Multiple sequence alignment - TraesCS5B01G301900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G301900 chr5B 100.000 5490 0 0 1 5490 486370000 486364511 0.000000e+00 10139.0
1 TraesCS5B01G301900 chr5B 90.909 121 9 2 5219 5338 194185031 194185150 1.580000e-35 161.0
2 TraesCS5B01G301900 chr5B 98.387 62 1 0 5361 5422 486364702 486364641 5.810000e-20 110.0
3 TraesCS5B01G301900 chr5B 95.000 40 0 2 5361 5399 94661824 94661786 1.650000e-05 62.1
4 TraesCS5B01G301900 chr5B 94.737 38 0 2 5363 5399 617045237 617045201 2.140000e-04 58.4
5 TraesCS5B01G301900 chr5D 95.395 3887 113 32 13 3879 405399921 405396081 0.000000e+00 6126.0
6 TraesCS5B01G301900 chr5D 91.076 1255 61 21 3756 4970 405396082 405394839 0.000000e+00 1650.0
7 TraesCS5B01G301900 chr5D 79.681 251 42 8 5091 5335 318459953 318459706 7.310000e-39 172.0
8 TraesCS5B01G301900 chr5D 97.222 36 1 0 5364 5399 449693667 449693632 1.650000e-05 62.1
9 TraesCS5B01G301900 chr5A 94.192 3254 106 32 296 3507 509035297 509038509 0.000000e+00 4885.0
10 TraesCS5B01G301900 chr5A 92.832 1395 67 19 3561 4935 509038498 509039879 0.000000e+00 1991.0
11 TraesCS5B01G301900 chr5A 89.773 88 7 1 5142 5227 126268526 126268439 1.620000e-20 111.0
12 TraesCS5B01G301900 chr5A 87.000 100 11 2 5130 5227 368675382 368675283 1.620000e-20 111.0
13 TraesCS5B01G301900 chr5A 97.297 37 0 1 5365 5401 120780763 120780728 1.650000e-05 62.1
14 TraesCS5B01G301900 chr5A 97.222 36 1 0 5362 5397 689384615 689384580 1.650000e-05 62.1
15 TraesCS5B01G301900 chr5A 94.737 38 2 0 5362 5399 662954634 662954671 5.940000e-05 60.2
16 TraesCS5B01G301900 chr7D 78.112 466 71 23 1087 1547 252244009 252243570 3.260000e-67 267.0
17 TraesCS5B01G301900 chr7D 78.512 242 43 8 5107 5341 178614070 178613831 3.430000e-32 150.0
18 TraesCS5B01G301900 chr7B 77.468 466 73 18 1087 1545 228920531 228920091 3.280000e-62 250.0
19 TraesCS5B01G301900 chr4A 82.759 203 30 3 5085 5283 660207856 660207655 5.650000e-40 176.0
20 TraesCS5B01G301900 chr4A 92.500 40 3 0 5361 5400 537589466 537589427 2.140000e-04 58.4
21 TraesCS5B01G301900 chr7A 92.920 113 8 0 5223 5335 524701367 524701255 1.220000e-36 165.0
22 TraesCS5B01G301900 chr6D 92.174 115 9 0 5220 5334 431160714 431160828 4.400000e-36 163.0
23 TraesCS5B01G301900 chr6B 89.844 128 11 2 5209 5336 683376197 683376072 4.400000e-36 163.0
24 TraesCS5B01G301900 chr2A 89.516 124 11 2 5219 5341 367649276 367649154 7.360000e-34 156.0
25 TraesCS5B01G301900 chr2A 89.362 94 8 1 5134 5225 39327513 39327420 3.470000e-22 117.0
26 TraesCS5B01G301900 chr3A 89.431 123 9 3 5216 5337 375818356 375818237 9.520000e-33 152.0
27 TraesCS5B01G301900 chr3D 87.619 105 9 3 5127 5227 429097610 429097506 9.660000e-23 119.0
28 TraesCS5B01G301900 chr3B 88.660 97 8 2 5135 5228 406868787 406868883 1.250000e-21 115.0
29 TraesCS5B01G301900 chr6A 90.698 86 6 1 5141 5224 428693 428778 4.490000e-21 113.0
30 TraesCS5B01G301900 chr2D 100.000 33 0 0 5362 5394 120107982 120108014 1.650000e-05 62.1
31 TraesCS5B01G301900 chr2B 94.737 38 0 1 5107 5144 799520851 799520816 2.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G301900 chr5B 486364511 486370000 5489 True 10139 10139 100.0000 1 5490 1 chr5B.!!$R2 5489
1 TraesCS5B01G301900 chr5D 405394839 405399921 5082 True 3888 6126 93.2355 13 4970 2 chr5D.!!$R3 4957
2 TraesCS5B01G301900 chr5A 509035297 509039879 4582 False 3438 4885 93.5120 296 4935 2 chr5A.!!$F2 4639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 500 0.038021 TGAAGCAGCCTTGGCACATA 59.962 50.000 14.54 0.0 39.30 2.29 F
495 502 0.038744 AAGCAGCCTTGGCACATAGT 59.961 50.000 14.54 0.0 39.30 2.12 F
949 957 0.824759 GATTAGCTCCGTGGACTGGT 59.175 55.000 0.00 0.0 0.00 4.00 F
2080 2102 1.202510 GCAACAACATTGTCAGCCCAA 60.203 47.619 9.71 0.0 41.31 4.12 F
2355 2392 2.887151 AGGTGGTTTCCTGAAGATGG 57.113 50.000 0.00 0.0 36.35 3.51 F
3447 3488 2.242043 CTGGATTTGCCCTCAACTTGT 58.758 47.619 0.00 0.0 34.97 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2006 0.321210 TTTCCTTCGATCTTGCCGCA 60.321 50.000 0.0 0.00 0.00 5.69 R
2355 2392 2.593346 ATGACAGAAGATCTCCACGC 57.407 50.000 0.0 0.00 0.00 5.34 R
2621 2658 1.277557 CTTGAGACCAGCCAACTAGCT 59.722 52.381 0.0 0.00 46.45 3.32 R
3154 3191 1.122227 ACAGCCAAAAACTGCACCAT 58.878 45.000 0.0 0.00 38.79 3.55 R
4225 4403 0.388520 GGTTGCTTCCGAATTGGTGC 60.389 55.000 0.0 1.55 39.52 5.01 R
4525 4724 0.179001 ACACCAAAGCCACTACACCC 60.179 55.000 0.0 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.818132 GGACCATCTCCCGCTCTG 59.182 66.667 0.00 0.00 31.83 3.35
33 34 1.760086 CCATCTCCCGCTCTGTCCT 60.760 63.158 0.00 0.00 0.00 3.85
59 60 0.950116 GGCAAGCATCCACTAGCATC 59.050 55.000 0.00 0.00 0.00 3.91
77 78 2.945080 TCGGTATCGATGGTAGAGGT 57.055 50.000 8.54 0.00 40.88 3.85
102 103 3.009723 ACCATCCTTCGTGCTAACATTG 58.990 45.455 0.00 0.00 0.00 2.82
105 106 3.394674 TCCTTCGTGCTAACATTGTCA 57.605 42.857 0.00 0.00 0.00 3.58
113 114 5.404366 TCGTGCTAACATTGTCACTTCTAAC 59.596 40.000 5.80 0.00 0.00 2.34
122 124 5.592104 TTGTCACTTCTAACAGTCAGACA 57.408 39.130 2.66 0.00 31.28 3.41
161 163 3.496155 GACAAGTAAGTCGTAGGTTCGG 58.504 50.000 0.00 0.00 0.00 4.30
187 189 1.225704 CCACAGCCTTCATCTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
194 196 0.835941 CCTTCATCTCCCCTGGTGAG 59.164 60.000 0.00 0.00 0.00 3.51
217 220 0.673437 ACATTTCTTGTTGGTGGCGG 59.327 50.000 0.00 0.00 33.74 6.13
238 242 3.181489 GGAGCCAGAAATTGAAGATGCTG 60.181 47.826 0.00 0.00 0.00 4.41
241 245 4.082354 AGCCAGAAATTGAAGATGCTGAAC 60.082 41.667 0.00 0.00 0.00 3.18
242 246 4.321452 GCCAGAAATTGAAGATGCTGAACA 60.321 41.667 0.00 0.00 0.00 3.18
243 247 5.623824 GCCAGAAATTGAAGATGCTGAACAT 60.624 40.000 0.00 0.00 43.54 2.71
244 248 6.405065 GCCAGAAATTGAAGATGCTGAACATA 60.405 38.462 0.00 0.00 39.84 2.29
245 249 6.971184 CCAGAAATTGAAGATGCTGAACATAC 59.029 38.462 0.00 0.00 39.84 2.39
246 250 6.971184 CAGAAATTGAAGATGCTGAACATACC 59.029 38.462 0.00 0.00 39.84 2.73
247 251 6.660521 AGAAATTGAAGATGCTGAACATACCA 59.339 34.615 0.00 0.00 39.84 3.25
248 252 6.839124 AATTGAAGATGCTGAACATACCAA 57.161 33.333 0.00 0.00 39.84 3.67
249 253 6.839124 ATTGAAGATGCTGAACATACCAAA 57.161 33.333 0.00 0.00 39.84 3.28
250 254 6.839124 TTGAAGATGCTGAACATACCAAAT 57.161 33.333 0.00 0.00 39.84 2.32
251 255 6.198650 TGAAGATGCTGAACATACCAAATG 57.801 37.500 0.00 0.00 39.84 2.32
252 256 5.945191 TGAAGATGCTGAACATACCAAATGA 59.055 36.000 0.00 0.00 39.84 2.57
253 257 6.604396 TGAAGATGCTGAACATACCAAATGAT 59.396 34.615 0.00 0.00 39.84 2.45
254 258 6.630444 AGATGCTGAACATACCAAATGATC 57.370 37.500 0.00 0.00 39.84 2.92
274 278 2.432510 TCCAAACAACCCAACATTGTCC 59.567 45.455 0.00 0.00 39.36 4.02
298 302 9.354673 TCCATAAGAGGAGCCAAATTAAATTAG 57.645 33.333 0.00 0.00 32.77 1.73
315 319 8.698973 TTAAATTAGGGAATTCAGTGACACAA 57.301 30.769 8.59 0.00 34.01 3.33
316 320 6.575162 AATTAGGGAATTCAGTGACACAAC 57.425 37.500 8.59 0.00 28.60 3.32
318 322 3.897239 AGGGAATTCAGTGACACAACAA 58.103 40.909 8.59 0.00 0.00 2.83
319 323 3.885297 AGGGAATTCAGTGACACAACAAG 59.115 43.478 8.59 0.00 0.00 3.16
321 325 4.338118 GGGAATTCAGTGACACAACAAGAA 59.662 41.667 8.59 4.42 0.00 2.52
326 330 4.522114 TCAGTGACACAACAAGAATTCCA 58.478 39.130 8.59 0.00 0.00 3.53
343 347 3.955650 TCCACTAAAGAGAGGAAACCG 57.044 47.619 0.00 0.00 39.27 4.44
485 492 3.097342 AGGAATGAATGAAGCAGCCTT 57.903 42.857 0.00 0.00 0.00 4.35
491 498 0.828762 AATGAAGCAGCCTTGGCACA 60.829 50.000 14.54 6.25 0.00 4.57
493 500 0.038021 TGAAGCAGCCTTGGCACATA 59.962 50.000 14.54 0.00 39.30 2.29
494 501 0.737219 GAAGCAGCCTTGGCACATAG 59.263 55.000 14.54 0.00 39.30 2.23
495 502 0.038744 AAGCAGCCTTGGCACATAGT 59.961 50.000 14.54 0.00 39.30 2.12
496 503 0.911769 AGCAGCCTTGGCACATAGTA 59.088 50.000 14.54 0.00 39.30 1.82
497 504 1.017387 GCAGCCTTGGCACATAGTAC 58.983 55.000 14.54 0.00 39.30 2.73
498 505 1.407437 GCAGCCTTGGCACATAGTACT 60.407 52.381 14.54 0.00 39.30 2.73
499 506 2.158957 GCAGCCTTGGCACATAGTACTA 60.159 50.000 14.54 4.77 39.30 1.82
504 511 5.823045 AGCCTTGGCACATAGTACTATTTTC 59.177 40.000 12.87 1.46 39.30 2.29
505 512 5.008712 GCCTTGGCACATAGTACTATTTTCC 59.991 44.000 12.87 11.20 39.30 3.13
507 514 6.828785 CCTTGGCACATAGTACTATTTTCCTT 59.171 38.462 12.87 0.00 39.30 3.36
732 740 1.745264 CTCTCGCTCCCATTCCCTC 59.255 63.158 0.00 0.00 0.00 4.30
740 748 1.772156 CCCATTCCCTCTCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
757 765 3.123620 CCTTGCTCAGCTCCGTGC 61.124 66.667 0.00 0.00 43.29 5.34
892 900 4.995124 TCCAGCGTAATCTTAGTTCTGAC 58.005 43.478 0.00 0.00 0.00 3.51
893 901 4.705507 TCCAGCGTAATCTTAGTTCTGACT 59.294 41.667 0.00 0.00 39.97 3.41
894 902 5.185249 TCCAGCGTAATCTTAGTTCTGACTT 59.815 40.000 0.00 0.00 37.33 3.01
895 903 5.517054 CCAGCGTAATCTTAGTTCTGACTTC 59.483 44.000 0.00 0.00 37.33 3.01
896 904 6.326375 CAGCGTAATCTTAGTTCTGACTTCT 58.674 40.000 0.00 0.00 37.33 2.85
897 905 6.252441 CAGCGTAATCTTAGTTCTGACTTCTG 59.748 42.308 0.00 0.00 37.33 3.02
898 906 6.151312 AGCGTAATCTTAGTTCTGACTTCTGA 59.849 38.462 0.00 0.00 37.33 3.27
947 955 2.544685 CTTGATTAGCTCCGTGGACTG 58.455 52.381 0.00 0.00 0.00 3.51
949 957 0.824759 GATTAGCTCCGTGGACTGGT 59.175 55.000 0.00 0.00 0.00 4.00
1137 1145 2.861974 TTCCCCACCAGGAACCCC 60.862 66.667 0.00 0.00 41.08 4.95
1191 1199 3.060615 CCCGACGACCTCGACCTT 61.061 66.667 0.78 0.00 46.14 3.50
1688 1697 4.689612 TCCACTGGTGAGATTATTAGCC 57.310 45.455 1.93 0.00 0.00 3.93
1761 1783 2.951726 TGCACGAACTGAGAAGAGATG 58.048 47.619 0.00 0.00 0.00 2.90
1762 1784 2.558359 TGCACGAACTGAGAAGAGATGA 59.442 45.455 0.00 0.00 0.00 2.92
1763 1785 3.194329 TGCACGAACTGAGAAGAGATGAT 59.806 43.478 0.00 0.00 0.00 2.45
1984 2006 6.126361 ACAGGATTTGGGCTAATAGACAATCT 60.126 38.462 6.26 0.00 0.00 2.40
2080 2102 1.202510 GCAACAACATTGTCAGCCCAA 60.203 47.619 9.71 0.00 41.31 4.12
2116 2138 5.824624 ACAGGTATGCATTATCTTTGGAGTG 59.175 40.000 3.54 0.00 0.00 3.51
2136 2158 8.691797 TGGAGTGTTTCTGCTTATAAAGTTTTT 58.308 29.630 0.00 0.00 35.48 1.94
2355 2392 2.887151 AGGTGGTTTCCTGAAGATGG 57.113 50.000 0.00 0.00 36.35 3.51
2429 2466 5.654209 AGCCATTTTAAGGATGGAAGTTCTC 59.346 40.000 18.90 0.00 45.59 2.87
2618 2655 8.544622 TGATAATATTGAGGTACCACTTGTTGA 58.455 33.333 15.94 0.00 0.00 3.18
2621 2658 4.698201 TTGAGGTACCACTTGTTGATGA 57.302 40.909 15.94 0.00 0.00 2.92
2632 2669 3.244700 ACTTGTTGATGAGCTAGTTGGCT 60.245 43.478 0.00 0.00 46.11 4.75
2658 2695 9.720874 TGGTCTCAAGCTATATCCATTATAGAT 57.279 33.333 4.27 0.00 41.61 1.98
2661 2698 8.355913 TCTCAAGCTATATCCATTATAGATGCG 58.644 37.037 4.27 0.00 41.61 4.73
2794 2831 3.248602 GGGCAACGATCTGTGTGATAATC 59.751 47.826 0.00 0.00 35.14 1.75
2798 2835 6.314018 GCAACGATCTGTGTGATAATCAAAA 58.686 36.000 0.00 0.00 35.14 2.44
2892 2929 7.568134 GCTTAAGTTGAATCAACATGCAAGTTG 60.568 37.037 25.01 25.01 45.66 3.16
2978 3015 3.502123 TTTCCCGAACTTGGATTGACT 57.498 42.857 0.00 0.00 0.00 3.41
3008 3045 6.770785 ACTAGTCATTGCCAAGTTCTAAAACA 59.229 34.615 0.00 0.00 37.88 2.83
3071 3108 7.716612 AGAAAGGAAAAGAAAATGTGGTGTAG 58.283 34.615 0.00 0.00 0.00 2.74
3154 3191 4.643795 GCTAGTGCTGCCCATTCA 57.356 55.556 0.00 0.00 36.03 2.57
3249 3286 2.629137 TGCATTTTCTGTGTGCAGGAAT 59.371 40.909 0.00 0.00 43.30 3.01
3261 3298 6.058833 TGTGTGCAGGAATGTAGACTTTTTA 58.941 36.000 0.00 0.00 0.00 1.52
3262 3299 6.714810 TGTGTGCAGGAATGTAGACTTTTTAT 59.285 34.615 0.00 0.00 0.00 1.40
3263 3300 7.880713 TGTGTGCAGGAATGTAGACTTTTTATA 59.119 33.333 0.00 0.00 0.00 0.98
3264 3301 8.175716 GTGTGCAGGAATGTAGACTTTTTATAC 58.824 37.037 0.00 0.00 0.00 1.47
3265 3302 8.100791 TGTGCAGGAATGTAGACTTTTTATACT 58.899 33.333 0.00 0.00 0.00 2.12
3266 3303 8.391106 GTGCAGGAATGTAGACTTTTTATACTG 58.609 37.037 0.00 0.00 0.00 2.74
3426 3467 3.181445 TGGTCTTTCTGCCTTCTAGCAAA 60.181 43.478 0.00 0.00 43.52 3.68
3447 3488 2.242043 CTGGATTTGCCCTCAACTTGT 58.758 47.619 0.00 0.00 34.97 3.16
3524 3570 5.414454 TGTTTTTCGGGATGAAGATACTTGG 59.586 40.000 0.00 0.00 37.99 3.61
3607 3654 8.435187 AGCTAATGACCATTCTTCTCATTATGA 58.565 33.333 0.00 0.00 36.66 2.15
3608 3655 9.060347 GCTAATGACCATTCTTCTCATTATGAA 57.940 33.333 0.00 0.00 36.66 2.57
3712 3761 5.815740 CCACCTACAAGATGGTAATACACAC 59.184 44.000 0.00 0.00 34.79 3.82
3719 3768 8.044060 ACAAGATGGTAATACACACATTTCTG 57.956 34.615 0.00 0.00 0.00 3.02
3731 3780 5.838521 ACACACATTTCTGACCCCTAAATTT 59.161 36.000 0.00 0.00 0.00 1.82
3733 3782 5.245977 ACACATTTCTGACCCCTAAATTTGG 59.754 40.000 0.00 0.00 28.99 3.28
3737 3786 3.773560 TCTGACCCCTAAATTTGGTTGG 58.226 45.455 0.00 3.52 30.97 3.77
3748 3797 8.208224 CCCTAAATTTGGTTGGTTCTAGTTTTT 58.792 33.333 0.00 0.00 0.00 1.94
3829 3997 6.656270 TGATGCATATAATAGAAGCAGGGTTG 59.344 38.462 0.00 0.00 38.75 3.77
3886 4058 4.460263 TGTTTGCAATCTGAGTACCTGTT 58.540 39.130 0.00 0.00 0.00 3.16
3917 4089 8.204160 AGGAACTTTACGATGTCAATGATGATA 58.796 33.333 0.00 0.00 33.55 2.15
3922 4094 9.855361 CTTTACGATGTCAATGATGATAAGAAC 57.145 33.333 0.00 0.00 38.01 3.01
4019 4196 8.552034 CACGTTTCTTTCAGTTTTATCTCTCTT 58.448 33.333 0.00 0.00 0.00 2.85
4039 4216 9.883142 CTCTCTTCTTACACCTTTATTCTCATT 57.117 33.333 0.00 0.00 0.00 2.57
4040 4217 9.877178 TCTCTTCTTACACCTTTATTCTCATTC 57.123 33.333 0.00 0.00 0.00 2.67
4048 4226 6.040166 ACACCTTTATTCTCATTCATGCCATC 59.960 38.462 0.00 0.00 0.00 3.51
4080 4258 8.723311 CGTACACAAGGGAATTTCAAAGTATTA 58.277 33.333 0.00 0.00 0.00 0.98
4263 4441 1.538512 CCAGCAGATGTTCCACAACAG 59.461 52.381 0.00 0.00 45.85 3.16
4468 4649 2.609299 TGGGGCGATGGGAAGTCA 60.609 61.111 0.00 0.00 0.00 3.41
4480 4661 2.683933 AAGTCATCGGGAGGCGGT 60.684 61.111 0.00 0.00 0.00 5.68
4504 4685 3.616560 GCATCTGAAACAACTAGGTCCGA 60.617 47.826 0.00 0.00 0.00 4.55
4525 4724 2.000447 AGATGATGATGATGATGCGCG 59.000 47.619 0.00 0.00 0.00 6.86
4577 4776 2.621526 GTTTCGGTTGAACAGTTGGGAT 59.378 45.455 0.00 0.00 32.71 3.85
4609 4808 1.522806 TGTTGACAGTGTCGTGGGC 60.523 57.895 18.17 7.02 34.95 5.36
4685 4884 2.554370 TTGGTTTTGGTCCGGTAGAG 57.446 50.000 0.00 0.00 0.00 2.43
4742 4941 5.389307 CCATGTTGTTGTTGTTGTTGTTGTC 60.389 40.000 0.00 0.00 0.00 3.18
4810 5014 4.661222 TGGGCATGTTAGAAATGAACAGA 58.339 39.130 0.00 0.00 40.01 3.41
4820 5024 8.845227 TGTTAGAAATGAACAGACTAATTGCAA 58.155 29.630 0.00 0.00 33.03 4.08
4857 5061 6.042093 TGCTGGAACCATTTTATTTGTTACCA 59.958 34.615 0.00 0.00 0.00 3.25
4858 5062 7.102993 GCTGGAACCATTTTATTTGTTACCAT 58.897 34.615 0.00 0.00 0.00 3.55
4865 5069 8.646900 ACCATTTTATTTGTTACCATGTTGTCT 58.353 29.630 0.00 0.00 0.00 3.41
4866 5070 9.139174 CCATTTTATTTGTTACCATGTTGTCTC 57.861 33.333 0.00 0.00 0.00 3.36
4908 5123 3.050275 GTGCTCGGGAACTGGTGC 61.050 66.667 0.00 0.00 35.78 5.01
4909 5124 3.241530 TGCTCGGGAACTGGTGCT 61.242 61.111 0.00 0.00 36.09 4.40
4910 5125 2.032681 GCTCGGGAACTGGTGCTT 59.967 61.111 0.00 0.00 33.41 3.91
4911 5126 2.035442 GCTCGGGAACTGGTGCTTC 61.035 63.158 0.00 0.00 33.41 3.86
4942 5157 8.556589 TCCTATTTTCTCTACAAATCCATCCAA 58.443 33.333 0.00 0.00 0.00 3.53
4943 5158 9.359653 CCTATTTTCTCTACAAATCCATCCAAT 57.640 33.333 0.00 0.00 0.00 3.16
4970 5185 6.410222 TTTAAGGGATGATTTTCCTACCCA 57.590 37.500 0.00 0.00 39.73 4.51
4971 5186 3.953542 AGGGATGATTTTCCTACCCAC 57.046 47.619 0.00 0.00 39.73 4.61
4972 5187 2.172717 AGGGATGATTTTCCTACCCACG 59.827 50.000 0.00 0.00 39.73 4.94
4973 5188 2.171870 GGGATGATTTTCCTACCCACGA 59.828 50.000 0.00 0.00 37.50 4.35
4974 5189 3.467803 GGATGATTTTCCTACCCACGAG 58.532 50.000 0.00 0.00 32.68 4.18
4975 5190 3.467803 GATGATTTTCCTACCCACGAGG 58.532 50.000 0.00 0.00 43.78 4.63
4976 5191 2.542550 TGATTTTCCTACCCACGAGGA 58.457 47.619 0.00 0.00 41.52 3.71
4977 5192 2.500098 TGATTTTCCTACCCACGAGGAG 59.500 50.000 0.00 0.00 43.99 3.69
4978 5193 0.611714 TTTTCCTACCCACGAGGAGC 59.388 55.000 0.00 0.00 43.99 4.70
4979 5194 1.262640 TTTCCTACCCACGAGGAGCC 61.263 60.000 0.00 0.00 43.99 4.70
4980 5195 3.155167 CCTACCCACGAGGAGCCC 61.155 72.222 0.00 0.00 39.89 5.19
4981 5196 3.155167 CTACCCACGAGGAGCCCC 61.155 72.222 0.00 0.00 39.89 5.80
4982 5197 3.976490 CTACCCACGAGGAGCCCCA 62.976 68.421 0.00 0.00 39.89 4.96
4983 5198 3.326385 TACCCACGAGGAGCCCCAT 62.326 63.158 0.00 0.00 39.89 4.00
4984 5199 2.833151 TACCCACGAGGAGCCCCATT 62.833 60.000 0.00 0.00 39.89 3.16
4985 5200 2.070039 CCCACGAGGAGCCCCATTA 61.070 63.158 0.00 0.00 38.24 1.90
4986 5201 1.146263 CCACGAGGAGCCCCATTAC 59.854 63.158 0.00 0.00 36.89 1.89
4987 5202 1.338136 CCACGAGGAGCCCCATTACT 61.338 60.000 0.00 0.00 36.89 2.24
4988 5203 0.105039 CACGAGGAGCCCCATTACTC 59.895 60.000 0.00 0.00 33.88 2.59
4989 5204 0.325296 ACGAGGAGCCCCATTACTCA 60.325 55.000 0.00 0.00 34.48 3.41
4990 5205 0.390860 CGAGGAGCCCCATTACTCAG 59.609 60.000 0.00 0.00 34.48 3.35
4991 5206 1.794714 GAGGAGCCCCATTACTCAGA 58.205 55.000 0.00 0.00 34.48 3.27
4992 5207 2.119495 GAGGAGCCCCATTACTCAGAA 58.881 52.381 0.00 0.00 34.48 3.02
4993 5208 2.103941 GAGGAGCCCCATTACTCAGAAG 59.896 54.545 0.00 0.00 34.48 2.85
4994 5209 1.141858 GGAGCCCCATTACTCAGAAGG 59.858 57.143 0.00 0.00 34.48 3.46
4995 5210 1.141858 GAGCCCCATTACTCAGAAGGG 59.858 57.143 0.00 0.00 39.29 3.95
4996 5211 1.213296 GCCCCATTACTCAGAAGGGA 58.787 55.000 0.00 0.00 42.25 4.20
4997 5212 1.141858 GCCCCATTACTCAGAAGGGAG 59.858 57.143 0.00 0.00 42.25 4.30
4998 5213 2.764269 CCCCATTACTCAGAAGGGAGA 58.236 52.381 0.00 0.00 42.25 3.71
4999 5214 2.436173 CCCCATTACTCAGAAGGGAGAC 59.564 54.545 0.00 0.00 42.25 3.36
5000 5215 3.107601 CCCATTACTCAGAAGGGAGACA 58.892 50.000 0.00 0.00 42.25 3.41
5001 5216 3.713764 CCCATTACTCAGAAGGGAGACAT 59.286 47.826 0.00 0.00 42.25 3.06
5002 5217 4.164988 CCCATTACTCAGAAGGGAGACATT 59.835 45.833 0.00 0.00 42.25 2.71
5014 5229 6.882768 AAGGGAGACATTCAGATTAGTCTT 57.117 37.500 0.00 0.00 41.10 3.01
5015 5230 7.979786 AAGGGAGACATTCAGATTAGTCTTA 57.020 36.000 0.00 0.00 41.10 2.10
5016 5231 8.560124 AAGGGAGACATTCAGATTAGTCTTAT 57.440 34.615 0.00 0.00 41.10 1.73
5017 5232 7.961351 AGGGAGACATTCAGATTAGTCTTATG 58.039 38.462 0.00 5.88 41.10 1.90
5018 5233 7.016072 AGGGAGACATTCAGATTAGTCTTATGG 59.984 40.741 10.20 0.00 41.10 2.74
5019 5234 7.015682 GGGAGACATTCAGATTAGTCTTATGGA 59.984 40.741 10.20 0.00 41.10 3.41
5020 5235 7.870445 GGAGACATTCAGATTAGTCTTATGGAC 59.130 40.741 10.20 0.00 41.10 4.02
5021 5236 8.311395 AGACATTCAGATTAGTCTTATGGACA 57.689 34.615 10.20 0.00 46.72 4.02
5022 5237 8.762645 AGACATTCAGATTAGTCTTATGGACAA 58.237 33.333 10.20 0.00 46.72 3.18
5023 5238 9.383519 GACATTCAGATTAGTCTTATGGACAAA 57.616 33.333 10.20 0.00 46.72 2.83
5024 5239 9.739276 ACATTCAGATTAGTCTTATGGACAAAA 57.261 29.630 10.20 0.00 46.72 2.44
5026 5241 8.792830 TTCAGATTAGTCTTATGGACAAAAGG 57.207 34.615 0.00 0.00 46.72 3.11
5027 5242 6.823689 TCAGATTAGTCTTATGGACAAAAGGC 59.176 38.462 0.00 0.00 46.72 4.35
5028 5243 6.038714 CAGATTAGTCTTATGGACAAAAGGCC 59.961 42.308 0.00 0.00 46.72 5.19
5029 5244 3.087370 AGTCTTATGGACAAAAGGCCC 57.913 47.619 0.00 0.00 46.72 5.80
5030 5245 1.743394 GTCTTATGGACAAAAGGCCCG 59.257 52.381 0.00 0.00 43.94 6.13
5031 5246 0.455815 CTTATGGACAAAAGGCCCGC 59.544 55.000 0.00 0.00 0.00 6.13
5032 5247 0.251386 TTATGGACAAAAGGCCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
5033 5248 0.679640 TATGGACAAAAGGCCCGCAG 60.680 55.000 0.00 0.00 0.00 5.18
5034 5249 4.056125 GGACAAAAGGCCCGCAGC 62.056 66.667 0.00 0.00 42.60 5.25
5035 5250 2.985847 GACAAAAGGCCCGCAGCT 60.986 61.111 0.00 0.00 43.05 4.24
5036 5251 2.982744 GACAAAAGGCCCGCAGCTC 61.983 63.158 0.00 0.00 43.05 4.09
5037 5252 4.107051 CAAAAGGCCCGCAGCTCG 62.107 66.667 0.00 0.00 43.05 5.03
5038 5253 4.643387 AAAAGGCCCGCAGCTCGT 62.643 61.111 0.00 0.00 43.05 4.18
5044 5259 2.357517 CCCGCAGCTCGTGAGTTT 60.358 61.111 0.00 0.00 36.19 2.66
5045 5260 2.383527 CCCGCAGCTCGTGAGTTTC 61.384 63.158 0.00 0.00 36.19 2.78
5046 5261 1.664649 CCGCAGCTCGTGAGTTTCA 60.665 57.895 0.00 0.00 36.19 2.69
5047 5262 1.016130 CCGCAGCTCGTGAGTTTCAT 61.016 55.000 0.00 0.00 36.19 2.57
5048 5263 0.094216 CGCAGCTCGTGAGTTTCATG 59.906 55.000 0.00 0.00 34.78 3.07
5049 5264 0.445436 GCAGCTCGTGAGTTTCATGG 59.555 55.000 0.00 0.00 34.27 3.66
5050 5265 1.081892 CAGCTCGTGAGTTTCATGGG 58.918 55.000 0.00 0.00 36.95 4.00
5052 5267 3.231734 CTCGTGAGTTTCATGGGCA 57.768 52.632 0.00 0.00 34.27 5.36
5053 5268 0.798776 CTCGTGAGTTTCATGGGCAC 59.201 55.000 0.00 0.00 34.27 5.01
5054 5269 0.396435 TCGTGAGTTTCATGGGCACT 59.604 50.000 0.00 0.00 34.27 4.40
5055 5270 1.202758 TCGTGAGTTTCATGGGCACTT 60.203 47.619 0.00 0.00 34.27 3.16
5056 5271 2.037902 TCGTGAGTTTCATGGGCACTTA 59.962 45.455 0.00 0.00 34.27 2.24
5057 5272 2.811431 CGTGAGTTTCATGGGCACTTAA 59.189 45.455 0.00 0.00 29.96 1.85
5058 5273 3.440173 CGTGAGTTTCATGGGCACTTAAT 59.560 43.478 0.00 0.00 29.96 1.40
5059 5274 4.634004 CGTGAGTTTCATGGGCACTTAATA 59.366 41.667 0.00 0.00 29.96 0.98
5060 5275 5.220662 CGTGAGTTTCATGGGCACTTAATAG 60.221 44.000 0.00 0.00 29.96 1.73
5061 5276 5.880332 GTGAGTTTCATGGGCACTTAATAGA 59.120 40.000 0.00 0.00 0.00 1.98
5062 5277 6.543831 GTGAGTTTCATGGGCACTTAATAGAT 59.456 38.462 0.00 0.00 0.00 1.98
5063 5278 6.767902 TGAGTTTCATGGGCACTTAATAGATC 59.232 38.462 0.00 0.00 0.00 2.75
5064 5279 5.760253 AGTTTCATGGGCACTTAATAGATCG 59.240 40.000 0.00 0.00 0.00 3.69
5065 5280 5.545063 TTCATGGGCACTTAATAGATCGA 57.455 39.130 0.00 0.00 0.00 3.59
5066 5281 5.545063 TCATGGGCACTTAATAGATCGAA 57.455 39.130 0.00 0.00 0.00 3.71
5067 5282 5.297547 TCATGGGCACTTAATAGATCGAAC 58.702 41.667 0.00 0.00 0.00 3.95
5068 5283 4.067972 TGGGCACTTAATAGATCGAACC 57.932 45.455 0.00 0.00 0.00 3.62
5069 5284 3.452990 TGGGCACTTAATAGATCGAACCA 59.547 43.478 0.00 0.00 0.00 3.67
5070 5285 4.058817 GGGCACTTAATAGATCGAACCAG 58.941 47.826 0.00 0.00 0.00 4.00
5071 5286 4.443034 GGGCACTTAATAGATCGAACCAGT 60.443 45.833 0.00 0.00 0.00 4.00
5072 5287 4.745620 GGCACTTAATAGATCGAACCAGTC 59.254 45.833 0.00 0.00 0.00 3.51
5073 5288 5.348986 GCACTTAATAGATCGAACCAGTCA 58.651 41.667 0.00 0.00 0.00 3.41
5074 5289 5.986135 GCACTTAATAGATCGAACCAGTCAT 59.014 40.000 0.00 0.00 0.00 3.06
5075 5290 6.480320 GCACTTAATAGATCGAACCAGTCATT 59.520 38.462 0.00 0.00 0.00 2.57
5076 5291 7.652105 GCACTTAATAGATCGAACCAGTCATTA 59.348 37.037 0.00 0.00 0.00 1.90
5077 5292 9.186323 CACTTAATAGATCGAACCAGTCATTAG 57.814 37.037 0.00 0.00 0.00 1.73
5078 5293 8.915036 ACTTAATAGATCGAACCAGTCATTAGT 58.085 33.333 0.00 0.00 0.00 2.24
5079 5294 9.751542 CTTAATAGATCGAACCAGTCATTAGTT 57.248 33.333 0.00 0.00 0.00 2.24
5082 5297 6.727824 AGATCGAACCAGTCATTAGTTTTG 57.272 37.500 0.00 0.00 0.00 2.44
5083 5298 4.742438 TCGAACCAGTCATTAGTTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
5084 5299 4.385825 TCGAACCAGTCATTAGTTTTGCT 58.614 39.130 0.00 0.00 0.00 3.91
5085 5300 4.451096 TCGAACCAGTCATTAGTTTTGCTC 59.549 41.667 0.00 0.00 0.00 4.26
5086 5301 4.666655 CGAACCAGTCATTAGTTTTGCTCG 60.667 45.833 0.00 0.00 0.00 5.03
5087 5302 3.740115 ACCAGTCATTAGTTTTGCTCGT 58.260 40.909 0.00 0.00 0.00 4.18
5088 5303 4.134563 ACCAGTCATTAGTTTTGCTCGTT 58.865 39.130 0.00 0.00 0.00 3.85
5089 5304 5.302360 ACCAGTCATTAGTTTTGCTCGTTA 58.698 37.500 0.00 0.00 0.00 3.18
5090 5305 5.761234 ACCAGTCATTAGTTTTGCTCGTTAA 59.239 36.000 0.00 0.00 0.00 2.01
5091 5306 6.430000 ACCAGTCATTAGTTTTGCTCGTTAAT 59.570 34.615 0.00 0.00 0.00 1.40
5092 5307 7.604927 ACCAGTCATTAGTTTTGCTCGTTAATA 59.395 33.333 0.00 0.00 0.00 0.98
5093 5308 7.903431 CCAGTCATTAGTTTTGCTCGTTAATAC 59.097 37.037 0.00 0.00 0.00 1.89
5094 5309 8.656849 CAGTCATTAGTTTTGCTCGTTAATACT 58.343 33.333 0.00 0.00 0.00 2.12
5095 5310 8.870879 AGTCATTAGTTTTGCTCGTTAATACTC 58.129 33.333 0.00 0.00 0.00 2.59
5096 5311 8.114905 GTCATTAGTTTTGCTCGTTAATACTCC 58.885 37.037 0.00 0.00 0.00 3.85
5097 5312 6.973229 TTAGTTTTGCTCGTTAATACTCCC 57.027 37.500 0.00 0.00 0.00 4.30
5098 5313 5.161943 AGTTTTGCTCGTTAATACTCCCT 57.838 39.130 0.00 0.00 0.00 4.20
5099 5314 4.935808 AGTTTTGCTCGTTAATACTCCCTG 59.064 41.667 0.00 0.00 0.00 4.45
5100 5315 2.596904 TGCTCGTTAATACTCCCTGC 57.403 50.000 0.00 0.00 0.00 4.85
5101 5316 1.202371 TGCTCGTTAATACTCCCTGCG 60.202 52.381 0.00 0.00 0.00 5.18
5102 5317 1.202382 GCTCGTTAATACTCCCTGCGT 60.202 52.381 0.00 0.00 0.00 5.24
5103 5318 2.033801 GCTCGTTAATACTCCCTGCGTA 59.966 50.000 0.00 0.00 0.00 4.42
5104 5319 3.625938 CTCGTTAATACTCCCTGCGTAC 58.374 50.000 0.00 0.00 0.00 3.67
5105 5320 2.358898 TCGTTAATACTCCCTGCGTACC 59.641 50.000 0.00 0.00 0.00 3.34
5106 5321 2.360165 CGTTAATACTCCCTGCGTACCT 59.640 50.000 0.00 0.00 0.00 3.08
5107 5322 3.565482 CGTTAATACTCCCTGCGTACCTA 59.435 47.826 0.00 0.00 0.00 3.08
5108 5323 4.036734 CGTTAATACTCCCTGCGTACCTAA 59.963 45.833 0.00 0.00 0.00 2.69
5109 5324 5.450412 CGTTAATACTCCCTGCGTACCTAAA 60.450 44.000 0.00 0.00 0.00 1.85
5110 5325 6.519382 GTTAATACTCCCTGCGTACCTAAAT 58.481 40.000 0.00 0.00 0.00 1.40
5111 5326 7.522073 CGTTAATACTCCCTGCGTACCTAAATA 60.522 40.741 0.00 0.00 0.00 1.40
5112 5327 6.930068 AATACTCCCTGCGTACCTAAATAT 57.070 37.500 0.00 0.00 0.00 1.28
5113 5328 9.532494 TTAATACTCCCTGCGTACCTAAATATA 57.468 33.333 0.00 0.00 0.00 0.86
5114 5329 8.605325 AATACTCCCTGCGTACCTAAATATAT 57.395 34.615 0.00 0.00 0.00 0.86
5115 5330 6.282199 ACTCCCTGCGTACCTAAATATATG 57.718 41.667 0.00 0.00 0.00 1.78
5116 5331 5.778750 ACTCCCTGCGTACCTAAATATATGT 59.221 40.000 0.00 0.00 0.00 2.29
5117 5332 6.071503 ACTCCCTGCGTACCTAAATATATGTC 60.072 42.308 0.00 0.00 0.00 3.06
5118 5333 5.776208 TCCCTGCGTACCTAAATATATGTCA 59.224 40.000 0.00 0.00 0.00 3.58
5119 5334 6.439375 TCCCTGCGTACCTAAATATATGTCAT 59.561 38.462 0.00 0.00 0.00 3.06
5120 5335 7.038587 TCCCTGCGTACCTAAATATATGTCATT 60.039 37.037 0.00 0.00 0.00 2.57
5121 5336 7.606456 CCCTGCGTACCTAAATATATGTCATTT 59.394 37.037 0.00 0.00 0.00 2.32
5122 5337 8.999431 CCTGCGTACCTAAATATATGTCATTTT 58.001 33.333 0.00 0.00 0.00 1.82
5149 5364 9.890915 AGAGATTCTAATATGAACTACTCCCTT 57.109 33.333 0.00 0.00 31.26 3.95
5151 5366 8.798402 AGATTCTAATATGAACTACTCCCTTCG 58.202 37.037 0.00 0.00 0.00 3.79
5152 5367 7.893124 TTCTAATATGAACTACTCCCTTCGT 57.107 36.000 0.00 0.00 0.00 3.85
5153 5368 8.985315 TTCTAATATGAACTACTCCCTTCGTA 57.015 34.615 0.00 0.00 0.00 3.43
5154 5369 8.985315 TCTAATATGAACTACTCCCTTCGTAA 57.015 34.615 0.00 0.00 0.00 3.18
5155 5370 9.412460 TCTAATATGAACTACTCCCTTCGTAAA 57.588 33.333 0.00 0.00 0.00 2.01
5201 5416 5.947443 ACTAAAGTAGTGATCTAAACGCGT 58.053 37.500 5.58 5.58 37.69 6.01
5202 5417 7.076842 ACTAAAGTAGTGATCTAAACGCGTA 57.923 36.000 14.46 0.00 37.69 4.42
5203 5418 7.701445 ACTAAAGTAGTGATCTAAACGCGTAT 58.299 34.615 14.46 0.68 37.69 3.06
5204 5419 8.830580 ACTAAAGTAGTGATCTAAACGCGTATA 58.169 33.333 14.46 0.00 37.69 1.47
5205 5420 9.823098 CTAAAGTAGTGATCTAAACGCGTATAT 57.177 33.333 14.46 4.53 0.00 0.86
5207 5422 9.525409 AAAGTAGTGATCTAAACGCGTATATTT 57.475 29.630 14.46 5.49 0.00 1.40
5208 5423 9.525409 AAGTAGTGATCTAAACGCGTATATTTT 57.475 29.630 14.46 5.04 0.00 1.82
5209 5424 9.525409 AGTAGTGATCTAAACGCGTATATTTTT 57.475 29.630 14.46 4.16 0.00 1.94
5233 5448 8.652810 TTTTATAAAGGGAGTACATACGAAGC 57.347 34.615 0.00 0.00 0.00 3.86
5234 5449 5.864418 ATAAAGGGAGTACATACGAAGCA 57.136 39.130 0.00 0.00 0.00 3.91
5235 5450 4.546829 AAAGGGAGTACATACGAAGCAA 57.453 40.909 0.00 0.00 0.00 3.91
5236 5451 4.546829 AAGGGAGTACATACGAAGCAAA 57.453 40.909 0.00 0.00 0.00 3.68
5237 5452 4.546829 AGGGAGTACATACGAAGCAAAA 57.453 40.909 0.00 0.00 0.00 2.44
5238 5453 5.099042 AGGGAGTACATACGAAGCAAAAT 57.901 39.130 0.00 0.00 0.00 1.82
5239 5454 4.876107 AGGGAGTACATACGAAGCAAAATG 59.124 41.667 0.00 0.00 0.00 2.32
5240 5455 4.873827 GGGAGTACATACGAAGCAAAATGA 59.126 41.667 0.00 0.00 0.00 2.57
5241 5456 5.006746 GGGAGTACATACGAAGCAAAATGAG 59.993 44.000 0.00 0.00 0.00 2.90
5242 5457 5.581085 GGAGTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
5243 5458 6.408858 AGTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
5244 5459 6.163476 AGTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
5245 5460 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
5246 5461 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
5247 5462 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
5248 5463 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
5249 5464 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
5250 5465 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
5251 5466 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
5252 5467 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
5266 5481 8.976353 AGTGAATCTACACTCTGAAATATGTCT 58.024 33.333 0.00 0.00 46.36 3.41
5340 5555 7.718334 TTAGAAATGGAGAGAGTACATCACA 57.282 36.000 0.00 0.00 0.00 3.58
5341 5556 6.611613 AGAAATGGAGAGAGTACATCACAA 57.388 37.500 0.00 0.00 0.00 3.33
5342 5557 7.192852 AGAAATGGAGAGAGTACATCACAAT 57.807 36.000 0.00 0.00 0.00 2.71
5343 5558 8.311395 AGAAATGGAGAGAGTACATCACAATA 57.689 34.615 0.00 0.00 0.00 1.90
5344 5559 8.932610 AGAAATGGAGAGAGTACATCACAATAT 58.067 33.333 0.00 0.00 0.00 1.28
5400 5615 6.829229 TTTAGAAACGGAGAGAGTACATCA 57.171 37.500 0.00 0.00 0.00 3.07
5401 5616 4.705337 AGAAACGGAGAGAGTACATCAC 57.295 45.455 0.00 0.00 0.00 3.06
5402 5617 4.079970 AGAAACGGAGAGAGTACATCACA 58.920 43.478 0.00 0.00 0.00 3.58
5403 5618 4.523173 AGAAACGGAGAGAGTACATCACAA 59.477 41.667 0.00 0.00 0.00 3.33
5404 5619 5.186021 AGAAACGGAGAGAGTACATCACAAT 59.814 40.000 0.00 0.00 0.00 2.71
5405 5620 6.377429 AGAAACGGAGAGAGTACATCACAATA 59.623 38.462 0.00 0.00 0.00 1.90
5406 5621 6.716934 AACGGAGAGAGTACATCACAATAT 57.283 37.500 0.00 0.00 0.00 1.28
5407 5622 7.818997 AACGGAGAGAGTACATCACAATATA 57.181 36.000 0.00 0.00 0.00 0.86
5408 5623 8.410673 AACGGAGAGAGTACATCACAATATAT 57.589 34.615 0.00 0.00 0.00 0.86
5409 5624 9.516546 AACGGAGAGAGTACATCACAATATATA 57.483 33.333 0.00 0.00 0.00 0.86
5410 5625 9.688091 ACGGAGAGAGTACATCACAATATATAT 57.312 33.333 0.00 0.00 0.00 0.86
5435 5650 9.846248 ATCTTTCATCTTAAGTAACAACATTGC 57.154 29.630 1.63 0.00 0.00 3.56
5436 5651 8.845227 TCTTTCATCTTAAGTAACAACATTGCA 58.155 29.630 1.63 0.00 0.00 4.08
5437 5652 9.630098 CTTTCATCTTAAGTAACAACATTGCAT 57.370 29.630 1.63 0.00 0.00 3.96
5438 5653 8.969121 TTCATCTTAAGTAACAACATTGCATG 57.031 30.769 1.63 0.00 0.00 4.06
5439 5654 8.334263 TCATCTTAAGTAACAACATTGCATGA 57.666 30.769 1.63 0.00 0.00 3.07
5440 5655 8.236586 TCATCTTAAGTAACAACATTGCATGAC 58.763 33.333 1.63 0.00 0.00 3.06
5441 5656 7.744087 TCTTAAGTAACAACATTGCATGACT 57.256 32.000 1.63 0.00 0.00 3.41
5442 5657 7.806690 TCTTAAGTAACAACATTGCATGACTC 58.193 34.615 1.63 0.00 0.00 3.36
5443 5658 5.376854 AAGTAACAACATTGCATGACTCC 57.623 39.130 0.00 0.00 0.00 3.85
5444 5659 2.995466 AACAACATTGCATGACTCCG 57.005 45.000 0.00 0.00 0.00 4.63
5445 5660 1.896220 ACAACATTGCATGACTCCGT 58.104 45.000 0.00 0.00 0.00 4.69
5446 5661 2.229792 ACAACATTGCATGACTCCGTT 58.770 42.857 0.00 0.00 0.00 4.44
5447 5662 2.622942 ACAACATTGCATGACTCCGTTT 59.377 40.909 0.00 0.00 0.00 3.60
5448 5663 2.981805 CAACATTGCATGACTCCGTTTG 59.018 45.455 0.00 0.00 0.00 2.93
5449 5664 2.229792 ACATTGCATGACTCCGTTTGT 58.770 42.857 0.00 0.00 0.00 2.83
5450 5665 2.622942 ACATTGCATGACTCCGTTTGTT 59.377 40.909 0.00 0.00 0.00 2.83
5451 5666 3.068024 ACATTGCATGACTCCGTTTGTTT 59.932 39.130 0.00 0.00 0.00 2.83
5452 5667 2.772568 TGCATGACTCCGTTTGTTTG 57.227 45.000 0.00 0.00 0.00 2.93
5453 5668 2.020720 TGCATGACTCCGTTTGTTTGT 58.979 42.857 0.00 0.00 0.00 2.83
5454 5669 2.425312 TGCATGACTCCGTTTGTTTGTT 59.575 40.909 0.00 0.00 0.00 2.83
5455 5670 3.119316 TGCATGACTCCGTTTGTTTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
5456 5671 3.862845 GCATGACTCCGTTTGTTTGTTTT 59.137 39.130 0.00 0.00 0.00 2.43
5457 5672 4.328712 GCATGACTCCGTTTGTTTGTTTTT 59.671 37.500 0.00 0.00 0.00 1.94
5482 5697 9.804758 TTTTAAAAACGACATTTCATAACACCT 57.195 25.926 0.00 0.00 0.00 4.00
5483 5698 9.453325 TTTAAAAACGACATTTCATAACACCTC 57.547 29.630 0.00 0.00 0.00 3.85
5484 5699 6.627395 AAAACGACATTTCATAACACCTCA 57.373 33.333 0.00 0.00 0.00 3.86
5485 5700 6.627395 AAACGACATTTCATAACACCTCAA 57.373 33.333 0.00 0.00 0.00 3.02
5486 5701 5.607119 ACGACATTTCATAACACCTCAAC 57.393 39.130 0.00 0.00 0.00 3.18
5487 5702 4.454504 ACGACATTTCATAACACCTCAACC 59.545 41.667 0.00 0.00 0.00 3.77
5488 5703 4.695455 CGACATTTCATAACACCTCAACCT 59.305 41.667 0.00 0.00 0.00 3.50
5489 5704 5.872617 CGACATTTCATAACACCTCAACCTA 59.127 40.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.600255 GATGGTCCCATAAGACGGCG 60.600 60.000 4.80 4.80 37.66 6.46
1 2 0.759346 AGATGGTCCCATAAGACGGC 59.241 55.000 0.00 0.00 37.66 5.68
2 3 1.344763 GGAGATGGTCCCATAAGACGG 59.655 57.143 0.00 0.00 39.88 4.79
3 4 2.821991 GGAGATGGTCCCATAAGACG 57.178 55.000 0.00 0.00 39.88 4.18
29 30 0.745845 ATGCTTGCCATCACGAGGAC 60.746 55.000 0.00 0.00 0.00 3.85
59 60 2.501261 TCACCTCTACCATCGATACCG 58.499 52.381 0.00 0.00 37.07 4.02
77 78 3.071479 GTTAGCACGAAGGATGGTTTCA 58.929 45.455 0.00 0.00 0.00 2.69
102 103 6.903883 TTTTGTCTGACTGTTAGAAGTGAC 57.096 37.500 9.51 0.00 0.00 3.67
173 175 1.083706 ACCAGGGGAGATGAAGGCT 59.916 57.895 0.00 0.00 0.00 4.58
217 220 3.693085 TCAGCATCTTCAATTTCTGGCTC 59.307 43.478 0.00 0.00 0.00 4.70
238 242 6.589907 GGTTGTTTGGATCATTTGGTATGTTC 59.410 38.462 0.00 0.00 0.00 3.18
241 245 5.046735 TGGGTTGTTTGGATCATTTGGTATG 60.047 40.000 0.00 0.00 0.00 2.39
242 246 5.090139 TGGGTTGTTTGGATCATTTGGTAT 58.910 37.500 0.00 0.00 0.00 2.73
243 247 4.483950 TGGGTTGTTTGGATCATTTGGTA 58.516 39.130 0.00 0.00 0.00 3.25
244 248 3.312890 TGGGTTGTTTGGATCATTTGGT 58.687 40.909 0.00 0.00 0.00 3.67
245 249 4.064388 GTTGGGTTGTTTGGATCATTTGG 58.936 43.478 0.00 0.00 0.00 3.28
246 250 4.701765 TGTTGGGTTGTTTGGATCATTTG 58.298 39.130 0.00 0.00 0.00 2.32
247 251 5.565455 ATGTTGGGTTGTTTGGATCATTT 57.435 34.783 0.00 0.00 0.00 2.32
248 252 5.163216 ACAATGTTGGGTTGTTTGGATCATT 60.163 36.000 0.00 0.00 36.44 2.57
249 253 4.347583 ACAATGTTGGGTTGTTTGGATCAT 59.652 37.500 0.00 0.00 36.44 2.45
250 254 3.708631 ACAATGTTGGGTTGTTTGGATCA 59.291 39.130 0.00 0.00 36.44 2.92
251 255 4.306600 GACAATGTTGGGTTGTTTGGATC 58.693 43.478 0.00 0.00 39.72 3.36
252 256 3.070878 GGACAATGTTGGGTTGTTTGGAT 59.929 43.478 0.00 0.00 39.72 3.41
253 257 2.432510 GGACAATGTTGGGTTGTTTGGA 59.567 45.455 0.00 0.00 39.72 3.53
254 258 2.169352 TGGACAATGTTGGGTTGTTTGG 59.831 45.455 0.00 0.00 39.72 3.28
274 278 8.579863 CCCTAATTTAATTTGGCTCCTCTTATG 58.420 37.037 11.67 0.00 34.42 1.90
298 302 3.882888 TCTTGTTGTGTCACTGAATTCCC 59.117 43.478 2.27 0.00 0.00 3.97
315 319 6.688073 TCCTCTCTTTAGTGGAATTCTTGT 57.312 37.500 5.23 0.00 41.37 3.16
326 330 3.236896 TGGTCGGTTTCCTCTCTTTAGT 58.763 45.455 0.00 0.00 0.00 2.24
485 492 6.069905 TGGAAGGAAAATAGTACTATGTGCCA 60.070 38.462 26.39 17.86 31.74 4.92
732 740 3.041469 GCTGAGCAAGGGGAGGGAG 62.041 68.421 0.00 0.00 0.00 4.30
740 748 3.123620 GCACGGAGCTGAGCAAGG 61.124 66.667 7.39 0.00 41.15 3.61
892 900 0.583438 CAACACACACGGCTCAGAAG 59.417 55.000 0.00 0.00 0.00 2.85
893 901 0.107897 ACAACACACACGGCTCAGAA 60.108 50.000 0.00 0.00 0.00 3.02
894 902 0.107897 AACAACACACACGGCTCAGA 60.108 50.000 0.00 0.00 0.00 3.27
895 903 0.732571 AAACAACACACACGGCTCAG 59.267 50.000 0.00 0.00 0.00 3.35
896 904 1.131504 GAAAACAACACACACGGCTCA 59.868 47.619 0.00 0.00 0.00 4.26
897 905 1.400494 AGAAAACAACACACACGGCTC 59.600 47.619 0.00 0.00 0.00 4.70
898 906 1.459450 AGAAAACAACACACACGGCT 58.541 45.000 0.00 0.00 0.00 5.52
947 955 2.736343 AAACGCGCCGCCTTTTTACC 62.736 55.000 5.73 0.00 0.00 2.85
949 957 1.370657 CAAACGCGCCGCCTTTTTA 60.371 52.632 5.73 0.00 0.00 1.52
1631 1640 6.485313 ACTTGATGTGAAATACCGTTGAAGAA 59.515 34.615 0.00 0.00 0.00 2.52
1688 1697 6.732896 AGTAGTGTACTAAATCCTCCCATG 57.267 41.667 0.00 0.00 37.23 3.66
1761 1783 7.228590 ACTGTCTAACCTATCTGAGACCTATC 58.771 42.308 0.00 0.00 38.01 2.08
1762 1784 7.156694 ACTGTCTAACCTATCTGAGACCTAT 57.843 40.000 0.00 0.00 38.01 2.57
1763 1785 6.578313 ACTGTCTAACCTATCTGAGACCTA 57.422 41.667 0.00 0.00 38.01 3.08
1984 2006 0.321210 TTTCCTTCGATCTTGCCGCA 60.321 50.000 0.00 0.00 0.00 5.69
2080 2102 4.525996 TGCATACCTGTAGCAATGACAAT 58.474 39.130 0.00 0.00 34.97 2.71
2151 2173 3.476552 TCCTTAGCCGCATCCAAAATAG 58.523 45.455 0.00 0.00 0.00 1.73
2152 2174 3.569194 TCCTTAGCCGCATCCAAAATA 57.431 42.857 0.00 0.00 0.00 1.40
2355 2392 2.593346 ATGACAGAAGATCTCCACGC 57.407 50.000 0.00 0.00 0.00 5.34
2429 2466 6.779115 TGCCACTTGTGCTAATTATATACG 57.221 37.500 0.00 0.00 0.00 3.06
2587 2624 6.844388 AGTGGTACCTCAATATTATCACTCCA 59.156 38.462 14.36 0.00 0.00 3.86
2618 2655 1.484240 GAGACCAGCCAACTAGCTCAT 59.516 52.381 0.00 0.00 42.61 2.90
2621 2658 1.277557 CTTGAGACCAGCCAACTAGCT 59.722 52.381 0.00 0.00 46.45 3.32
2632 2669 9.720874 ATCTATAATGGATATAGCTTGAGACCA 57.279 33.333 0.00 0.00 42.19 4.02
2658 2695 3.887621 ACCATCTCTAGTTTTAGCGCA 57.112 42.857 11.47 0.00 0.00 6.09
2661 2698 5.929415 GCTCCATACCATCTCTAGTTTTAGC 59.071 44.000 0.00 0.00 0.00 3.09
2668 2705 3.894427 AGTGTGCTCCATACCATCTCTAG 59.106 47.826 0.00 0.00 0.00 2.43
2794 2831 6.972328 TGCAGAAGTACTTTAAGCAAGTTTTG 59.028 34.615 20.93 0.00 43.89 2.44
3071 3108 5.183228 TGTAATAGTTGCTACCTTCCTTGC 58.817 41.667 0.00 0.00 0.00 4.01
3154 3191 1.122227 ACAGCCAAAAACTGCACCAT 58.878 45.000 0.00 0.00 38.79 3.55
3217 3254 7.360861 GCACACAGAAAATGCATGTAGTACTAA 60.361 37.037 3.61 0.00 39.23 2.24
3280 3321 4.621034 GGTTTGCACTGTTTTTATCATCCG 59.379 41.667 0.00 0.00 0.00 4.18
3426 3467 2.242043 CAAGTTGAGGGCAAATCCAGT 58.758 47.619 0.00 0.00 35.42 4.00
3447 3488 5.468409 TGAATGCAGTAAATTTGACTGACGA 59.532 36.000 16.75 1.52 46.01 4.20
3501 3546 5.414765 ACCAAGTATCTTCATCCCGAAAAAC 59.585 40.000 0.00 0.00 31.71 2.43
3507 3553 4.770795 AGAAACCAAGTATCTTCATCCCG 58.229 43.478 0.00 0.00 0.00 5.14
3524 3570 7.693969 ATAAATAGAGCATGGGCATAGAAAC 57.306 36.000 0.00 0.00 44.61 2.78
3607 3654 4.285517 CCACTGGTATCTCTCTGGCATATT 59.714 45.833 0.00 0.00 0.00 1.28
3608 3655 3.837146 CCACTGGTATCTCTCTGGCATAT 59.163 47.826 0.00 0.00 0.00 1.78
3712 3761 6.165577 CAACCAAATTTAGGGGTCAGAAATG 58.834 40.000 10.25 0.00 32.67 2.32
3719 3768 4.157246 AGAACCAACCAAATTTAGGGGTC 58.843 43.478 10.25 8.40 32.67 4.46
3748 3797 7.835822 TGTACACCTAATAACGCCTAGTTTTA 58.164 34.615 0.00 0.00 43.86 1.52
3829 3997 3.425162 AACCCACAACTGAGATCTTCC 57.575 47.619 0.00 0.00 0.00 3.46
3886 4058 9.058174 TCATTGACATCGTAAAGTTCCTTTTAA 57.942 29.630 0.00 0.00 35.21 1.52
3922 4094 9.155975 AGTATAGACTAGATGCACAAAGTTTTG 57.844 33.333 0.00 3.17 37.94 2.44
3993 4165 8.077836 AGAGAGATAAAACTGAAAGAAACGTG 57.922 34.615 0.00 0.00 37.43 4.49
3995 4167 8.983724 AGAAGAGAGATAAAACTGAAAGAAACG 58.016 33.333 0.00 0.00 37.43 3.60
4019 4196 7.283127 GGCATGAATGAGAATAAAGGTGTAAGA 59.717 37.037 0.00 0.00 0.00 2.10
4048 4226 1.518325 TTCCCTTGTGTACGTGCATG 58.482 50.000 10.21 3.82 0.00 4.06
4081 4259 9.594478 GAGGAAAAAGGAATGTTAAGAAAACAA 57.406 29.630 0.00 0.00 33.42 2.83
4094 4272 3.160269 CTGCACCAGAGGAAAAAGGAAT 58.840 45.455 0.00 0.00 32.44 3.01
4225 4403 0.388520 GGTTGCTTCCGAATTGGTGC 60.389 55.000 0.00 1.55 39.52 5.01
4263 4441 0.743701 CAGAGACTGCATGGACTGGC 60.744 60.000 0.00 0.00 0.00 4.85
4359 4537 4.586235 GCTGCTGGTGGTGGTGGT 62.586 66.667 0.00 0.00 0.00 4.16
4360 4538 4.584518 TGCTGCTGGTGGTGGTGG 62.585 66.667 0.00 0.00 0.00 4.61
4361 4539 2.981909 CTGCTGCTGGTGGTGGTG 60.982 66.667 0.00 0.00 0.00 4.17
4459 4640 2.367202 GCCTCCCGATGACTTCCCA 61.367 63.158 0.00 0.00 0.00 4.37
4480 4661 3.559171 GGACCTAGTTGTTTCAGATGCCA 60.559 47.826 0.00 0.00 0.00 4.92
4504 4685 2.415512 CGCGCATCATCATCATCATCTT 59.584 45.455 8.75 0.00 0.00 2.40
4525 4724 0.179001 ACACCAAAGCCACTACACCC 60.179 55.000 0.00 0.00 0.00 4.61
4577 4776 2.298729 TGTCAACACCTGTGATCGATCA 59.701 45.455 23.99 23.99 0.00 2.92
4609 4808 1.214367 ACAACTACAGACAAACGCCG 58.786 50.000 0.00 0.00 0.00 6.46
4742 4941 7.217447 CCTGAGTTTAAGTTAACAACAACAACG 59.783 37.037 8.61 0.00 0.00 4.10
4820 5024 1.548269 GTTCCAGCACTCTAGCAGTCT 59.452 52.381 0.00 0.00 36.85 3.24
4826 5030 7.094205 ACAAATAAAATGGTTCCAGCACTCTAG 60.094 37.037 0.00 0.00 0.00 2.43
4828 5032 5.539955 ACAAATAAAATGGTTCCAGCACTCT 59.460 36.000 0.00 0.00 0.00 3.24
4829 5033 5.783111 ACAAATAAAATGGTTCCAGCACTC 58.217 37.500 0.00 0.00 0.00 3.51
4857 5061 3.136443 TCACTGGAACCAAGAGACAACAT 59.864 43.478 0.00 0.00 0.00 2.71
4858 5062 2.503765 TCACTGGAACCAAGAGACAACA 59.496 45.455 0.00 0.00 0.00 3.33
4865 5069 2.957402 AATGCTCACTGGAACCAAGA 57.043 45.000 0.00 0.00 0.00 3.02
4866 5070 3.645884 CAAAATGCTCACTGGAACCAAG 58.354 45.455 0.00 0.00 0.00 3.61
4908 5123 8.498054 TTTGTAGAGAAAATAGGAGCATGAAG 57.502 34.615 0.00 0.00 0.00 3.02
4909 5124 9.113838 GATTTGTAGAGAAAATAGGAGCATGAA 57.886 33.333 0.00 0.00 0.00 2.57
4910 5125 7.716998 GGATTTGTAGAGAAAATAGGAGCATGA 59.283 37.037 0.00 0.00 0.00 3.07
4911 5126 7.500227 TGGATTTGTAGAGAAAATAGGAGCATG 59.500 37.037 0.00 0.00 0.00 4.06
4945 5160 7.179516 GTGGGTAGGAAAATCATCCCTTAAAAA 59.820 37.037 0.00 0.00 40.59 1.94
4958 5173 1.209747 GCTCCTCGTGGGTAGGAAAAT 59.790 52.381 3.23 0.00 42.56 1.82
4964 5179 3.155167 GGGGCTCCTCGTGGGTAG 61.155 72.222 0.00 0.00 36.25 3.18
4970 5185 0.325296 TGAGTAATGGGGCTCCTCGT 60.325 55.000 3.07 0.00 0.00 4.18
4971 5186 0.390860 CTGAGTAATGGGGCTCCTCG 59.609 60.000 3.07 0.00 0.00 4.63
4972 5187 1.794714 TCTGAGTAATGGGGCTCCTC 58.205 55.000 3.07 0.00 0.00 3.71
4973 5188 2.122768 CTTCTGAGTAATGGGGCTCCT 58.877 52.381 3.07 0.00 0.00 3.69
4974 5189 1.141858 CCTTCTGAGTAATGGGGCTCC 59.858 57.143 0.00 0.00 0.00 4.70
4975 5190 1.141858 CCCTTCTGAGTAATGGGGCTC 59.858 57.143 0.00 0.00 34.46 4.70
4976 5191 1.216990 CCCTTCTGAGTAATGGGGCT 58.783 55.000 0.00 0.00 34.46 5.19
4977 5192 1.141858 CTCCCTTCTGAGTAATGGGGC 59.858 57.143 0.00 0.00 38.43 5.80
4978 5193 2.436173 GTCTCCCTTCTGAGTAATGGGG 59.564 54.545 0.00 0.00 38.43 4.96
4979 5194 3.107601 TGTCTCCCTTCTGAGTAATGGG 58.892 50.000 0.00 0.00 39.22 4.00
4980 5195 5.104776 TGAATGTCTCCCTTCTGAGTAATGG 60.105 44.000 0.00 0.00 33.93 3.16
4981 5196 5.982356 TGAATGTCTCCCTTCTGAGTAATG 58.018 41.667 0.00 0.00 33.93 1.90
4982 5197 5.960811 TCTGAATGTCTCCCTTCTGAGTAAT 59.039 40.000 0.00 0.00 33.93 1.89
4983 5198 5.333581 TCTGAATGTCTCCCTTCTGAGTAA 58.666 41.667 0.00 0.00 33.93 2.24
4984 5199 4.935578 TCTGAATGTCTCCCTTCTGAGTA 58.064 43.478 0.00 0.00 33.93 2.59
4985 5200 3.784178 TCTGAATGTCTCCCTTCTGAGT 58.216 45.455 0.00 0.00 33.93 3.41
4986 5201 5.356291 AATCTGAATGTCTCCCTTCTGAG 57.644 43.478 0.00 0.00 34.29 3.35
4987 5202 5.960811 ACTAATCTGAATGTCTCCCTTCTGA 59.039 40.000 0.00 0.00 34.97 3.27
4988 5203 6.098124 AGACTAATCTGAATGTCTCCCTTCTG 59.902 42.308 5.24 0.00 35.13 3.02
4989 5204 6.201591 AGACTAATCTGAATGTCTCCCTTCT 58.798 40.000 5.24 0.00 35.13 2.85
4990 5205 6.478512 AGACTAATCTGAATGTCTCCCTTC 57.521 41.667 5.24 0.00 35.13 3.46
4991 5206 6.882768 AAGACTAATCTGAATGTCTCCCTT 57.117 37.500 9.74 0.00 38.63 3.95
4992 5207 7.016072 CCATAAGACTAATCTGAATGTCTCCCT 59.984 40.741 9.74 1.04 38.63 4.20
4993 5208 7.015682 TCCATAAGACTAATCTGAATGTCTCCC 59.984 40.741 9.74 0.00 38.63 4.30
4994 5209 7.870445 GTCCATAAGACTAATCTGAATGTCTCC 59.130 40.741 9.74 0.00 42.69 3.71
4995 5210 8.417106 TGTCCATAAGACTAATCTGAATGTCTC 58.583 37.037 9.74 0.94 46.46 3.36
4996 5211 8.311395 TGTCCATAAGACTAATCTGAATGTCT 57.689 34.615 5.24 5.24 46.46 3.41
4997 5212 8.948631 TTGTCCATAAGACTAATCTGAATGTC 57.051 34.615 0.00 0.00 46.46 3.06
4998 5213 9.739276 TTTTGTCCATAAGACTAATCTGAATGT 57.261 29.630 0.00 0.00 46.46 2.71
5000 5215 9.401058 CCTTTTGTCCATAAGACTAATCTGAAT 57.599 33.333 0.00 0.00 46.46 2.57
5001 5216 7.336931 GCCTTTTGTCCATAAGACTAATCTGAA 59.663 37.037 0.00 0.00 46.46 3.02
5002 5217 6.823689 GCCTTTTGTCCATAAGACTAATCTGA 59.176 38.462 0.00 0.00 46.46 3.27
5003 5218 6.038714 GGCCTTTTGTCCATAAGACTAATCTG 59.961 42.308 0.00 0.00 46.46 2.90
5004 5219 6.122964 GGCCTTTTGTCCATAAGACTAATCT 58.877 40.000 0.00 0.00 46.46 2.40
5005 5220 5.299531 GGGCCTTTTGTCCATAAGACTAATC 59.700 44.000 0.84 0.00 46.46 1.75
5006 5221 5.201243 GGGCCTTTTGTCCATAAGACTAAT 58.799 41.667 0.84 0.00 46.46 1.73
5007 5222 4.595986 GGGCCTTTTGTCCATAAGACTAA 58.404 43.478 0.84 0.00 46.46 2.24
5008 5223 3.370103 CGGGCCTTTTGTCCATAAGACTA 60.370 47.826 0.84 0.00 46.46 2.59
5009 5224 2.618045 CGGGCCTTTTGTCCATAAGACT 60.618 50.000 0.84 0.00 46.46 3.24
5010 5225 1.743394 CGGGCCTTTTGTCCATAAGAC 59.257 52.381 0.84 0.00 46.51 3.01
5011 5226 1.953311 GCGGGCCTTTTGTCCATAAGA 60.953 52.381 0.84 0.00 0.00 2.10
5012 5227 0.455815 GCGGGCCTTTTGTCCATAAG 59.544 55.000 0.84 0.00 0.00 1.73
5013 5228 0.251386 TGCGGGCCTTTTGTCCATAA 60.251 50.000 0.84 0.00 0.00 1.90
5014 5229 0.679640 CTGCGGGCCTTTTGTCCATA 60.680 55.000 0.84 0.00 0.00 2.74
5015 5230 1.978617 CTGCGGGCCTTTTGTCCAT 60.979 57.895 0.84 0.00 0.00 3.41
5016 5231 2.597217 CTGCGGGCCTTTTGTCCA 60.597 61.111 0.84 0.00 0.00 4.02
5017 5232 4.056125 GCTGCGGGCCTTTTGTCC 62.056 66.667 0.84 0.00 34.27 4.02
5018 5233 2.982744 GAGCTGCGGGCCTTTTGTC 61.983 63.158 0.84 0.00 43.05 3.18
5019 5234 2.985847 GAGCTGCGGGCCTTTTGT 60.986 61.111 0.84 0.00 43.05 2.83
5020 5235 4.107051 CGAGCTGCGGGCCTTTTG 62.107 66.667 0.84 0.00 43.05 2.44
5021 5236 4.643387 ACGAGCTGCGGGCCTTTT 62.643 61.111 0.84 0.00 46.49 2.27
5028 5243 1.016130 ATGAAACTCACGAGCTGCGG 61.016 55.000 0.00 0.00 46.49 5.69
5030 5245 0.445436 CCATGAAACTCACGAGCTGC 59.555 55.000 0.00 0.00 0.00 5.25
5031 5246 1.081892 CCCATGAAACTCACGAGCTG 58.918 55.000 0.00 0.00 0.00 4.24
5032 5247 0.674895 GCCCATGAAACTCACGAGCT 60.675 55.000 0.00 0.00 0.00 4.09
5033 5248 0.955428 TGCCCATGAAACTCACGAGC 60.955 55.000 0.00 0.00 0.00 5.03
5034 5249 0.798776 GTGCCCATGAAACTCACGAG 59.201 55.000 0.00 0.00 0.00 4.18
5035 5250 0.396435 AGTGCCCATGAAACTCACGA 59.604 50.000 0.00 0.00 33.28 4.35
5036 5251 1.238439 AAGTGCCCATGAAACTCACG 58.762 50.000 0.00 0.00 33.28 4.35
5037 5252 5.880332 TCTATTAAGTGCCCATGAAACTCAC 59.120 40.000 0.00 0.00 0.00 3.51
5038 5253 6.061022 TCTATTAAGTGCCCATGAAACTCA 57.939 37.500 0.00 0.00 0.00 3.41
5039 5254 6.073548 CGATCTATTAAGTGCCCATGAAACTC 60.074 42.308 0.00 0.00 0.00 3.01
5040 5255 5.760253 CGATCTATTAAGTGCCCATGAAACT 59.240 40.000 0.00 0.00 0.00 2.66
5041 5256 5.758296 TCGATCTATTAAGTGCCCATGAAAC 59.242 40.000 0.00 0.00 0.00 2.78
5042 5257 5.924356 TCGATCTATTAAGTGCCCATGAAA 58.076 37.500 0.00 0.00 0.00 2.69
5043 5258 5.545063 TCGATCTATTAAGTGCCCATGAA 57.455 39.130 0.00 0.00 0.00 2.57
5044 5259 5.297547 GTTCGATCTATTAAGTGCCCATGA 58.702 41.667 0.00 0.00 0.00 3.07
5045 5260 4.452455 GGTTCGATCTATTAAGTGCCCATG 59.548 45.833 0.00 0.00 0.00 3.66
5046 5261 4.102524 TGGTTCGATCTATTAAGTGCCCAT 59.897 41.667 0.00 0.00 0.00 4.00
5047 5262 3.452990 TGGTTCGATCTATTAAGTGCCCA 59.547 43.478 0.00 0.00 0.00 5.36
5048 5263 4.058817 CTGGTTCGATCTATTAAGTGCCC 58.941 47.826 0.00 0.00 0.00 5.36
5049 5264 4.694339 ACTGGTTCGATCTATTAAGTGCC 58.306 43.478 0.00 0.00 0.00 5.01
5050 5265 5.348986 TGACTGGTTCGATCTATTAAGTGC 58.651 41.667 0.00 0.00 0.00 4.40
5051 5266 9.186323 CTAATGACTGGTTCGATCTATTAAGTG 57.814 37.037 0.00 0.00 0.00 3.16
5052 5267 8.915036 ACTAATGACTGGTTCGATCTATTAAGT 58.085 33.333 0.00 0.00 0.00 2.24
5053 5268 9.751542 AACTAATGACTGGTTCGATCTATTAAG 57.248 33.333 0.00 0.00 0.00 1.85
5056 5271 8.883731 CAAAACTAATGACTGGTTCGATCTATT 58.116 33.333 0.00 0.00 0.00 1.73
5057 5272 7.011482 GCAAAACTAATGACTGGTTCGATCTAT 59.989 37.037 0.00 0.00 0.00 1.98
5058 5273 6.312918 GCAAAACTAATGACTGGTTCGATCTA 59.687 38.462 0.00 0.00 0.00 1.98
5059 5274 5.122396 GCAAAACTAATGACTGGTTCGATCT 59.878 40.000 0.00 0.00 0.00 2.75
5060 5275 5.122396 AGCAAAACTAATGACTGGTTCGATC 59.878 40.000 0.00 0.00 0.00 3.69
5061 5276 5.003804 AGCAAAACTAATGACTGGTTCGAT 58.996 37.500 0.00 0.00 0.00 3.59
5062 5277 4.385825 AGCAAAACTAATGACTGGTTCGA 58.614 39.130 0.00 0.00 0.00 3.71
5063 5278 4.666655 CGAGCAAAACTAATGACTGGTTCG 60.667 45.833 0.00 0.00 0.00 3.95
5064 5279 4.213482 ACGAGCAAAACTAATGACTGGTTC 59.787 41.667 0.00 0.00 0.00 3.62
5065 5280 4.134563 ACGAGCAAAACTAATGACTGGTT 58.865 39.130 0.00 0.00 0.00 3.67
5066 5281 3.740115 ACGAGCAAAACTAATGACTGGT 58.260 40.909 0.00 0.00 0.00 4.00
5067 5282 4.749245 AACGAGCAAAACTAATGACTGG 57.251 40.909 0.00 0.00 0.00 4.00
5068 5283 8.656849 AGTATTAACGAGCAAAACTAATGACTG 58.343 33.333 0.00 0.00 0.00 3.51
5069 5284 8.773404 AGTATTAACGAGCAAAACTAATGACT 57.227 30.769 0.00 0.00 0.00 3.41
5070 5285 8.114905 GGAGTATTAACGAGCAAAACTAATGAC 58.885 37.037 0.00 0.00 0.00 3.06
5071 5286 7.279313 GGGAGTATTAACGAGCAAAACTAATGA 59.721 37.037 0.00 0.00 0.00 2.57
5072 5287 7.280205 AGGGAGTATTAACGAGCAAAACTAATG 59.720 37.037 0.00 0.00 0.00 1.90
5073 5288 7.280205 CAGGGAGTATTAACGAGCAAAACTAAT 59.720 37.037 0.00 0.00 0.00 1.73
5074 5289 6.592607 CAGGGAGTATTAACGAGCAAAACTAA 59.407 38.462 0.00 0.00 0.00 2.24
5075 5290 6.103997 CAGGGAGTATTAACGAGCAAAACTA 58.896 40.000 0.00 0.00 0.00 2.24
5076 5291 4.935808 CAGGGAGTATTAACGAGCAAAACT 59.064 41.667 0.00 0.00 0.00 2.66
5077 5292 4.436986 GCAGGGAGTATTAACGAGCAAAAC 60.437 45.833 0.00 0.00 0.00 2.43
5078 5293 3.687698 GCAGGGAGTATTAACGAGCAAAA 59.312 43.478 0.00 0.00 0.00 2.44
5079 5294 3.267483 GCAGGGAGTATTAACGAGCAAA 58.733 45.455 0.00 0.00 0.00 3.68
5080 5295 2.737359 CGCAGGGAGTATTAACGAGCAA 60.737 50.000 0.00 0.00 0.00 3.91
5081 5296 1.202371 CGCAGGGAGTATTAACGAGCA 60.202 52.381 0.00 0.00 0.00 4.26
5082 5297 1.202382 ACGCAGGGAGTATTAACGAGC 60.202 52.381 0.00 0.00 0.00 5.03
5083 5298 2.865343 ACGCAGGGAGTATTAACGAG 57.135 50.000 0.00 0.00 0.00 4.18
5084 5299 2.358898 GGTACGCAGGGAGTATTAACGA 59.641 50.000 0.00 0.00 0.00 3.85
5085 5300 2.360165 AGGTACGCAGGGAGTATTAACG 59.640 50.000 0.00 0.00 0.00 3.18
5086 5301 5.520376 TTAGGTACGCAGGGAGTATTAAC 57.480 43.478 0.00 0.00 0.00 2.01
5087 5302 6.736110 ATTTAGGTACGCAGGGAGTATTAA 57.264 37.500 0.00 0.00 0.00 1.40
5088 5303 9.705103 ATATATTTAGGTACGCAGGGAGTATTA 57.295 33.333 0.00 0.00 0.00 0.98
5089 5304 6.930068 ATATTTAGGTACGCAGGGAGTATT 57.070 37.500 0.00 0.00 0.00 1.89
5090 5305 7.618512 ACATATATTTAGGTACGCAGGGAGTAT 59.381 37.037 0.00 0.00 0.00 2.12
5091 5306 6.950041 ACATATATTTAGGTACGCAGGGAGTA 59.050 38.462 0.00 0.00 0.00 2.59
5092 5307 5.778750 ACATATATTTAGGTACGCAGGGAGT 59.221 40.000 0.00 0.00 0.00 3.85
5093 5308 6.071560 TGACATATATTTAGGTACGCAGGGAG 60.072 42.308 0.00 0.00 0.00 4.30
5094 5309 5.776208 TGACATATATTTAGGTACGCAGGGA 59.224 40.000 0.00 0.00 0.00 4.20
5095 5310 6.032956 TGACATATATTTAGGTACGCAGGG 57.967 41.667 0.00 0.00 0.00 4.45
5096 5311 8.547967 AAATGACATATATTTAGGTACGCAGG 57.452 34.615 0.00 0.00 0.00 4.85
5123 5338 9.890915 AAGGGAGTAGTTCATATTAGAATCTCT 57.109 33.333 0.00 0.00 0.00 3.10
5125 5340 8.798402 CGAAGGGAGTAGTTCATATTAGAATCT 58.202 37.037 0.00 0.00 0.00 2.40
5126 5341 8.578151 ACGAAGGGAGTAGTTCATATTAGAATC 58.422 37.037 0.00 0.00 0.00 2.52
5127 5342 8.480133 ACGAAGGGAGTAGTTCATATTAGAAT 57.520 34.615 0.00 0.00 0.00 2.40
5128 5343 7.893124 ACGAAGGGAGTAGTTCATATTAGAA 57.107 36.000 0.00 0.00 0.00 2.10
5129 5344 8.985315 TTACGAAGGGAGTAGTTCATATTAGA 57.015 34.615 0.00 0.00 0.00 2.10
5178 5393 5.947443 ACGCGTTTAGATCACTACTTTAGT 58.053 37.500 5.58 0.00 40.28 2.24
5179 5394 9.823098 ATATACGCGTTTAGATCACTACTTTAG 57.177 33.333 20.78 0.00 0.00 1.85
5181 5396 9.525409 AAATATACGCGTTTAGATCACTACTTT 57.475 29.630 20.78 5.25 0.00 2.66
5182 5397 9.525409 AAAATATACGCGTTTAGATCACTACTT 57.475 29.630 20.78 0.00 0.00 2.24
5183 5398 9.525409 AAAAATATACGCGTTTAGATCACTACT 57.475 29.630 20.78 0.00 0.00 2.57
5207 5422 9.101655 GCTTCGTATGTACTCCCTTTATAAAAA 57.898 33.333 0.00 0.00 0.00 1.94
5208 5423 8.259411 TGCTTCGTATGTACTCCCTTTATAAAA 58.741 33.333 0.00 0.00 0.00 1.52
5209 5424 7.784037 TGCTTCGTATGTACTCCCTTTATAAA 58.216 34.615 0.00 0.00 0.00 1.40
5210 5425 7.350744 TGCTTCGTATGTACTCCCTTTATAA 57.649 36.000 0.00 0.00 0.00 0.98
5211 5426 6.964807 TGCTTCGTATGTACTCCCTTTATA 57.035 37.500 0.00 0.00 0.00 0.98
5212 5427 5.864418 TGCTTCGTATGTACTCCCTTTAT 57.136 39.130 0.00 0.00 0.00 1.40
5213 5428 5.664294 TTGCTTCGTATGTACTCCCTTTA 57.336 39.130 0.00 0.00 0.00 1.85
5214 5429 4.546829 TTGCTTCGTATGTACTCCCTTT 57.453 40.909 0.00 0.00 0.00 3.11
5215 5430 4.546829 TTTGCTTCGTATGTACTCCCTT 57.453 40.909 0.00 0.00 0.00 3.95
5216 5431 4.546829 TTTTGCTTCGTATGTACTCCCT 57.453 40.909 0.00 0.00 0.00 4.20
5217 5432 4.873827 TCATTTTGCTTCGTATGTACTCCC 59.126 41.667 0.00 0.00 0.00 4.30
5218 5433 5.581085 ACTCATTTTGCTTCGTATGTACTCC 59.419 40.000 0.00 0.00 0.00 3.85
5219 5434 6.310467 TCACTCATTTTGCTTCGTATGTACTC 59.690 38.462 0.00 0.00 0.00 2.59
5220 5435 6.163476 TCACTCATTTTGCTTCGTATGTACT 58.837 36.000 0.00 0.00 0.00 2.73
5221 5436 6.403333 TCACTCATTTTGCTTCGTATGTAC 57.597 37.500 0.00 0.00 0.00 2.90
5222 5437 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
5223 5438 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
5224 5439 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
5225 5440 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
5226 5441 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
5227 5442 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
5228 5443 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
5229 5444 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
5314 5529 8.762645 TGTGATGTACTCTCTCCATTTCTAAAT 58.237 33.333 0.00 0.00 0.00 1.40
5315 5530 8.134202 TGTGATGTACTCTCTCCATTTCTAAA 57.866 34.615 0.00 0.00 0.00 1.85
5316 5531 7.718334 TGTGATGTACTCTCTCCATTTCTAA 57.282 36.000 0.00 0.00 0.00 2.10
5317 5532 7.718334 TTGTGATGTACTCTCTCCATTTCTA 57.282 36.000 0.00 0.00 0.00 2.10
5318 5533 6.611613 TTGTGATGTACTCTCTCCATTTCT 57.388 37.500 0.00 0.00 0.00 2.52
5374 5589 9.132923 TGATGTACTCTCTCCGTTTCTAAATAT 57.867 33.333 0.00 0.00 0.00 1.28
5375 5590 8.404000 GTGATGTACTCTCTCCGTTTCTAAATA 58.596 37.037 0.00 0.00 0.00 1.40
5376 5591 7.093902 TGTGATGTACTCTCTCCGTTTCTAAAT 60.094 37.037 0.00 0.00 0.00 1.40
5377 5592 6.208007 TGTGATGTACTCTCTCCGTTTCTAAA 59.792 38.462 0.00 0.00 0.00 1.85
5378 5593 5.708697 TGTGATGTACTCTCTCCGTTTCTAA 59.291 40.000 0.00 0.00 0.00 2.10
5379 5594 5.250982 TGTGATGTACTCTCTCCGTTTCTA 58.749 41.667 0.00 0.00 0.00 2.10
5380 5595 4.079970 TGTGATGTACTCTCTCCGTTTCT 58.920 43.478 0.00 0.00 0.00 2.52
5381 5596 4.436242 TGTGATGTACTCTCTCCGTTTC 57.564 45.455 0.00 0.00 0.00 2.78
5382 5597 4.866508 TTGTGATGTACTCTCTCCGTTT 57.133 40.909 0.00 0.00 0.00 3.60
5383 5598 6.716934 ATATTGTGATGTACTCTCTCCGTT 57.283 37.500 0.00 0.00 0.00 4.44
5384 5599 9.688091 ATATATATTGTGATGTACTCTCTCCGT 57.312 33.333 0.00 0.00 0.00 4.69
5409 5624 9.846248 GCAATGTTGTTACTTAAGATGAAAGAT 57.154 29.630 10.09 0.21 0.00 2.40
5410 5625 8.845227 TGCAATGTTGTTACTTAAGATGAAAGA 58.155 29.630 10.09 0.00 0.00 2.52
5411 5626 9.630098 ATGCAATGTTGTTACTTAAGATGAAAG 57.370 29.630 10.09 0.00 0.00 2.62
5412 5627 9.409312 CATGCAATGTTGTTACTTAAGATGAAA 57.591 29.630 10.09 0.00 40.20 2.69
5413 5628 8.791675 TCATGCAATGTTGTTACTTAAGATGAA 58.208 29.630 10.09 0.00 46.80 2.57
5414 5629 8.236586 GTCATGCAATGTTGTTACTTAAGATGA 58.763 33.333 10.09 0.19 46.80 2.92
5415 5630 8.239314 AGTCATGCAATGTTGTTACTTAAGATG 58.761 33.333 10.09 0.00 46.80 2.90
5416 5631 8.340618 AGTCATGCAATGTTGTTACTTAAGAT 57.659 30.769 10.09 0.00 46.80 2.40
5417 5632 7.094805 GGAGTCATGCAATGTTGTTACTTAAGA 60.095 37.037 10.09 0.00 46.80 2.10
5418 5633 7.023575 GGAGTCATGCAATGTTGTTACTTAAG 58.976 38.462 0.00 0.00 46.80 1.85
5419 5634 6.348132 CGGAGTCATGCAATGTTGTTACTTAA 60.348 38.462 0.00 0.00 46.80 1.85
5420 5635 5.121611 CGGAGTCATGCAATGTTGTTACTTA 59.878 40.000 0.00 0.00 46.80 2.24
5421 5636 4.083324 CGGAGTCATGCAATGTTGTTACTT 60.083 41.667 0.00 0.00 46.80 2.24
5422 5637 3.436704 CGGAGTCATGCAATGTTGTTACT 59.563 43.478 0.00 0.00 46.80 2.24
5423 5638 3.188460 ACGGAGTCATGCAATGTTGTTAC 59.812 43.478 0.00 0.00 46.80 2.50
5424 5639 3.407698 ACGGAGTCATGCAATGTTGTTA 58.592 40.909 0.00 0.00 46.80 2.41
5425 5640 2.229792 ACGGAGTCATGCAATGTTGTT 58.770 42.857 0.00 0.00 46.80 2.83
5426 5641 1.896220 ACGGAGTCATGCAATGTTGT 58.104 45.000 0.00 0.00 46.80 3.32
5427 5642 2.981805 CAAACGGAGTCATGCAATGTTG 59.018 45.455 0.00 0.00 45.00 3.33
5428 5643 2.622942 ACAAACGGAGTCATGCAATGTT 59.377 40.909 0.00 0.00 45.00 2.71
5429 5644 2.229792 ACAAACGGAGTCATGCAATGT 58.770 42.857 0.00 0.00 45.00 2.71
5430 5645 2.995466 ACAAACGGAGTCATGCAATG 57.005 45.000 0.00 0.00 45.00 2.82
5431 5646 3.068024 ACAAACAAACGGAGTCATGCAAT 59.932 39.130 0.00 0.00 45.00 3.56
5432 5647 2.425312 ACAAACAAACGGAGTCATGCAA 59.575 40.909 0.00 0.00 45.00 4.08
5433 5648 2.020720 ACAAACAAACGGAGTCATGCA 58.979 42.857 0.00 0.00 45.00 3.96
5434 5649 2.774439 ACAAACAAACGGAGTCATGC 57.226 45.000 0.00 0.00 45.00 4.06
5456 5671 9.804758 AGGTGTTATGAAATGTCGTTTTTAAAA 57.195 25.926 0.00 0.00 0.00 1.52
5457 5672 9.453325 GAGGTGTTATGAAATGTCGTTTTTAAA 57.547 29.630 0.00 0.00 0.00 1.52
5458 5673 8.622157 TGAGGTGTTATGAAATGTCGTTTTTAA 58.378 29.630 0.00 0.00 0.00 1.52
5459 5674 8.155821 TGAGGTGTTATGAAATGTCGTTTTTA 57.844 30.769 0.00 0.00 0.00 1.52
5460 5675 7.033530 TGAGGTGTTATGAAATGTCGTTTTT 57.966 32.000 0.00 0.00 0.00 1.94
5461 5676 6.627395 TGAGGTGTTATGAAATGTCGTTTT 57.373 33.333 0.00 0.00 0.00 2.43
5462 5677 6.435428 GTTGAGGTGTTATGAAATGTCGTTT 58.565 36.000 0.00 0.00 0.00 3.60
5463 5678 5.048991 GGTTGAGGTGTTATGAAATGTCGTT 60.049 40.000 0.00 0.00 0.00 3.85
5464 5679 4.454504 GGTTGAGGTGTTATGAAATGTCGT 59.545 41.667 0.00 0.00 0.00 4.34
5465 5680 4.695455 AGGTTGAGGTGTTATGAAATGTCG 59.305 41.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.