AutoCloner

Multiple sequence alignment - TraesCS5B01G301200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G301200	chr5B	100.000	2243	0	0	1	2243	486036156	486033914	0.000000e+00	4143.0
1	TraesCS5B01G301200	chr5B	83.978	181	25	3	8	184	6515508	6515688	1.070000e-38	171.0
2	TraesCS5B01G301200	chr5B	79.921	254	33	10	999	1252	485571818	485571583	1.070000e-38	171.0
3	TraesCS5B01G301200	chr5B	82.386	176	21	9	744	916	486001003	486000835	6.460000e-31	145.0
4	TraesCS5B01G301200	chr5A	87.636	1286	92	39	449	1713	509224722	509225961	0.000000e+00	1432.0
5	TraesCS5B01G301200	chr5A	95.775	142	6	0	2101	2242	343767300	343767159	1.730000e-56	230.0
6	TraesCS5B01G301200	chr5A	82.249	169	21	5	994	1159	509985541	509985703	1.080000e-28	137.0
7	TraesCS5B01G301200	chr5A	95.000	80	2	2	1634	1713	509226728	509226805	8.410000e-25	124.0
8	TraesCS5B01G301200	chr5A	97.015	67	2	0	315	381	509224625	509224691	1.820000e-21	113.0
9	TraesCS5B01G301200	chr5A	90.909	66	6	0	1182	1247	509985705	509985770	3.070000e-14	89.8
10	TraesCS5B01G301200	chr5A	97.222	36	1	0	8	43	665969370	665969335	6.690000e-06	62.1
11	TraesCS5B01G301200	chr5A	100.000	28	0	0	416	443	509224701	509224728	4.000000e-03	52.8
12	TraesCS5B01G301200	chr2B	95.144	556	15	5	1695	2243	38372497	38373047	0.000000e+00	867.0
13	TraesCS5B01G301200	chr2B	80.439	547	63	28	1714	2241	774368610	774369131	5.850000e-101	377.0
14	TraesCS5B01G301200	chr2B	93.750	144	5	3	2101	2242	606482923	606483064	1.740000e-51	213.0
15	TraesCS5B01G301200	chr5D	95.379	541	13	2	1715	2243	77058257	77058797	0.000000e+00	850.0
16	TraesCS5B01G301200	chr5D	86.864	609	41	24	744	1340	404768729	404768148	0.000000e+00	645.0
17	TraesCS5B01G301200	chr5D	91.045	402	29	4	823	1217	404863762	404863361	9.120000e-149	536.0
18	TraesCS5B01G301200	chr5D	90.176	397	29	4	1	388	404866354	404865959	1.990000e-140	508.0
19	TraesCS5B01G301200	chr5D	92.090	354	8	3	1360	1713	404862123	404861790	4.330000e-132	481.0
20	TraesCS5B01G301200	chr5D	88.974	390	20	8	449	833	404865948	404865577	5.640000e-126	460.0
21	TraesCS5B01G301200	chr5D	81.890	254	25	6	999	1252	404261321	404261089	6.320000e-46	195.0
22	TraesCS5B01G301200	chr5D	93.137	102	2	2	1274	1375	404863364	404863268	6.460000e-31	145.0
23	TraesCS5B01G301200	chr5D	93.590	78	5	0	1177	1254	404240040	404239963	1.410000e-22	117.0
24	TraesCS5B01G301200	chr5D	100.000	31	0	0	413	443	404865972	404865942	8.650000e-05	58.4
25	TraesCS5B01G301200	chr4A	94.981	538	17	3	1713	2243	725273921	725273387	0.000000e+00	835.0
26	TraesCS5B01G301200	chr4A	95.455	44	0	1	8	49	642840587	642840544	4.000000e-08	69.4
27	TraesCS5B01G301200	chr1B	94.600	537	11	4	1714	2243	200648742	200649267	0.000000e+00	815.0
28	TraesCS5B01G301200	chr1B	84.831	178	25	2	1714	1890	144873503	144873679	6.370000e-41	178.0
29	TraesCS5B01G301200	chr1D	93.506	539	26	3	1714	2243	5628626	5629164	0.000000e+00	793.0
30	TraesCS5B01G301200	chr7B	97.396	192	5	0	1713	1904	633322939	633322748	5.970000e-86	327.0
31	TraesCS5B01G301200	chr7B	93.478	184	5	1	1895	2071	633321419	633321236	1.320000e-67	267.0
32	TraesCS5B01G301200	chr7A	90.164	183	18	0	1	183	484486112	484486294	2.880000e-59	239.0
33	TraesCS5B01G301200	chr7A	79.208	101	18	3	29	127	301122446	301122545	1.440000e-07	67.6
34	TraesCS5B01G301200	chr4D	88.889	189	18	3	1714	1901	503264595	503264781	1.730000e-56	230.0
35	TraesCS5B01G301200	chr3B	90.604	149	14	0	2094	2242	568561111	568560963	4.890000e-47	198.0
36	TraesCS5B01G301200	chr7D	85.106	188	26	2	1715	1901	506554821	506555007	8.180000e-45	191.0
37	TraesCS5B01G301200	chr2A	82.105	190	25	7	1	183	88744293	88744480	1.070000e-33	154.0
38	TraesCS5B01G301200	chr2D	82.123	179	26	4	8	181	100785391	100785214	4.990000e-32	148.0
39	TraesCS5B01G301200	chr3A	88.235	85	9	1	7	91	628701415	628701332	1.420000e-17	100.0
40	TraesCS5B01G301200	chr4B	91.111	45	2	2	8	50	63905006	63904962	2.410000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G301200	chr5B	486033914	486036156	2242	True	4143.000000	4143	100.000000	1	2243	1	chr5B.!!$R3	2242
1	TraesCS5B01G301200	chr5A	509224625	509226805	2180	False	430.450000	1432	94.912750	315	1713	4	chr5A.!!$F1	1398
2	TraesCS5B01G301200	chr2B	38372497	38373047	550	False	867.000000	867	95.144000	1695	2243	1	chr2B.!!$F1	548
3	TraesCS5B01G301200	chr2B	774368610	774369131	521	False	377.000000	377	80.439000	1714	2241	1	chr2B.!!$F3	527
4	TraesCS5B01G301200	chr5D	77058257	77058797	540	False	850.000000	850	95.379000	1715	2243	1	chr5D.!!$F1	528
5	TraesCS5B01G301200	chr5D	404768148	404768729	581	True	645.000000	645	86.864000	744	1340	1	chr5D.!!$R3	596
6	TraesCS5B01G301200	chr5D	404861790	404866354	4564	True	364.733333	536	92.570333	1	1713	6	chr5D.!!$R4	1712
7	TraesCS5B01G301200	chr4A	725273387	725273921	534	True	835.000000	835	94.981000	1713	2243	1	chr4A.!!$R2	530
8	TraesCS5B01G301200	chr1B	200648742	200649267	525	False	815.000000	815	94.600000	1714	2243	1	chr1B.!!$F2	529
9	TraesCS5B01G301200	chr1D	5628626	5629164	538	False	793.000000	793	93.506000	1714	2243	1	chr1D.!!$F1	529
10	TraesCS5B01G301200	chr7B	633321236	633322939	1703	True	297.000000	327	95.437000	1713	2071	2	chr7B.!!$R1	358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
998	2868	0.03779	GCTTCTCGGCAGTTCTCTGT	60.038	55.0	0.0	0.0	43.05	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2062	7342	1.271379	TCGTACAATCGACAGGCAAGT	59.729	47.619	0.0	0.0	34.85	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	5.975693	TTTACATCTCCATTTTGGACCAC	57.024	39.130	0.00	0.00	42.67	4.16
72	73	2.879103	TCTCCATTTTGGACCACCTC	57.121	50.000	0.00	0.00	42.67	3.85
76	77	2.490718	TCCATTTTGGACCACCTCTTGG	60.491	50.000	0.00	0.00	42.67	3.61
91	92	5.008118	CACCTCTTGGAGTTGAGTCTTTTTC	59.992	44.000	0.00	0.00	37.04	2.29
102	103	9.657121	GAGTTGAGTCTTTTTCAAAGATGTAAG	57.343	33.333	2.36	0.00	36.41	2.34
109	110	8.131731	GTCTTTTTCAAAGATGTAAGAAGCACT	58.868	33.333	2.36	0.00	0.00	4.40
115	116	7.202526	TCAAAGATGTAAGAAGCACTTTTTGG	58.797	34.615	12.91	0.00	39.72	3.28
149	150	5.263599	TCTTACATCACCAATTTGGAGCAT	58.736	37.500	22.19	7.44	40.96	3.79
154	155	4.952071	TCACCAATTTGGAGCATCAAAA	57.048	36.364	22.19	0.00	43.28	2.44
197	198	8.635765	AAATGCTCTAAACCATGACTCTTTTA	57.364	30.769	0.00	0.00	0.00	1.52
214	215	7.582352	ACTCTTTTATAACGAAAAACCTGAGC	58.418	34.615	0.00	0.00	0.00	4.26
230	231	1.954362	GAGCCAGAGTGAGGACGCAT	61.954	60.000	0.00	0.00	0.00	4.73
272	273	1.346722	CTGGAACTTTCGGTACCACCT	59.653	52.381	13.54	0.00	35.66	4.00
301	308	1.277557	AGGTCAGTCTCTGGTTGCATC	59.722	52.381	0.00	0.00	31.51	3.91
304	311	3.341823	GTCAGTCTCTGGTTGCATCATT	58.658	45.455	0.00	0.00	31.51	2.57
306	313	4.424792	TCAGTCTCTGGTTGCATCATTGC	61.425	47.826	0.00	0.00	39.55	3.56
388	411	5.712446	GGACCTAGGCAAAGAAAAGAATCTT	59.288	40.000	9.30	0.00	41.34	2.40
390	413	7.255977	GGACCTAGGCAAAGAAAAGAATCTTTT	60.256	37.037	19.65	19.65	45.05	2.27
391	414	8.023021	ACCTAGGCAAAGAAAAGAATCTTTTT	57.977	30.769	20.38	9.21	45.05	1.94
420	443	4.720530	GCATGGTGCAAAGAAAGAAAAG	57.279	40.909	0.00	0.00	44.26	2.27
421	444	4.370917	GCATGGTGCAAAGAAAGAAAAGA	58.629	39.130	0.00	0.00	44.26	2.52
422	445	4.810491	GCATGGTGCAAAGAAAGAAAAGAA	59.190	37.500	0.00	0.00	44.26	2.52
423	446	5.467735	GCATGGTGCAAAGAAAGAAAAGAAT	59.532	36.000	0.00	0.00	44.26	2.40
424	447	6.347160	GCATGGTGCAAAGAAAGAAAAGAATC	60.347	38.462	0.00	0.00	44.26	2.52
425	448	6.469782	TGGTGCAAAGAAAGAAAAGAATCT	57.530	33.333	0.00	0.00	0.00	2.40
442	465	4.813027	GAATCTCAATTCTGCAAAAGCCA	58.187	39.130	0.00	0.00	38.61	4.75
443	466	4.877378	ATCTCAATTCTGCAAAAGCCAA	57.123	36.364	0.00	0.00	0.00	4.52
444	467	3.981211	TCTCAATTCTGCAAAAGCCAAC	58.019	40.909	0.00	0.00	0.00	3.77
445	468	2.727798	CTCAATTCTGCAAAAGCCAACG	59.272	45.455	0.00	0.00	0.00	4.10
446	469	1.794116	CAATTCTGCAAAAGCCAACGG	59.206	47.619	0.00	0.00	0.00	4.44
488	512	4.556233	CCGGTGATCGTATTCACACATAT	58.444	43.478	14.52	0.00	46.32	1.78
489	513	5.336134	CCCGGTGATCGTATTCACACATATA	60.336	44.000	0.00	0.00	46.32	0.86
490	514	5.571741	CCGGTGATCGTATTCACACATATAC	59.428	44.000	14.52	0.00	46.32	1.47
491	515	6.379386	CGGTGATCGTATTCACACATATACT	58.621	40.000	14.52	0.00	46.32	2.12
524	548	3.188159	TGCACTTTCTTCCTTGTACGT	57.812	42.857	0.00	0.00	0.00	3.57
580	604	0.396556	TCCCATGAGCTAGCGGTACA	60.397	55.000	9.55	9.04	0.00	2.90
600	624	3.308595	ACACGTATCATATTTGCACACCG	59.691	43.478	0.00	0.00	0.00	4.94
693	720	3.364249	CTCGTCGGTCGGTCACTCG	62.364	68.421	0.00	0.00	40.32	4.18
703	730	3.075005	GTCACTCGGCAGCCCCTA	61.075	66.667	5.63	0.00	0.00	3.53
712	739	0.965866	GGCAGCCCCTACACCTTTTC	60.966	60.000	0.00	0.00	0.00	2.29
719	746	2.369394	CCCTACACCTTTTCTCCATGC	58.631	52.381	0.00	0.00	0.00	4.06
721	748	2.009774	CTACACCTTTTCTCCATGCCG	58.990	52.381	0.00	0.00	0.00	5.69
722	749	0.400213	ACACCTTTTCTCCATGCCGA	59.600	50.000	0.00	0.00	0.00	5.54
723	750	1.004745	ACACCTTTTCTCCATGCCGAT	59.995	47.619	0.00	0.00	0.00	4.18
724	751	1.672881	CACCTTTTCTCCATGCCGATC	59.327	52.381	0.00	0.00	0.00	3.69
775	804	1.916181	GAATCTCCTCCCTTTCCACCA	59.084	52.381	0.00	0.00	0.00	4.17
898	2755	1.266718	CGAACCACACCAACCAATCAG	59.733	52.381	0.00	0.00	0.00	2.90
952	2815	0.319900	TTCAGAGTTCAGGCGCACTC	60.320	55.000	15.69	15.69	39.92	3.51
991	2861	1.608717	ATTCTCGGCTTCTCGGCAGT	61.609	55.000	0.00	0.00	38.27	4.40
998	2868	0.037790	GCTTCTCGGCAGTTCTCTGT	60.038	55.000	0.00	0.00	43.05	3.41
1011	2881	1.478631	TCTCTGTGATGGCATCGTCT	58.521	50.000	21.65	0.00	0.00	4.18
1017	2887	1.144057	GATGGCATCGTCTTCGGGT	59.856	57.895	12.40	0.00	37.69	5.28
1320	3196	3.178046	TGCCTGTGAATAGTTCAGGGTA	58.822	45.455	14.12	3.71	46.03	3.69
1321	3197	3.055385	TGCCTGTGAATAGTTCAGGGTAC	60.055	47.826	14.12	0.00	46.03	3.34
1426	4468	9.587772	TTTTCTTTTTGGAAATTGTTGATACGA	57.412	25.926	0.00	0.00	35.51	3.43
1529	4589	1.610522	GCTTGATGAGTTGTGGCTGTT	59.389	47.619	0.00	0.00	0.00	3.16
1530	4590	2.606308	GCTTGATGAGTTGTGGCTGTTG	60.606	50.000	0.00	0.00	0.00	3.33
1531	4591	2.636647	TGATGAGTTGTGGCTGTTGA	57.363	45.000	0.00	0.00	0.00	3.18
1532	4592	2.221169	TGATGAGTTGTGGCTGTTGAC	58.779	47.619	0.00	0.00	0.00	3.18
1533	4593	1.195448	GATGAGTTGTGGCTGTTGACG	59.805	52.381	0.00	0.00	0.00	4.35
1534	4594	0.813610	TGAGTTGTGGCTGTTGACGG	60.814	55.000	0.00	0.00	0.00	4.79
1535	4595	0.814010	GAGTTGTGGCTGTTGACGGT	60.814	55.000	0.00	0.00	0.00	4.83
1536	4596	0.466543	AGTTGTGGCTGTTGACGGTA	59.533	50.000	0.00	0.00	0.00	4.02
1537	4597	0.865769	GTTGTGGCTGTTGACGGTAG	59.134	55.000	0.00	0.00	0.00	3.18
1538	4598	0.753867	TTGTGGCTGTTGACGGTAGA	59.246	50.000	0.00	0.00	0.00	2.59
1539	4599	0.753867	TGTGGCTGTTGACGGTAGAA	59.246	50.000	0.00	0.00	0.00	2.10
1540	4600	1.139256	TGTGGCTGTTGACGGTAGAAA	59.861	47.619	0.00	0.00	0.00	2.52
1541	4601	1.529865	GTGGCTGTTGACGGTAGAAAC	59.470	52.381	0.00	0.00	0.00	2.78
1542	4602	1.414919	TGGCTGTTGACGGTAGAAACT	59.585	47.619	0.00	0.00	0.00	2.66
1543	4603	2.158871	TGGCTGTTGACGGTAGAAACTT	60.159	45.455	0.00	0.00	0.00	2.66
1588	4648	4.096833	TGTTATTATCTGCTTTGCTGCCTG	59.903	41.667	0.00	0.00	0.00	4.85
1602	4662	0.035152	TGCCTGATGTTACCTGCCAG	60.035	55.000	0.00	0.00	0.00	4.85
1603	4663	1.379642	GCCTGATGTTACCTGCCAGC	61.380	60.000	0.00	0.00	0.00	4.85
1604	4664	0.749454	CCTGATGTTACCTGCCAGCC	60.749	60.000	0.00	0.00	0.00	4.85
1605	4665	0.035152	CTGATGTTACCTGCCAGCCA	60.035	55.000	0.00	0.00	0.00	4.75
1694	5598	2.802816	GTCAAAGTCTGAACTCGCATGT	59.197	45.455	0.00	0.00	35.22	3.21
1704	5608	3.002246	TGAACTCGCATGTTTGTCACTTC	59.998	43.478	0.00	0.00	0.00	3.01
1777	5686	4.715523	GCTACACGGGCCAGGCAA	62.716	66.667	15.19	0.00	0.00	4.52
2062	7342	2.160721	ACAATCCTCCTTCCGCTAGA	57.839	50.000	0.00	0.00	0.00	2.43
2084	7364	1.170442	TGCCTGTCGATTGTACGAGA	58.830	50.000	0.00	0.00	42.88	4.04
2194	7475	3.428282	GGCACGGCCCACTAAACG	61.428	66.667	0.00	0.00	44.06	3.60

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	5.126067	TGAAAAAGACTCAACTCCAAGAGG	58.874	41.667	0.00	0.00	36.20	3.69
72	73	7.088589	TCTTTGAAAAAGACTCAACTCCAAG	57.911	36.000	0.00	0.00	32.61	3.61
76	77	9.657121	CTTACATCTTTGAAAAAGACTCAACTC	57.343	33.333	4.64	0.00	32.61	3.01
81	82	8.345565	TGCTTCTTACATCTTTGAAAAAGACTC	58.654	33.333	4.64	0.00	0.00	3.36
91	92	6.980397	ACCAAAAAGTGCTTCTTACATCTTTG	59.020	34.615	0.00	0.00	35.02	2.77
102	103	7.653311	AGAATTTACATCACCAAAAAGTGCTTC	59.347	33.333	0.00	0.00	37.68	3.86
165	166	9.023962	AGTCATGGTTTAGAGCATTTTCAATAA	57.976	29.630	0.00	0.00	41.82	1.40
171	172	7.530426	AAAGAGTCATGGTTTAGAGCATTTT	57.470	32.000	0.00	0.00	41.82	1.82
187	188	8.665643	TCAGGTTTTTCGTTATAAAAGAGTCA	57.334	30.769	0.00	0.00	30.47	3.41
197	198	4.003648	CTCTGGCTCAGGTTTTTCGTTAT	58.996	43.478	2.86	0.00	31.51	1.89
214	215	1.153489	CCATGCGTCCTCACTCTGG	60.153	63.158	0.00	0.00	0.00	3.86
272	273	3.161067	CAGAGACTGACCTTCTTCCTGA	58.839	50.000	0.00	0.00	32.44	3.86
304	311	4.180817	CAAGTCGTTGGTAGTATCATGCA	58.819	43.478	0.00	0.00	0.00	3.96
399	422	4.370917	TCTTTTCTTTCTTTGCACCATGC	58.629	39.130	0.00	0.00	45.29	4.06
400	423	6.927381	AGATTCTTTTCTTTCTTTGCACCATG	59.073	34.615	0.00	0.00	0.00	3.66
401	424	7.059202	AGATTCTTTTCTTTCTTTGCACCAT	57.941	32.000	0.00	0.00	0.00	3.55
402	425	6.096705	TGAGATTCTTTTCTTTCTTTGCACCA	59.903	34.615	0.00	0.00	0.00	4.17
403	426	6.507023	TGAGATTCTTTTCTTTCTTTGCACC	58.493	36.000	0.00	0.00	0.00	5.01
404	427	7.992180	TTGAGATTCTTTTCTTTCTTTGCAC	57.008	32.000	0.00	0.00	0.00	4.57
405	428	9.252962	GAATTGAGATTCTTTTCTTTCTTTGCA	57.747	29.630	0.00	0.00	38.87	4.08
446	469	1.217244	CTTGGCTGGATGGCTTTGC	59.783	57.895	0.00	0.00	42.34	3.68
447	470	1.217244	GCTTGGCTGGATGGCTTTG	59.783	57.895	0.00	0.00	42.34	2.77
488	512	8.442632	AGAAAGTGCATACGTATGTAGTAGTA	57.557	34.615	30.63	6.26	36.11	1.82
489	513	7.330900	AGAAAGTGCATACGTATGTAGTAGT	57.669	36.000	30.63	21.57	36.11	2.73
490	514	7.378995	GGAAGAAAGTGCATACGTATGTAGTAG	59.621	40.741	30.63	10.16	36.11	2.57
491	515	7.067859	AGGAAGAAAGTGCATACGTATGTAGTA	59.932	37.037	30.63	15.71	36.11	1.82
502	526	4.890088	ACGTACAAGGAAGAAAGTGCATA	58.110	39.130	0.00	0.00	0.00	3.14
545	569	4.079038	TCATGGGAAAATGGATGGTCAGAT	60.079	41.667	0.00	0.00	0.00	2.90
580	604	2.286833	GCGGTGTGCAAATATGATACGT	59.713	45.455	0.00	0.00	45.45	3.57
600	624	3.127533	GATGGTGTCACGGCTGGC	61.128	66.667	0.00	0.00	0.00	4.85
693	720	0.965866	GAAAAGGTGTAGGGGCTGCC	60.966	60.000	11.05	11.05	0.00	4.85
703	730	0.400213	TCGGCATGGAGAAAAGGTGT	59.600	50.000	0.00	0.00	0.00	4.16
712	739	0.250038	ACCAATCGATCGGCATGGAG	60.250	55.000	28.98	12.89	35.16	3.86
719	746	0.103026	TCTGCTGACCAATCGATCGG	59.897	55.000	16.41	0.00	0.00	4.18
721	748	2.831333	ACATCTGCTGACCAATCGATC	58.169	47.619	0.00	0.00	0.00	3.69
722	749	2.996249	ACATCTGCTGACCAATCGAT	57.004	45.000	0.00	0.00	0.00	3.59
723	750	2.495669	TGTACATCTGCTGACCAATCGA	59.504	45.455	0.00	0.00	0.00	3.59
724	751	2.604914	GTGTACATCTGCTGACCAATCG	59.395	50.000	0.00	0.00	0.00	3.34
898	2755	2.067013	GTCTGCTTTAGGACGGTTGAC	58.933	52.381	0.00	0.00	0.00	3.18
919	2777	4.099380	ACTCTGAAGAAACTACTAGCGC	57.901	45.455	0.00	0.00	0.00	5.92
958	2821	1.634702	GAGAATCGAAGACGCTGCTT	58.365	50.000	0.00	0.00	42.51	3.91
991	2861	1.827344	AGACGATGCCATCACAGAGAA	59.173	47.619	5.40	0.00	0.00	2.87
998	2868	1.143838	CCCGAAGACGATGCCATCA	59.856	57.895	5.40	0.00	42.66	3.07
1275	3148	2.287849	TGAGACCAATCGATCGATCAGC	60.288	50.000	29.48	18.51	33.08	4.26
1276	3149	3.632855	TGAGACCAATCGATCGATCAG	57.367	47.619	29.48	24.08	33.08	2.90
1320	3196	6.770746	AGTATAACCTTCGTGTGTCTATGT	57.229	37.500	0.00	0.00	0.00	2.29
1321	3197	9.745880	AATTAGTATAACCTTCGTGTGTCTATG	57.254	33.333	0.00	0.00	0.00	2.23
1529	4589	3.462483	TTGAGCAAGTTTCTACCGTCA	57.538	42.857	0.00	0.00	0.00	4.35
1530	4590	3.746492	ACATTGAGCAAGTTTCTACCGTC	59.254	43.478	0.00	0.00	0.00	4.79
1531	4591	3.740115	ACATTGAGCAAGTTTCTACCGT	58.260	40.909	0.00	0.00	0.00	4.83
1532	4592	4.213270	TGAACATTGAGCAAGTTTCTACCG	59.787	41.667	0.00	0.00	0.00	4.02
1533	4593	5.689383	TGAACATTGAGCAAGTTTCTACC	57.311	39.130	0.00	0.00	0.00	3.18
1534	4594	6.672147	ACATGAACATTGAGCAAGTTTCTAC	58.328	36.000	0.00	0.00	0.00	2.59
1535	4595	6.882610	ACATGAACATTGAGCAAGTTTCTA	57.117	33.333	0.00	0.00	0.00	2.10
1536	4596	5.779529	ACATGAACATTGAGCAAGTTTCT	57.220	34.783	0.00	0.00	0.00	2.52
1537	4597	9.065871	GTATAACATGAACATTGAGCAAGTTTC	57.934	33.333	0.00	0.00	0.00	2.78
1538	4598	7.750458	CGTATAACATGAACATTGAGCAAGTTT	59.250	33.333	0.00	0.00	0.00	2.66
1539	4599	7.094805	ACGTATAACATGAACATTGAGCAAGTT	60.095	33.333	0.00	0.70	0.00	2.66
1540	4600	6.371548	ACGTATAACATGAACATTGAGCAAGT	59.628	34.615	0.00	0.00	0.00	3.16
1541	4601	6.684131	CACGTATAACATGAACATTGAGCAAG	59.316	38.462	0.00	0.00	0.00	4.01
1542	4602	6.148645	ACACGTATAACATGAACATTGAGCAA	59.851	34.615	0.00	0.00	0.00	3.91
1543	4603	5.641636	ACACGTATAACATGAACATTGAGCA	59.358	36.000	0.00	0.00	0.00	4.26
1588	4648	2.222027	GTATGGCTGGCAGGTAACATC	58.778	52.381	17.64	0.00	41.41	3.06
1602	4662	3.243336	GTCCGATTATGAGACGTATGGC	58.757	50.000	0.00	0.00	0.00	4.40
1603	4663	3.489444	CGTCCGATTATGAGACGTATGG	58.511	50.000	3.75	0.00	46.23	2.74
1694	5598	1.562008	TGGGTGTGAGGAAGTGACAAA	59.438	47.619	0.00	0.00	0.00	2.83
2062	7342	1.271379	TCGTACAATCGACAGGCAAGT	59.729	47.619	0.00	0.00	34.85	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.