Multiple sequence alignment - TraesCS5B01G301000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G301000 chr5B 100.000 3059 0 0 1 3059 485912469 485909411 0.000000e+00 5650.0
1 TraesCS5B01G301000 chr2D 82.751 1432 219 15 922 2326 9588218 9589648 0.000000e+00 1251.0
2 TraesCS5B01G301000 chr2D 83.607 1281 184 18 751 2019 8479580 8478314 0.000000e+00 1179.0
3 TraesCS5B01G301000 chr2D 80.735 1443 234 26 920 2326 9380367 9381801 0.000000e+00 1085.0
4 TraesCS5B01G301000 chr2D 79.576 1557 252 39 796 2304 8670487 8672025 0.000000e+00 1053.0
5 TraesCS5B01G301000 chr2D 85.441 261 27 8 142 401 430625505 430625755 8.410000e-66 261.0
6 TraesCS5B01G301000 chr2D 81.759 307 51 5 2021 2326 8689419 8689721 5.060000e-63 252.0
7 TraesCS5B01G301000 chr2D 82.667 225 25 10 189 412 255618783 255618994 1.450000e-43 187.0
8 TraesCS5B01G301000 chr2D 84.483 174 21 6 2493 2662 9372866 9373037 1.890000e-37 167.0
9 TraesCS5B01G301000 chr2D 87.681 138 14 3 2493 2629 9524153 9524288 1.140000e-34 158.0
10 TraesCS5B01G301000 chr2D 87.931 116 11 2 2567 2679 9644419 9644534 1.910000e-27 134.0
11 TraesCS5B01G301000 chr2D 83.000 100 16 1 494 593 9791694 9791596 4.200000e-14 89.8
12 TraesCS5B01G301000 chr2A 81.818 1485 232 25 873 2326 9111244 9109767 0.000000e+00 1212.0
13 TraesCS5B01G301000 chr2A 81.873 1484 222 28 880 2326 8630841 8632314 0.000000e+00 1206.0
14 TraesCS5B01G301000 chr2A 81.103 1487 237 25 870 2326 9982823 9984295 0.000000e+00 1149.0
15 TraesCS5B01G301000 chr2A 80.524 267 41 6 137 401 161954583 161954840 8.650000e-46 195.0
16 TraesCS5B01G301000 chr2A 82.667 225 25 10 189 412 236837506 236837295 1.450000e-43 187.0
17 TraesCS5B01G301000 chr2A 83.125 160 24 3 2496 2653 7513419 7513261 3.180000e-30 143.0
18 TraesCS5B01G301000 chr2A 87.069 116 12 2 2567 2679 8728755 8728870 8.900000e-26 128.0
19 TraesCS5B01G301000 chr2B 80.660 1484 247 22 873 2326 13068630 13067157 0.000000e+00 1114.0
20 TraesCS5B01G301000 chr2B 80.939 1427 240 18 929 2326 12942358 12943781 0.000000e+00 1099.0
21 TraesCS5B01G301000 chr2B 83.753 1151 178 6 875 2019 11226551 11225404 0.000000e+00 1081.0
22 TraesCS5B01G301000 chr2B 80.610 1377 218 19 998 2326 768807004 768805629 0.000000e+00 1018.0
23 TraesCS5B01G301000 chr2B 82.805 1105 174 6 875 1973 11173145 11172051 0.000000e+00 974.0
24 TraesCS5B01G301000 chr2B 79.884 1377 227 25 998 2326 768929424 768928050 0.000000e+00 963.0
25 TraesCS5B01G301000 chr2B 80.719 306 56 3 2021 2326 11420064 11420366 5.100000e-58 235.0
26 TraesCS5B01G301000 chr2B 84.663 163 22 3 2493 2653 768805644 768805483 3.160000e-35 159.0
27 TraesCS5B01G301000 chr2B 83.537 164 22 5 2493 2653 768928065 768927904 6.830000e-32 148.0
28 TraesCS5B01G301000 chr2B 96.226 53 2 0 82 134 13315258 13315206 1.510000e-13 87.9
29 TraesCS5B01G301000 chr2B 94.340 53 3 0 82 134 13181196 13181144 7.030000e-12 82.4
30 TraesCS5B01G301000 chr5D 90.835 611 53 3 400 1009 404501662 404501054 0.000000e+00 815.0
31 TraesCS5B01G301000 chr5D 91.014 345 27 3 2713 3057 404499547 404499207 2.150000e-126 462.0
32 TraesCS5B01G301000 chr5D 92.670 191 13 1 2529 2718 404501055 404500865 1.080000e-69 274.0
33 TraesCS5B01G301000 chr5D 95.238 126 6 0 11 136 404501784 404501659 1.860000e-47 200.0
34 TraesCS5B01G301000 chr5A 89.379 612 63 2 398 1009 509650722 509651331 0.000000e+00 769.0
35 TraesCS5B01G301000 chr5A 89.259 540 47 6 2529 3059 509651330 509651867 0.000000e+00 665.0
36 TraesCS5B01G301000 chr5A 96.552 174 6 0 2328 2501 457431848 457431675 3.860000e-74 289.0
37 TraesCS5B01G301000 chr5A 94.309 123 7 0 11 133 509650599 509650721 4.030000e-44 189.0
38 TraesCS5B01G301000 chr7B 97.633 169 4 0 2327 2495 472508893 472508725 1.070000e-74 291.0
39 TraesCS5B01G301000 chr7B 84.314 102 13 1 137 238 659419677 659419775 2.510000e-16 97.1
40 TraesCS5B01G301000 chr4A 96.571 175 5 1 2321 2494 89423261 89423087 3.860000e-74 289.0
41 TraesCS5B01G301000 chr4A 96.532 173 6 0 2323 2495 479322813 479322985 1.390000e-73 287.0
42 TraesCS5B01G301000 chr6B 96.045 177 6 1 2327 2503 460493635 460493460 1.390000e-73 287.0
43 TraesCS5B01G301000 chr6B 93.333 195 7 4 2317 2508 52572432 52572623 1.800000e-72 283.0
44 TraesCS5B01G301000 chr1B 96.552 174 5 1 2327 2499 666906872 666907045 1.390000e-73 287.0
45 TraesCS5B01G301000 chr3B 96.023 176 6 1 2320 2495 70584014 70583840 4.990000e-73 285.0
46 TraesCS5B01G301000 chr1A 96.023 176 6 1 2320 2495 562740389 562740215 4.990000e-73 285.0
47 TraesCS5B01G301000 chr4D 80.755 265 38 7 132 396 294346214 294346465 8.650000e-46 195.0
48 TraesCS5B01G301000 chr7A 82.128 235 32 6 138 372 202747149 202747373 3.110000e-45 193.0
49 TraesCS5B01G301000 chr4B 80.000 265 40 7 132 396 362143975 362144226 1.870000e-42 183.0
50 TraesCS5B01G301000 chr4B 79.478 268 44 8 137 403 565735136 565735393 2.420000e-41 180.0
51 TraesCS5B01G301000 chr6A 78.545 275 48 8 137 411 134174115 134174378 1.460000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G301000 chr5B 485909411 485912469 3058 True 5650.00 5650 100.000000 1 3059 1 chr5B.!!$R1 3058
1 TraesCS5B01G301000 chr2D 9588218 9589648 1430 False 1251.00 1251 82.751000 922 2326 1 chr2D.!!$F6 1404
2 TraesCS5B01G301000 chr2D 8478314 8479580 1266 True 1179.00 1179 83.607000 751 2019 1 chr2D.!!$R1 1268
3 TraesCS5B01G301000 chr2D 9380367 9381801 1434 False 1085.00 1085 80.735000 920 2326 1 chr2D.!!$F4 1406
4 TraesCS5B01G301000 chr2D 8670487 8672025 1538 False 1053.00 1053 79.576000 796 2304 1 chr2D.!!$F1 1508
5 TraesCS5B01G301000 chr2A 9109767 9111244 1477 True 1212.00 1212 81.818000 873 2326 1 chr2A.!!$R2 1453
6 TraesCS5B01G301000 chr2A 8630841 8632314 1473 False 1206.00 1206 81.873000 880 2326 1 chr2A.!!$F1 1446
7 TraesCS5B01G301000 chr2A 9982823 9984295 1472 False 1149.00 1149 81.103000 870 2326 1 chr2A.!!$F3 1456
8 TraesCS5B01G301000 chr2B 13067157 13068630 1473 True 1114.00 1114 80.660000 873 2326 1 chr2B.!!$R3 1453
9 TraesCS5B01G301000 chr2B 12942358 12943781 1423 False 1099.00 1099 80.939000 929 2326 1 chr2B.!!$F2 1397
10 TraesCS5B01G301000 chr2B 11225404 11226551 1147 True 1081.00 1081 83.753000 875 2019 1 chr2B.!!$R2 1144
11 TraesCS5B01G301000 chr2B 11172051 11173145 1094 True 974.00 974 82.805000 875 1973 1 chr2B.!!$R1 1098
12 TraesCS5B01G301000 chr2B 768805483 768807004 1521 True 588.50 1018 82.636500 998 2653 2 chr2B.!!$R6 1655
13 TraesCS5B01G301000 chr2B 768927904 768929424 1520 True 555.50 963 81.710500 998 2653 2 chr2B.!!$R7 1655
14 TraesCS5B01G301000 chr5D 404499207 404501784 2577 True 437.75 815 92.439250 11 3057 4 chr5D.!!$R1 3046
15 TraesCS5B01G301000 chr5A 509650599 509651867 1268 False 541.00 769 90.982333 11 3059 3 chr5A.!!$F1 3048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 562 0.320334 CCCCAAACAATTTCCACGGC 60.32 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2475 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.357652 CTTGTTGTTTCAAATAGGATTACCATG 57.642 33.333 0.00 0.00 38.94 3.66
37 38 5.645056 TCAAATAGGATTACCATGAGGCA 57.355 39.130 0.00 0.00 39.06 4.75
76 77 5.769835 AGAATGCATTGGATTAGGGAGAAA 58.230 37.500 18.59 0.00 0.00 2.52
103 104 5.105146 ACCAAAGGAGCAAATGTACAAACAA 60.105 36.000 0.00 0.00 39.58 2.83
133 134 5.606348 ACATGTCCTCTGGAAGATTACTC 57.394 43.478 0.00 0.00 45.62 2.59
134 135 4.407296 ACATGTCCTCTGGAAGATTACTCC 59.593 45.833 0.00 0.00 45.62 3.85
135 136 4.338795 TGTCCTCTGGAAGATTACTCCT 57.661 45.455 0.00 0.00 45.62 3.69
136 137 4.689062 TGTCCTCTGGAAGATTACTCCTT 58.311 43.478 0.00 0.00 45.62 3.36
137 138 4.712337 TGTCCTCTGGAAGATTACTCCTTC 59.288 45.833 0.00 0.00 45.62 3.46
144 145 4.739587 GAAGATTACTCCTTCCTCCGTT 57.260 45.455 0.00 0.00 35.26 4.44
145 146 5.848833 GAAGATTACTCCTTCCTCCGTTA 57.151 43.478 0.00 0.00 35.26 3.18
146 147 5.590145 GAAGATTACTCCTTCCTCCGTTAC 58.410 45.833 0.00 0.00 35.26 2.50
147 148 4.607239 AGATTACTCCTTCCTCCGTTACA 58.393 43.478 0.00 0.00 0.00 2.41
148 149 5.021458 AGATTACTCCTTCCTCCGTTACAA 58.979 41.667 0.00 0.00 0.00 2.41
149 150 5.482878 AGATTACTCCTTCCTCCGTTACAAA 59.517 40.000 0.00 0.00 0.00 2.83
150 151 5.549742 TTACTCCTTCCTCCGTTACAAAA 57.450 39.130 0.00 0.00 0.00 2.44
151 152 4.635699 ACTCCTTCCTCCGTTACAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
152 153 5.750352 ACTCCTTCCTCCGTTACAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
153 154 6.309389 ACTCCTTCCTCCGTTACAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
154 155 6.718294 ACTCCTTCCTCCGTTACAAAATATT 58.282 36.000 0.00 0.00 0.00 1.28
155 156 7.173032 ACTCCTTCCTCCGTTACAAAATATTT 58.827 34.615 0.00 0.00 0.00 1.40
156 157 7.120726 ACTCCTTCCTCCGTTACAAAATATTTG 59.879 37.037 0.39 1.47 0.00 2.32
157 158 7.169591 TCCTTCCTCCGTTACAAAATATTTGA 58.830 34.615 9.62 0.00 0.00 2.69
158 159 7.666388 TCCTTCCTCCGTTACAAAATATTTGAA 59.334 33.333 9.62 0.00 0.00 2.69
159 160 7.968405 CCTTCCTCCGTTACAAAATATTTGAAG 59.032 37.037 9.62 6.13 0.00 3.02
160 161 7.989416 TCCTCCGTTACAAAATATTTGAAGT 57.011 32.000 9.62 4.22 0.00 3.01
161 162 8.398878 TCCTCCGTTACAAAATATTTGAAGTT 57.601 30.769 9.62 0.00 0.00 2.66
162 163 8.508875 TCCTCCGTTACAAAATATTTGAAGTTC 58.491 33.333 9.62 0.00 0.00 3.01
163 164 8.512138 CCTCCGTTACAAAATATTTGAAGTTCT 58.488 33.333 9.62 0.00 0.00 3.01
166 167 9.274065 CCGTTACAAAATATTTGAAGTTCTAGC 57.726 33.333 9.62 0.00 0.00 3.42
173 174 9.914131 AAAATATTTGAAGTTCTAGCTTTGTCC 57.086 29.630 0.39 0.00 0.00 4.02
174 175 8.870075 AATATTTGAAGTTCTAGCTTTGTCCT 57.130 30.769 4.17 0.00 0.00 3.85
175 176 9.959721 AATATTTGAAGTTCTAGCTTTGTCCTA 57.040 29.630 4.17 0.00 0.00 2.94
176 177 7.913674 ATTTGAAGTTCTAGCTTTGTCCTAG 57.086 36.000 4.17 0.00 34.86 3.02
177 178 5.407407 TGAAGTTCTAGCTTTGTCCTAGG 57.593 43.478 0.82 0.82 34.43 3.02
178 179 4.838986 TGAAGTTCTAGCTTTGTCCTAGGT 59.161 41.667 9.08 0.00 34.43 3.08
179 180 5.047235 TGAAGTTCTAGCTTTGTCCTAGGTC 60.047 44.000 9.08 3.43 34.43 3.85
180 181 4.679331 AGTTCTAGCTTTGTCCTAGGTCT 58.321 43.478 9.08 0.80 34.43 3.85
181 182 5.828871 AGTTCTAGCTTTGTCCTAGGTCTA 58.171 41.667 9.08 0.00 34.43 2.59
182 183 6.254522 AGTTCTAGCTTTGTCCTAGGTCTAA 58.745 40.000 9.08 5.70 34.43 2.10
183 184 6.898521 AGTTCTAGCTTTGTCCTAGGTCTAAT 59.101 38.462 9.08 0.00 34.43 1.73
184 185 7.400627 AGTTCTAGCTTTGTCCTAGGTCTAATT 59.599 37.037 9.08 1.39 34.43 1.40
185 186 7.735326 TCTAGCTTTGTCCTAGGTCTAATTT 57.265 36.000 9.08 1.07 34.43 1.82
186 187 8.147244 TCTAGCTTTGTCCTAGGTCTAATTTT 57.853 34.615 9.08 0.00 34.43 1.82
187 188 8.258708 TCTAGCTTTGTCCTAGGTCTAATTTTC 58.741 37.037 9.08 0.00 34.43 2.29
188 189 7.021998 AGCTTTGTCCTAGGTCTAATTTTCT 57.978 36.000 9.08 0.00 0.00 2.52
189 190 6.881602 AGCTTTGTCCTAGGTCTAATTTTCTG 59.118 38.462 9.08 0.00 0.00 3.02
190 191 6.879458 GCTTTGTCCTAGGTCTAATTTTCTGA 59.121 38.462 9.08 0.00 0.00 3.27
191 192 7.390718 GCTTTGTCCTAGGTCTAATTTTCTGAA 59.609 37.037 9.08 0.00 0.00 3.02
192 193 8.848474 TTTGTCCTAGGTCTAATTTTCTGAAG 57.152 34.615 9.08 0.00 0.00 3.02
193 194 7.554959 TGTCCTAGGTCTAATTTTCTGAAGT 57.445 36.000 9.08 0.00 0.00 3.01
194 195 7.974504 TGTCCTAGGTCTAATTTTCTGAAGTT 58.025 34.615 9.08 0.00 0.00 2.66
195 196 8.437575 TGTCCTAGGTCTAATTTTCTGAAGTTT 58.562 33.333 9.08 0.00 0.00 2.66
196 197 8.722394 GTCCTAGGTCTAATTTTCTGAAGTTTG 58.278 37.037 9.08 0.00 0.00 2.93
197 198 8.656806 TCCTAGGTCTAATTTTCTGAAGTTTGA 58.343 33.333 9.08 0.00 0.00 2.69
198 199 8.722394 CCTAGGTCTAATTTTCTGAAGTTTGAC 58.278 37.037 16.16 16.16 36.90 3.18
199 200 7.511959 AGGTCTAATTTTCTGAAGTTTGACC 57.488 36.000 25.33 25.33 46.99 4.02
200 201 7.272037 GGTCTAATTTTCTGAAGTTTGACCA 57.728 36.000 26.43 0.25 46.46 4.02
201 202 7.712797 GGTCTAATTTTCTGAAGTTTGACCAA 58.287 34.615 26.43 7.46 46.46 3.67
202 203 8.194769 GGTCTAATTTTCTGAAGTTTGACCAAA 58.805 33.333 26.43 6.94 46.46 3.28
203 204 9.750125 GTCTAATTTTCTGAAGTTTGACCAAAT 57.250 29.630 14.77 0.00 34.02 2.32
232 233 7.506328 AGAAAAACCTACTAATGTCCACAAC 57.494 36.000 0.00 0.00 0.00 3.32
233 234 7.057894 AGAAAAACCTACTAATGTCCACAACA 58.942 34.615 0.00 0.00 43.51 3.33
248 249 9.812347 ATGTCCACAACATCAAATATATATGGT 57.188 29.630 0.00 0.00 45.78 3.55
290 291 8.515695 TGATGAATGCTGAATCTAATGAAACT 57.484 30.769 0.00 0.00 0.00 2.66
291 292 9.617523 TGATGAATGCTGAATCTAATGAAACTA 57.382 29.630 0.00 0.00 0.00 2.24
298 299 9.023962 TGCTGAATCTAATGAAACTAATTTGGT 57.976 29.630 0.00 0.00 0.00 3.67
299 300 9.294030 GCTGAATCTAATGAAACTAATTTGGTG 57.706 33.333 0.00 0.00 0.00 4.17
308 309 9.912634 AATGAAACTAATTTGGTGTTGTAGATG 57.087 29.630 0.00 0.00 0.00 2.90
309 310 8.458573 TGAAACTAATTTGGTGTTGTAGATGT 57.541 30.769 0.00 0.00 0.00 3.06
310 311 8.908903 TGAAACTAATTTGGTGTTGTAGATGTT 58.091 29.630 0.00 0.00 0.00 2.71
311 312 9.180678 GAAACTAATTTGGTGTTGTAGATGTTG 57.819 33.333 0.00 0.00 0.00 3.33
312 313 7.214467 ACTAATTTGGTGTTGTAGATGTTGG 57.786 36.000 0.00 0.00 0.00 3.77
313 314 6.775629 ACTAATTTGGTGTTGTAGATGTTGGT 59.224 34.615 0.00 0.00 0.00 3.67
314 315 7.940137 ACTAATTTGGTGTTGTAGATGTTGGTA 59.060 33.333 0.00 0.00 0.00 3.25
315 316 7.775053 AATTTGGTGTTGTAGATGTTGGTAT 57.225 32.000 0.00 0.00 0.00 2.73
316 317 8.871629 AATTTGGTGTTGTAGATGTTGGTATA 57.128 30.769 0.00 0.00 0.00 1.47
317 318 9.474313 AATTTGGTGTTGTAGATGTTGGTATAT 57.526 29.630 0.00 0.00 0.00 0.86
318 319 8.871629 TTTGGTGTTGTAGATGTTGGTATATT 57.128 30.769 0.00 0.00 0.00 1.28
319 320 8.871629 TTGGTGTTGTAGATGTTGGTATATTT 57.128 30.769 0.00 0.00 0.00 1.40
320 321 8.871629 TGGTGTTGTAGATGTTGGTATATTTT 57.128 30.769 0.00 0.00 0.00 1.82
321 322 9.303116 TGGTGTTGTAGATGTTGGTATATTTTT 57.697 29.630 0.00 0.00 0.00 1.94
340 341 5.715434 TTTTTCTGTATACCTGGCCAAAC 57.285 39.130 7.01 0.69 0.00 2.93
341 342 4.374689 TTTCTGTATACCTGGCCAAACA 57.625 40.909 7.01 5.66 0.00 2.83
342 343 4.584638 TTCTGTATACCTGGCCAAACAT 57.415 40.909 7.01 2.09 0.00 2.71
343 344 5.702065 TTCTGTATACCTGGCCAAACATA 57.298 39.130 7.01 1.00 0.00 2.29
344 345 5.702065 TCTGTATACCTGGCCAAACATAA 57.298 39.130 7.01 0.00 0.00 1.90
345 346 6.068461 TCTGTATACCTGGCCAAACATAAA 57.932 37.500 7.01 0.00 0.00 1.40
346 347 6.119536 TCTGTATACCTGGCCAAACATAAAG 58.880 40.000 7.01 8.74 0.00 1.85
347 348 6.068461 TGTATACCTGGCCAAACATAAAGA 57.932 37.500 7.01 0.00 0.00 2.52
348 349 6.486056 TGTATACCTGGCCAAACATAAAGAA 58.514 36.000 7.01 0.00 0.00 2.52
349 350 6.601613 TGTATACCTGGCCAAACATAAAGAAG 59.398 38.462 7.01 0.00 0.00 2.85
350 351 3.844640 ACCTGGCCAAACATAAAGAAGT 58.155 40.909 7.01 0.00 0.00 3.01
351 352 4.223144 ACCTGGCCAAACATAAAGAAGTT 58.777 39.130 7.01 0.00 0.00 2.66
352 353 4.653801 ACCTGGCCAAACATAAAGAAGTTT 59.346 37.500 7.01 0.00 38.40 2.66
363 364 8.974060 AACATAAAGAAGTTTGACTTAGGACA 57.026 30.769 0.00 0.00 38.80 4.02
364 365 8.974060 ACATAAAGAAGTTTGACTTAGGACAA 57.026 30.769 0.00 0.00 38.80 3.18
365 366 9.403583 ACATAAAGAAGTTTGACTTAGGACAAA 57.596 29.630 0.00 0.00 38.80 2.83
387 388 9.981114 ACAAACCTAGAACTTCAAATATTTTGG 57.019 29.630 0.00 0.00 0.00 3.28
391 392 9.362151 ACCTAGAACTTCAAATATTTTGGAACA 57.638 29.630 0.00 0.00 0.00 3.18
392 393 9.846248 CCTAGAACTTCAAATATTTTGGAACAG 57.154 33.333 0.00 0.00 42.39 3.16
395 396 8.579863 AGAACTTCAAATATTTTGGAACAGAGG 58.420 33.333 0.00 0.00 42.39 3.69
396 397 7.232118 ACTTCAAATATTTTGGAACAGAGGG 57.768 36.000 0.00 0.00 42.39 4.30
403 404 4.351874 TTTTGGAACAGAGGGAGTACTG 57.648 45.455 0.00 0.00 42.39 2.74
472 473 4.436332 TGGAGTTGTGATTCTCATCATCG 58.564 43.478 0.00 0.00 41.64 3.84
532 533 0.790814 GCTTTCTCCACCGAAGTTCG 59.209 55.000 18.40 18.40 40.07 3.95
561 562 0.320334 CCCCAAACAATTTCCACGGC 60.320 55.000 0.00 0.00 0.00 5.68
562 563 0.678950 CCCAAACAATTTCCACGGCT 59.321 50.000 0.00 0.00 0.00 5.52
570 571 5.270893 ACAATTTCCACGGCTAAACTTTT 57.729 34.783 0.00 0.00 0.00 2.27
598 599 7.611770 AGAACAGAGTGCACATATGTAAAGTA 58.388 34.615 21.04 0.00 0.00 2.24
614 615 8.611051 ATGTAAAGTATAGAAGGAGTCCAAGT 57.389 34.615 12.86 0.00 0.00 3.16
616 617 8.964772 TGTAAAGTATAGAAGGAGTCCAAGTAC 58.035 37.037 12.86 6.98 0.00 2.73
641 642 5.034554 ACACGTGCAAAGATAATTGACAG 57.965 39.130 17.22 0.00 31.84 3.51
660 661 8.958175 TTGACAGCAGTTAATTTTTATTACCG 57.042 30.769 0.00 0.00 0.00 4.02
704 705 9.935241 GATATCATCCAGTCATATGTAAAGTGT 57.065 33.333 1.90 0.00 0.00 3.55
735 736 5.885912 AGTCCAACGGCAGATAAATACAAAT 59.114 36.000 0.00 0.00 0.00 2.32
739 740 9.214957 TCCAACGGCAGATAAATACAAATATAG 57.785 33.333 0.00 0.00 0.00 1.31
740 741 8.999431 CCAACGGCAGATAAATACAAATATAGT 58.001 33.333 0.00 0.00 0.00 2.12
756 757 8.745590 ACAAATATAGTTAACAAACATGGACCC 58.254 33.333 8.61 0.00 0.00 4.46
774 775 4.514066 GGACCCACCGTGAATATCAAATAC 59.486 45.833 0.00 0.00 0.00 1.89
777 778 4.515191 CCCACCGTGAATATCAAATACTGG 59.485 45.833 0.00 0.00 0.00 4.00
826 829 2.039613 TGGCTTGTCCACATCACATGTA 59.960 45.455 0.00 0.00 42.70 2.29
842 846 7.899178 TCACATGTATTGACGTTTAGACAAT 57.101 32.000 0.00 4.99 44.76 2.71
856 860 6.475727 CGTTTAGACAATTATCCGTGAGTCAT 59.524 38.462 0.00 0.00 0.00 3.06
858 862 4.611943 AGACAATTATCCGTGAGTCATCG 58.388 43.478 0.00 2.06 0.00 3.84
861 865 1.107945 TTATCCGTGAGTCATCGGCA 58.892 50.000 21.91 14.47 45.44 5.69
943 951 1.449246 GCGAGACTTGGCAGATGCT 60.449 57.895 4.59 0.00 41.70 3.79
944 952 1.023513 GCGAGACTTGGCAGATGCTT 61.024 55.000 4.59 0.00 41.70 3.91
945 953 1.446907 CGAGACTTGGCAGATGCTTT 58.553 50.000 4.59 0.00 41.70 3.51
956 964 4.700213 TGGCAGATGCTTTCCTAGTTAAAC 59.300 41.667 4.59 0.00 41.70 2.01
1049 1057 3.181506 GGAGAAATTGTGAGCCGATTCAC 60.182 47.826 11.02 11.02 46.02 3.18
1053 1061 0.976641 TTGTGAGCCGATTCACCTCT 59.023 50.000 14.12 0.00 45.40 3.69
1055 1063 1.066858 TGTGAGCCGATTCACCTCTTC 60.067 52.381 14.12 0.00 45.40 2.87
1091 1105 3.296709 ATTCGAGCCGTCCACGCTT 62.297 57.895 0.00 0.00 38.18 4.68
1173 1190 0.249073 AGGCAGACACGCGATACATC 60.249 55.000 15.93 2.14 0.00 3.06
1181 1198 1.999735 CACGCGATACATCACCAACTT 59.000 47.619 15.93 0.00 0.00 2.66
1209 1226 0.321034 TGATGCAGCTCAAGACGCTT 60.321 50.000 2.53 0.00 35.07 4.68
1260 1278 0.682852 TGGACAACTTGAGGTACCGG 59.317 55.000 6.18 0.00 0.00 5.28
1262 1280 0.683412 GACAACTTGAGGTACCGGGT 59.317 55.000 6.32 4.46 0.00 5.28
1304 1322 5.371115 TTTGACAAGGTTAGCAGTAATGC 57.629 39.130 7.15 7.15 0.00 3.56
1307 1325 4.010349 GACAAGGTTAGCAGTAATGCCTT 58.990 43.478 12.26 5.06 36.85 4.35
1329 1347 6.071840 CCTTATCTAGTAGCGGCTTGTATCTT 60.072 42.308 8.26 0.00 0.00 2.40
1349 1379 0.517316 GCCAAGCGTTCTCGAACAAT 59.483 50.000 10.10 0.00 41.20 2.71
1354 1393 4.084013 CCAAGCGTTCTCGAACAATAACTT 60.084 41.667 10.10 3.03 41.20 2.66
1492 1540 7.309194 GGCCATATGATGTTTATCTTTACACCC 60.309 40.741 3.65 0.00 34.31 4.61
1550 1599 1.923316 GCTCTTGAGCTTGTTGTTGCG 60.923 52.381 14.65 0.00 0.00 4.85
1604 1653 4.750598 GGAAGTTCTTCCGATTATAGGTGC 59.249 45.833 14.61 0.00 0.00 5.01
1623 1672 3.084039 TGCTGCAGTAATTGGGAAGAAG 58.916 45.455 16.64 0.00 0.00 2.85
1709 1761 2.851195 TGGAGACAGCCTTTTGAGAAC 58.149 47.619 0.00 0.00 35.01 3.01
1781 1836 1.204704 TGCTTCTGATGTAGGTGACGG 59.795 52.381 0.00 0.00 0.00 4.79
1848 1903 5.706369 AGGAAGCAAGATCATCATCATAAGC 59.294 40.000 0.00 0.00 0.00 3.09
1878 1933 2.127708 AGATTAGCCCGGTTTGGATCT 58.872 47.619 0.00 0.00 42.00 2.75
1879 1934 2.509964 AGATTAGCCCGGTTTGGATCTT 59.490 45.455 0.00 0.00 42.00 2.40
1898 1953 7.231722 TGGATCTTTGAAACCGATTTTCCTAAA 59.768 33.333 6.92 2.63 42.80 1.85
1943 1998 5.112129 AGGTACTTTTTCAAGACACTGGT 57.888 39.130 0.00 0.00 27.25 4.00
1982 2037 0.811616 GCAGAACATCCACGGCTAGG 60.812 60.000 0.00 0.00 0.00 3.02
1993 2048 1.409064 CACGGCTAGGACAGATAGCAA 59.591 52.381 7.23 0.00 46.07 3.91
2013 2070 5.347012 CAAATGAATTTGCCAAGGTGTTC 57.653 39.130 2.99 0.00 40.42 3.18
2068 2145 5.546526 AGAAGAGACCTTGATGTTCAGTTC 58.453 41.667 0.00 0.00 31.62 3.01
2104 2181 4.766375 TGGACAAGGGAATAAGATTCGTC 58.234 43.478 0.00 0.00 0.00 4.20
2114 2191 6.819146 GGGAATAAGATTCGTCAGAAGAAACT 59.181 38.462 2.68 3.11 40.09 2.66
2142 2222 0.543174 TATGGTTTGCCCCCAACCAC 60.543 55.000 6.67 0.00 36.03 4.16
2152 2235 2.421529 GCCCCCAACCACACTTATAGAG 60.422 54.545 0.00 0.00 0.00 2.43
2161 2244 2.939103 CACACTTATAGAGCAAGGCCAC 59.061 50.000 5.01 0.00 0.00 5.01
2164 2247 0.468226 TTATAGAGCAAGGCCACCCG 59.532 55.000 5.01 0.00 35.76 5.28
2192 2275 4.281688 ACATAACAGACCTTGCTTTGCATT 59.718 37.500 0.00 0.00 38.76 3.56
2229 2312 8.330302 ACACGTTGTACAATTAATGTTTCAAC 57.670 30.769 12.26 13.84 43.74 3.18
2306 2389 7.809806 GTGTTAGACCCAAAGAAGATTTCATTG 59.190 37.037 1.05 1.05 37.92 2.82
2307 2390 5.397142 AGACCCAAAGAAGATTTCATTGC 57.603 39.130 2.25 0.00 37.12 3.56
2320 2403 4.524316 TTTCATTGCAACTTCATGGGAG 57.476 40.909 0.00 0.00 0.00 4.30
2326 2409 2.106338 TGCAACTTCATGGGAGTCAAGA 59.894 45.455 0.00 0.00 0.00 3.02
2327 2410 2.746362 GCAACTTCATGGGAGTCAAGAG 59.254 50.000 0.00 0.00 0.00 2.85
2328 2411 3.557898 GCAACTTCATGGGAGTCAAGAGA 60.558 47.826 0.00 0.00 0.00 3.10
2329 2412 4.252073 CAACTTCATGGGAGTCAAGAGAG 58.748 47.826 0.00 0.00 0.00 3.20
2330 2413 2.836981 ACTTCATGGGAGTCAAGAGAGG 59.163 50.000 0.00 0.00 0.00 3.69
2331 2414 1.871418 TCATGGGAGTCAAGAGAGGG 58.129 55.000 0.00 0.00 0.00 4.30
2332 2415 0.179936 CATGGGAGTCAAGAGAGGGC 59.820 60.000 0.00 0.00 0.00 5.19
2333 2416 0.252881 ATGGGAGTCAAGAGAGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
2334 2417 0.906756 TGGGAGTCAAGAGAGGGCAG 60.907 60.000 0.00 0.00 0.00 4.85
2335 2418 1.621672 GGGAGTCAAGAGAGGGCAGG 61.622 65.000 0.00 0.00 0.00 4.85
2336 2419 1.220477 GAGTCAAGAGAGGGCAGGC 59.780 63.158 0.00 0.00 0.00 4.85
2337 2420 2.250741 GAGTCAAGAGAGGGCAGGCC 62.251 65.000 4.33 4.33 0.00 5.19
2338 2421 2.123632 TCAAGAGAGGGCAGGCCT 59.876 61.111 17.36 17.36 36.10 5.19
2339 2422 2.271497 CAAGAGAGGGCAGGCCTG 59.729 66.667 29.34 29.34 36.10 4.85
2340 2423 3.013932 AAGAGAGGGCAGGCCTGG 61.014 66.667 33.46 15.81 36.10 4.45
2349 2432 3.706373 CAGGCCTGGCGTAGTGGT 61.706 66.667 26.14 0.00 0.00 4.16
2350 2433 3.706373 AGGCCTGGCGTAGTGGTG 61.706 66.667 12.95 0.00 0.00 4.17
2351 2434 3.702048 GGCCTGGCGTAGTGGTGA 61.702 66.667 13.40 0.00 0.00 4.02
2352 2435 2.345991 GCCTGGCGTAGTGGTGAA 59.654 61.111 1.35 0.00 0.00 3.18
2353 2436 1.741770 GCCTGGCGTAGTGGTGAAG 60.742 63.158 1.35 0.00 0.00 3.02
2354 2437 1.671742 CCTGGCGTAGTGGTGAAGT 59.328 57.895 0.00 0.00 0.00 3.01
2355 2438 0.389948 CCTGGCGTAGTGGTGAAGTC 60.390 60.000 0.00 0.00 0.00 3.01
2356 2439 0.389948 CTGGCGTAGTGGTGAAGTCC 60.390 60.000 0.00 0.00 0.00 3.85
2357 2440 0.830444 TGGCGTAGTGGTGAAGTCCT 60.830 55.000 0.00 0.00 0.00 3.85
2358 2441 0.108756 GGCGTAGTGGTGAAGTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
2359 2442 0.108756 GCGTAGTGGTGAAGTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
2360 2443 0.531200 CGTAGTGGTGAAGTCCTCCC 59.469 60.000 0.00 0.00 0.00 4.30
2361 2444 0.903236 GTAGTGGTGAAGTCCTCCCC 59.097 60.000 0.00 0.00 0.00 4.81
2362 2445 0.490017 TAGTGGTGAAGTCCTCCCCA 59.510 55.000 0.00 0.00 0.00 4.96
2363 2446 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
2364 2447 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
2365 2448 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
2366 2449 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
2367 2450 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
2368 2451 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
2369 2452 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
2370 2453 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
2371 2454 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
2372 2455 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
2373 2456 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
2374 2457 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
2375 2458 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
2376 2459 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
2377 2460 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
2378 2461 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
2379 2462 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
2380 2463 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
2381 2464 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
2382 2465 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
2383 2466 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
2384 2467 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2385 2468 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2386 2469 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
2387 2470 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2388 2471 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2389 2472 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2390 2473 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2401 2484 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
2402 2485 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
2403 2486 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
2404 2487 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
2405 2488 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
2406 2489 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
2407 2490 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
2408 2491 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
2409 2492 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
2410 2493 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
2411 2494 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
2412 2495 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
2413 2496 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
2414 2497 1.884579 CCTCTCTGCATTGCACTTTGT 59.115 47.619 7.38 0.00 33.79 2.83
2415 2498 3.076621 CCTCTCTGCATTGCACTTTGTA 58.923 45.455 7.38 0.00 33.79 2.41
2416 2499 3.126514 CCTCTCTGCATTGCACTTTGTAG 59.873 47.826 7.38 0.00 33.79 2.74
2417 2500 3.076621 TCTCTGCATTGCACTTTGTAGG 58.923 45.455 7.38 0.00 33.79 3.18
2418 2501 2.161855 TCTGCATTGCACTTTGTAGGG 58.838 47.619 7.38 0.00 33.79 3.53
2419 2502 1.203052 CTGCATTGCACTTTGTAGGGG 59.797 52.381 7.38 0.00 33.79 4.79
2420 2503 1.256812 GCATTGCACTTTGTAGGGGT 58.743 50.000 3.15 0.00 0.00 4.95
2421 2504 2.224892 TGCATTGCACTTTGTAGGGGTA 60.225 45.455 7.38 0.00 31.71 3.69
2422 2505 2.823154 GCATTGCACTTTGTAGGGGTAA 59.177 45.455 3.15 0.00 0.00 2.85
2423 2506 3.119495 GCATTGCACTTTGTAGGGGTAAG 60.119 47.826 3.15 0.00 0.00 2.34
2424 2507 4.331968 CATTGCACTTTGTAGGGGTAAGA 58.668 43.478 0.00 0.00 0.00 2.10
2425 2508 3.412237 TGCACTTTGTAGGGGTAAGAC 57.588 47.619 0.00 0.00 0.00 3.01
2426 2509 2.976882 TGCACTTTGTAGGGGTAAGACT 59.023 45.455 0.00 0.00 0.00 3.24
2427 2510 4.161876 TGCACTTTGTAGGGGTAAGACTA 58.838 43.478 0.00 0.00 0.00 2.59
2428 2511 4.781087 TGCACTTTGTAGGGGTAAGACTAT 59.219 41.667 0.00 0.00 0.00 2.12
2429 2512 5.116882 GCACTTTGTAGGGGTAAGACTATG 58.883 45.833 0.00 0.00 0.00 2.23
2430 2513 5.338137 GCACTTTGTAGGGGTAAGACTATGT 60.338 44.000 0.00 0.00 0.00 2.29
2431 2514 6.708285 CACTTTGTAGGGGTAAGACTATGTT 58.292 40.000 0.00 0.00 0.00 2.71
2432 2515 6.817140 CACTTTGTAGGGGTAAGACTATGTTC 59.183 42.308 0.00 0.00 0.00 3.18
2433 2516 6.729569 ACTTTGTAGGGGTAAGACTATGTTCT 59.270 38.462 0.00 0.00 0.00 3.01
2434 2517 7.237055 ACTTTGTAGGGGTAAGACTATGTTCTT 59.763 37.037 0.00 0.00 39.28 2.52
2435 2518 8.669055 TTTGTAGGGGTAAGACTATGTTCTTA 57.331 34.615 0.00 0.00 37.09 2.10
2436 2519 8.849543 TTGTAGGGGTAAGACTATGTTCTTAT 57.150 34.615 2.24 0.00 39.67 1.73
2437 2520 9.940974 TTGTAGGGGTAAGACTATGTTCTTATA 57.059 33.333 2.24 0.00 39.67 0.98
2438 2521 9.940974 TGTAGGGGTAAGACTATGTTCTTATAA 57.059 33.333 2.24 0.00 39.67 0.98
2441 2524 9.102453 AGGGGTAAGACTATGTTCTTATAATCC 57.898 37.037 2.24 0.11 39.67 3.01
2442 2525 8.033626 GGGGTAAGACTATGTTCTTATAATCCG 58.966 40.741 2.24 0.00 39.67 4.18
2443 2526 8.583296 GGGTAAGACTATGTTCTTATAATCCGT 58.417 37.037 2.24 0.00 39.67 4.69
2444 2527 9.623350 GGTAAGACTATGTTCTTATAATCCGTC 57.377 37.037 2.24 0.00 39.67 4.79
2445 2528 9.623350 GTAAGACTATGTTCTTATAATCCGTCC 57.377 37.037 2.24 0.00 39.67 4.79
2446 2529 7.229581 AGACTATGTTCTTATAATCCGTCCC 57.770 40.000 0.00 0.00 0.00 4.46
2447 2530 6.210984 AGACTATGTTCTTATAATCCGTCCCC 59.789 42.308 0.00 0.00 0.00 4.81
2448 2531 5.842328 ACTATGTTCTTATAATCCGTCCCCA 59.158 40.000 0.00 0.00 0.00 4.96
2449 2532 4.682778 TGTTCTTATAATCCGTCCCCAG 57.317 45.455 0.00 0.00 0.00 4.45
2450 2533 4.291792 TGTTCTTATAATCCGTCCCCAGA 58.708 43.478 0.00 0.00 0.00 3.86
2451 2534 4.100498 TGTTCTTATAATCCGTCCCCAGAC 59.900 45.833 0.00 0.00 39.83 3.51
2452 2535 3.236896 TCTTATAATCCGTCCCCAGACC 58.763 50.000 0.00 0.00 40.12 3.85
2453 2536 2.019807 TATAATCCGTCCCCAGACCC 57.980 55.000 0.00 0.00 40.12 4.46
2454 2537 0.767060 ATAATCCGTCCCCAGACCCC 60.767 60.000 0.00 0.00 40.12 4.95
2455 2538 2.184194 TAATCCGTCCCCAGACCCCA 62.184 60.000 0.00 0.00 40.12 4.96
2459 2542 2.531942 GTCCCCAGACCCCACCTT 60.532 66.667 0.00 0.00 37.00 3.50
2460 2543 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
2461 2544 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
2462 2545 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
2463 2546 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
2464 2547 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
2471 2554 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
2472 2555 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
2473 2556 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
2474 2557 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
2475 2558 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
2476 2559 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
2477 2560 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
2478 2561 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
2479 2562 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
2480 2563 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
2481 2564 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
2482 2565 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2483 2566 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
2484 2567 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
2485 2568 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
2486 2569 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
2487 2570 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
2488 2571 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2489 2572 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
2490 2573 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
2491 2574 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
2492 2575 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
2493 2576 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
2494 2577 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
2495 2578 1.239347 GCACTGGGTCTGTCCTTTTC 58.761 55.000 0.00 0.00 36.25 2.29
2496 2579 1.476833 GCACTGGGTCTGTCCTTTTCA 60.477 52.381 0.00 0.00 36.25 2.69
2497 2580 2.815589 GCACTGGGTCTGTCCTTTTCAT 60.816 50.000 0.00 0.00 36.25 2.57
2498 2581 2.816087 CACTGGGTCTGTCCTTTTCATG 59.184 50.000 0.00 0.00 36.25 3.07
2499 2582 2.224867 ACTGGGTCTGTCCTTTTCATGG 60.225 50.000 0.00 0.00 36.25 3.66
2500 2583 1.075374 TGGGTCTGTCCTTTTCATGGG 59.925 52.381 0.00 0.00 36.25 4.00
2501 2584 1.354368 GGGTCTGTCCTTTTCATGGGA 59.646 52.381 0.00 0.00 36.25 4.37
2502 2585 2.619074 GGGTCTGTCCTTTTCATGGGAG 60.619 54.545 0.00 0.00 36.25 4.30
2503 2586 2.040412 GGTCTGTCCTTTTCATGGGAGT 59.960 50.000 0.00 0.00 31.66 3.85
2504 2587 3.339141 GTCTGTCCTTTTCATGGGAGTC 58.661 50.000 0.00 0.00 31.66 3.36
2505 2588 2.978978 TCTGTCCTTTTCATGGGAGTCA 59.021 45.455 0.00 0.00 31.66 3.41
2506 2589 3.394274 TCTGTCCTTTTCATGGGAGTCAA 59.606 43.478 0.00 0.00 31.66 3.18
2507 2590 3.754965 TGTCCTTTTCATGGGAGTCAAG 58.245 45.455 0.00 0.00 31.66 3.02
2508 2591 3.394274 TGTCCTTTTCATGGGAGTCAAGA 59.606 43.478 0.00 0.00 31.66 3.02
2514 2597 4.503714 TTCATGGGAGTCAAGAATACCC 57.496 45.455 0.00 0.00 40.79 3.69
2520 2603 2.170817 GGAGTCAAGAATACCCCCTCAC 59.829 54.545 0.00 0.00 0.00 3.51
2523 2606 3.852578 AGTCAAGAATACCCCCTCACAAT 59.147 43.478 0.00 0.00 0.00 2.71
2555 2638 6.012658 TCATTTTGTTACAAGTCATGCTCC 57.987 37.500 0.00 0.00 0.00 4.70
2636 2719 7.964545 AATTTTGTTTGAGAACTCGTGTAAC 57.035 32.000 0.00 0.00 36.70 2.50
2722 4129 5.497464 TGGAGTGATTAGACACCATTCAA 57.503 39.130 0.00 0.00 41.12 2.69
2739 4154 9.146984 CACCATTCAACTAAACGTATTAGAGAA 57.853 33.333 18.27 18.58 0.00 2.87
2805 4220 6.187727 CCCCCTGCACTTCTTATTCTAATA 57.812 41.667 0.00 0.00 0.00 0.98
2836 4251 5.871396 ATATCACTCATTACAGTTCGGGT 57.129 39.130 0.00 0.00 0.00 5.28
2841 4256 6.289834 TCACTCATTACAGTTCGGGTTTAAA 58.710 36.000 0.00 0.00 0.00 1.52
2866 4281 2.012673 GAATCGAGCCAACATGAAGCT 58.987 47.619 0.00 3.91 40.24 3.74
2921 4336 5.207110 TCCTCTGTTTATATCTGCTGCTC 57.793 43.478 0.00 0.00 0.00 4.26
2936 4351 2.430332 GCTGCTCTGATCTAGTTCCAGT 59.570 50.000 0.00 0.00 0.00 4.00
2967 4382 8.888332 TTGTAGTAAATCAAACACATATTGCG 57.112 30.769 0.00 0.00 0.00 4.85
2976 4391 4.864916 AACACATATTGCGTTAGCTCAG 57.135 40.909 0.00 0.00 45.42 3.35
2988 4403 4.495422 CGTTAGCTCAGTGGAATAAGTGT 58.505 43.478 0.00 0.00 0.00 3.55
2989 4404 4.563184 CGTTAGCTCAGTGGAATAAGTGTC 59.437 45.833 0.00 0.00 0.00 3.67
3018 4433 1.823295 CTTAGCAGAGCGGGGCTTA 59.177 57.895 4.44 0.00 39.88 3.09
3019 4434 0.394565 CTTAGCAGAGCGGGGCTTAT 59.605 55.000 4.44 0.00 39.88 1.73
3042 4457 4.134563 ACTTGTCTCGGTGCTATTTTTGT 58.865 39.130 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.472007 TGGTAATCCTATTTGAAACAACAAGT 57.528 30.769 0.00 0.00 34.23 3.16
6 7 9.357652 CATGGTAATCCTATTTGAAACAACAAG 57.642 33.333 0.00 0.00 34.23 3.16
7 8 9.083422 TCATGGTAATCCTATTTGAAACAACAA 57.917 29.630 0.00 0.00 34.23 2.83
8 9 8.642935 TCATGGTAATCCTATTTGAAACAACA 57.357 30.769 0.00 0.00 34.23 3.33
9 10 8.190784 CCTCATGGTAATCCTATTTGAAACAAC 58.809 37.037 0.00 0.00 34.23 3.32
37 38 5.012239 TGCATTCTTCATAGTTCAGGCTTT 58.988 37.500 0.00 0.00 0.00 3.51
76 77 6.909550 TTGTACATTTGCTCCTTTGGTTAT 57.090 33.333 0.00 0.00 0.00 1.89
103 104 3.248024 TCCAGAGGACATGTAACCAGTT 58.752 45.455 0.00 0.00 0.00 3.16
133 134 7.385778 TCAAATATTTTGTAACGGAGGAAGG 57.614 36.000 0.00 0.00 0.00 3.46
134 135 8.512138 ACTTCAAATATTTTGTAACGGAGGAAG 58.488 33.333 0.00 6.93 33.61 3.46
135 136 8.398878 ACTTCAAATATTTTGTAACGGAGGAA 57.601 30.769 0.00 0.00 0.00 3.36
136 137 7.989416 ACTTCAAATATTTTGTAACGGAGGA 57.011 32.000 0.00 0.00 0.00 3.71
137 138 8.512138 AGAACTTCAAATATTTTGTAACGGAGG 58.488 33.333 0.00 0.00 0.00 4.30
140 141 9.274065 GCTAGAACTTCAAATATTTTGTAACGG 57.726 33.333 0.00 0.00 0.00 4.44
147 148 9.914131 GGACAAAGCTAGAACTTCAAATATTTT 57.086 29.630 0.00 0.00 0.00 1.82
148 149 9.301897 AGGACAAAGCTAGAACTTCAAATATTT 57.698 29.630 0.00 0.00 0.00 1.40
149 150 8.870075 AGGACAAAGCTAGAACTTCAAATATT 57.130 30.769 0.00 0.00 0.00 1.28
150 151 9.606631 CTAGGACAAAGCTAGAACTTCAAATAT 57.393 33.333 0.00 0.00 0.00 1.28
151 152 8.041323 CCTAGGACAAAGCTAGAACTTCAAATA 58.959 37.037 1.05 0.00 0.00 1.40
152 153 6.881602 CCTAGGACAAAGCTAGAACTTCAAAT 59.118 38.462 1.05 0.00 0.00 2.32
153 154 6.183361 ACCTAGGACAAAGCTAGAACTTCAAA 60.183 38.462 17.98 0.00 0.00 2.69
154 155 5.307196 ACCTAGGACAAAGCTAGAACTTCAA 59.693 40.000 17.98 0.00 0.00 2.69
155 156 4.838986 ACCTAGGACAAAGCTAGAACTTCA 59.161 41.667 17.98 0.00 0.00 3.02
156 157 5.186215 AGACCTAGGACAAAGCTAGAACTTC 59.814 44.000 17.98 0.00 0.00 3.01
157 158 5.088026 AGACCTAGGACAAAGCTAGAACTT 58.912 41.667 17.98 0.00 0.00 2.66
158 159 4.679331 AGACCTAGGACAAAGCTAGAACT 58.321 43.478 17.98 0.00 0.00 3.01
159 160 6.527057 TTAGACCTAGGACAAAGCTAGAAC 57.473 41.667 17.98 0.00 0.00 3.01
160 161 7.735326 AATTAGACCTAGGACAAAGCTAGAA 57.265 36.000 17.98 0.00 0.00 2.10
161 162 7.735326 AAATTAGACCTAGGACAAAGCTAGA 57.265 36.000 17.98 0.17 0.00 2.43
162 163 8.261522 AGAAAATTAGACCTAGGACAAAGCTAG 58.738 37.037 17.98 0.00 0.00 3.42
163 164 8.041323 CAGAAAATTAGACCTAGGACAAAGCTA 58.959 37.037 17.98 4.21 0.00 3.32
164 165 6.881602 CAGAAAATTAGACCTAGGACAAAGCT 59.118 38.462 17.98 5.16 0.00 3.74
165 166 6.879458 TCAGAAAATTAGACCTAGGACAAAGC 59.121 38.462 17.98 0.00 0.00 3.51
166 167 8.848474 TTCAGAAAATTAGACCTAGGACAAAG 57.152 34.615 17.98 0.00 0.00 2.77
167 168 8.437575 ACTTCAGAAAATTAGACCTAGGACAAA 58.562 33.333 17.98 6.34 0.00 2.83
168 169 7.974504 ACTTCAGAAAATTAGACCTAGGACAA 58.025 34.615 17.98 6.35 0.00 3.18
169 170 7.554959 ACTTCAGAAAATTAGACCTAGGACA 57.445 36.000 17.98 0.00 0.00 4.02
170 171 8.722394 CAAACTTCAGAAAATTAGACCTAGGAC 58.278 37.037 17.98 9.98 0.00 3.85
171 172 8.656806 TCAAACTTCAGAAAATTAGACCTAGGA 58.343 33.333 17.98 0.00 0.00 2.94
172 173 8.722394 GTCAAACTTCAGAAAATTAGACCTAGG 58.278 37.037 7.41 7.41 0.00 3.02
173 174 8.722394 GGTCAAACTTCAGAAAATTAGACCTAG 58.278 37.037 0.00 0.00 38.90 3.02
174 175 8.215050 TGGTCAAACTTCAGAAAATTAGACCTA 58.785 33.333 16.35 6.40 41.66 3.08
175 176 7.060421 TGGTCAAACTTCAGAAAATTAGACCT 58.940 34.615 16.35 0.00 41.66 3.85
176 177 7.272037 TGGTCAAACTTCAGAAAATTAGACC 57.728 36.000 0.00 0.00 41.53 3.85
177 178 9.750125 ATTTGGTCAAACTTCAGAAAATTAGAC 57.250 29.630 0.00 0.00 32.51 2.59
206 207 9.227777 GTTGTGGACATTAGTAGGTTTTTCTAT 57.772 33.333 0.00 0.00 0.00 1.98
207 208 8.212312 TGTTGTGGACATTAGTAGGTTTTTCTA 58.788 33.333 0.00 0.00 32.00 2.10
208 209 7.057894 TGTTGTGGACATTAGTAGGTTTTTCT 58.942 34.615 0.00 0.00 32.00 2.52
209 210 7.266922 TGTTGTGGACATTAGTAGGTTTTTC 57.733 36.000 0.00 0.00 32.00 2.29
210 211 7.833285 ATGTTGTGGACATTAGTAGGTTTTT 57.167 32.000 0.00 0.00 46.80 1.94
264 265 9.132923 AGTTTCATTAGATTCAGCATTCATCAT 57.867 29.630 0.00 0.00 0.00 2.45
265 266 8.515695 AGTTTCATTAGATTCAGCATTCATCA 57.484 30.769 0.00 0.00 0.00 3.07
272 273 9.023962 ACCAAATTAGTTTCATTAGATTCAGCA 57.976 29.630 0.00 0.00 0.00 4.41
273 274 9.294030 CACCAAATTAGTTTCATTAGATTCAGC 57.706 33.333 0.00 0.00 0.00 4.26
282 283 9.912634 CATCTACAACACCAAATTAGTTTCATT 57.087 29.630 0.00 0.00 0.00 2.57
283 284 9.077885 ACATCTACAACACCAAATTAGTTTCAT 57.922 29.630 0.00 0.00 0.00 2.57
284 285 8.458573 ACATCTACAACACCAAATTAGTTTCA 57.541 30.769 0.00 0.00 0.00 2.69
285 286 9.180678 CAACATCTACAACACCAAATTAGTTTC 57.819 33.333 0.00 0.00 0.00 2.78
286 287 8.141268 CCAACATCTACAACACCAAATTAGTTT 58.859 33.333 0.00 0.00 0.00 2.66
287 288 7.286775 ACCAACATCTACAACACCAAATTAGTT 59.713 33.333 0.00 0.00 0.00 2.24
288 289 6.775629 ACCAACATCTACAACACCAAATTAGT 59.224 34.615 0.00 0.00 0.00 2.24
289 290 7.214467 ACCAACATCTACAACACCAAATTAG 57.786 36.000 0.00 0.00 0.00 1.73
290 291 8.871629 ATACCAACATCTACAACACCAAATTA 57.128 30.769 0.00 0.00 0.00 1.40
291 292 7.775053 ATACCAACATCTACAACACCAAATT 57.225 32.000 0.00 0.00 0.00 1.82
292 293 9.474313 AATATACCAACATCTACAACACCAAAT 57.526 29.630 0.00 0.00 0.00 2.32
293 294 8.871629 AATATACCAACATCTACAACACCAAA 57.128 30.769 0.00 0.00 0.00 3.28
294 295 8.871629 AAATATACCAACATCTACAACACCAA 57.128 30.769 0.00 0.00 0.00 3.67
295 296 8.871629 AAAATATACCAACATCTACAACACCA 57.128 30.769 0.00 0.00 0.00 4.17
318 319 5.141182 TGTTTGGCCAGGTATACAGAAAAA 58.859 37.500 5.11 0.00 0.00 1.94
319 320 4.730966 TGTTTGGCCAGGTATACAGAAAA 58.269 39.130 5.11 0.00 0.00 2.29
320 321 4.374689 TGTTTGGCCAGGTATACAGAAA 57.625 40.909 5.11 0.00 0.00 2.52
321 322 4.584638 ATGTTTGGCCAGGTATACAGAA 57.415 40.909 5.11 0.00 0.00 3.02
322 323 5.702065 TTATGTTTGGCCAGGTATACAGA 57.298 39.130 5.11 1.47 0.00 3.41
323 324 6.119536 TCTTTATGTTTGGCCAGGTATACAG 58.880 40.000 5.11 8.51 0.00 2.74
324 325 6.068461 TCTTTATGTTTGGCCAGGTATACA 57.932 37.500 5.11 7.33 0.00 2.29
325 326 6.602009 ACTTCTTTATGTTTGGCCAGGTATAC 59.398 38.462 5.11 1.28 0.00 1.47
326 327 6.727394 ACTTCTTTATGTTTGGCCAGGTATA 58.273 36.000 5.11 3.11 0.00 1.47
327 328 5.580022 ACTTCTTTATGTTTGGCCAGGTAT 58.420 37.500 5.11 4.17 0.00 2.73
328 329 4.993028 ACTTCTTTATGTTTGGCCAGGTA 58.007 39.130 5.11 0.00 0.00 3.08
329 330 3.844640 ACTTCTTTATGTTTGGCCAGGT 58.155 40.909 5.11 0.00 0.00 4.00
330 331 4.871933 AACTTCTTTATGTTTGGCCAGG 57.128 40.909 5.11 0.00 0.00 4.45
331 332 5.691754 GTCAAACTTCTTTATGTTTGGCCAG 59.308 40.000 5.11 0.00 46.67 4.85
332 333 5.596845 GTCAAACTTCTTTATGTTTGGCCA 58.403 37.500 0.00 0.00 46.67 5.36
337 338 9.403583 TGTCCTAAGTCAAACTTCTTTATGTTT 57.596 29.630 0.00 0.00 39.51 2.83
338 339 8.974060 TGTCCTAAGTCAAACTTCTTTATGTT 57.026 30.769 0.00 0.00 39.51 2.71
339 340 8.974060 TTGTCCTAAGTCAAACTTCTTTATGT 57.026 30.769 0.00 0.00 39.51 2.29
340 341 9.665264 GTTTGTCCTAAGTCAAACTTCTTTATG 57.335 33.333 11.75 0.00 43.96 1.90
341 342 8.847196 GGTTTGTCCTAAGTCAAACTTCTTTAT 58.153 33.333 16.44 0.00 45.51 1.40
342 343 8.050930 AGGTTTGTCCTAAGTCAAACTTCTTTA 58.949 33.333 16.44 0.00 45.51 1.85
343 344 6.890268 AGGTTTGTCCTAAGTCAAACTTCTTT 59.110 34.615 16.44 1.24 45.51 2.52
344 345 6.424032 AGGTTTGTCCTAAGTCAAACTTCTT 58.576 36.000 16.44 0.00 45.51 2.52
345 346 6.002653 AGGTTTGTCCTAAGTCAAACTTCT 57.997 37.500 16.44 7.04 45.51 2.85
346 347 7.215085 TCTAGGTTTGTCCTAAGTCAAACTTC 58.785 38.462 16.44 5.35 46.81 3.01
347 348 7.133133 TCTAGGTTTGTCCTAAGTCAAACTT 57.867 36.000 16.44 13.02 46.81 2.66
348 349 6.742559 TCTAGGTTTGTCCTAAGTCAAACT 57.257 37.500 16.44 8.40 46.81 2.66
349 350 6.990939 AGTTCTAGGTTTGTCCTAAGTCAAAC 59.009 38.462 10.90 10.90 46.81 2.93
350 351 7.133133 AGTTCTAGGTTTGTCCTAAGTCAAA 57.867 36.000 0.00 0.00 46.81 2.69
351 352 6.742559 AGTTCTAGGTTTGTCCTAAGTCAA 57.257 37.500 0.00 0.00 46.81 3.18
352 353 6.325545 TGAAGTTCTAGGTTTGTCCTAAGTCA 59.674 38.462 4.17 0.00 46.81 3.41
353 354 6.756221 TGAAGTTCTAGGTTTGTCCTAAGTC 58.244 40.000 4.17 0.00 46.81 3.01
354 355 6.742559 TGAAGTTCTAGGTTTGTCCTAAGT 57.257 37.500 4.17 0.00 46.81 2.24
355 356 8.622948 ATTTGAAGTTCTAGGTTTGTCCTAAG 57.377 34.615 4.17 0.00 46.81 2.18
361 362 9.981114 CCAAAATATTTGAAGTTCTAGGTTTGT 57.019 29.630 0.39 0.00 0.00 2.83
365 366 9.362151 TGTTCCAAAATATTTGAAGTTCTAGGT 57.638 29.630 0.39 0.00 0.00 3.08
366 367 9.846248 CTGTTCCAAAATATTTGAAGTTCTAGG 57.154 33.333 0.39 0.00 0.00 3.02
369 370 8.579863 CCTCTGTTCCAAAATATTTGAAGTTCT 58.420 33.333 0.39 0.00 0.00 3.01
370 371 7.814587 CCCTCTGTTCCAAAATATTTGAAGTTC 59.185 37.037 0.39 0.00 0.00 3.01
371 372 7.508977 TCCCTCTGTTCCAAAATATTTGAAGTT 59.491 33.333 0.39 0.00 0.00 2.66
372 373 7.010160 TCCCTCTGTTCCAAAATATTTGAAGT 58.990 34.615 0.39 0.00 0.00 3.01
373 374 7.177392 ACTCCCTCTGTTCCAAAATATTTGAAG 59.823 37.037 0.39 0.00 0.00 3.02
374 375 7.010160 ACTCCCTCTGTTCCAAAATATTTGAA 58.990 34.615 0.39 0.00 0.00 2.69
375 376 6.552008 ACTCCCTCTGTTCCAAAATATTTGA 58.448 36.000 0.39 0.00 0.00 2.69
376 377 6.840780 ACTCCCTCTGTTCCAAAATATTTG 57.159 37.500 0.39 0.00 0.00 2.32
377 378 7.611855 CAGTACTCCCTCTGTTCCAAAATATTT 59.388 37.037 0.00 0.00 0.00 1.40
378 379 7.037586 TCAGTACTCCCTCTGTTCCAAAATATT 60.038 37.037 0.00 0.00 33.89 1.28
379 380 6.443849 TCAGTACTCCCTCTGTTCCAAAATAT 59.556 38.462 0.00 0.00 33.89 1.28
380 381 5.783360 TCAGTACTCCCTCTGTTCCAAAATA 59.217 40.000 0.00 0.00 33.89 1.40
381 382 4.597507 TCAGTACTCCCTCTGTTCCAAAAT 59.402 41.667 0.00 0.00 33.89 1.82
382 383 3.971305 TCAGTACTCCCTCTGTTCCAAAA 59.029 43.478 0.00 0.00 33.89 2.44
383 384 3.583228 TCAGTACTCCCTCTGTTCCAAA 58.417 45.455 0.00 0.00 33.89 3.28
384 385 3.254093 TCAGTACTCCCTCTGTTCCAA 57.746 47.619 0.00 0.00 33.89 3.53
385 386 2.992847 TCAGTACTCCCTCTGTTCCA 57.007 50.000 0.00 0.00 33.89 3.53
386 387 3.166679 ACTTCAGTACTCCCTCTGTTCC 58.833 50.000 0.00 0.00 33.89 3.62
387 388 5.163499 CCATACTTCAGTACTCCCTCTGTTC 60.163 48.000 0.00 0.00 32.72 3.18
388 389 4.712337 CCATACTTCAGTACTCCCTCTGTT 59.288 45.833 0.00 0.00 32.72 3.16
389 390 4.017407 TCCATACTTCAGTACTCCCTCTGT 60.017 45.833 0.00 0.00 32.72 3.41
390 391 4.339814 GTCCATACTTCAGTACTCCCTCTG 59.660 50.000 0.00 0.00 32.72 3.35
391 392 4.230964 AGTCCATACTTCAGTACTCCCTCT 59.769 45.833 0.00 0.00 32.72 3.69
392 393 4.538738 AGTCCATACTTCAGTACTCCCTC 58.461 47.826 0.00 0.00 32.72 4.30
393 394 4.611564 AGTCCATACTTCAGTACTCCCT 57.388 45.455 0.00 0.00 32.72 4.20
472 473 2.346541 GGGCTCTTTCTTGGCCAGC 61.347 63.158 5.11 3.50 46.87 4.85
532 533 4.415881 AATTGTTTGGGGTTTTCCAGAC 57.584 40.909 0.00 0.00 40.92 3.51
561 562 7.224753 TGTGCACTCTGTTCTAGAAAAGTTTAG 59.775 37.037 20.00 13.56 34.32 1.85
562 563 7.045416 TGTGCACTCTGTTCTAGAAAAGTTTA 58.955 34.615 20.00 2.94 34.32 2.01
570 571 5.921962 ACATATGTGCACTCTGTTCTAGA 57.078 39.130 19.41 0.00 0.00 2.43
598 599 5.419471 GTGTCTGTACTTGGACTCCTTCTAT 59.581 44.000 12.63 0.00 34.01 1.98
614 615 5.929415 TCAATTATCTTTGCACGTGTCTGTA 59.071 36.000 18.38 0.79 0.00 2.74
616 617 5.082059 GTCAATTATCTTTGCACGTGTCTG 58.918 41.667 18.38 5.59 0.00 3.51
704 705 1.140052 TCTGCCGTTGGACTCTTTTCA 59.860 47.619 0.00 0.00 0.00 2.69
735 736 6.181908 GGTGGGTCCATGTTTGTTAACTATA 58.818 40.000 7.22 0.00 34.22 1.31
739 740 2.030628 CGGTGGGTCCATGTTTGTTAAC 60.031 50.000 0.00 0.00 35.57 2.01
740 741 2.231529 CGGTGGGTCCATGTTTGTTAA 58.768 47.619 0.00 0.00 35.57 2.01
743 744 0.821711 CACGGTGGGTCCATGTTTGT 60.822 55.000 0.00 0.00 35.57 2.83
747 748 1.281419 TATTCACGGTGGGTCCATGT 58.719 50.000 8.50 0.00 35.57 3.21
748 749 2.158827 TGATATTCACGGTGGGTCCATG 60.159 50.000 8.50 0.00 35.57 3.66
756 757 5.504010 GCACCAGTATTTGATATTCACGGTG 60.504 44.000 0.56 0.56 42.40 4.94
826 829 6.814644 TCACGGATAATTGTCTAAACGTCAAT 59.185 34.615 1.99 0.00 33.70 2.57
856 860 2.643272 GACTGACGAGTGTGCCGA 59.357 61.111 0.00 0.00 30.16 5.54
858 862 1.729838 GACGACTGACGAGTGTGCC 60.730 63.158 6.52 0.00 45.77 5.01
861 865 0.869068 CTCTGACGACTGACGAGTGT 59.131 55.000 6.52 0.00 45.77 3.55
943 951 6.531021 CCTCTGGACAAGTTTAACTAGGAAA 58.469 40.000 0.00 0.00 0.00 3.13
944 952 5.512576 GCCTCTGGACAAGTTTAACTAGGAA 60.513 44.000 10.88 0.00 0.00 3.36
945 953 4.020485 GCCTCTGGACAAGTTTAACTAGGA 60.020 45.833 10.88 0.00 0.00 2.94
1033 1041 1.556911 AGAGGTGAATCGGCTCACAAT 59.443 47.619 16.36 7.11 46.31 2.71
1049 1057 1.072965 ACTTGTTCAGCAGGGAAGAGG 59.927 52.381 0.00 0.00 0.00 3.69
1053 1061 1.771854 TGGTACTTGTTCAGCAGGGAA 59.228 47.619 0.00 0.00 0.00 3.97
1055 1063 2.496899 ATGGTACTTGTTCAGCAGGG 57.503 50.000 0.00 0.00 0.00 4.45
1097 1114 2.593956 AACCTCTCCACCGCCTTCC 61.594 63.158 0.00 0.00 0.00 3.46
1173 1190 2.401583 TCATCATCCCGAAGTTGGTG 57.598 50.000 0.00 0.00 0.00 4.17
1181 1198 0.034476 GAGCTGCATCATCATCCCGA 59.966 55.000 1.02 0.00 0.00 5.14
1209 1226 0.824109 CTCGGTACATGGCCTCTGAA 59.176 55.000 3.32 0.00 0.00 3.02
1262 1280 0.182061 GCCTGCATCATCCTGAAGGA 59.818 55.000 0.51 0.51 43.90 3.36
1304 1322 5.416326 AGATACAAGCCGCTACTAGATAAGG 59.584 44.000 0.00 0.00 0.00 2.69
1307 1325 5.335740 GCAAGATACAAGCCGCTACTAGATA 60.336 44.000 0.00 0.00 0.00 1.98
1329 1347 0.812014 TTGTTCGAGAACGCTTGGCA 60.812 50.000 10.86 0.00 43.94 4.92
1349 1379 2.502538 AGGTGCGTGGCCTTATAAGTTA 59.497 45.455 11.50 0.00 31.04 2.24
1354 1393 1.038681 TCGAGGTGCGTGGCCTTATA 61.039 55.000 3.32 0.00 41.80 0.98
1492 1540 0.110238 CGGCCGAACATGAAGTTGTG 60.110 55.000 24.07 0.00 41.51 3.33
1550 1599 2.358737 CAGGAGGGTCGTTGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
1604 1653 4.583871 AGTCTTCTTCCCAATTACTGCAG 58.416 43.478 13.48 13.48 0.00 4.41
1623 1672 2.859806 GCACACATGAGCAACCAAAGTC 60.860 50.000 0.00 0.00 0.00 3.01
1667 1716 6.716628 TCCATTCAAGTGCAAAATAGAGAAGT 59.283 34.615 0.00 0.00 0.00 3.01
1709 1761 1.073763 TGGTCCTTCCATGGTCAAGTG 59.926 52.381 12.58 3.84 41.93 3.16
1795 1850 7.014038 GCCCATTCTTATGAGAAATGAGTGAAT 59.986 37.037 3.79 0.00 44.61 2.57
1848 1903 4.514401 ACCGGGCTAATCTTTTAAGTCTG 58.486 43.478 6.32 0.00 0.00 3.51
1898 1953 8.543774 ACCTCAACTCATTGTAAGACAGAATAT 58.456 33.333 0.00 0.00 37.11 1.28
1900 1955 6.773638 ACCTCAACTCATTGTAAGACAGAAT 58.226 36.000 0.00 0.00 37.11 2.40
1912 1967 7.556275 TGTCTTGAAAAAGTACCTCAACTCATT 59.444 33.333 0.00 0.00 0.00 2.57
1927 1982 4.517453 CCCGAATACCAGTGTCTTGAAAAA 59.483 41.667 0.00 0.00 0.00 1.94
1943 1998 1.640917 GGGGTCTATGCTCCCGAATA 58.359 55.000 0.00 0.00 44.27 1.75
1993 2048 3.390639 TGGAACACCTTGGCAAATTCATT 59.609 39.130 0.00 0.00 0.00 2.57
2013 2070 3.483248 CGCAAACACATTTGTTGTTGTGG 60.483 43.478 0.00 0.00 45.69 4.17
2068 2145 2.183478 TGTCCAGTATGCAACACCAG 57.817 50.000 0.00 0.00 31.97 4.00
2129 2206 0.485099 ATAAGTGTGGTTGGGGGCAA 59.515 50.000 0.00 0.00 0.00 4.52
2133 2213 2.238646 TGCTCTATAAGTGTGGTTGGGG 59.761 50.000 0.00 0.00 0.00 4.96
2142 2222 2.565841 GGTGGCCTTGCTCTATAAGTG 58.434 52.381 3.32 0.00 0.00 3.16
2161 2244 0.107848 GGTCTGTTATGTCCACCGGG 60.108 60.000 6.32 0.00 0.00 5.73
2164 2247 2.084546 GCAAGGTCTGTTATGTCCACC 58.915 52.381 0.00 0.00 0.00 4.61
2192 2275 3.106242 ACAACGTGTCATGCTAAGTGA 57.894 42.857 0.00 0.00 0.00 3.41
2229 2312 2.224867 ACACTTGGTGATTCCTCCTTGG 60.225 50.000 4.62 0.00 36.96 3.61
2306 2389 2.746362 CTCTTGACTCCCATGAAGTTGC 59.254 50.000 0.00 0.00 0.00 4.17
2307 2390 4.252073 CTCTCTTGACTCCCATGAAGTTG 58.748 47.826 0.00 0.00 0.00 3.16
2320 2403 2.270527 GGCCTGCCCTCTCTTGAC 59.729 66.667 0.00 0.00 0.00 3.18
2332 2415 3.706373 ACCACTACGCCAGGCCTG 61.706 66.667 26.87 26.87 0.00 4.85
2333 2416 3.706373 CACCACTACGCCAGGCCT 61.706 66.667 5.63 0.00 0.00 5.19
2334 2417 3.248446 TTCACCACTACGCCAGGCC 62.248 63.158 5.63 0.00 0.00 5.19
2335 2418 1.741770 CTTCACCACTACGCCAGGC 60.742 63.158 0.00 0.00 0.00 4.85
2336 2419 0.389948 GACTTCACCACTACGCCAGG 60.390 60.000 0.00 0.00 0.00 4.45
2337 2420 0.389948 GGACTTCACCACTACGCCAG 60.390 60.000 0.00 0.00 0.00 4.85
2338 2421 0.830444 AGGACTTCACCACTACGCCA 60.830 55.000 0.00 0.00 0.00 5.69
2339 2422 0.108756 GAGGACTTCACCACTACGCC 60.109 60.000 0.00 0.00 0.00 5.68
2340 2423 0.108756 GGAGGACTTCACCACTACGC 60.109 60.000 0.00 0.00 0.00 4.42
2341 2424 0.531200 GGGAGGACTTCACCACTACG 59.469 60.000 0.00 0.00 0.00 3.51
2348 2431 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
2349 2432 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
2350 2433 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
2351 2434 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
2352 2435 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
2353 2436 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
2354 2437 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
2365 2448 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
2366 2449 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
2367 2450 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
2368 2451 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2369 2452 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2370 2453 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2371 2454 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2372 2455 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2373 2456 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2374 2457 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2383 2466 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
2384 2467 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2385 2468 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
2386 2469 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
2387 2470 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2388 2471 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
2389 2472 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
2390 2473 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
2392 2475 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
2393 2476 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
2394 2477 1.884579 ACAAAGTGCAATGCAGAGAGG 59.115 47.619 8.73 0.00 40.08 3.69
2395 2478 3.126514 CCTACAAAGTGCAATGCAGAGAG 59.873 47.826 8.73 1.90 40.08 3.20
2396 2479 3.076621 CCTACAAAGTGCAATGCAGAGA 58.923 45.455 8.73 0.00 40.08 3.10
2397 2480 2.163010 CCCTACAAAGTGCAATGCAGAG 59.837 50.000 8.73 1.11 40.08 3.35
2398 2481 2.161855 CCCTACAAAGTGCAATGCAGA 58.838 47.619 8.73 0.00 40.08 4.26
2399 2482 1.203052 CCCCTACAAAGTGCAATGCAG 59.797 52.381 8.73 0.00 40.08 4.41
2400 2483 1.255882 CCCCTACAAAGTGCAATGCA 58.744 50.000 2.72 2.72 35.60 3.96
2401 2484 1.256812 ACCCCTACAAAGTGCAATGC 58.743 50.000 0.00 0.00 0.00 3.56
2402 2485 4.156008 GTCTTACCCCTACAAAGTGCAATG 59.844 45.833 0.00 0.00 0.00 2.82
2403 2486 4.042934 AGTCTTACCCCTACAAAGTGCAAT 59.957 41.667 0.00 0.00 0.00 3.56
2404 2487 3.393278 AGTCTTACCCCTACAAAGTGCAA 59.607 43.478 0.00 0.00 0.00 4.08
2405 2488 2.976882 AGTCTTACCCCTACAAAGTGCA 59.023 45.455 0.00 0.00 0.00 4.57
2406 2489 3.697619 AGTCTTACCCCTACAAAGTGC 57.302 47.619 0.00 0.00 0.00 4.40
2407 2490 6.295719 ACATAGTCTTACCCCTACAAAGTG 57.704 41.667 0.00 0.00 0.00 3.16
2408 2491 6.729569 AGAACATAGTCTTACCCCTACAAAGT 59.270 38.462 0.00 0.00 0.00 2.66
2409 2492 7.184067 AGAACATAGTCTTACCCCTACAAAG 57.816 40.000 0.00 0.00 0.00 2.77
2410 2493 7.563724 AAGAACATAGTCTTACCCCTACAAA 57.436 36.000 0.00 0.00 36.06 2.83
2411 2494 8.849543 ATAAGAACATAGTCTTACCCCTACAA 57.150 34.615 0.00 0.00 41.67 2.41
2412 2495 9.940974 TTATAAGAACATAGTCTTACCCCTACA 57.059 33.333 0.00 0.00 41.67 2.74
2415 2498 9.102453 GGATTATAAGAACATAGTCTTACCCCT 57.898 37.037 0.00 0.00 41.67 4.79
2416 2499 8.033626 CGGATTATAAGAACATAGTCTTACCCC 58.966 40.741 0.00 0.00 41.67 4.95
2417 2500 8.583296 ACGGATTATAAGAACATAGTCTTACCC 58.417 37.037 0.00 0.00 41.67 3.69
2418 2501 9.623350 GACGGATTATAAGAACATAGTCTTACC 57.377 37.037 0.00 0.00 41.67 2.85
2419 2502 9.623350 GGACGGATTATAAGAACATAGTCTTAC 57.377 37.037 0.00 0.00 41.67 2.34
2420 2503 8.800332 GGGACGGATTATAAGAACATAGTCTTA 58.200 37.037 0.00 0.00 42.73 2.10
2421 2504 7.256225 GGGGACGGATTATAAGAACATAGTCTT 60.256 40.741 0.00 0.00 40.89 3.01
2422 2505 6.210984 GGGGACGGATTATAAGAACATAGTCT 59.789 42.308 0.00 0.00 0.00 3.24
2423 2506 6.014840 TGGGGACGGATTATAAGAACATAGTC 60.015 42.308 0.00 0.00 0.00 2.59
2424 2507 5.842328 TGGGGACGGATTATAAGAACATAGT 59.158 40.000 0.00 0.00 0.00 2.12
2425 2508 6.210784 TCTGGGGACGGATTATAAGAACATAG 59.789 42.308 0.00 0.00 42.04 2.23
2426 2509 6.079336 TCTGGGGACGGATTATAAGAACATA 58.921 40.000 0.00 0.00 42.04 2.29
2427 2510 4.905456 TCTGGGGACGGATTATAAGAACAT 59.095 41.667 0.00 0.00 42.04 2.71
2428 2511 4.291792 TCTGGGGACGGATTATAAGAACA 58.708 43.478 0.00 0.00 42.04 3.18
2429 2512 4.950205 TCTGGGGACGGATTATAAGAAC 57.050 45.455 0.00 0.00 42.04 3.01
2442 2525 2.531942 AAGGTGGGGTCTGGGGAC 60.532 66.667 0.00 0.00 41.43 4.46
2443 2526 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
2444 2527 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
2445 2528 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
2446 2529 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
2447 2530 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
2455 2538 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2456 2539 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2457 2540 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2458 2541 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2459 2542 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2460 2543 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2461 2544 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2462 2545 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2463 2546 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2464 2547 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
2465 2548 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
2466 2549 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
2467 2550 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
2468 2551 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
2469 2552 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
2470 2553 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
2471 2554 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
2472 2555 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
2473 2556 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
2474 2557 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
2475 2558 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
2476 2559 1.239347 GAAAAGGACAGACCCAGTGC 58.761 55.000 0.00 0.00 40.05 4.40
2477 2560 2.638480 TGAAAAGGACAGACCCAGTG 57.362 50.000 0.00 0.00 40.05 3.66
2478 2561 2.224867 CCATGAAAAGGACAGACCCAGT 60.225 50.000 0.00 0.00 40.05 4.00
2479 2562 2.440409 CCATGAAAAGGACAGACCCAG 58.560 52.381 0.00 0.00 40.05 4.45
2480 2563 1.075374 CCCATGAAAAGGACAGACCCA 59.925 52.381 0.00 0.00 40.05 4.51
2481 2564 1.354368 TCCCATGAAAAGGACAGACCC 59.646 52.381 0.00 0.00 40.05 4.46
2482 2565 2.040412 ACTCCCATGAAAAGGACAGACC 59.960 50.000 0.00 0.00 39.35 3.85
2483 2566 3.244561 TGACTCCCATGAAAAGGACAGAC 60.245 47.826 0.00 0.00 0.00 3.51
2484 2567 2.978978 TGACTCCCATGAAAAGGACAGA 59.021 45.455 0.00 0.00 0.00 3.41
2485 2568 3.423539 TGACTCCCATGAAAAGGACAG 57.576 47.619 0.00 0.00 0.00 3.51
2486 2569 3.394274 TCTTGACTCCCATGAAAAGGACA 59.606 43.478 0.00 0.00 0.00 4.02
2487 2570 4.021102 TCTTGACTCCCATGAAAAGGAC 57.979 45.455 0.00 0.00 0.00 3.85
2488 2571 4.722526 TTCTTGACTCCCATGAAAAGGA 57.277 40.909 0.00 0.00 36.41 3.36
2489 2572 5.358160 GGTATTCTTGACTCCCATGAAAAGG 59.642 44.000 0.00 0.00 40.73 3.11
2490 2573 5.358160 GGGTATTCTTGACTCCCATGAAAAG 59.642 44.000 0.00 0.00 40.73 2.27
2491 2574 5.261216 GGGTATTCTTGACTCCCATGAAAA 58.739 41.667 0.00 0.00 40.73 2.29
2492 2575 4.325030 GGGGTATTCTTGACTCCCATGAAA 60.325 45.833 0.00 0.00 40.73 2.69
2493 2576 3.202151 GGGGTATTCTTGACTCCCATGAA 59.798 47.826 0.00 0.00 41.32 2.57
2494 2577 2.777692 GGGGTATTCTTGACTCCCATGA 59.222 50.000 0.00 0.00 39.85 3.07
2495 2578 3.214696 GGGGTATTCTTGACTCCCATG 57.785 52.381 0.00 0.00 39.85 3.66
2499 2582 2.170817 GTGAGGGGGTATTCTTGACTCC 59.829 54.545 0.00 0.00 36.64 3.85
2500 2583 2.838202 TGTGAGGGGGTATTCTTGACTC 59.162 50.000 0.00 0.00 0.00 3.36
2501 2584 2.915869 TGTGAGGGGGTATTCTTGACT 58.084 47.619 0.00 0.00 0.00 3.41
2502 2585 3.713826 TTGTGAGGGGGTATTCTTGAC 57.286 47.619 0.00 0.00 0.00 3.18
2503 2586 4.290985 TGAATTGTGAGGGGGTATTCTTGA 59.709 41.667 0.00 0.00 0.00 3.02
2504 2587 4.599041 TGAATTGTGAGGGGGTATTCTTG 58.401 43.478 0.00 0.00 0.00 3.02
2505 2588 4.946160 TGAATTGTGAGGGGGTATTCTT 57.054 40.909 0.00 0.00 0.00 2.52
2506 2589 5.472301 AATGAATTGTGAGGGGGTATTCT 57.528 39.130 0.00 0.00 0.00 2.40
2507 2590 6.381133 AGAAAATGAATTGTGAGGGGGTATTC 59.619 38.462 0.00 0.00 0.00 1.75
2508 2591 6.263754 AGAAAATGAATTGTGAGGGGGTATT 58.736 36.000 0.00 0.00 0.00 1.89
2514 2597 7.658575 ACAAAATGAGAAAATGAATTGTGAGGG 59.341 33.333 0.00 0.00 0.00 4.30
2549 2632 0.908910 TTCATGTGTACCCGGAGCAT 59.091 50.000 0.73 0.00 0.00 3.79
2555 2638 2.671396 GCACTAACTTCATGTGTACCCG 59.329 50.000 0.00 0.00 34.52 5.28
2662 2746 6.158598 GTCCATGCAAACACATCTGTTTATT 58.841 36.000 0.00 0.00 46.88 1.40
2664 2748 4.582240 TGTCCATGCAAACACATCTGTTTA 59.418 37.500 0.00 0.00 46.88 2.01
2711 4118 8.470040 TCTAATACGTTTAGTTGAATGGTGTC 57.530 34.615 0.00 0.00 0.00 3.67
2766 4181 0.466922 GGGGGTTGCTGGATCTGATG 60.467 60.000 0.00 0.00 0.00 3.07
2805 4220 8.650143 ACTGTAATGAGTGATATTTGGGTTTT 57.350 30.769 0.00 0.00 0.00 2.43
2821 4236 6.072397 CCATGTTTAAACCCGAACTGTAATGA 60.072 38.462 15.59 0.00 0.00 2.57
2828 4243 4.155280 CGATTCCATGTTTAAACCCGAACT 59.845 41.667 15.59 5.32 0.00 3.01
2836 4251 4.520874 TGTTGGCTCGATTCCATGTTTAAA 59.479 37.500 7.29 0.00 32.92 1.52
2841 4256 2.019249 CATGTTGGCTCGATTCCATGT 58.981 47.619 7.29 0.00 32.92 3.21
2866 4281 1.117749 ACACTCAGAGCACAGGAGCA 61.118 55.000 0.00 0.00 36.85 4.26
2921 4336 9.307121 CTACAATACAAACTGGAACTAGATCAG 57.693 37.037 0.00 3.56 34.91 2.90
2960 4375 3.819564 TCCACTGAGCTAACGCAATAT 57.180 42.857 0.00 0.00 39.10 1.28
2967 4382 5.725362 AGACACTTATTCCACTGAGCTAAC 58.275 41.667 0.00 0.00 0.00 2.34
2976 4391 5.755861 GCTGGATTAGAGACACTTATTCCAC 59.244 44.000 0.00 0.00 31.37 4.02
2988 4403 3.320541 GCTCTGCTAAGCTGGATTAGAGA 59.679 47.826 15.37 8.08 39.27 3.10
2989 4404 3.652274 GCTCTGCTAAGCTGGATTAGAG 58.348 50.000 9.42 9.61 39.27 2.43
3018 4433 5.938125 ACAAAAATAGCACCGAGACAAGTAT 59.062 36.000 0.00 0.00 0.00 2.12
3019 4434 5.302360 ACAAAAATAGCACCGAGACAAGTA 58.698 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.