Multiple sequence alignment - TraesCS5B01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G301800 chr5B 100.000 2468 0 0 1 2468 486284347 486281880 0.000000e+00 4558
1 TraesCS5B01G301800 chr5B 85.816 564 53 20 851 1407 530609242 530609785 7.660000e-160 573
2 TraesCS5B01G301800 chr5B 96.552 319 11 0 1086 1404 535715415 535715097 1.680000e-146 529
3 TraesCS5B01G301800 chr5B 83.652 575 70 21 846 1414 530613355 530613911 1.010000e-143 520
4 TraesCS5B01G301800 chr5B 90.884 362 28 5 217 578 255926862 255926506 4.770000e-132 481
5 TraesCS5B01G301800 chr5B 75.909 220 46 5 1 217 281063255 281063470 3.360000e-19 106
6 TraesCS5B01G301800 chr5D 88.718 975 80 20 763 1727 405335028 405334074 0.000000e+00 1164
7 TraesCS5B01G301800 chr5D 97.196 321 8 1 1086 1405 331842146 331841826 2.160000e-150 542
8 TraesCS5B01G301800 chr5D 84.359 569 64 17 846 1408 436578266 436578815 3.610000e-148 534
9 TraesCS5B01G301800 chr5D 89.069 247 11 8 2234 2468 405333569 405333327 2.400000e-75 292
10 TraesCS5B01G301800 chr5D 79.817 218 39 5 13 228 355673785 355673571 1.180000e-33 154
11 TraesCS5B01G301800 chr5D 77.895 190 38 4 10 197 84261519 84261706 5.580000e-22 115
12 TraesCS5B01G301800 chr5A 87.324 994 77 27 747 1726 509043329 509044287 0.000000e+00 1092
13 TraesCS5B01G301800 chr5A 87.781 401 34 7 1767 2166 509044478 509044864 2.890000e-124 455
14 TraesCS5B01G301800 chr5A 90.588 170 6 8 2299 2461 509045402 509045568 1.490000e-52 217
15 TraesCS5B01G301800 chr5A 79.290 169 31 4 31 197 64983442 64983276 5.580000e-22 115
16 TraesCS5B01G301800 chr2B 96.866 351 10 1 217 567 264580163 264579814 9.830000e-164 586
17 TraesCS5B01G301800 chr4D 94.118 357 21 0 214 570 301291706 301292062 6.000000e-151 544
18 TraesCS5B01G301800 chr4D 77.273 220 47 3 2 219 363703775 363703993 2.580000e-25 126
19 TraesCS5B01G301800 chr1A 97.444 313 8 0 1090 1402 541460785 541460473 3.610000e-148 534
20 TraesCS5B01G301800 chr1A 96.552 319 11 0 1090 1408 543928365 543928683 1.680000e-146 529
21 TraesCS5B01G301800 chr1A 92.857 266 18 1 304 569 483647236 483646972 3.850000e-103 385
22 TraesCS5B01G301800 chr1A 94.898 98 5 0 214 311 483647602 483647505 1.180000e-33 154
23 TraesCS5B01G301800 chr7B 96.845 317 10 0 1088 1404 589740527 589740211 4.670000e-147 531
24 TraesCS5B01G301800 chr7B 92.938 354 25 0 214 567 679501658 679502011 1.310000e-142 516
25 TraesCS5B01G301800 chr1D 96.238 319 12 0 1090 1408 447757003 447757321 7.820000e-145 523
26 TraesCS5B01G301800 chr6B 91.877 357 29 0 214 570 423004507 423004863 1.320000e-137 499
27 TraesCS5B01G301800 chr6B 90.756 357 26 3 214 570 423006303 423005954 1.030000e-128 470
28 TraesCS5B01G301800 chr2D 79.452 219 40 5 2 217 573910172 573910388 1.530000e-32 150
29 TraesCS5B01G301800 chr3A 80.899 178 26 7 32 205 81667486 81667313 1.540000e-27 134
30 TraesCS5B01G301800 chr7D 77.828 221 43 4 1 218 393608264 393608481 5.540000e-27 132
31 TraesCS5B01G301800 chr3B 76.168 214 44 5 3 213 36027240 36027031 3.360000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G301800 chr5B 486281880 486284347 2467 True 4558.0 4558 100.000000 1 2468 1 chr5B.!!$R2 2467
1 TraesCS5B01G301800 chr5B 530609242 530613911 4669 False 546.5 573 84.734000 846 1414 2 chr5B.!!$F2 568
2 TraesCS5B01G301800 chr5D 405333327 405335028 1701 True 728.0 1164 88.893500 763 2468 2 chr5D.!!$R3 1705
3 TraesCS5B01G301800 chr5D 436578266 436578815 549 False 534.0 534 84.359000 846 1408 1 chr5D.!!$F2 562
4 TraesCS5B01G301800 chr5A 509043329 509045568 2239 False 588.0 1092 88.564333 747 2461 3 chr5A.!!$F1 1714
5 TraesCS5B01G301800 chr1A 483646972 483647602 630 True 269.5 385 93.877500 214 569 2 chr1A.!!$R2 355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 871 0.037326 GCTTGTCGGACCTGATGACA 60.037 55.0 5.55 0.0 40.62 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 3275 0.031994 GGGCAAACGACACTGCAATT 59.968 50.0 0.0 0.0 40.46 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.791069 GGCGGGTCAGGGGGAGTA 62.791 72.222 0.00 0.00 0.00 2.59
18 19 3.155167 GCGGGTCAGGGGGAGTAG 61.155 72.222 0.00 0.00 0.00 2.57
19 20 2.363361 CGGGTCAGGGGGAGTAGT 59.637 66.667 0.00 0.00 0.00 2.73
20 21 1.305887 CGGGTCAGGGGGAGTAGTT 60.306 63.158 0.00 0.00 0.00 2.24
21 22 1.614241 CGGGTCAGGGGGAGTAGTTG 61.614 65.000 0.00 0.00 0.00 3.16
22 23 1.272554 GGGTCAGGGGGAGTAGTTGG 61.273 65.000 0.00 0.00 0.00 3.77
23 24 1.602771 GTCAGGGGGAGTAGTTGGC 59.397 63.158 0.00 0.00 0.00 4.52
24 25 1.987855 TCAGGGGGAGTAGTTGGCG 60.988 63.158 0.00 0.00 0.00 5.69
25 26 3.400054 AGGGGGAGTAGTTGGCGC 61.400 66.667 0.00 0.00 0.00 6.53
26 27 4.832608 GGGGGAGTAGTTGGCGCG 62.833 72.222 0.00 0.00 0.00 6.86
28 29 4.452733 GGGAGTAGTTGGCGCGCT 62.453 66.667 32.29 14.07 0.00 5.92
29 30 2.434359 GGAGTAGTTGGCGCGCTT 60.434 61.111 32.29 16.31 0.00 4.68
30 31 2.453638 GGAGTAGTTGGCGCGCTTC 61.454 63.158 32.29 20.26 0.00 3.86
31 32 2.789203 GAGTAGTTGGCGCGCTTCG 61.789 63.158 32.29 0.00 42.12 3.79
53 54 4.735132 CGTCCGTGCCGTGTCCAT 62.735 66.667 0.00 0.00 0.00 3.41
54 55 3.118454 GTCCGTGCCGTGTCCATG 61.118 66.667 0.00 0.00 0.00 3.66
58 59 2.983030 GTGCCGTGTCCATGCCAA 60.983 61.111 0.00 0.00 0.00 4.52
59 60 2.983030 TGCCGTGTCCATGCCAAC 60.983 61.111 0.00 0.00 0.00 3.77
60 61 4.101790 GCCGTGTCCATGCCAACG 62.102 66.667 5.58 5.58 35.85 4.10
62 63 2.358125 CGTGTCCATGCCAACGGA 60.358 61.111 4.84 0.00 32.55 4.69
63 64 1.963855 CGTGTCCATGCCAACGGAA 60.964 57.895 4.84 0.00 31.67 4.30
64 65 1.511318 CGTGTCCATGCCAACGGAAA 61.511 55.000 4.84 0.00 31.67 3.13
65 66 0.887933 GTGTCCATGCCAACGGAAAT 59.112 50.000 0.00 0.00 31.67 2.17
66 67 0.887247 TGTCCATGCCAACGGAAATG 59.113 50.000 0.00 0.00 31.67 2.32
67 68 1.173043 GTCCATGCCAACGGAAATGA 58.827 50.000 0.00 0.00 31.67 2.57
68 69 1.133025 GTCCATGCCAACGGAAATGAG 59.867 52.381 0.00 0.00 31.67 2.90
69 70 0.457035 CCATGCCAACGGAAATGAGG 59.543 55.000 0.00 0.00 0.00 3.86
70 71 0.179129 CATGCCAACGGAAATGAGGC 60.179 55.000 0.00 0.00 45.41 4.70
71 72 0.323725 ATGCCAACGGAAATGAGGCT 60.324 50.000 0.00 0.00 45.42 4.58
72 73 0.326595 TGCCAACGGAAATGAGGCTA 59.673 50.000 0.00 0.00 45.42 3.93
73 74 1.271652 TGCCAACGGAAATGAGGCTAA 60.272 47.619 0.00 0.00 45.42 3.09
74 75 1.816224 GCCAACGGAAATGAGGCTAAA 59.184 47.619 0.00 0.00 42.01 1.85
75 76 2.230266 GCCAACGGAAATGAGGCTAAAA 59.770 45.455 0.00 0.00 42.01 1.52
76 77 3.305744 GCCAACGGAAATGAGGCTAAAAA 60.306 43.478 0.00 0.00 42.01 1.94
99 100 4.218722 CGAAAATGGGTCGGGAGG 57.781 61.111 0.00 0.00 34.85 4.30
100 101 2.112815 CGAAAATGGGTCGGGAGGC 61.113 63.158 0.00 0.00 34.85 4.70
101 102 2.045340 AAAATGGGTCGGGAGGCG 60.045 61.111 0.00 0.00 33.19 5.52
102 103 3.638592 AAAATGGGTCGGGAGGCGG 62.639 63.158 0.00 0.00 33.19 6.13
108 109 4.060038 GTCGGGAGGCGGACGAAA 62.060 66.667 0.00 0.00 38.46 3.46
109 110 3.072468 TCGGGAGGCGGACGAAAT 61.072 61.111 0.00 0.00 33.21 2.17
110 111 2.585247 CGGGAGGCGGACGAAATC 60.585 66.667 0.00 0.00 0.00 2.17
111 112 2.901042 GGGAGGCGGACGAAATCT 59.099 61.111 0.00 0.00 0.00 2.40
112 113 1.521681 GGGAGGCGGACGAAATCTG 60.522 63.158 0.00 0.00 36.68 2.90
113 114 1.515954 GGAGGCGGACGAAATCTGA 59.484 57.895 0.00 0.00 35.44 3.27
114 115 0.806492 GGAGGCGGACGAAATCTGAC 60.806 60.000 0.00 0.00 43.02 3.51
115 116 3.384927 GGCGGACGAAATCTGACG 58.615 61.111 0.00 0.00 35.44 4.35
116 117 2.695646 GCGGACGAAATCTGACGC 59.304 61.111 0.00 0.00 40.19 5.19
117 118 2.987593 CGGACGAAATCTGACGCG 59.012 61.111 3.53 3.53 35.44 6.01
118 119 2.695646 GGACGAAATCTGACGCGC 59.304 61.111 5.73 0.00 0.00 6.86
119 120 2.313374 GACGAAATCTGACGCGCG 59.687 61.111 30.96 30.96 0.00 6.86
120 121 2.430244 ACGAAATCTGACGCGCGT 60.430 55.556 38.52 38.52 0.00 6.01
121 122 2.313374 CGAAATCTGACGCGCGTC 59.687 61.111 46.11 46.11 44.77 5.19
136 137 4.974989 GTCCGTTTGGGTCGGCGT 62.975 66.667 6.85 0.00 46.49 5.68
137 138 4.973055 TCCGTTTGGGTCGGCGTG 62.973 66.667 6.85 0.00 46.49 5.34
139 140 3.273834 CGTTTGGGTCGGCGTGTT 61.274 61.111 6.85 0.00 0.00 3.32
140 141 2.330041 GTTTGGGTCGGCGTGTTG 59.670 61.111 6.85 0.00 0.00 3.33
141 142 2.902846 TTTGGGTCGGCGTGTTGG 60.903 61.111 6.85 0.00 0.00 3.77
142 143 3.402095 TTTGGGTCGGCGTGTTGGA 62.402 57.895 6.85 0.00 0.00 3.53
143 144 4.612412 TGGGTCGGCGTGTTGGAC 62.612 66.667 6.85 0.00 0.00 4.02
149 150 3.663202 GGCGTGTTGGACCGAATT 58.337 55.556 0.00 0.00 0.00 2.17
150 151 1.953772 GGCGTGTTGGACCGAATTT 59.046 52.632 0.00 0.00 0.00 1.82
151 152 0.312729 GGCGTGTTGGACCGAATTTT 59.687 50.000 0.00 0.00 0.00 1.82
152 153 1.664874 GGCGTGTTGGACCGAATTTTC 60.665 52.381 0.00 0.00 0.00 2.29
153 154 1.265905 GCGTGTTGGACCGAATTTTCT 59.734 47.619 0.00 0.00 0.00 2.52
154 155 2.916111 CGTGTTGGACCGAATTTTCTG 58.084 47.619 0.00 0.00 0.00 3.02
155 156 2.289547 CGTGTTGGACCGAATTTTCTGT 59.710 45.455 0.00 0.00 0.00 3.41
156 157 3.606153 CGTGTTGGACCGAATTTTCTGTC 60.606 47.826 6.38 6.38 39.68 3.51
159 160 0.446616 GGACCGAATTTTCTGTCCGC 59.553 55.000 15.28 0.00 46.61 5.54
160 161 0.446616 GACCGAATTTTCTGTCCGCC 59.553 55.000 4.14 0.00 36.00 6.13
161 162 1.296056 ACCGAATTTTCTGTCCGCCG 61.296 55.000 0.00 0.00 0.00 6.46
162 163 1.226018 CGAATTTTCTGTCCGCCGC 60.226 57.895 0.00 0.00 0.00 6.53
163 164 1.226018 GAATTTTCTGTCCGCCGCG 60.226 57.895 5.59 5.59 0.00 6.46
164 165 1.632046 GAATTTTCTGTCCGCCGCGA 61.632 55.000 15.93 0.00 0.00 5.87
165 166 1.024579 AATTTTCTGTCCGCCGCGAT 61.025 50.000 15.93 0.00 0.00 4.58
166 167 1.024579 ATTTTCTGTCCGCCGCGATT 61.025 50.000 15.93 0.00 0.00 3.34
167 168 1.632046 TTTTCTGTCCGCCGCGATTC 61.632 55.000 15.93 4.66 0.00 2.52
168 169 2.773397 TTTCTGTCCGCCGCGATTCA 62.773 55.000 15.93 9.10 0.00 2.57
169 170 2.773397 TTCTGTCCGCCGCGATTCAA 62.773 55.000 15.93 0.00 0.00 2.69
170 171 2.357638 TGTCCGCCGCGATTCAAA 60.358 55.556 15.93 0.00 0.00 2.69
171 172 2.097728 GTCCGCCGCGATTCAAAC 59.902 61.111 15.93 0.00 0.00 2.93
172 173 3.483665 TCCGCCGCGATTCAAACG 61.484 61.111 15.93 0.00 0.00 3.60
177 178 2.275812 CGCGATTCAAACGGACGC 60.276 61.111 0.00 0.00 44.64 5.19
178 179 2.097728 GCGATTCAAACGGACGCC 59.902 61.111 0.00 0.00 42.79 5.68
179 180 2.782615 CGATTCAAACGGACGCCC 59.217 61.111 0.00 0.00 0.00 6.13
189 190 2.512057 GGACGCCCGCGGATAAAA 60.512 61.111 30.73 0.00 44.69 1.52
190 191 1.890510 GGACGCCCGCGGATAAAAT 60.891 57.895 30.73 5.22 44.69 1.82
191 192 1.278637 GACGCCCGCGGATAAAATG 59.721 57.895 30.73 9.14 44.69 2.32
192 193 1.153329 ACGCCCGCGGATAAAATGA 60.153 52.632 30.73 0.00 44.69 2.57
193 194 1.157870 ACGCCCGCGGATAAAATGAG 61.158 55.000 30.73 12.38 44.69 2.90
194 195 1.157870 CGCCCGCGGATAAAATGAGT 61.158 55.000 30.73 0.00 35.56 3.41
195 196 0.586802 GCCCGCGGATAAAATGAGTC 59.413 55.000 30.73 0.00 0.00 3.36
196 197 0.859232 CCCGCGGATAAAATGAGTCG 59.141 55.000 30.73 0.00 0.00 4.18
197 198 0.859232 CCGCGGATAAAATGAGTCGG 59.141 55.000 24.07 0.00 0.00 4.79
198 199 0.232303 CGCGGATAAAATGAGTCGGC 59.768 55.000 0.00 0.00 35.60 5.54
199 200 0.232303 GCGGATAAAATGAGTCGGCG 59.768 55.000 0.00 0.00 0.00 6.46
200 201 1.567504 CGGATAAAATGAGTCGGCGT 58.432 50.000 6.85 0.00 0.00 5.68
201 202 1.257936 CGGATAAAATGAGTCGGCGTG 59.742 52.381 6.85 0.00 0.00 5.34
202 203 2.277084 GGATAAAATGAGTCGGCGTGT 58.723 47.619 6.85 0.00 0.00 4.49
203 204 2.676342 GGATAAAATGAGTCGGCGTGTT 59.324 45.455 6.85 0.00 0.00 3.32
204 205 3.485216 GGATAAAATGAGTCGGCGTGTTG 60.485 47.826 6.85 0.00 0.00 3.33
205 206 1.305201 AAAATGAGTCGGCGTGTTGT 58.695 45.000 6.85 0.00 0.00 3.32
206 207 2.157834 AAATGAGTCGGCGTGTTGTA 57.842 45.000 6.85 0.00 0.00 2.41
207 208 1.710013 AATGAGTCGGCGTGTTGTAG 58.290 50.000 6.85 0.00 0.00 2.74
208 209 0.736325 ATGAGTCGGCGTGTTGTAGC 60.736 55.000 6.85 0.00 0.00 3.58
209 210 1.080705 GAGTCGGCGTGTTGTAGCT 60.081 57.895 6.85 0.00 0.00 3.32
210 211 1.344942 GAGTCGGCGTGTTGTAGCTG 61.345 60.000 6.85 0.00 40.87 4.24
211 212 2.736995 TCGGCGTGTTGTAGCTGC 60.737 61.111 6.85 0.00 39.45 5.25
212 213 2.738521 CGGCGTGTTGTAGCTGCT 60.739 61.111 7.57 7.57 32.63 4.24
224 225 1.139853 GTAGCTGCTCTAAGGGCATGT 59.860 52.381 4.91 0.00 39.07 3.21
268 269 2.282251 TCAGCTCTCCACGTCGGT 60.282 61.111 0.00 0.00 35.57 4.69
292 293 1.523758 GTGGTCCTCGATTGCTGTTT 58.476 50.000 0.00 0.00 0.00 2.83
296 297 1.873591 GTCCTCGATTGCTGTTTGTGT 59.126 47.619 0.00 0.00 0.00 3.72
298 299 2.290367 TCCTCGATTGCTGTTTGTGTTG 59.710 45.455 0.00 0.00 0.00 3.33
306 583 1.563111 CTGTTTGTGTTGCTTGCAGG 58.437 50.000 0.00 0.00 0.00 4.85
320 597 0.624500 TGCAGGCTAAAGGGGGATCT 60.625 55.000 0.00 0.00 0.00 2.75
335 612 2.657102 GATCTTGCAGAGGAGGCCGG 62.657 65.000 0.00 0.00 0.00 6.13
355 632 0.595095 CTCCTGCCTGACAAAAGTGC 59.405 55.000 0.00 0.00 0.00 4.40
356 633 0.823356 TCCTGCCTGACAAAAGTGCC 60.823 55.000 0.00 0.00 0.00 5.01
389 666 1.181786 AGACGAGAGGAAGCTGAAGG 58.818 55.000 0.00 0.00 0.00 3.46
400 677 2.750350 CTGAAGGAAGCGTGGGGT 59.250 61.111 0.00 0.00 0.00 4.95
431 708 5.978814 TGGTAAAGCAGGAGAGAGAAATAC 58.021 41.667 0.00 0.00 0.00 1.89
434 711 4.647424 AAGCAGGAGAGAGAAATACGAG 57.353 45.455 0.00 0.00 0.00 4.18
492 769 0.608130 GGGCAGTGGATTTTTGGACC 59.392 55.000 0.00 0.00 0.00 4.46
500 777 2.766828 TGGATTTTTGGACCGTGGTTTT 59.233 40.909 0.00 0.00 0.00 2.43
508 785 1.154197 GACCGTGGTTTTCCTGCTAC 58.846 55.000 0.00 0.00 41.38 3.58
569 846 3.316308 GCTTCCATTGTACATGCCCTAAG 59.684 47.826 0.00 0.00 0.00 2.18
570 847 4.780815 CTTCCATTGTACATGCCCTAAGA 58.219 43.478 0.00 0.00 0.00 2.10
571 848 4.422073 TCCATTGTACATGCCCTAAGAG 57.578 45.455 0.00 0.00 0.00 2.85
572 849 2.880890 CCATTGTACATGCCCTAAGAGC 59.119 50.000 0.00 0.00 0.00 4.09
573 850 3.544684 CATTGTACATGCCCTAAGAGCA 58.455 45.455 0.00 0.00 45.94 4.26
574 851 2.988010 TGTACATGCCCTAAGAGCAG 57.012 50.000 0.00 0.00 44.90 4.24
575 852 1.486310 TGTACATGCCCTAAGAGCAGG 59.514 52.381 0.00 0.00 46.91 4.85
576 853 0.469917 TACATGCCCTAAGAGCAGGC 59.530 55.000 0.00 0.00 45.51 4.85
577 854 1.277580 ACATGCCCTAAGAGCAGGCT 61.278 55.000 0.00 0.00 45.51 4.58
578 855 2.807096 ACATGCCCTAAGAGCAGGCTT 61.807 52.381 1.51 0.00 45.51 4.35
579 856 4.232310 GCCCTAAGAGCAGGCTTG 57.768 61.111 0.00 0.00 43.62 4.01
580 857 1.301293 GCCCTAAGAGCAGGCTTGT 59.699 57.895 0.00 0.00 43.62 3.16
581 858 0.746204 GCCCTAAGAGCAGGCTTGTC 60.746 60.000 0.00 0.00 43.62 3.18
582 859 0.460987 CCCTAAGAGCAGGCTTGTCG 60.461 60.000 0.00 0.00 34.02 4.35
583 860 0.460987 CCTAAGAGCAGGCTTGTCGG 60.461 60.000 0.00 0.00 0.00 4.79
584 861 0.532573 CTAAGAGCAGGCTTGTCGGA 59.467 55.000 0.00 0.00 0.00 4.55
585 862 0.246635 TAAGAGCAGGCTTGTCGGAC 59.753 55.000 0.00 0.00 0.00 4.79
586 863 2.435059 GAGCAGGCTTGTCGGACC 60.435 66.667 5.55 0.00 0.00 4.46
587 864 2.925170 AGCAGGCTTGTCGGACCT 60.925 61.111 5.55 0.00 0.00 3.85
590 867 4.136978 AGGCTTGTCGGACCTGAT 57.863 55.556 5.55 0.00 30.82 2.90
591 868 1.599047 AGGCTTGTCGGACCTGATG 59.401 57.895 5.55 0.00 30.82 3.07
592 869 0.904865 AGGCTTGTCGGACCTGATGA 60.905 55.000 5.55 0.00 30.82 2.92
593 870 0.741221 GGCTTGTCGGACCTGATGAC 60.741 60.000 5.55 0.00 0.00 3.06
594 871 0.037326 GCTTGTCGGACCTGATGACA 60.037 55.000 5.55 0.00 40.62 3.58
595 872 1.406069 GCTTGTCGGACCTGATGACAT 60.406 52.381 5.55 0.00 41.80 3.06
596 873 2.544685 CTTGTCGGACCTGATGACATC 58.455 52.381 8.59 8.59 41.80 3.06
597 874 1.852633 TGTCGGACCTGATGACATCT 58.147 50.000 16.25 0.00 37.69 2.90
598 875 1.751351 TGTCGGACCTGATGACATCTC 59.249 52.381 16.25 5.89 37.69 2.75
599 876 1.751351 GTCGGACCTGATGACATCTCA 59.249 52.381 16.25 0.00 32.91 3.27
600 877 2.027385 TCGGACCTGATGACATCTCAG 58.973 52.381 16.25 7.92 39.88 3.35
605 882 1.568606 CTGATGACATCTCAGGTGCG 58.431 55.000 16.25 0.00 37.15 5.34
606 883 0.176449 TGATGACATCTCAGGTGCGG 59.824 55.000 16.25 0.00 0.00 5.69
607 884 0.531532 GATGACATCTCAGGTGCGGG 60.532 60.000 8.25 0.00 0.00 6.13
608 885 1.976132 ATGACATCTCAGGTGCGGGG 61.976 60.000 0.00 0.00 0.00 5.73
609 886 4.101448 ACATCTCAGGTGCGGGGC 62.101 66.667 0.00 0.00 0.00 5.80
610 887 3.790437 CATCTCAGGTGCGGGGCT 61.790 66.667 0.00 0.00 0.00 5.19
611 888 3.011517 ATCTCAGGTGCGGGGCTT 61.012 61.111 0.00 0.00 0.00 4.35
612 889 2.606587 ATCTCAGGTGCGGGGCTTT 61.607 57.895 0.00 0.00 0.00 3.51
613 890 2.826777 ATCTCAGGTGCGGGGCTTTG 62.827 60.000 0.00 0.00 0.00 2.77
618 895 3.741476 GTGCGGGGCTTTGCAGAG 61.741 66.667 0.00 0.00 42.68 3.35
619 896 3.952508 TGCGGGGCTTTGCAGAGA 61.953 61.111 8.73 0.00 35.90 3.10
620 897 2.672996 GCGGGGCTTTGCAGAGAA 60.673 61.111 8.73 0.00 0.00 2.87
621 898 2.694760 GCGGGGCTTTGCAGAGAAG 61.695 63.158 8.73 0.00 0.00 2.85
622 899 2.694760 CGGGGCTTTGCAGAGAAGC 61.695 63.158 8.73 10.75 46.71 3.86
625 902 2.873288 GCTTTGCAGAGAAGCCCG 59.127 61.111 8.73 0.00 42.79 6.13
626 903 2.694760 GCTTTGCAGAGAAGCCCGG 61.695 63.158 8.73 0.00 42.79 5.73
627 904 2.672996 TTTGCAGAGAAGCCCGGC 60.673 61.111 0.00 0.00 0.00 6.13
628 905 4.722700 TTGCAGAGAAGCCCGGCC 62.723 66.667 5.55 0.00 0.00 6.13
649 926 1.226773 GCACGAGAATGCCCATTGC 60.227 57.895 0.00 0.00 39.86 3.56
650 927 1.434696 CACGAGAATGCCCATTGCC 59.565 57.895 0.00 0.00 40.16 4.52
651 928 1.754234 ACGAGAATGCCCATTGCCC 60.754 57.895 0.00 0.00 40.16 5.36
652 929 1.753848 CGAGAATGCCCATTGCCCA 60.754 57.895 0.00 0.00 40.16 5.36
653 930 1.731433 CGAGAATGCCCATTGCCCAG 61.731 60.000 0.00 0.00 40.16 4.45
654 931 2.024590 GAGAATGCCCATTGCCCAGC 62.025 60.000 0.00 0.00 40.16 4.85
655 932 2.039951 AATGCCCATTGCCCAGCT 59.960 55.556 0.00 0.00 40.16 4.24
656 933 2.024590 GAATGCCCATTGCCCAGCTC 62.025 60.000 0.00 0.00 40.16 4.09
659 936 2.589540 CCCATTGCCCAGCTCGTA 59.410 61.111 0.00 0.00 0.00 3.43
660 937 1.819632 CCCATTGCCCAGCTCGTAC 60.820 63.158 0.00 0.00 0.00 3.67
661 938 2.173669 CCATTGCCCAGCTCGTACG 61.174 63.158 9.53 9.53 0.00 3.67
662 939 2.511600 ATTGCCCAGCTCGTACGC 60.512 61.111 11.24 0.00 0.00 4.42
666 943 3.812019 CCCAGCTCGTACGCGTCT 61.812 66.667 18.63 2.42 39.49 4.18
667 944 2.577112 CCAGCTCGTACGCGTCTG 60.577 66.667 18.63 16.77 38.46 3.51
668 945 2.176055 CAGCTCGTACGCGTCTGT 59.824 61.111 18.63 0.00 39.49 3.41
669 946 1.422662 CAGCTCGTACGCGTCTGTA 59.577 57.895 18.63 0.00 39.49 2.74
670 947 0.856490 CAGCTCGTACGCGTCTGTAC 60.856 60.000 18.63 7.57 41.01 2.90
671 948 1.133253 GCTCGTACGCGTCTGTACA 59.867 57.895 18.63 0.00 43.89 2.90
672 949 0.453282 GCTCGTACGCGTCTGTACAA 60.453 55.000 18.63 0.00 43.89 2.41
673 950 1.521411 CTCGTACGCGTCTGTACAAG 58.479 55.000 18.63 0.00 43.89 3.16
674 951 0.867746 TCGTACGCGTCTGTACAAGT 59.132 50.000 18.63 0.00 43.89 3.16
675 952 1.264020 TCGTACGCGTCTGTACAAGTT 59.736 47.619 18.63 0.00 43.89 2.66
676 953 2.046313 CGTACGCGTCTGTACAAGTTT 58.954 47.619 18.63 0.00 43.89 2.66
677 954 2.088056 CGTACGCGTCTGTACAAGTTTC 59.912 50.000 18.63 0.00 43.89 2.78
678 955 2.503920 ACGCGTCTGTACAAGTTTCT 57.496 45.000 5.58 0.00 0.00 2.52
679 956 2.124903 ACGCGTCTGTACAAGTTTCTG 58.875 47.619 5.58 0.00 0.00 3.02
680 957 1.455786 CGCGTCTGTACAAGTTTCTGG 59.544 52.381 0.00 0.00 0.00 3.86
681 958 1.194772 GCGTCTGTACAAGTTTCTGGC 59.805 52.381 0.00 0.00 0.00 4.85
682 959 1.798813 CGTCTGTACAAGTTTCTGGCC 59.201 52.381 0.00 0.00 0.00 5.36
683 960 2.805295 CGTCTGTACAAGTTTCTGGCCA 60.805 50.000 4.71 4.71 0.00 5.36
684 961 2.548480 GTCTGTACAAGTTTCTGGCCAC 59.452 50.000 0.00 0.00 0.00 5.01
685 962 2.438021 TCTGTACAAGTTTCTGGCCACT 59.562 45.455 0.00 0.00 0.00 4.00
686 963 2.808543 CTGTACAAGTTTCTGGCCACTC 59.191 50.000 0.00 0.00 0.00 3.51
687 964 2.438021 TGTACAAGTTTCTGGCCACTCT 59.562 45.455 0.00 0.00 0.00 3.24
688 965 2.262423 ACAAGTTTCTGGCCACTCTC 57.738 50.000 0.00 0.00 0.00 3.20
689 966 1.771255 ACAAGTTTCTGGCCACTCTCT 59.229 47.619 0.00 0.00 0.00 3.10
690 967 2.173569 ACAAGTTTCTGGCCACTCTCTT 59.826 45.455 0.00 1.75 0.00 2.85
691 968 3.217626 CAAGTTTCTGGCCACTCTCTTT 58.782 45.455 0.00 0.00 0.00 2.52
692 969 3.133141 AGTTTCTGGCCACTCTCTTTC 57.867 47.619 0.00 0.00 0.00 2.62
693 970 2.708325 AGTTTCTGGCCACTCTCTTTCT 59.292 45.455 0.00 0.00 0.00 2.52
694 971 3.070748 GTTTCTGGCCACTCTCTTTCTC 58.929 50.000 0.00 0.00 0.00 2.87
695 972 2.317371 TCTGGCCACTCTCTTTCTCT 57.683 50.000 0.00 0.00 0.00 3.10
696 973 2.175202 TCTGGCCACTCTCTTTCTCTC 58.825 52.381 0.00 0.00 0.00 3.20
697 974 2.178580 CTGGCCACTCTCTTTCTCTCT 58.821 52.381 0.00 0.00 0.00 3.10
698 975 2.166254 CTGGCCACTCTCTTTCTCTCTC 59.834 54.545 0.00 0.00 0.00 3.20
699 976 2.175202 GGCCACTCTCTTTCTCTCTCA 58.825 52.381 0.00 0.00 0.00 3.27
700 977 2.564947 GGCCACTCTCTTTCTCTCTCAA 59.435 50.000 0.00 0.00 0.00 3.02
701 978 3.007398 GGCCACTCTCTTTCTCTCTCAAA 59.993 47.826 0.00 0.00 0.00 2.69
702 979 4.503991 GGCCACTCTCTTTCTCTCTCAAAA 60.504 45.833 0.00 0.00 0.00 2.44
703 980 5.059833 GCCACTCTCTTTCTCTCTCAAAAA 58.940 41.667 0.00 0.00 0.00 1.94
721 998 2.755952 AAAAAGGTTCTGGCCACTCT 57.244 45.000 0.00 0.00 0.00 3.24
722 999 2.278332 AAAAGGTTCTGGCCACTCTC 57.722 50.000 0.00 0.00 0.00 3.20
723 1000 1.439543 AAAGGTTCTGGCCACTCTCT 58.560 50.000 0.00 0.00 0.00 3.10
724 1001 0.980423 AAGGTTCTGGCCACTCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
725 1002 0.116143 AGGTTCTGGCCACTCTCTCT 59.884 55.000 0.00 0.00 0.00 3.10
726 1003 0.534873 GGTTCTGGCCACTCTCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
727 1004 1.555967 GTTCTGGCCACTCTCTCTCT 58.444 55.000 0.00 0.00 0.00 3.10
728 1005 1.476488 GTTCTGGCCACTCTCTCTCTC 59.524 57.143 0.00 0.00 0.00 3.20
729 1006 0.998928 TCTGGCCACTCTCTCTCTCT 59.001 55.000 0.00 0.00 0.00 3.10
730 1007 1.064758 TCTGGCCACTCTCTCTCTCTC 60.065 57.143 0.00 0.00 0.00 3.20
731 1008 0.701147 TGGCCACTCTCTCTCTCTCA 59.299 55.000 0.00 0.00 0.00 3.27
732 1009 1.076187 TGGCCACTCTCTCTCTCTCAA 59.924 52.381 0.00 0.00 0.00 3.02
733 1010 2.175202 GGCCACTCTCTCTCTCTCAAA 58.825 52.381 0.00 0.00 0.00 2.69
734 1011 2.564947 GGCCACTCTCTCTCTCTCAAAA 59.435 50.000 0.00 0.00 0.00 2.44
735 1012 3.007398 GGCCACTCTCTCTCTCTCAAAAA 59.993 47.826 0.00 0.00 0.00 1.94
787 1066 1.817609 CGAAAACGCAACCGAAAAGT 58.182 45.000 0.00 0.00 38.29 2.66
788 1067 1.771291 CGAAAACGCAACCGAAAAGTC 59.229 47.619 0.00 0.00 38.29 3.01
790 1069 0.590481 AAACGCAACCGAAAAGTCGC 60.590 50.000 0.00 0.00 46.28 5.19
791 1070 1.707239 AACGCAACCGAAAAGTCGCA 61.707 50.000 0.00 0.00 46.28 5.10
792 1071 1.721133 CGCAACCGAAAAGTCGCAC 60.721 57.895 0.00 0.00 46.28 5.34
793 1072 1.721133 GCAACCGAAAAGTCGCACG 60.721 57.895 0.00 0.00 46.28 5.34
794 1073 1.721133 CAACCGAAAAGTCGCACGC 60.721 57.895 0.00 0.00 46.28 5.34
795 1074 3.218209 AACCGAAAAGTCGCACGCG 62.218 57.895 3.53 3.53 46.28 6.01
848 1127 2.735772 CGCCCAGCCCTGACTACAT 61.736 63.158 0.00 0.00 0.00 2.29
891 1171 4.658786 ACCCCTCCTCGCCCACTT 62.659 66.667 0.00 0.00 0.00 3.16
906 1186 0.921896 CACTTCCCACCATCCATCCT 59.078 55.000 0.00 0.00 0.00 3.24
997 1277 1.693799 ATTAACCCACCTCACCCCAT 58.306 50.000 0.00 0.00 0.00 4.00
998 1278 0.996583 TTAACCCACCTCACCCCATC 59.003 55.000 0.00 0.00 0.00 3.51
1010 1290 2.378634 CCCCATCCTCCACCTCCAC 61.379 68.421 0.00 0.00 0.00 4.02
1013 1293 1.604378 CATCCTCCACCTCCACCAC 59.396 63.158 0.00 0.00 0.00 4.16
1016 1296 1.925455 CCTCCACCTCCACCACCAT 60.925 63.158 0.00 0.00 0.00 3.55
1045 1325 0.823356 CCACCACTCCCAACACAAGG 60.823 60.000 0.00 0.00 0.00 3.61
1056 1337 1.805428 AACACAAGGCAATCCCACGC 61.805 55.000 0.00 0.00 35.39 5.34
1076 1357 1.725706 CAGAGACAGAAAGAAGCAGCG 59.274 52.381 0.00 0.00 0.00 5.18
1100 1384 2.423898 GGCGAAGATGTCCGGGAGA 61.424 63.158 0.00 0.00 0.00 3.71
1453 1737 8.609176 GGCAACGAGATAAATTGTCACTATAAA 58.391 33.333 0.00 0.00 0.00 1.40
1470 1754 7.926555 TCACTATAAAGCTAGCAGTATTTGTCC 59.073 37.037 18.83 0.00 0.00 4.02
1481 1765 2.370849 AGTATTTGTCCAGGGTTCGTGT 59.629 45.455 0.00 0.00 0.00 4.49
1484 1768 0.462937 TTGTCCAGGGTTCGTGTGTG 60.463 55.000 0.00 0.00 0.00 3.82
1503 2604 2.088423 TGTCTTCGGTGTTGTTTGCTT 58.912 42.857 0.00 0.00 0.00 3.91
1557 2764 6.525578 TGTACTAGTACCAAGACTGAATGG 57.474 41.667 26.41 0.00 42.60 3.16
1580 2787 5.748630 GGAAATCGAATTTGGGAATTACAGC 59.251 40.000 0.00 0.00 35.65 4.40
1582 2789 3.601435 TCGAATTTGGGAATTACAGCGA 58.399 40.909 0.00 0.00 35.65 4.93
1584 2791 3.680789 GAATTTGGGAATTACAGCGACG 58.319 45.455 0.00 0.00 35.65 5.12
1585 2792 2.172851 TTTGGGAATTACAGCGACGT 57.827 45.000 0.00 0.00 0.00 4.34
1601 2808 2.473984 CGACGTTGTTTACCCTTGAGTC 59.526 50.000 0.00 0.00 0.00 3.36
1610 2871 1.136329 ACCCTTGAGTCCACCTGCAT 61.136 55.000 0.00 0.00 0.00 3.96
1621 2882 2.037687 CCTGCATTCCCTTGCCCA 59.962 61.111 0.00 0.00 42.06 5.36
1644 2907 1.870402 TCGTTGATTTGTGCACGATGT 59.130 42.857 13.13 2.05 0.00 3.06
1648 2911 2.435422 TGATTTGTGCACGATGTCCAT 58.565 42.857 13.13 0.00 0.00 3.41
1649 2912 2.419673 TGATTTGTGCACGATGTCCATC 59.580 45.455 13.13 10.24 34.56 3.51
1650 2913 2.183478 TTTGTGCACGATGTCCATCT 57.817 45.000 13.13 0.00 35.72 2.90
1662 2926 3.610040 TGTCCATCTTATCAGTGCGTT 57.390 42.857 0.00 0.00 0.00 4.84
1667 2931 3.470709 CATCTTATCAGTGCGTTCCCAT 58.529 45.455 0.00 0.00 0.00 4.00
1673 2937 0.609131 CAGTGCGTTCCCATTTCCCT 60.609 55.000 0.00 0.00 0.00 4.20
1676 2940 1.067846 GTGCGTTCCCATTTCCCTTTC 60.068 52.381 0.00 0.00 0.00 2.62
1678 2942 0.808755 CGTTCCCATTTCCCTTTCCG 59.191 55.000 0.00 0.00 0.00 4.30
1679 2943 0.530744 GTTCCCATTTCCCTTTCCGC 59.469 55.000 0.00 0.00 0.00 5.54
1680 2944 0.613572 TTCCCATTTCCCTTTCCGCC 60.614 55.000 0.00 0.00 0.00 6.13
1713 2978 0.612732 CTGCCCCCAAATCAAGCTGA 60.613 55.000 0.00 0.00 0.00 4.26
1722 2987 3.490761 CCAAATCAAGCTGACCGTGTTTT 60.491 43.478 0.00 0.00 0.00 2.43
1723 2988 4.261405 CCAAATCAAGCTGACCGTGTTTTA 60.261 41.667 0.00 0.00 0.00 1.52
1728 2993 5.897050 TCAAGCTGACCGTGTTTTATTTTT 58.103 33.333 0.00 0.00 0.00 1.94
1730 2995 7.653647 TCAAGCTGACCGTGTTTTATTTTTAT 58.346 30.769 0.00 0.00 0.00 1.40
1749 3096 5.596268 TTATATTCATGTGTGATCTGCGC 57.404 39.130 0.00 0.00 33.56 6.09
1753 3100 1.022982 CATGTGTGATCTGCGCCTGT 61.023 55.000 4.18 0.00 0.00 4.00
1758 3105 1.206849 TGTGATCTGCGCCTGTTGATA 59.793 47.619 4.18 0.00 0.00 2.15
1759 3106 1.594862 GTGATCTGCGCCTGTTGATAC 59.405 52.381 4.18 0.00 0.00 2.24
1760 3107 1.482182 TGATCTGCGCCTGTTGATACT 59.518 47.619 4.18 0.00 0.00 2.12
1761 3108 2.131183 GATCTGCGCCTGTTGATACTC 58.869 52.381 4.18 0.00 0.00 2.59
1763 3110 0.458543 CTGCGCCTGTTGATACTCGT 60.459 55.000 4.18 0.00 0.00 4.18
1764 3111 0.812549 TGCGCCTGTTGATACTCGTA 59.187 50.000 4.18 0.00 0.00 3.43
1765 3112 1.202817 TGCGCCTGTTGATACTCGTAA 59.797 47.619 4.18 0.00 0.00 3.18
1766 3113 2.159156 TGCGCCTGTTGATACTCGTAAT 60.159 45.455 4.18 0.00 0.00 1.89
1768 3115 2.794910 CGCCTGTTGATACTCGTAATGG 59.205 50.000 0.00 0.00 0.00 3.16
1773 3192 6.511767 GCCTGTTGATACTCGTAATGGAAATG 60.512 42.308 0.00 0.00 0.00 2.32
1781 3200 2.752354 TCGTAATGGAAATGCTGTTGGG 59.248 45.455 0.00 0.00 0.00 4.12
1796 3215 2.494471 TGTTGGGGATCTACACTGTACG 59.506 50.000 0.00 0.00 0.00 3.67
1797 3216 1.108776 TGGGGATCTACACTGTACGC 58.891 55.000 0.00 0.00 0.00 4.42
1808 3228 0.515564 ACTGTACGCGTCAAAATGCC 59.484 50.000 18.63 0.00 33.60 4.40
1809 3229 0.796312 CTGTACGCGTCAAAATGCCT 59.204 50.000 18.63 0.00 33.60 4.75
1849 3269 3.940209 TTGCCAAGAATGTGATGGAAC 57.060 42.857 0.00 0.00 36.27 3.62
1850 3270 3.159213 TGCCAAGAATGTGATGGAACT 57.841 42.857 0.00 0.00 36.27 3.01
1851 3271 2.821378 TGCCAAGAATGTGATGGAACTG 59.179 45.455 0.00 0.00 36.27 3.16
1852 3272 2.821969 GCCAAGAATGTGATGGAACTGT 59.178 45.455 0.00 0.00 36.27 3.55
1853 3273 3.366679 GCCAAGAATGTGATGGAACTGTG 60.367 47.826 0.00 0.00 36.27 3.66
1854 3274 4.074259 CCAAGAATGTGATGGAACTGTGA 58.926 43.478 0.00 0.00 36.27 3.58
1855 3275 4.520111 CCAAGAATGTGATGGAACTGTGAA 59.480 41.667 0.00 0.00 36.27 3.18
1866 3286 3.066621 TGGAACTGTGAAATTGCAGTGTC 59.933 43.478 10.16 0.00 44.21 3.67
1892 3312 2.833943 GCCCCTGAATTCACCTTCAATT 59.166 45.455 3.38 0.00 34.86 2.32
1894 3314 4.824289 CCCCTGAATTCACCTTCAATTTG 58.176 43.478 3.38 0.00 34.86 2.32
1905 3325 4.741676 CACCTTCAATTTGTTGCTCAGTTC 59.258 41.667 0.00 0.00 0.00 3.01
1916 3336 8.578308 TTTGTTGCTCAGTTCATTTCTATTTG 57.422 30.769 0.00 0.00 0.00 2.32
1921 3341 5.798934 GCTCAGTTCATTTCTATTTGTGCAG 59.201 40.000 0.00 0.00 0.00 4.41
1926 3346 5.840243 TCATTTCTATTTGTGCAGGATGG 57.160 39.130 0.00 0.00 35.86 3.51
1942 3362 6.126796 TGCAGGATGGTGAATCTTATCAGTTA 60.127 38.462 0.00 0.00 35.86 2.24
1943 3363 6.203723 GCAGGATGGTGAATCTTATCAGTTAC 59.796 42.308 0.00 0.00 35.86 2.50
1944 3364 7.504403 CAGGATGGTGAATCTTATCAGTTACT 58.496 38.462 0.00 0.00 35.43 2.24
1945 3365 8.642432 CAGGATGGTGAATCTTATCAGTTACTA 58.358 37.037 0.00 0.00 35.43 1.82
1946 3366 8.643324 AGGATGGTGAATCTTATCAGTTACTAC 58.357 37.037 0.00 0.00 35.43 2.73
1947 3367 8.643324 GGATGGTGAATCTTATCAGTTACTACT 58.357 37.037 0.00 0.00 35.43 2.57
1989 3525 2.161410 GTGGCTGTGTATCAAATTGCGA 59.839 45.455 0.00 0.00 0.00 5.10
2060 3598 1.063942 TCGCCTCCCATAGAGTTCAGA 60.064 52.381 0.00 0.00 41.47 3.27
2125 3663 3.004629 TGCTGTGTTTCATCCATGTGTTC 59.995 43.478 0.00 0.00 0.00 3.18
2135 3673 3.303881 TCCATGTGTTCTCAGAACGAG 57.696 47.619 12.98 2.68 43.80 4.18
2166 3704 2.227626 GGGAGTTCTGCAAGCTTTTCTC 59.772 50.000 0.00 0.00 0.00 2.87
2168 3706 3.058363 GGAGTTCTGCAAGCTTTTCTCTG 60.058 47.826 0.00 0.00 0.00 3.35
2169 3707 3.812053 GAGTTCTGCAAGCTTTTCTCTGA 59.188 43.478 0.00 0.00 0.00 3.27
2171 3709 4.036144 AGTTCTGCAAGCTTTTCTCTGAAC 59.964 41.667 18.84 18.84 33.64 3.18
2173 3711 3.562973 TCTGCAAGCTTTTCTCTGAACAG 59.437 43.478 0.00 0.00 0.00 3.16
2174 3712 2.620115 TGCAAGCTTTTCTCTGAACAGG 59.380 45.455 0.00 0.00 0.00 4.00
2175 3713 2.880890 GCAAGCTTTTCTCTGAACAGGA 59.119 45.455 0.00 0.00 0.00 3.86
2176 3714 3.316308 GCAAGCTTTTCTCTGAACAGGAA 59.684 43.478 0.00 2.61 0.00 3.36
2177 3715 4.556302 GCAAGCTTTTCTCTGAACAGGAAG 60.556 45.833 0.00 3.79 0.00 3.46
2178 3716 3.749226 AGCTTTTCTCTGAACAGGAAGG 58.251 45.455 1.93 4.03 0.00 3.46
2179 3717 3.137360 AGCTTTTCTCTGAACAGGAAGGT 59.863 43.478 1.93 5.04 0.00 3.50
2180 3718 3.251972 GCTTTTCTCTGAACAGGAAGGTG 59.748 47.826 1.93 1.95 0.00 4.00
2181 3719 3.492102 TTTCTCTGAACAGGAAGGTGG 57.508 47.619 1.93 0.00 0.00 4.61
2182 3720 0.687354 TCTCTGAACAGGAAGGTGGC 59.313 55.000 1.93 0.00 0.00 5.01
2183 3721 0.689623 CTCTGAACAGGAAGGTGGCT 59.310 55.000 1.93 0.00 0.00 4.75
2184 3722 1.072965 CTCTGAACAGGAAGGTGGCTT 59.927 52.381 1.93 0.00 0.00 4.35
2185 3723 1.494721 TCTGAACAGGAAGGTGGCTTT 59.505 47.619 1.93 0.00 0.00 3.51
2186 3724 2.091885 TCTGAACAGGAAGGTGGCTTTT 60.092 45.455 1.93 0.00 0.00 2.27
2187 3725 2.294512 CTGAACAGGAAGGTGGCTTTTC 59.705 50.000 0.00 0.00 0.00 2.29
2188 3726 2.091885 TGAACAGGAAGGTGGCTTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
2200 3738 4.154195 GGTGGCTTTTCTGTACTGTACATG 59.846 45.833 19.99 14.02 38.15 3.21
2230 4450 7.529880 AATACTGCGTTATTAGGTGTACAAC 57.470 36.000 1.50 1.50 0.00 3.32
2232 4452 5.484715 ACTGCGTTATTAGGTGTACAACAT 58.515 37.500 14.58 0.94 0.00 2.71
2233 4453 5.579511 ACTGCGTTATTAGGTGTACAACATC 59.420 40.000 14.58 0.00 0.00 3.06
2234 4454 5.480205 TGCGTTATTAGGTGTACAACATCA 58.520 37.500 14.58 0.00 29.79 3.07
2235 4455 5.579119 TGCGTTATTAGGTGTACAACATCAG 59.421 40.000 14.58 0.00 29.79 2.90
2247 4467 8.995220 GGTGTACAACATCAGTGATAAACTTTA 58.005 33.333 5.89 0.00 36.83 1.85
2290 4510 6.947464 ACAGTATAAACATGGTTAGCAGAGT 58.053 36.000 9.47 1.54 0.00 3.24
2332 4725 8.840321 TGATAAAATAACCTTTCTGCATCTAGC 58.160 33.333 0.00 0.00 45.96 3.42
2366 4765 9.783081 ATCATTATCATGCACATCAACTAGTAA 57.217 29.630 0.00 0.00 0.00 2.24
2370 4769 9.836864 TTATCATGCACATCAACTAGTAATTCT 57.163 29.630 0.00 0.00 0.00 2.40
2377 4993 9.534565 GCACATCAACTAGTAATTCTTATCTCA 57.465 33.333 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.155167 CTACTCCCCCTGACCCGC 61.155 72.222 0.00 0.00 0.00 6.13
4 5 1.911702 GCCAACTACTCCCCCTGACC 61.912 65.000 0.00 0.00 0.00 4.02
5 6 1.602771 GCCAACTACTCCCCCTGAC 59.397 63.158 0.00 0.00 0.00 3.51
6 7 1.987855 CGCCAACTACTCCCCCTGA 60.988 63.158 0.00 0.00 0.00 3.86
7 8 2.584608 CGCCAACTACTCCCCCTG 59.415 66.667 0.00 0.00 0.00 4.45
8 9 3.400054 GCGCCAACTACTCCCCCT 61.400 66.667 0.00 0.00 0.00 4.79
9 10 4.832608 CGCGCCAACTACTCCCCC 62.833 72.222 0.00 0.00 0.00 5.40
11 12 3.952628 AAGCGCGCCAACTACTCCC 62.953 63.158 30.33 0.00 0.00 4.30
12 13 2.434359 AAGCGCGCCAACTACTCC 60.434 61.111 30.33 0.00 0.00 3.85
13 14 2.789203 CGAAGCGCGCCAACTACTC 61.789 63.158 30.33 11.79 0.00 2.59
14 15 2.809601 CGAAGCGCGCCAACTACT 60.810 61.111 30.33 3.60 0.00 2.57
41 42 2.983030 TTGGCATGGACACGGCAC 60.983 61.111 0.00 0.00 37.43 5.01
42 43 2.983030 GTTGGCATGGACACGGCA 60.983 61.111 0.00 0.00 35.67 5.69
43 44 4.101790 CGTTGGCATGGACACGGC 62.102 66.667 0.86 0.00 0.00 5.68
44 45 3.430862 CCGTTGGCATGGACACGG 61.431 66.667 12.71 12.71 31.56 4.94
45 46 1.511318 TTTCCGTTGGCATGGACACG 61.511 55.000 8.36 5.15 37.87 4.49
46 47 0.887933 ATTTCCGTTGGCATGGACAC 59.112 50.000 8.36 0.00 37.87 3.67
47 48 0.887247 CATTTCCGTTGGCATGGACA 59.113 50.000 8.36 3.34 37.87 4.02
48 49 1.133025 CTCATTTCCGTTGGCATGGAC 59.867 52.381 8.36 0.00 37.87 4.02
49 50 1.462616 CTCATTTCCGTTGGCATGGA 58.537 50.000 4.98 4.98 36.15 3.41
50 51 0.457035 CCTCATTTCCGTTGGCATGG 59.543 55.000 0.00 0.02 0.00 3.66
51 52 0.179129 GCCTCATTTCCGTTGGCATG 60.179 55.000 0.00 0.00 42.79 4.06
52 53 0.323725 AGCCTCATTTCCGTTGGCAT 60.324 50.000 0.00 0.00 45.42 4.40
53 54 0.326595 TAGCCTCATTTCCGTTGGCA 59.673 50.000 0.00 0.00 45.42 4.92
54 55 1.459450 TTAGCCTCATTTCCGTTGGC 58.541 50.000 0.00 0.00 43.52 4.52
55 56 4.513198 TTTTTAGCCTCATTTCCGTTGG 57.487 40.909 0.00 0.00 0.00 3.77
73 74 2.295070 CGACCCATTTTCGGTCCTTTTT 59.705 45.455 1.53 0.00 46.01 1.94
74 75 1.883926 CGACCCATTTTCGGTCCTTTT 59.116 47.619 1.53 0.00 46.01 2.27
75 76 1.530323 CGACCCATTTTCGGTCCTTT 58.470 50.000 1.53 0.00 46.01 3.11
76 77 3.243128 CGACCCATTTTCGGTCCTT 57.757 52.632 1.53 0.00 46.01 3.36
82 83 2.112815 GCCTCCCGACCCATTTTCG 61.113 63.158 0.00 0.00 36.20 3.46
83 84 2.112815 CGCCTCCCGACCCATTTTC 61.113 63.158 0.00 0.00 40.02 2.29
84 85 2.045340 CGCCTCCCGACCCATTTT 60.045 61.111 0.00 0.00 40.02 1.82
85 86 4.109675 CCGCCTCCCGACCCATTT 62.110 66.667 0.00 0.00 40.02 2.32
91 92 3.366739 ATTTCGTCCGCCTCCCGAC 62.367 63.158 0.00 0.00 40.02 4.79
92 93 3.072468 ATTTCGTCCGCCTCCCGA 61.072 61.111 0.00 0.00 40.02 5.14
93 94 2.585247 GATTTCGTCCGCCTCCCG 60.585 66.667 0.00 0.00 0.00 5.14
94 95 1.521681 CAGATTTCGTCCGCCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
95 96 0.806492 GTCAGATTTCGTCCGCCTCC 60.806 60.000 0.00 0.00 0.00 4.30
96 97 1.140407 CGTCAGATTTCGTCCGCCTC 61.140 60.000 0.00 0.00 0.00 4.70
97 98 1.153823 CGTCAGATTTCGTCCGCCT 60.154 57.895 0.00 0.00 0.00 5.52
98 99 2.799540 GCGTCAGATTTCGTCCGCC 61.800 63.158 0.00 0.00 35.45 6.13
99 100 2.695646 GCGTCAGATTTCGTCCGC 59.304 61.111 0.00 0.00 0.00 5.54
100 101 2.987593 CGCGTCAGATTTCGTCCG 59.012 61.111 0.00 0.00 0.00 4.79
101 102 2.695646 GCGCGTCAGATTTCGTCC 59.304 61.111 8.43 0.00 0.00 4.79
102 103 2.313374 CGCGCGTCAGATTTCGTC 59.687 61.111 24.19 0.00 0.00 4.20
103 104 2.430244 ACGCGCGTCAGATTTCGT 60.430 55.556 32.73 2.20 0.00 3.85
122 123 3.273834 AACACGCCGACCCAAACG 61.274 61.111 0.00 0.00 0.00 3.60
123 124 2.330041 CAACACGCCGACCCAAAC 59.670 61.111 0.00 0.00 0.00 2.93
124 125 2.902846 CCAACACGCCGACCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
125 126 3.862991 TCCAACACGCCGACCCAA 61.863 61.111 0.00 0.00 0.00 4.12
126 127 4.612412 GTCCAACACGCCGACCCA 62.612 66.667 0.00 0.00 0.00 4.51
131 132 1.847890 AAATTCGGTCCAACACGCCG 61.848 55.000 0.00 0.00 46.12 6.46
132 133 0.312729 AAAATTCGGTCCAACACGCC 59.687 50.000 0.00 0.00 0.00 5.68
133 134 1.265905 AGAAAATTCGGTCCAACACGC 59.734 47.619 0.00 0.00 0.00 5.34
134 135 2.289547 ACAGAAAATTCGGTCCAACACG 59.710 45.455 0.00 0.00 29.57 4.49
135 136 3.885358 GACAGAAAATTCGGTCCAACAC 58.115 45.455 13.34 0.00 43.56 3.32
141 142 0.446616 GGCGGACAGAAAATTCGGTC 59.553 55.000 15.28 15.28 46.91 4.79
142 143 1.296056 CGGCGGACAGAAAATTCGGT 61.296 55.000 0.00 0.00 38.30 4.69
143 144 1.423845 CGGCGGACAGAAAATTCGG 59.576 57.895 0.00 0.00 0.00 4.30
144 145 1.226018 GCGGCGGACAGAAAATTCG 60.226 57.895 9.78 0.00 0.00 3.34
145 146 1.226018 CGCGGCGGACAGAAAATTC 60.226 57.895 15.84 0.00 0.00 2.17
146 147 1.024579 ATCGCGGCGGACAGAAAATT 61.025 50.000 23.46 0.00 0.00 1.82
147 148 1.024579 AATCGCGGCGGACAGAAAAT 61.025 50.000 23.46 2.58 0.00 1.82
148 149 1.632046 GAATCGCGGCGGACAGAAAA 61.632 55.000 23.46 0.00 0.00 2.29
149 150 2.047655 AATCGCGGCGGACAGAAA 60.048 55.556 23.46 0.62 0.00 2.52
150 151 2.508439 GAATCGCGGCGGACAGAA 60.508 61.111 23.46 1.46 0.00 3.02
151 152 2.773397 TTTGAATCGCGGCGGACAGA 62.773 55.000 23.46 12.10 0.00 3.41
152 153 2.387445 TTTGAATCGCGGCGGACAG 61.387 57.895 23.46 0.00 0.00 3.51
153 154 2.357638 TTTGAATCGCGGCGGACA 60.358 55.556 23.46 16.34 0.00 4.02
154 155 2.097728 GTTTGAATCGCGGCGGAC 59.902 61.111 23.46 13.99 0.00 4.79
155 156 3.483665 CGTTTGAATCGCGGCGGA 61.484 61.111 23.46 9.74 0.00 5.54
156 157 4.514569 CCGTTTGAATCGCGGCGG 62.515 66.667 23.46 3.89 38.99 6.13
157 158 3.483665 TCCGTTTGAATCGCGGCG 61.484 61.111 17.70 17.70 44.58 6.46
158 159 2.097728 GTCCGTTTGAATCGCGGC 59.902 61.111 6.13 0.00 44.58 6.53
159 160 2.394136 CGTCCGTTTGAATCGCGG 59.606 61.111 6.13 4.74 46.12 6.46
160 161 2.275812 GCGTCCGTTTGAATCGCG 60.276 61.111 0.00 0.00 37.74 5.87
161 162 2.097728 GGCGTCCGTTTGAATCGC 59.902 61.111 0.00 0.00 44.95 4.58
162 163 2.782615 GGGCGTCCGTTTGAATCG 59.217 61.111 0.00 0.00 0.00 3.34
172 173 1.890510 ATTTTATCCGCGGGCGTCC 60.891 57.895 27.83 0.00 37.81 4.79
173 174 1.155424 TCATTTTATCCGCGGGCGTC 61.155 55.000 27.83 0.00 37.81 5.19
174 175 1.153329 TCATTTTATCCGCGGGCGT 60.153 52.632 27.83 14.49 37.81 5.68
175 176 1.157870 ACTCATTTTATCCGCGGGCG 61.158 55.000 27.83 6.00 39.44 6.13
176 177 0.586802 GACTCATTTTATCCGCGGGC 59.413 55.000 27.83 0.00 0.00 6.13
177 178 0.859232 CGACTCATTTTATCCGCGGG 59.141 55.000 27.83 7.21 0.00 6.13
178 179 0.859232 CCGACTCATTTTATCCGCGG 59.141 55.000 22.12 22.12 0.00 6.46
179 180 0.232303 GCCGACTCATTTTATCCGCG 59.768 55.000 0.00 0.00 0.00 6.46
180 181 0.232303 CGCCGACTCATTTTATCCGC 59.768 55.000 0.00 0.00 0.00 5.54
181 182 1.257936 CACGCCGACTCATTTTATCCG 59.742 52.381 0.00 0.00 0.00 4.18
182 183 2.277084 ACACGCCGACTCATTTTATCC 58.723 47.619 0.00 0.00 0.00 2.59
183 184 3.124636 ACAACACGCCGACTCATTTTATC 59.875 43.478 0.00 0.00 0.00 1.75
184 185 3.071479 ACAACACGCCGACTCATTTTAT 58.929 40.909 0.00 0.00 0.00 1.40
185 186 2.485903 ACAACACGCCGACTCATTTTA 58.514 42.857 0.00 0.00 0.00 1.52
186 187 1.305201 ACAACACGCCGACTCATTTT 58.695 45.000 0.00 0.00 0.00 1.82
187 188 2.066262 CTACAACACGCCGACTCATTT 58.934 47.619 0.00 0.00 0.00 2.32
188 189 1.710013 CTACAACACGCCGACTCATT 58.290 50.000 0.00 0.00 0.00 2.57
189 190 0.736325 GCTACAACACGCCGACTCAT 60.736 55.000 0.00 0.00 0.00 2.90
190 191 1.372499 GCTACAACACGCCGACTCA 60.372 57.895 0.00 0.00 0.00 3.41
191 192 1.080705 AGCTACAACACGCCGACTC 60.081 57.895 0.00 0.00 0.00 3.36
192 193 1.372997 CAGCTACAACACGCCGACT 60.373 57.895 0.00 0.00 0.00 4.18
193 194 3.011760 GCAGCTACAACACGCCGAC 62.012 63.158 0.00 0.00 0.00 4.79
194 195 2.736995 GCAGCTACAACACGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
195 196 2.730672 GAGCAGCTACAACACGCCG 61.731 63.158 0.00 0.00 0.00 6.46
196 197 0.108804 TAGAGCAGCTACAACACGCC 60.109 55.000 0.00 0.00 0.00 5.68
197 198 1.656095 CTTAGAGCAGCTACAACACGC 59.344 52.381 0.00 0.00 0.00 5.34
198 199 2.263077 CCTTAGAGCAGCTACAACACG 58.737 52.381 0.00 0.00 0.00 4.49
199 200 2.622436 CCCTTAGAGCAGCTACAACAC 58.378 52.381 0.00 0.00 0.00 3.32
200 201 1.066143 GCCCTTAGAGCAGCTACAACA 60.066 52.381 0.00 0.00 0.00 3.33
201 202 1.066143 TGCCCTTAGAGCAGCTACAAC 60.066 52.381 0.00 0.00 34.69 3.32
202 203 1.275666 TGCCCTTAGAGCAGCTACAA 58.724 50.000 0.00 0.00 34.69 2.41
203 204 1.139654 CATGCCCTTAGAGCAGCTACA 59.860 52.381 0.00 0.00 44.90 2.74
204 205 1.139853 ACATGCCCTTAGAGCAGCTAC 59.860 52.381 0.00 0.00 44.90 3.58
205 206 1.414181 GACATGCCCTTAGAGCAGCTA 59.586 52.381 0.00 0.00 44.90 3.32
206 207 0.179936 GACATGCCCTTAGAGCAGCT 59.820 55.000 0.00 0.00 44.90 4.24
207 208 0.817229 GGACATGCCCTTAGAGCAGC 60.817 60.000 0.00 0.00 44.90 5.25
208 209 0.543277 TGGACATGCCCTTAGAGCAG 59.457 55.000 0.00 0.00 44.90 4.24
209 210 0.991146 TTGGACATGCCCTTAGAGCA 59.009 50.000 0.00 0.00 45.94 4.26
210 211 1.383523 GTTGGACATGCCCTTAGAGC 58.616 55.000 0.00 0.00 34.97 4.09
211 212 1.656652 CGTTGGACATGCCCTTAGAG 58.343 55.000 0.00 0.00 34.97 2.43
212 213 0.392461 GCGTTGGACATGCCCTTAGA 60.392 55.000 0.00 0.00 34.97 2.10
268 269 1.594833 CAATCGAGGACCACCCGAA 59.405 57.895 7.54 0.00 40.26 4.30
292 293 1.337703 CTTTAGCCTGCAAGCAACACA 59.662 47.619 10.50 0.00 34.23 3.72
296 297 0.899717 CCCCTTTAGCCTGCAAGCAA 60.900 55.000 10.50 0.00 34.23 3.91
298 299 2.054453 CCCCCTTTAGCCTGCAAGC 61.054 63.158 0.00 0.00 0.00 4.01
306 583 1.212935 TCTGCAAGATCCCCCTTTAGC 59.787 52.381 0.00 0.00 38.67 3.09
335 612 0.595095 CACTTTTGTCAGGCAGGAGC 59.405 55.000 0.00 0.00 41.10 4.70
341 618 2.050077 GCGGCACTTTTGTCAGGC 60.050 61.111 0.00 0.00 0.00 4.85
373 650 1.738700 GCTTCCTTCAGCTTCCTCTCG 60.739 57.143 0.00 0.00 36.79 4.04
389 666 0.250513 AGATCTCAACCCCACGCTTC 59.749 55.000 0.00 0.00 0.00 3.86
400 677 4.096681 TCTCCTGCTTTACCAGATCTCAA 58.903 43.478 0.00 0.00 34.77 3.02
480 757 3.386486 GAAAACCACGGTCCAAAAATCC 58.614 45.455 0.00 0.00 0.00 3.01
492 769 3.564225 AGAAAAGTAGCAGGAAAACCACG 59.436 43.478 0.00 0.00 0.00 4.94
500 777 2.353406 GCCACGTAGAAAAGTAGCAGGA 60.353 50.000 0.00 0.00 0.00 3.86
508 785 2.811431 TCACCATTGCCACGTAGAAAAG 59.189 45.455 0.00 0.00 0.00 2.27
569 846 2.435059 GGTCCGACAAGCCTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
570 847 2.925170 AGGTCCGACAAGCCTGCT 60.925 61.111 0.00 0.00 0.00 4.24
571 848 2.527951 ATCAGGTCCGACAAGCCTGC 62.528 60.000 0.00 0.00 46.82 4.85
573 850 0.904865 TCATCAGGTCCGACAAGCCT 60.905 55.000 0.00 0.00 0.00 4.58
574 851 0.741221 GTCATCAGGTCCGACAAGCC 60.741 60.000 0.00 0.00 0.00 4.35
575 852 0.037326 TGTCATCAGGTCCGACAAGC 60.037 55.000 0.00 0.00 36.75 4.01
576 853 2.167281 AGATGTCATCAGGTCCGACAAG 59.833 50.000 15.20 0.00 42.53 3.16
577 854 2.166459 GAGATGTCATCAGGTCCGACAA 59.834 50.000 15.20 0.00 42.53 3.18
578 855 1.751351 GAGATGTCATCAGGTCCGACA 59.249 52.381 15.20 0.47 43.35 4.35
579 856 1.751351 TGAGATGTCATCAGGTCCGAC 59.249 52.381 15.20 0.00 0.00 4.79
580 857 2.027385 CTGAGATGTCATCAGGTCCGA 58.973 52.381 15.20 0.00 40.44 4.55
581 858 2.505628 CTGAGATGTCATCAGGTCCG 57.494 55.000 15.20 0.00 40.44 4.79
586 863 1.568606 CGCACCTGAGATGTCATCAG 58.431 55.000 15.20 6.07 43.15 2.90
587 864 0.176449 CCGCACCTGAGATGTCATCA 59.824 55.000 15.20 0.00 30.18 3.07
588 865 0.531532 CCCGCACCTGAGATGTCATC 60.532 60.000 4.52 4.52 30.18 2.92
589 866 1.524002 CCCGCACCTGAGATGTCAT 59.476 57.895 0.00 0.00 30.18 3.06
590 867 2.659063 CCCCGCACCTGAGATGTCA 61.659 63.158 0.00 0.00 0.00 3.58
591 868 2.187946 CCCCGCACCTGAGATGTC 59.812 66.667 0.00 0.00 0.00 3.06
592 869 4.101448 GCCCCGCACCTGAGATGT 62.101 66.667 0.00 0.00 0.00 3.06
593 870 2.826777 AAAGCCCCGCACCTGAGATG 62.827 60.000 0.00 0.00 0.00 2.90
594 871 2.606587 AAAGCCCCGCACCTGAGAT 61.607 57.895 0.00 0.00 0.00 2.75
595 872 3.249189 AAAGCCCCGCACCTGAGA 61.249 61.111 0.00 0.00 0.00 3.27
596 873 3.058160 CAAAGCCCCGCACCTGAG 61.058 66.667 0.00 0.00 0.00 3.35
601 878 3.741476 CTCTGCAAAGCCCCGCAC 61.741 66.667 0.00 0.00 33.75 5.34
602 879 3.490031 TTCTCTGCAAAGCCCCGCA 62.490 57.895 0.00 0.00 36.52 5.69
603 880 2.672996 TTCTCTGCAAAGCCCCGC 60.673 61.111 0.00 0.00 0.00 6.13
604 881 2.694760 GCTTCTCTGCAAAGCCCCG 61.695 63.158 9.98 0.00 42.63 5.73
605 882 3.282271 GCTTCTCTGCAAAGCCCC 58.718 61.111 9.98 0.00 42.63 5.80
608 885 2.694760 CCGGGCTTCTCTGCAAAGC 61.695 63.158 12.28 12.28 46.66 3.51
609 886 2.694760 GCCGGGCTTCTCTGCAAAG 61.695 63.158 12.87 0.00 34.04 2.77
610 887 2.672996 GCCGGGCTTCTCTGCAAA 60.673 61.111 12.87 0.00 34.04 3.68
611 888 4.722700 GGCCGGGCTTCTCTGCAA 62.723 66.667 22.87 0.00 34.04 4.08
631 908 1.226773 GCAATGGGCATTCTCGTGC 60.227 57.895 0.00 0.00 43.97 5.34
641 918 3.697439 TACGAGCTGGGCAATGGGC 62.697 63.158 0.00 0.00 43.74 5.36
642 919 1.819632 GTACGAGCTGGGCAATGGG 60.820 63.158 0.00 0.00 0.00 4.00
643 920 2.173669 CGTACGAGCTGGGCAATGG 61.174 63.158 10.44 0.00 0.00 3.16
644 921 2.813179 GCGTACGAGCTGGGCAATG 61.813 63.158 21.65 0.00 0.00 2.82
645 922 2.511600 GCGTACGAGCTGGGCAAT 60.512 61.111 21.65 0.00 0.00 3.56
649 926 3.812019 AGACGCGTACGAGCTGGG 61.812 66.667 21.65 0.00 43.93 4.45
650 927 1.974249 TACAGACGCGTACGAGCTGG 61.974 60.000 30.20 19.23 43.95 4.85
651 928 0.856490 GTACAGACGCGTACGAGCTG 60.856 60.000 27.66 27.66 44.62 4.24
652 929 1.293963 TGTACAGACGCGTACGAGCT 61.294 55.000 21.65 14.30 43.89 4.09
653 930 0.453282 TTGTACAGACGCGTACGAGC 60.453 55.000 21.65 12.14 43.89 5.03
654 931 1.521411 CTTGTACAGACGCGTACGAG 58.479 55.000 21.65 19.58 43.85 4.18
655 932 0.867746 ACTTGTACAGACGCGTACGA 59.132 50.000 21.65 5.58 43.89 3.43
656 933 1.678360 AACTTGTACAGACGCGTACG 58.322 50.000 13.97 11.84 43.89 3.67
657 934 3.119136 CAGAAACTTGTACAGACGCGTAC 59.881 47.826 13.97 7.46 41.78 3.67
658 935 3.302555 CAGAAACTTGTACAGACGCGTA 58.697 45.455 13.97 0.00 0.00 4.42
659 936 2.124903 CAGAAACTTGTACAGACGCGT 58.875 47.619 13.85 13.85 0.00 6.01
660 937 1.455786 CCAGAAACTTGTACAGACGCG 59.544 52.381 3.53 3.53 0.00 6.01
661 938 1.194772 GCCAGAAACTTGTACAGACGC 59.805 52.381 0.00 0.00 0.00 5.19
662 939 1.798813 GGCCAGAAACTTGTACAGACG 59.201 52.381 0.00 0.00 0.00 4.18
663 940 2.548480 GTGGCCAGAAACTTGTACAGAC 59.452 50.000 5.11 0.00 0.00 3.51
664 941 2.438021 AGTGGCCAGAAACTTGTACAGA 59.562 45.455 5.11 0.00 0.00 3.41
665 942 2.808543 GAGTGGCCAGAAACTTGTACAG 59.191 50.000 5.11 0.00 0.00 2.74
666 943 2.438021 AGAGTGGCCAGAAACTTGTACA 59.562 45.455 5.11 0.00 0.00 2.90
667 944 3.067833 GAGAGTGGCCAGAAACTTGTAC 58.932 50.000 5.11 0.00 0.00 2.90
668 945 2.972713 AGAGAGTGGCCAGAAACTTGTA 59.027 45.455 5.11 0.00 0.00 2.41
669 946 1.771255 AGAGAGTGGCCAGAAACTTGT 59.229 47.619 5.11 0.00 0.00 3.16
670 947 2.557920 AGAGAGTGGCCAGAAACTTG 57.442 50.000 5.11 0.00 0.00 3.16
671 948 3.137360 AGAAAGAGAGTGGCCAGAAACTT 59.863 43.478 5.11 7.55 0.00 2.66
672 949 2.708325 AGAAAGAGAGTGGCCAGAAACT 59.292 45.455 5.11 0.00 0.00 2.66
673 950 3.070748 GAGAAAGAGAGTGGCCAGAAAC 58.929 50.000 5.11 0.00 0.00 2.78
674 951 2.975489 AGAGAAAGAGAGTGGCCAGAAA 59.025 45.455 5.11 0.00 0.00 2.52
675 952 2.564947 GAGAGAAAGAGAGTGGCCAGAA 59.435 50.000 5.11 0.00 0.00 3.02
676 953 2.175202 GAGAGAAAGAGAGTGGCCAGA 58.825 52.381 5.11 0.00 0.00 3.86
677 954 2.166254 GAGAGAGAAAGAGAGTGGCCAG 59.834 54.545 5.11 0.00 0.00 4.85
678 955 2.175202 GAGAGAGAAAGAGAGTGGCCA 58.825 52.381 0.00 0.00 0.00 5.36
679 956 2.175202 TGAGAGAGAAAGAGAGTGGCC 58.825 52.381 0.00 0.00 0.00 5.36
680 957 3.951775 TTGAGAGAGAAAGAGAGTGGC 57.048 47.619 0.00 0.00 0.00 5.01
702 979 2.175715 AGAGAGTGGCCAGAACCTTTTT 59.824 45.455 5.11 0.00 0.00 1.94
703 980 1.777272 AGAGAGTGGCCAGAACCTTTT 59.223 47.619 5.11 0.00 0.00 2.27
704 981 1.349357 GAGAGAGTGGCCAGAACCTTT 59.651 52.381 5.11 0.00 0.00 3.11
705 982 0.980423 GAGAGAGTGGCCAGAACCTT 59.020 55.000 5.11 0.00 0.00 3.50
706 983 0.116143 AGAGAGAGTGGCCAGAACCT 59.884 55.000 5.11 0.00 0.00 3.50
707 984 0.534873 GAGAGAGAGTGGCCAGAACC 59.465 60.000 5.11 0.00 0.00 3.62
708 985 1.476488 GAGAGAGAGAGTGGCCAGAAC 59.524 57.143 5.11 0.00 0.00 3.01
709 986 1.357420 AGAGAGAGAGAGTGGCCAGAA 59.643 52.381 5.11 0.00 0.00 3.02
710 987 0.998928 AGAGAGAGAGAGTGGCCAGA 59.001 55.000 5.11 0.00 0.00 3.86
711 988 1.340893 TGAGAGAGAGAGAGTGGCCAG 60.341 57.143 5.11 0.00 0.00 4.85
712 989 0.701147 TGAGAGAGAGAGAGTGGCCA 59.299 55.000 0.00 0.00 0.00 5.36
713 990 1.846007 TTGAGAGAGAGAGAGTGGCC 58.154 55.000 0.00 0.00 0.00 5.36
714 991 3.951775 TTTTGAGAGAGAGAGAGTGGC 57.048 47.619 0.00 0.00 0.00 5.01
734 1011 1.138859 GCCAGTGGCCAGAAACTTTTT 59.861 47.619 24.53 0.00 44.06 1.94
735 1012 0.752658 GCCAGTGGCCAGAAACTTTT 59.247 50.000 24.53 0.00 44.06 2.27
736 1013 2.429927 GCCAGTGGCCAGAAACTTT 58.570 52.632 24.53 0.00 44.06 2.66
737 1014 4.181051 GCCAGTGGCCAGAAACTT 57.819 55.556 24.53 0.00 44.06 2.66
768 1045 3.698631 CGACTTTTCGGTTGCGTTTTCG 61.699 50.000 0.00 0.00 41.89 3.46
769 1046 1.771291 CGACTTTTCGGTTGCGTTTTC 59.229 47.619 0.00 0.00 41.89 2.29
836 1115 2.822399 CGGGGATGTAGTCAGGGC 59.178 66.667 0.00 0.00 0.00 5.19
841 1120 2.106332 CGTGGCGGGGATGTAGTC 59.894 66.667 0.00 0.00 0.00 2.59
884 1164 2.043953 GGATGGTGGGAAGTGGGC 60.044 66.667 0.00 0.00 0.00 5.36
891 1171 1.776667 GATGAAGGATGGATGGTGGGA 59.223 52.381 0.00 0.00 0.00 4.37
906 1186 1.091537 GATTTCCGCCGTTGGATGAA 58.908 50.000 0.00 0.00 38.00 2.57
973 1253 3.978672 GGGGTGAGGTGGGTTAATATAGT 59.021 47.826 0.00 0.00 0.00 2.12
997 1277 2.203938 GGTGGTGGAGGTGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
998 1278 1.915078 GATGGTGGTGGAGGTGGAGG 61.915 65.000 0.00 0.00 0.00 4.30
1010 1290 1.616327 TGGAGGTGGAGGATGGTGG 60.616 63.158 0.00 0.00 0.00 4.61
1013 1293 1.616327 TGGTGGAGGTGGAGGATGG 60.616 63.158 0.00 0.00 0.00 3.51
1016 1296 1.229209 GAGTGGTGGAGGTGGAGGA 60.229 63.158 0.00 0.00 0.00 3.71
1045 1325 1.364626 CTGTCTCTGCGTGGGATTGC 61.365 60.000 0.00 0.00 0.00 3.56
1056 1337 1.725706 CGCTGCTTCTTTCTGTCTCTG 59.274 52.381 0.00 0.00 0.00 3.35
1100 1384 2.241659 CCCCTTTCCTCCCTTGCCT 61.242 63.158 0.00 0.00 0.00 4.75
1427 1711 4.946784 AGTGACAATTTATCTCGTTGCC 57.053 40.909 0.00 0.00 0.00 4.52
1443 1727 8.649973 ACAAATACTGCTAGCTTTATAGTGAC 57.350 34.615 17.23 0.00 0.00 3.67
1445 1729 7.710907 TGGACAAATACTGCTAGCTTTATAGTG 59.289 37.037 17.23 14.38 0.00 2.74
1446 1730 7.792032 TGGACAAATACTGCTAGCTTTATAGT 58.208 34.615 17.23 12.76 0.00 2.12
1453 1737 2.171448 CCCTGGACAAATACTGCTAGCT 59.829 50.000 17.23 0.00 0.00 3.32
1470 1754 1.217882 GAAGACACACACGAACCCTG 58.782 55.000 0.00 0.00 0.00 4.45
1481 1765 1.131504 GCAAACAACACCGAAGACACA 59.868 47.619 0.00 0.00 0.00 3.72
1484 1768 2.844122 AAGCAAACAACACCGAAGAC 57.156 45.000 0.00 0.00 0.00 3.01
1503 2604 2.156917 CATCAAGCAGGAACAGAGCAA 58.843 47.619 0.00 0.00 0.00 3.91
1557 2764 5.455525 CGCTGTAATTCCCAAATTCGATTTC 59.544 40.000 0.00 0.00 36.49 2.17
1580 2787 2.473984 GACTCAAGGGTAAACAACGTCG 59.526 50.000 0.00 0.00 0.00 5.12
1582 2789 2.171027 TGGACTCAAGGGTAAACAACGT 59.829 45.455 0.00 0.00 0.00 3.99
1584 2791 2.882761 GGTGGACTCAAGGGTAAACAAC 59.117 50.000 0.00 0.00 0.00 3.32
1585 2792 2.781174 AGGTGGACTCAAGGGTAAACAA 59.219 45.455 0.00 0.00 0.00 2.83
1601 2808 3.291611 GCAAGGGAATGCAGGTGG 58.708 61.111 0.00 0.00 45.70 4.61
1610 2871 0.821711 CAACGAACTGGGCAAGGGAA 60.822 55.000 0.00 0.00 0.00 3.97
1621 2882 1.937223 TCGTGCACAAATCAACGAACT 59.063 42.857 18.64 0.00 0.00 3.01
1644 2907 2.158957 GGGAACGCACTGATAAGATGGA 60.159 50.000 0.00 0.00 0.00 3.41
1648 2911 3.627395 AATGGGAACGCACTGATAAGA 57.373 42.857 0.00 0.00 0.00 2.10
1649 2912 3.065371 GGAAATGGGAACGCACTGATAAG 59.935 47.826 0.00 0.00 0.00 1.73
1650 2913 3.013921 GGAAATGGGAACGCACTGATAA 58.986 45.455 0.00 0.00 0.00 1.75
1662 2926 1.000145 GGCGGAAAGGGAAATGGGA 60.000 57.895 0.00 0.00 0.00 4.37
1667 2931 2.359478 GAGCGGCGGAAAGGGAAA 60.359 61.111 9.78 0.00 0.00 3.13
1673 2937 0.248012 TTGATACAGAGCGGCGGAAA 59.752 50.000 9.78 0.00 0.00 3.13
1676 2940 0.460284 AGTTTGATACAGAGCGGCGG 60.460 55.000 9.78 0.00 0.00 6.13
1678 2942 0.375106 GCAGTTTGATACAGAGCGGC 59.625 55.000 0.00 0.00 0.00 6.53
1679 2943 1.009829 GGCAGTTTGATACAGAGCGG 58.990 55.000 0.00 0.00 0.00 5.52
1680 2944 1.009829 GGGCAGTTTGATACAGAGCG 58.990 55.000 0.00 0.00 0.00 5.03
1723 2988 7.592533 GCGCAGATCACACATGAATATAAAAAT 59.407 33.333 0.30 0.00 38.69 1.82
1728 2993 3.996363 GGCGCAGATCACACATGAATATA 59.004 43.478 10.83 0.00 38.69 0.86
1730 2995 2.158914 AGGCGCAGATCACACATGAATA 60.159 45.455 10.83 0.00 38.69 1.75
1742 3089 1.536922 CGAGTATCAACAGGCGCAGAT 60.537 52.381 10.83 6.75 33.17 2.90
1749 3096 6.511767 GCATTTCCATTACGAGTATCAACAGG 60.512 42.308 0.00 0.00 33.17 4.00
1753 3100 6.112734 ACAGCATTTCCATTACGAGTATCAA 58.887 36.000 0.00 0.00 33.17 2.57
1758 3105 3.440173 CCAACAGCATTTCCATTACGAGT 59.560 43.478 0.00 0.00 0.00 4.18
1759 3106 3.181497 CCCAACAGCATTTCCATTACGAG 60.181 47.826 0.00 0.00 0.00 4.18
1760 3107 2.752354 CCCAACAGCATTTCCATTACGA 59.248 45.455 0.00 0.00 0.00 3.43
1761 3108 2.159254 CCCCAACAGCATTTCCATTACG 60.159 50.000 0.00 0.00 0.00 3.18
1763 3110 3.464720 TCCCCAACAGCATTTCCATTA 57.535 42.857 0.00 0.00 0.00 1.90
1764 3111 2.323999 TCCCCAACAGCATTTCCATT 57.676 45.000 0.00 0.00 0.00 3.16
1765 3112 2.023695 AGATCCCCAACAGCATTTCCAT 60.024 45.455 0.00 0.00 0.00 3.41
1766 3113 1.358787 AGATCCCCAACAGCATTTCCA 59.641 47.619 0.00 0.00 0.00 3.53
1768 3115 3.378427 GTGTAGATCCCCAACAGCATTTC 59.622 47.826 0.00 0.00 0.00 2.17
1773 3192 1.279271 ACAGTGTAGATCCCCAACAGC 59.721 52.381 0.00 0.00 0.00 4.40
1781 3200 1.399440 TGACGCGTACAGTGTAGATCC 59.601 52.381 13.97 0.00 44.77 3.36
1796 3215 4.798387 CCTAATAACAAGGCATTTTGACGC 59.202 41.667 2.38 0.00 0.00 5.19
1797 3216 5.799936 CACCTAATAACAAGGCATTTTGACG 59.200 40.000 2.38 0.00 37.67 4.35
1831 3251 2.821969 ACAGTTCCATCACATTCTTGGC 59.178 45.455 0.00 0.00 0.00 4.52
1849 3269 3.338818 AACGACACTGCAATTTCACAG 57.661 42.857 0.00 0.00 39.86 3.66
1850 3270 3.433709 CAAACGACACTGCAATTTCACA 58.566 40.909 0.00 0.00 0.00 3.58
1851 3271 2.216263 GCAAACGACACTGCAATTTCAC 59.784 45.455 0.00 0.00 38.48 3.18
1852 3272 2.458951 GCAAACGACACTGCAATTTCA 58.541 42.857 0.00 0.00 38.48 2.69
1853 3273 1.786579 GGCAAACGACACTGCAATTTC 59.213 47.619 0.00 0.00 40.46 2.17
1854 3274 1.537990 GGGCAAACGACACTGCAATTT 60.538 47.619 0.00 0.00 40.46 1.82
1855 3275 0.031994 GGGCAAACGACACTGCAATT 59.968 50.000 0.00 0.00 40.46 2.32
1866 3286 0.243636 GGTGAATTCAGGGGCAAACG 59.756 55.000 8.80 0.00 0.00 3.60
1892 3312 7.648908 CACAAATAGAAATGAACTGAGCAACAA 59.351 33.333 0.00 0.00 0.00 2.83
1894 3314 6.088616 GCACAAATAGAAATGAACTGAGCAAC 59.911 38.462 0.00 0.00 0.00 4.17
1905 3325 5.125900 TCACCATCCTGCACAAATAGAAATG 59.874 40.000 0.00 0.00 0.00 2.32
1916 3336 4.454678 TGATAAGATTCACCATCCTGCAC 58.545 43.478 0.00 0.00 31.20 4.57
1921 3341 8.643324 AGTAGTAACTGATAAGATTCACCATCC 58.357 37.037 0.00 0.00 33.57 3.51
1942 3362 8.026396 TGAAAGGGTAACTGAAAACTAGTAGT 57.974 34.615 0.00 0.00 0.00 2.73
1943 3363 8.148999 ACTGAAAGGGTAACTGAAAACTAGTAG 58.851 37.037 0.00 0.00 39.30 2.57
1944 3364 7.929785 CACTGAAAGGGTAACTGAAAACTAGTA 59.070 37.037 0.00 0.00 39.30 1.82
1945 3365 6.766467 CACTGAAAGGGTAACTGAAAACTAGT 59.234 38.462 0.00 0.00 39.30 2.57
1946 3366 6.204882 CCACTGAAAGGGTAACTGAAAACTAG 59.795 42.308 0.00 0.00 33.29 2.57
1947 3367 6.059484 CCACTGAAAGGGTAACTGAAAACTA 58.941 40.000 0.00 0.00 33.29 2.24
1956 3376 1.880027 CACAGCCACTGAAAGGGTAAC 59.120 52.381 0.78 0.00 33.29 2.50
1989 3525 0.178953 ACCAGCCAGCTTGATTTGGT 60.179 50.000 0.00 4.03 36.81 3.67
2060 3598 1.307343 AGGCAGGTCACAGGGCTAT 60.307 57.895 0.00 0.00 35.48 2.97
2125 3663 5.419542 TCCCAATTGTATTCTCGTTCTGAG 58.580 41.667 4.43 0.00 46.72 3.35
2135 3673 5.643379 TTGCAGAACTCCCAATTGTATTC 57.357 39.130 4.43 2.87 0.00 1.75
2142 3680 2.299326 AAGCTTGCAGAACTCCCAAT 57.701 45.000 0.00 0.00 0.00 3.16
2166 3704 1.986882 AAAGCCACCTTCCTGTTCAG 58.013 50.000 0.00 0.00 0.00 3.02
2168 3706 2.294512 CAGAAAAGCCACCTTCCTGTTC 59.705 50.000 0.00 0.00 0.00 3.18
2169 3707 2.310538 CAGAAAAGCCACCTTCCTGTT 58.689 47.619 0.00 0.00 0.00 3.16
2171 3709 1.986882 ACAGAAAAGCCACCTTCCTG 58.013 50.000 0.00 0.00 0.00 3.86
2173 3711 2.814336 CAGTACAGAAAAGCCACCTTCC 59.186 50.000 0.00 0.00 0.00 3.46
2174 3712 3.477530 ACAGTACAGAAAAGCCACCTTC 58.522 45.455 0.00 0.00 0.00 3.46
2175 3713 3.577805 ACAGTACAGAAAAGCCACCTT 57.422 42.857 0.00 0.00 0.00 3.50
2176 3714 3.389983 TGTACAGTACAGAAAAGCCACCT 59.610 43.478 9.51 0.00 34.06 4.00
2177 3715 3.735591 TGTACAGTACAGAAAAGCCACC 58.264 45.455 9.51 0.00 34.06 4.61
2178 3716 4.755123 ACATGTACAGTACAGAAAAGCCAC 59.245 41.667 18.30 0.00 42.77 5.01
2179 3717 4.968259 ACATGTACAGTACAGAAAAGCCA 58.032 39.130 18.30 0.00 42.77 4.75
2180 3718 7.429636 TTTACATGTACAGTACAGAAAAGCC 57.570 36.000 18.30 0.00 42.77 4.35
2230 4450 7.456253 CCGAACTGTAAAGTTTATCACTGATG 58.544 38.462 0.00 0.00 35.12 3.07
2232 4452 5.407387 GCCGAACTGTAAAGTTTATCACTGA 59.593 40.000 0.00 0.00 35.12 3.41
2233 4453 5.408604 AGCCGAACTGTAAAGTTTATCACTG 59.591 40.000 0.00 0.00 35.12 3.66
2234 4454 5.548406 AGCCGAACTGTAAAGTTTATCACT 58.452 37.500 0.00 0.00 37.30 3.41
2235 4455 5.857822 AGCCGAACTGTAAAGTTTATCAC 57.142 39.130 0.00 0.00 31.35 3.06
2247 4467 2.009774 GTATGCATCAAGCCGAACTGT 58.990 47.619 0.19 0.00 44.83 3.55
2332 4725 8.293867 TGATGTGCATGATAATGATATGTTGTG 58.706 33.333 0.00 0.00 0.00 3.33
2429 6225 8.993121 CAATTTGCTGATACTCGTATAAATCCT 58.007 33.333 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.