0.00 4.41
6026 6419 5.814705 GCTATCAGATTAACAAGCACTCTGT 59.185 40.000 0.00 0.00 35.83 3.41
6316 6715 4.038763 TGTGTGACGTCAAATCCTAGTCTT 59.961 41.667 21.95 0.00 33.40 3.01
6383 6783 6.428159 GTCACACTTGTCCTTATGATTTGTCT 59.572 38.462 0.00 0.00 0.00 3.41
6408 6808 5.904080 CACAAGCTTCAAAAGTAAAGACTCG 59.096 40.000 0.00 0.00 33.58 4.18
6434 6834 5.126545 TGAAAAGGATGCCATTCAGATTGAG 59.873 40.000 0.00 0.00 31.39 3.02
6570 6974 8.040132 TGGAAATGAGATTTTTGTTTGTTCTGT 58.960 29.630 0.00 0.00 31.47 3.41
6576 6980 5.179929 GGCCTGGAAATGAGATTTTTGTTTG 59.820 40.000 0.00 0.00 31.47 2.93
6588 6992 3.523157 TCTGAACATAGGCCTGGAAATGA 59.477 43.478 17.99 2.65 0.00 2.57
6626 7030 1.756538 GGACGGGGAAGTAAATCGGTA 59.243 52.381 0.00 0.00 0.00 4.02
6661 7065 0.037326 TTGCTCCAGGTAGAACAGCG 60.037 55.000 0.00 0.00 32.43 5.18
6689 7093 7.929785 GCAAATGGATGAGTGATTTATGGAATT 59.070 33.333 0.00 0.00 0.00 2.17
6710 7114 5.376854 AAATGCTCTAGAAACGTGCAAAT 57.623 34.783 7.59 0.00 37.20 2.32
6722 7126 1.871080 CCCGGCTGTAAATGCTCTAG 58.129 55.000 0.00 0.00 0.00 2.43
6782 7186 2.278330 GGTAGGACGGTTGGGTCGT 61.278 63.158 0.00 0.00 44.03 4.34
6783 7187 2.575461 GGTAGGACGGTTGGGTCG 59.425 66.667 0.00 0.00 37.82 4.79
6798 7202 3.494254 TGCGGGGTCAGTTTGGGT 61.494 61.111 0.00 0.00 0.00 4.51
6814 7218 0.589229 GTATCGTGAGCTCGGACGTG 60.589 60.000 21.64 3.94 36.91 4.49
6816 7220 1.009900 GGTATCGTGAGCTCGGACG 60.010 63.158 17.88 17.88 36.91 4.79
6822 7226 4.080687 GGGTATAAGAGGTATCGTGAGCT 58.919 47.826 0.00 0.00 0.00 4.09
6824 7228 4.082679 GCTGGGTATAAGAGGTATCGTGAG 60.083 50.000 0.00 0.00 0.00 3.51
6830 7234 3.648683 TGGGCTGGGTATAAGAGGTAT 57.351 47.619 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.