Multiple sequence alignment - TraesCS5B01G300700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G300700 chr5B 100.000 2893 0 0 1 2893 485818097 485815205 0 5343
1 TraesCS5B01G300700 chr7D 97.078 2498 45 4 1 2475 184519261 184516769 0 4183
2 TraesCS5B01G300700 chr4D 96.759 2499 53 4 2 2477 85731751 85734244 0 4141
3 TraesCS5B01G300700 chr6D 96.521 2501 43 5 1 2478 460763890 460766369 0 4096
4 TraesCS5B01G300700 chr6D 91.424 1131 89 5 34 1162 19721043 19722167 0 1544
5 TraesCS5B01G300700 chr3D 94.243 2484 129 10 1 2478 363068261 363070736 0 3783
6 TraesCS5B01G300700 chr3D 98.060 2062 32 4 1 2060 375237267 375235212 0 3579
7 TraesCS5B01G300700 chr3D 97.150 421 12 0 2058 2478 375225619 375225199 0 712
8 TraesCS5B01G300700 chr7B 93.339 2477 148 12 1 2474 552549941 552552403 0 3644
9 TraesCS5B01G300700 chr7B 93.544 1456 89 4 1028 2481 173303677 173302225 0 2163
10 TraesCS5B01G300700 chr1A 92.902 2071 135 11 295 2359 98291582 98289518 0 3000
11 TraesCS5B01G300700 chr3A 97.072 1776 43 5 716 2483 701761531 701759757 0 2983
12 TraesCS5B01G300700 chr7A 94.276 1450 76 3 1 1449 383417565 383419008 0 2211
13 TraesCS5B01G300700 chr7A 90.421 1044 91 6 1439 2478 383420476 383421514 0 1365


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G300700 chr5B 485815205 485818097 2892 True 5343 5343 100.0000 1 2893 1 chr5B.!!$R1 2892
1 TraesCS5B01G300700 chr7D 184516769 184519261 2492 True 4183 4183 97.0780 1 2475 1 chr7D.!!$R1 2474
2 TraesCS5B01G300700 chr4D 85731751 85734244 2493 False 4141 4141 96.7590 2 2477 1 chr4D.!!$F1 2475
3 TraesCS5B01G300700 chr6D 460763890 460766369 2479 False 4096 4096 96.5210 1 2478 1 chr6D.!!$F2 2477
4 TraesCS5B01G300700 chr6D 19721043 19722167 1124 False 1544 1544 91.4240 34 1162 1 chr6D.!!$F1 1128
5 TraesCS5B01G300700 chr3D 363068261 363070736 2475 False 3783 3783 94.2430 1 2478 1 chr3D.!!$F1 2477
6 TraesCS5B01G300700 chr3D 375235212 375237267 2055 True 3579 3579 98.0600 1 2060 1 chr3D.!!$R2 2059
7 TraesCS5B01G300700 chr7B 552549941 552552403 2462 False 3644 3644 93.3390 1 2474 1 chr7B.!!$F1 2473
8 TraesCS5B01G300700 chr7B 173302225 173303677 1452 True 2163 2163 93.5440 1028 2481 1 chr7B.!!$R1 1453
9 TraesCS5B01G300700 chr1A 98289518 98291582 2064 True 3000 3000 92.9020 295 2359 1 chr1A.!!$R1 2064
10 TraesCS5B01G300700 chr3A 701759757 701761531 1774 True 2983 2983 97.0720 716 2483 1 chr3A.!!$R1 1767
11 TraesCS5B01G300700 chr7A 383417565 383421514 3949 False 1788 2211 92.3485 1 2478 2 chr7A.!!$F1 2477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 156 2.896685 CCCTACCCAAAATGTTCTTGCA 59.103 45.455 0.0 0.0 0.00 4.08 F
1006 1022 2.828868 GCCACAGGGATATGGCGA 59.171 61.111 0.0 0.0 37.71 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1146 1162 1.380403 TTTGTGTGAAGGCGGTGGTG 61.38 55.0 0.0 0.0 0.0 4.17 R
2873 4418 0.110486 AACGTGCATTCTTCCCCACT 59.89 50.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 8.665685 GTTACTTGGATGTTTAGGACTGTATTG 58.334 37.037 0.00 0.00 0.00 1.90
51 53 6.180472 ACTTGGATGTTTAGGACTGTATTGG 58.820 40.000 0.00 0.00 0.00 3.16
52 54 5.772393 TGGATGTTTAGGACTGTATTGGT 57.228 39.130 0.00 0.00 0.00 3.67
53 55 6.877668 TGGATGTTTAGGACTGTATTGGTA 57.122 37.500 0.00 0.00 0.00 3.25
54 56 6.646267 TGGATGTTTAGGACTGTATTGGTAC 58.354 40.000 0.00 0.00 0.00 3.34
110 113 3.141767 TCCATCTCGGATAGTCGACAT 57.858 47.619 19.50 9.22 39.64 3.06
153 156 2.896685 CCCTACCCAAAATGTTCTTGCA 59.103 45.455 0.00 0.00 0.00 4.08
433 438 3.242706 CGCCAAACTCGATATCATTTGCA 60.243 43.478 14.39 0.00 31.95 4.08
640 647 6.897259 TCACAACTGGATATTACTAAACGC 57.103 37.500 0.00 0.00 0.00 4.84
664 671 4.710375 GGGTCCTGATGAACTAGTCTACAA 59.290 45.833 0.00 0.00 0.00 2.41
949 965 4.823790 TGCAATGTGATATGCATCTCAC 57.176 40.909 28.96 28.96 46.87 3.51
1006 1022 2.828868 GCCACAGGGATATGGCGA 59.171 61.111 0.00 0.00 37.71 5.54
1146 1162 6.256686 TGCAAAACAAATCAATGCAAAGTTC 58.743 32.000 0.00 0.00 43.39 3.01
1166 1182 0.681564 ACCACCGCCTTCACACAAAA 60.682 50.000 0.00 0.00 0.00 2.44
1237 1253 5.086104 ACTAGAGGCGAAGAATTTAAGCA 57.914 39.130 0.00 0.00 0.00 3.91
1595 3089 4.756642 GCGATTGATATTGAGGTTGATCCA 59.243 41.667 0.00 0.00 39.02 3.41
1762 3256 4.674362 GCGTGATATGTCGGATACTATGCA 60.674 45.833 0.00 0.00 0.00 3.96
1763 3257 4.793731 CGTGATATGTCGGATACTATGCAC 59.206 45.833 0.00 0.00 0.00 4.57
2277 3822 7.967890 TTCAATGATATTGTAGCGATGATGT 57.032 32.000 1.92 0.00 0.00 3.06
2377 3922 1.526575 GCTGTTGCTAGCAAGGGCAA 61.527 55.000 32.10 17.53 44.64 4.52
2492 4037 4.932268 CGCTCCCGTAAACATCTAAAAA 57.068 40.909 0.00 0.00 0.00 1.94
2515 4060 9.777297 AAAAATTGCTATGAAACACCTAACATT 57.223 25.926 0.00 0.00 0.00 2.71
2516 4061 9.777297 AAAATTGCTATGAAACACCTAACATTT 57.223 25.926 0.00 0.00 0.00 2.32
2519 4064 8.630054 TTGCTATGAAACACCTAACATTTAGT 57.370 30.769 0.00 0.00 0.00 2.24
2520 4065 8.630054 TGCTATGAAACACCTAACATTTAGTT 57.370 30.769 0.00 0.00 44.27 2.24
2521 4066 9.073475 TGCTATGAAACACCTAACATTTAGTTT 57.927 29.630 0.00 0.00 41.64 2.66
2522 4067 9.908152 GCTATGAAACACCTAACATTTAGTTTT 57.092 29.630 0.00 0.00 41.64 2.43
2586 4131 6.867662 ATCTTTGATTACCCTAATGAAGCG 57.132 37.500 0.00 0.00 0.00 4.68
2587 4132 5.123227 TCTTTGATTACCCTAATGAAGCGG 58.877 41.667 0.00 0.00 0.00 5.52
2588 4133 3.485463 TGATTACCCTAATGAAGCGGG 57.515 47.619 0.00 0.00 43.79 6.13
2591 4136 3.827634 CCCTAATGAAGCGGGTGC 58.172 61.111 0.00 0.00 43.24 5.01
2592 4137 1.823899 CCCTAATGAAGCGGGTGCC 60.824 63.158 0.00 0.00 44.31 5.01
2593 4138 1.077787 CCTAATGAAGCGGGTGCCA 60.078 57.895 0.00 0.00 44.31 4.92
2594 4139 0.466189 CCTAATGAAGCGGGTGCCAT 60.466 55.000 0.00 0.00 44.31 4.40
2595 4140 0.664761 CTAATGAAGCGGGTGCCATG 59.335 55.000 0.00 0.00 44.31 3.66
2596 4141 1.383456 TAATGAAGCGGGTGCCATGC 61.383 55.000 0.00 0.00 44.31 4.06
2597 4142 3.942377 ATGAAGCGGGTGCCATGCA 62.942 57.895 0.00 0.00 44.31 3.96
2598 4143 3.818787 GAAGCGGGTGCCATGCAG 61.819 66.667 0.00 0.00 44.31 4.41
2599 4144 4.349503 AAGCGGGTGCCATGCAGA 62.350 61.111 0.00 0.00 44.31 4.26
2600 4145 3.866379 AAGCGGGTGCCATGCAGAA 62.866 57.895 0.00 0.00 44.31 3.02
2601 4146 3.372730 GCGGGTGCCATGCAGAAA 61.373 61.111 0.00 0.00 40.08 2.52
2602 4147 2.929903 GCGGGTGCCATGCAGAAAA 61.930 57.895 0.00 0.00 40.08 2.29
2603 4148 1.664873 CGGGTGCCATGCAGAAAAA 59.335 52.632 0.00 0.00 40.08 1.94
2604 4149 0.247185 CGGGTGCCATGCAGAAAAAT 59.753 50.000 0.00 0.00 40.08 1.82
2605 4150 1.736696 CGGGTGCCATGCAGAAAAATC 60.737 52.381 0.00 0.00 40.08 2.17
2606 4151 1.275856 GGGTGCCATGCAGAAAAATCA 59.724 47.619 0.00 0.00 40.08 2.57
2607 4152 2.289569 GGGTGCCATGCAGAAAAATCAA 60.290 45.455 0.00 0.00 40.08 2.57
2608 4153 3.602483 GGTGCCATGCAGAAAAATCAAT 58.398 40.909 0.00 0.00 40.08 2.57
2609 4154 4.004982 GGTGCCATGCAGAAAAATCAATT 58.995 39.130 0.00 0.00 40.08 2.32
2610 4155 4.456566 GGTGCCATGCAGAAAAATCAATTT 59.543 37.500 0.00 0.00 40.08 1.82
2611 4156 5.391203 GGTGCCATGCAGAAAAATCAATTTC 60.391 40.000 0.00 0.00 40.08 2.17
2613 4158 5.998981 TGCCATGCAGAAAAATCAATTTCTT 59.001 32.000 0.00 0.00 45.05 2.52
2614 4159 6.487331 TGCCATGCAGAAAAATCAATTTCTTT 59.513 30.769 0.00 0.00 45.05 2.52
2615 4160 7.013464 TGCCATGCAGAAAAATCAATTTCTTTT 59.987 29.630 0.00 0.00 45.05 2.27
2616 4161 8.505625 GCCATGCAGAAAAATCAATTTCTTTTA 58.494 29.630 0.00 0.00 45.05 1.52
2628 4173 7.328277 TCAATTTCTTTTATATGGTGGTCCG 57.672 36.000 0.00 0.00 36.30 4.79
2629 4174 5.767816 ATTTCTTTTATATGGTGGTCCGC 57.232 39.130 0.00 0.00 36.30 5.54
2630 4175 4.497291 TTCTTTTATATGGTGGTCCGCT 57.503 40.909 1.66 0.00 36.30 5.52
2631 4176 5.617528 TTCTTTTATATGGTGGTCCGCTA 57.382 39.130 1.66 0.00 36.30 4.26
2632 4177 5.818678 TCTTTTATATGGTGGTCCGCTAT 57.181 39.130 6.52 6.52 36.30 2.97
2633 4178 6.182507 TCTTTTATATGGTGGTCCGCTATT 57.817 37.500 6.60 0.00 36.30 1.73
2634 4179 7.305813 TCTTTTATATGGTGGTCCGCTATTA 57.694 36.000 6.60 0.00 36.30 0.98
2635 4180 7.383687 TCTTTTATATGGTGGTCCGCTATTAG 58.616 38.462 6.60 0.00 36.30 1.73
2636 4181 3.611766 ATATGGTGGTCCGCTATTAGC 57.388 47.619 6.60 5.56 38.02 3.09
2637 4182 1.424638 ATGGTGGTCCGCTATTAGCT 58.575 50.000 13.55 0.00 39.60 3.32
2638 4183 2.076207 TGGTGGTCCGCTATTAGCTA 57.924 50.000 13.55 0.00 39.60 3.32
2639 4184 1.684983 TGGTGGTCCGCTATTAGCTAC 59.315 52.381 13.55 10.82 39.60 3.58
2640 4185 1.000618 GGTGGTCCGCTATTAGCTACC 59.999 57.143 21.45 21.45 42.09 3.18
2641 4186 1.962100 GTGGTCCGCTATTAGCTACCT 59.038 52.381 25.31 0.00 42.18 3.08
2642 4187 2.030096 GTGGTCCGCTATTAGCTACCTC 60.030 54.545 25.31 21.00 42.18 3.85
2643 4188 2.158505 TGGTCCGCTATTAGCTACCTCT 60.159 50.000 25.31 0.00 42.18 3.69
2644 4189 2.892215 GGTCCGCTATTAGCTACCTCTT 59.108 50.000 21.16 0.00 40.01 2.85
2645 4190 3.305471 GGTCCGCTATTAGCTACCTCTTG 60.305 52.174 21.16 3.82 40.01 3.02
2646 4191 3.318557 GTCCGCTATTAGCTACCTCTTGT 59.681 47.826 13.55 0.00 39.60 3.16
2647 4192 3.318275 TCCGCTATTAGCTACCTCTTGTG 59.682 47.826 13.55 0.00 39.60 3.33
2648 4193 3.068307 CCGCTATTAGCTACCTCTTGTGT 59.932 47.826 13.55 0.00 39.60 3.72
2649 4194 4.277672 CCGCTATTAGCTACCTCTTGTGTA 59.722 45.833 13.55 0.00 39.60 2.90
2650 4195 5.453648 CGCTATTAGCTACCTCTTGTGTAG 58.546 45.833 13.55 0.00 39.60 2.74
2666 4211 3.500448 TGTAGCACACAATCCCAAAGA 57.500 42.857 0.00 0.00 32.95 2.52
2667 4212 4.032960 TGTAGCACACAATCCCAAAGAT 57.967 40.909 0.00 0.00 36.48 2.40
2668 4213 4.406456 TGTAGCACACAATCCCAAAGATT 58.594 39.130 0.00 0.00 46.54 2.40
2669 4214 4.832266 TGTAGCACACAATCCCAAAGATTT 59.168 37.500 0.00 0.00 42.86 2.17
2670 4215 4.961438 AGCACACAATCCCAAAGATTTT 57.039 36.364 0.00 0.00 42.86 1.82
2671 4216 6.491745 TGTAGCACACAATCCCAAAGATTTTA 59.508 34.615 0.00 0.00 42.86 1.52
2672 4217 6.418057 AGCACACAATCCCAAAGATTTTAA 57.582 33.333 0.00 0.00 42.86 1.52
2673 4218 6.825610 AGCACACAATCCCAAAGATTTTAAA 58.174 32.000 0.00 0.00 42.86 1.52
2674 4219 6.705825 AGCACACAATCCCAAAGATTTTAAAC 59.294 34.615 0.00 0.00 42.86 2.01
2675 4220 6.346518 GCACACAATCCCAAAGATTTTAAACG 60.347 38.462 0.00 0.00 42.86 3.60
2676 4221 6.145371 CACACAATCCCAAAGATTTTAAACGG 59.855 38.462 0.00 0.00 42.86 4.44
2677 4222 6.183360 ACACAATCCCAAAGATTTTAAACGGT 60.183 34.615 0.00 0.00 42.86 4.83
2678 4223 6.704050 CACAATCCCAAAGATTTTAAACGGTT 59.296 34.615 0.00 0.00 42.86 4.44
2679 4224 7.225734 CACAATCCCAAAGATTTTAAACGGTTT 59.774 33.333 11.33 11.33 42.86 3.27
2680 4225 7.771361 ACAATCCCAAAGATTTTAAACGGTTTT 59.229 29.630 11.87 0.00 42.86 2.43
2681 4226 7.722795 ATCCCAAAGATTTTAAACGGTTTTG 57.277 32.000 11.87 1.34 0.00 2.44
2682 4227 6.641474 TCCCAAAGATTTTAAACGGTTTTGT 58.359 32.000 11.87 0.00 0.00 2.83
2683 4228 7.779073 TCCCAAAGATTTTAAACGGTTTTGTA 58.221 30.769 11.87 0.00 0.00 2.41
2684 4229 8.255905 TCCCAAAGATTTTAAACGGTTTTGTAA 58.744 29.630 11.87 4.60 0.00 2.41
2685 4230 8.880750 CCCAAAGATTTTAAACGGTTTTGTAAA 58.119 29.630 11.87 10.21 0.00 2.01
2726 4271 9.503427 GAGCACTGTTATAATGTTAATTTGTCC 57.497 33.333 0.00 0.00 0.00 4.02
2727 4272 9.019656 AGCACTGTTATAATGTTAATTTGTCCA 57.980 29.630 0.00 0.00 0.00 4.02
2728 4273 9.072294 GCACTGTTATAATGTTAATTTGTCCAC 57.928 33.333 0.00 0.00 0.00 4.02
2745 4290 9.696917 ATTTGTCCACTTATCAGATTTCAAAAC 57.303 29.630 0.00 0.00 0.00 2.43
2746 4291 7.815840 TGTCCACTTATCAGATTTCAAAACA 57.184 32.000 0.00 0.00 0.00 2.83
2747 4292 8.408043 TGTCCACTTATCAGATTTCAAAACAT 57.592 30.769 0.00 0.00 0.00 2.71
2748 4293 8.859090 TGTCCACTTATCAGATTTCAAAACATT 58.141 29.630 0.00 0.00 0.00 2.71
2783 4328 8.686397 AAAAACAAAAACATTCTTTTGGCATC 57.314 26.923 12.09 0.00 46.18 3.91
2784 4329 5.655893 ACAAAAACATTCTTTTGGCATCG 57.344 34.783 12.09 0.00 46.18 3.84
2785 4330 4.024977 ACAAAAACATTCTTTTGGCATCGC 60.025 37.500 12.09 0.00 46.18 4.58
2797 4342 1.249407 GGCATCGCCTACTAGCTAGT 58.751 55.000 28.50 28.50 46.69 2.57
2798 4343 2.434428 GGCATCGCCTACTAGCTAGTA 58.566 52.381 27.73 27.73 46.69 1.82
2799 4344 3.018149 GGCATCGCCTACTAGCTAGTAT 58.982 50.000 29.24 15.62 46.69 2.12
2800 4345 3.444388 GGCATCGCCTACTAGCTAGTATT 59.556 47.826 29.24 10.46 46.69 1.89
2801 4346 4.082136 GGCATCGCCTACTAGCTAGTATTT 60.082 45.833 29.24 10.11 46.69 1.40
2802 4347 5.125097 GGCATCGCCTACTAGCTAGTATTTA 59.875 44.000 29.24 17.30 46.69 1.40
2803 4348 6.028987 GCATCGCCTACTAGCTAGTATTTAC 58.971 44.000 29.24 18.59 38.06 2.01
2804 4349 6.349115 GCATCGCCTACTAGCTAGTATTTACA 60.349 42.308 29.24 15.30 38.06 2.41
2805 4350 6.551385 TCGCCTACTAGCTAGTATTTACAC 57.449 41.667 29.24 15.76 38.06 2.90
2806 4351 6.057533 TCGCCTACTAGCTAGTATTTACACA 58.942 40.000 29.24 10.71 38.06 3.72
2807 4352 6.543465 TCGCCTACTAGCTAGTATTTACACAA 59.457 38.462 29.24 10.04 38.06 3.33
2808 4353 6.636044 CGCCTACTAGCTAGTATTTACACAAC 59.364 42.308 29.24 12.58 38.06 3.32
2809 4354 7.486647 GCCTACTAGCTAGTATTTACACAACA 58.513 38.462 29.24 8.89 38.06 3.33
2810 4355 8.142551 GCCTACTAGCTAGTATTTACACAACAT 58.857 37.037 29.24 5.19 38.06 2.71
2842 4387 7.948137 TGTTTTATATGCAAAATTTGTCTCGC 58.052 30.769 7.60 0.00 30.56 5.03
2843 4388 7.812191 TGTTTTATATGCAAAATTTGTCTCGCT 59.188 29.630 7.60 0.00 30.56 4.93
2844 4389 9.284594 GTTTTATATGCAAAATTTGTCTCGCTA 57.715 29.630 7.60 0.00 30.56 4.26
2845 4390 9.847706 TTTTATATGCAAAATTTGTCTCGCTAA 57.152 25.926 7.60 0.00 0.00 3.09
2846 4391 8.835467 TTATATGCAAAATTTGTCTCGCTAAC 57.165 30.769 7.60 0.00 0.00 2.34
2847 4392 3.896122 TGCAAAATTTGTCTCGCTAACC 58.104 40.909 7.60 0.00 0.00 2.85
2848 4393 3.568007 TGCAAAATTTGTCTCGCTAACCT 59.432 39.130 7.60 0.00 0.00 3.50
2849 4394 4.159120 GCAAAATTTGTCTCGCTAACCTC 58.841 43.478 7.60 0.00 0.00 3.85
2850 4395 4.320202 GCAAAATTTGTCTCGCTAACCTCA 60.320 41.667 7.60 0.00 0.00 3.86
2851 4396 5.619981 GCAAAATTTGTCTCGCTAACCTCAT 60.620 40.000 7.60 0.00 0.00 2.90
2852 4397 6.381801 CAAAATTTGTCTCGCTAACCTCATT 58.618 36.000 0.00 0.00 0.00 2.57
2853 4398 5.551760 AATTTGTCTCGCTAACCTCATTG 57.448 39.130 0.00 0.00 0.00 2.82
2854 4399 3.678056 TTGTCTCGCTAACCTCATTGT 57.322 42.857 0.00 0.00 0.00 2.71
2855 4400 3.232213 TGTCTCGCTAACCTCATTGTC 57.768 47.619 0.00 0.00 0.00 3.18
2856 4401 2.560981 TGTCTCGCTAACCTCATTGTCA 59.439 45.455 0.00 0.00 0.00 3.58
2857 4402 3.195610 TGTCTCGCTAACCTCATTGTCAT 59.804 43.478 0.00 0.00 0.00 3.06
2858 4403 4.401202 TGTCTCGCTAACCTCATTGTCATA 59.599 41.667 0.00 0.00 0.00 2.15
2859 4404 5.105513 TGTCTCGCTAACCTCATTGTCATAA 60.106 40.000 0.00 0.00 0.00 1.90
2860 4405 5.810587 GTCTCGCTAACCTCATTGTCATAAA 59.189 40.000 0.00 0.00 0.00 1.40
2861 4406 5.810587 TCTCGCTAACCTCATTGTCATAAAC 59.189 40.000 0.00 0.00 0.00 2.01
2862 4407 5.483811 TCGCTAACCTCATTGTCATAAACA 58.516 37.500 0.00 0.00 35.59 2.83
2863 4408 5.350365 TCGCTAACCTCATTGTCATAAACAC 59.650 40.000 0.00 0.00 37.70 3.32
2864 4409 5.447279 CGCTAACCTCATTGTCATAAACACC 60.447 44.000 0.00 0.00 37.70 4.16
2865 4410 5.414454 GCTAACCTCATTGTCATAAACACCA 59.586 40.000 0.00 0.00 37.70 4.17
2866 4411 6.072175 GCTAACCTCATTGTCATAAACACCAA 60.072 38.462 0.00 0.00 37.70 3.67
2867 4412 6.723298 AACCTCATTGTCATAAACACCAAA 57.277 33.333 0.00 0.00 37.70 3.28
2868 4413 6.723298 ACCTCATTGTCATAAACACCAAAA 57.277 33.333 0.00 0.00 37.70 2.44
2869 4414 7.301868 ACCTCATTGTCATAAACACCAAAAT 57.698 32.000 0.00 0.00 37.70 1.82
2870 4415 8.415950 ACCTCATTGTCATAAACACCAAAATA 57.584 30.769 0.00 0.00 37.70 1.40
2871 4416 8.303876 ACCTCATTGTCATAAACACCAAAATAC 58.696 33.333 0.00 0.00 37.70 1.89
2872 4417 7.759433 CCTCATTGTCATAAACACCAAAATACC 59.241 37.037 0.00 0.00 37.70 2.73
2873 4418 8.183104 TCATTGTCATAAACACCAAAATACCA 57.817 30.769 0.00 0.00 37.70 3.25
2874 4419 8.303156 TCATTGTCATAAACACCAAAATACCAG 58.697 33.333 0.00 0.00 37.70 4.00
2875 4420 7.589958 TTGTCATAAACACCAAAATACCAGT 57.410 32.000 0.00 0.00 37.70 4.00
2876 4421 6.976088 TGTCATAAACACCAAAATACCAGTG 58.024 36.000 0.00 0.00 36.30 3.66
2877 4422 6.015856 TGTCATAAACACCAAAATACCAGTGG 60.016 38.462 7.91 7.91 38.46 4.00
2878 4423 5.478679 TCATAAACACCAAAATACCAGTGGG 59.521 40.000 15.21 0.00 36.69 4.61
2879 4424 2.302587 ACACCAAAATACCAGTGGGG 57.697 50.000 15.21 6.21 41.91 4.96
2880 4425 1.783979 ACACCAAAATACCAGTGGGGA 59.216 47.619 15.21 0.55 38.14 4.81
2881 4426 2.178106 ACACCAAAATACCAGTGGGGAA 59.822 45.455 15.21 0.00 38.14 3.97
2882 4427 2.825532 CACCAAAATACCAGTGGGGAAG 59.174 50.000 15.21 0.00 38.14 3.46
2883 4428 2.719705 ACCAAAATACCAGTGGGGAAGA 59.280 45.455 15.21 0.00 41.15 2.87
2884 4429 3.141272 ACCAAAATACCAGTGGGGAAGAA 59.859 43.478 15.21 0.00 41.15 2.52
2885 4430 4.202781 ACCAAAATACCAGTGGGGAAGAAT 60.203 41.667 15.21 0.00 41.15 2.40
2886 4431 4.160252 CCAAAATACCAGTGGGGAAGAATG 59.840 45.833 15.21 3.60 41.15 2.67
2887 4432 2.736670 ATACCAGTGGGGAAGAATGC 57.263 50.000 15.21 0.00 41.15 3.56
2888 4433 1.367346 TACCAGTGGGGAAGAATGCA 58.633 50.000 15.21 0.00 41.15 3.96
2889 4434 0.251341 ACCAGTGGGGAAGAATGCAC 60.251 55.000 15.21 0.00 41.15 4.57
2890 4435 1.308069 CCAGTGGGGAAGAATGCACG 61.308 60.000 0.00 0.00 40.01 5.34
2891 4436 0.606401 CAGTGGGGAAGAATGCACGT 60.606 55.000 0.00 0.00 0.00 4.49
2892 4437 0.110486 AGTGGGGAAGAATGCACGTT 59.890 50.000 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 4.567959 GTGTACCATCAATAACACCGTACC 59.432 45.833 0.00 0.00 36.97 3.34
51 53 5.170021 TGTGTACCATCAATAACACCGTAC 58.830 41.667 0.00 0.00 41.17 3.67
52 54 5.402997 TGTGTACCATCAATAACACCGTA 57.597 39.130 0.00 0.00 41.17 4.02
53 55 4.274602 TGTGTACCATCAATAACACCGT 57.725 40.909 0.00 0.00 41.17 4.83
54 56 4.634004 ACATGTGTACCATCAATAACACCG 59.366 41.667 0.00 0.00 41.17 4.94
110 113 2.570415 TGGTTTCCTGCCACGAAATA 57.430 45.000 0.00 0.00 32.19 1.40
153 156 7.649306 GTGAACAATAAATCAAAGTCAACTGCT 59.351 33.333 0.00 0.00 0.00 4.24
316 321 9.622004 CAATATCAGCAATTAATCACTCATTCC 57.378 33.333 0.00 0.00 0.00 3.01
433 438 7.031917 AGGTCTATTATTACCCCTCCATTCAT 58.968 38.462 0.00 0.00 36.34 2.57
640 647 2.379972 AGACTAGTTCATCAGGACCCG 58.620 52.381 0.00 0.00 0.00 5.28
664 671 2.157738 GCTCAAACCAGTTCTGCTCAT 58.842 47.619 0.00 0.00 0.00 2.90
870 884 6.567687 TGAAGAAAGAAAACACACAAGTCA 57.432 33.333 0.00 0.00 0.00 3.41
1006 1022 2.229792 CTGCCACACCACATTGTTACT 58.770 47.619 0.00 0.00 0.00 2.24
1146 1162 1.380403 TTTGTGTGAAGGCGGTGGTG 61.380 55.000 0.00 0.00 0.00 4.17
1166 1182 7.575720 GCTTATGGAACTTGTGATAAACTTGCT 60.576 37.037 0.00 0.00 0.00 3.91
1237 1253 5.471556 TTGACATCATCAAAATTGGCACT 57.528 34.783 0.00 0.00 44.59 4.40
1595 3089 7.338703 AGACAATCTGAATCATATTGTGTTGCT 59.661 33.333 25.06 15.63 39.86 3.91
2027 3522 2.464796 TTTCCCTAGGGACGATGCTA 57.535 50.000 31.18 11.29 45.11 3.49
2089 3585 8.084684 ACAAGCTTATTTTTCAGGAATGAAGAC 58.915 33.333 0.00 0.00 0.00 3.01
2091 3587 8.822652 AACAAGCTTATTTTTCAGGAATGAAG 57.177 30.769 0.00 0.00 0.00 3.02
2316 3861 3.003173 TGCGGGCAAGGTAGCTCT 61.003 61.111 0.00 0.00 31.09 4.09
2377 3922 1.890876 TAGCAGCACGTTTGGTTCAT 58.109 45.000 6.81 0.00 0.00 2.57
2404 3949 2.685387 CTTAGCTCGGCTGGGCTACG 62.685 65.000 27.04 21.15 40.10 3.51
2489 4034 9.777297 AATGTTAGGTGTTTCATAGCAATTTTT 57.223 25.926 0.00 0.00 28.73 1.94
2490 4035 9.777297 AAATGTTAGGTGTTTCATAGCAATTTT 57.223 25.926 0.00 0.00 28.73 1.82
2493 4038 9.243105 ACTAAATGTTAGGTGTTTCATAGCAAT 57.757 29.630 0.47 0.00 28.73 3.56
2494 4039 8.630054 ACTAAATGTTAGGTGTTTCATAGCAA 57.370 30.769 0.47 0.00 28.73 3.91
2495 4040 8.630054 AACTAAATGTTAGGTGTTTCATAGCA 57.370 30.769 0.47 0.00 37.07 3.49
2496 4041 9.908152 AAAACTAAATGTTAGGTGTTTCATAGC 57.092 29.630 0.47 0.00 38.03 2.97
2560 4105 9.653287 CGCTTCATTAGGGTAATCAAAGATATA 57.347 33.333 0.00 0.00 32.41 0.86
2561 4106 7.607991 CCGCTTCATTAGGGTAATCAAAGATAT 59.392 37.037 0.00 0.00 35.13 1.63
2562 4107 6.934645 CCGCTTCATTAGGGTAATCAAAGATA 59.065 38.462 0.00 0.00 35.13 1.98
2563 4108 5.765182 CCGCTTCATTAGGGTAATCAAAGAT 59.235 40.000 0.00 0.00 35.13 2.40
2564 4109 5.123227 CCGCTTCATTAGGGTAATCAAAGA 58.877 41.667 0.00 0.00 35.13 2.52
2565 4110 4.275936 CCCGCTTCATTAGGGTAATCAAAG 59.724 45.833 0.00 0.00 40.27 2.77
2566 4111 4.204012 CCCGCTTCATTAGGGTAATCAAA 58.796 43.478 0.00 0.00 40.27 2.69
2567 4112 3.815809 CCCGCTTCATTAGGGTAATCAA 58.184 45.455 0.00 0.00 40.27 2.57
2568 4113 3.485463 CCCGCTTCATTAGGGTAATCA 57.515 47.619 0.00 0.00 40.27 2.57
2575 4120 0.466189 ATGGCACCCGCTTCATTAGG 60.466 55.000 0.00 0.00 38.60 2.69
2576 4121 0.664761 CATGGCACCCGCTTCATTAG 59.335 55.000 0.00 0.00 38.60 1.73
2577 4122 1.383456 GCATGGCACCCGCTTCATTA 61.383 55.000 0.00 0.00 38.60 1.90
2578 4123 2.713967 GCATGGCACCCGCTTCATT 61.714 57.895 0.00 0.00 38.60 2.57
2579 4124 3.142838 GCATGGCACCCGCTTCAT 61.143 61.111 0.00 0.00 38.60 2.57
2580 4125 4.657408 TGCATGGCACCCGCTTCA 62.657 61.111 6.89 0.00 38.60 3.02
2581 4126 3.818787 CTGCATGGCACCCGCTTC 61.819 66.667 6.89 0.00 38.60 3.86
2582 4127 3.866379 TTCTGCATGGCACCCGCTT 62.866 57.895 6.89 0.00 38.60 4.68
2583 4128 3.866379 TTTCTGCATGGCACCCGCT 62.866 57.895 6.89 0.00 38.60 5.52
2584 4129 2.433231 TTTTTCTGCATGGCACCCGC 62.433 55.000 0.00 0.00 33.79 6.13
2585 4130 0.247185 ATTTTTCTGCATGGCACCCG 59.753 50.000 0.00 0.00 33.79 5.28
2586 4131 1.275856 TGATTTTTCTGCATGGCACCC 59.724 47.619 0.00 0.00 33.79 4.61
2587 4132 2.747396 TGATTTTTCTGCATGGCACC 57.253 45.000 0.00 0.00 33.79 5.01
2588 4133 5.410439 AGAAATTGATTTTTCTGCATGGCAC 59.590 36.000 0.00 0.00 42.78 5.01
2589 4134 5.553123 AGAAATTGATTTTTCTGCATGGCA 58.447 33.333 0.00 0.00 42.78 4.92
2590 4135 6.490566 AAGAAATTGATTTTTCTGCATGGC 57.509 33.333 0.00 0.00 43.42 4.40
2602 4147 8.413229 CGGACCACCATATAAAAGAAATTGATT 58.587 33.333 0.00 0.00 35.59 2.57
2603 4148 7.470009 GCGGACCACCATATAAAAGAAATTGAT 60.470 37.037 0.00 0.00 35.59 2.57
2604 4149 6.183360 GCGGACCACCATATAAAAGAAATTGA 60.183 38.462 0.00 0.00 35.59 2.57
2605 4150 5.977129 GCGGACCACCATATAAAAGAAATTG 59.023 40.000 0.00 0.00 35.59 2.32
2606 4151 5.891551 AGCGGACCACCATATAAAAGAAATT 59.108 36.000 0.00 0.00 35.59 1.82
2607 4152 5.445964 AGCGGACCACCATATAAAAGAAAT 58.554 37.500 0.00 0.00 35.59 2.17
2608 4153 4.850680 AGCGGACCACCATATAAAAGAAA 58.149 39.130 0.00 0.00 35.59 2.52
2609 4154 4.497291 AGCGGACCACCATATAAAAGAA 57.503 40.909 0.00 0.00 35.59 2.52
2610 4155 5.818678 ATAGCGGACCACCATATAAAAGA 57.181 39.130 0.00 0.00 35.59 2.52
2611 4156 6.092259 GCTAATAGCGGACCACCATATAAAAG 59.908 42.308 0.00 0.00 35.59 2.27
2612 4157 5.935789 GCTAATAGCGGACCACCATATAAAA 59.064 40.000 0.00 0.00 35.59 1.52
2613 4158 5.484715 GCTAATAGCGGACCACCATATAAA 58.515 41.667 0.00 0.00 35.59 1.40
2614 4159 5.080969 GCTAATAGCGGACCACCATATAA 57.919 43.478 0.00 0.00 35.59 0.98
2615 4160 4.730949 GCTAATAGCGGACCACCATATA 57.269 45.455 0.00 0.00 35.59 0.86
2616 4161 3.611766 GCTAATAGCGGACCACCATAT 57.388 47.619 0.00 0.00 35.59 1.78
2645 4190 4.218417 AATCTTTGGGATTGTGTGCTACAC 59.782 41.667 11.13 11.13 42.46 2.90
2646 4191 3.500448 TCTTTGGGATTGTGTGCTACA 57.500 42.857 0.00 0.00 37.56 2.74
2647 4192 5.391312 AAATCTTTGGGATTGTGTGCTAC 57.609 39.130 0.00 0.00 43.17 3.58
2648 4193 7.531857 TTAAAATCTTTGGGATTGTGTGCTA 57.468 32.000 0.00 0.00 43.17 3.49
2649 4194 4.961438 AAAATCTTTGGGATTGTGTGCT 57.039 36.364 0.00 0.00 43.17 4.40
2650 4195 6.346518 CGTTTAAAATCTTTGGGATTGTGTGC 60.347 38.462 0.00 0.00 43.17 4.57
2651 4196 6.145371 CCGTTTAAAATCTTTGGGATTGTGTG 59.855 38.462 0.00 0.00 43.17 3.82
2652 4197 6.183360 ACCGTTTAAAATCTTTGGGATTGTGT 60.183 34.615 0.00 0.00 43.17 3.72
2653 4198 6.220201 ACCGTTTAAAATCTTTGGGATTGTG 58.780 36.000 0.00 0.00 43.17 3.33
2654 4199 6.413783 ACCGTTTAAAATCTTTGGGATTGT 57.586 33.333 0.00 0.00 43.17 2.71
2655 4200 7.722795 AAACCGTTTAAAATCTTTGGGATTG 57.277 32.000 0.00 0.00 43.17 2.67
2656 4201 7.771361 ACAAAACCGTTTAAAATCTTTGGGATT 59.229 29.630 0.00 0.00 45.61 3.01
2657 4202 7.276658 ACAAAACCGTTTAAAATCTTTGGGAT 58.723 30.769 0.00 0.00 35.97 3.85
2658 4203 6.641474 ACAAAACCGTTTAAAATCTTTGGGA 58.359 32.000 0.00 0.00 0.00 4.37
2659 4204 6.912203 ACAAAACCGTTTAAAATCTTTGGG 57.088 33.333 0.00 0.00 0.00 4.12
2700 4245 9.503427 GGACAAATTAACATTATAACAGTGCTC 57.497 33.333 0.00 0.00 0.00 4.26
2701 4246 9.019656 TGGACAAATTAACATTATAACAGTGCT 57.980 29.630 0.00 0.00 0.00 4.40
2702 4247 9.072294 GTGGACAAATTAACATTATAACAGTGC 57.928 33.333 0.00 0.00 0.00 4.40
2719 4264 9.696917 GTTTTGAAATCTGATAAGTGGACAAAT 57.303 29.630 0.00 0.00 0.00 2.32
2720 4265 8.690884 TGTTTTGAAATCTGATAAGTGGACAAA 58.309 29.630 0.00 0.00 0.00 2.83
2721 4266 8.231692 TGTTTTGAAATCTGATAAGTGGACAA 57.768 30.769 0.00 0.00 0.00 3.18
2722 4267 7.815840 TGTTTTGAAATCTGATAAGTGGACA 57.184 32.000 0.00 0.00 0.00 4.02
2758 4303 7.484324 CGATGCCAAAAGAATGTTTTTGTTTTT 59.516 29.630 11.68 0.00 0.00 1.94
2759 4304 6.966066 CGATGCCAAAAGAATGTTTTTGTTTT 59.034 30.769 11.68 0.00 0.00 2.43
2760 4305 6.485393 CGATGCCAAAAGAATGTTTTTGTTT 58.515 32.000 11.68 0.00 0.00 2.83
2761 4306 5.503846 GCGATGCCAAAAGAATGTTTTTGTT 60.504 36.000 11.68 0.84 0.00 2.83
2762 4307 4.024977 GCGATGCCAAAAGAATGTTTTTGT 60.025 37.500 11.68 0.00 0.00 2.83
2763 4308 4.456914 GCGATGCCAAAAGAATGTTTTTG 58.543 39.130 7.58 7.58 0.00 2.44
2764 4309 4.730600 GCGATGCCAAAAGAATGTTTTT 57.269 36.364 0.00 0.00 0.00 1.94
2773 4318 8.397096 TACTAGCTAGTAGGCGATGCCAAAAG 62.397 46.154 26.36 0.00 43.50 2.27
2774 4319 6.673980 TACTAGCTAGTAGGCGATGCCAAAA 61.674 44.000 26.36 4.48 43.50 2.44
2775 4320 5.230990 TACTAGCTAGTAGGCGATGCCAAA 61.231 45.833 26.36 4.91 43.50 3.28
2776 4321 3.749632 TACTAGCTAGTAGGCGATGCCAA 60.750 47.826 26.36 5.11 43.50 4.52
2777 4322 2.224695 TACTAGCTAGTAGGCGATGCCA 60.225 50.000 26.36 5.61 43.50 4.92
2778 4323 2.434428 TACTAGCTAGTAGGCGATGCC 58.566 52.381 26.36 0.00 42.38 4.40
2779 4324 4.705337 AATACTAGCTAGTAGGCGATGC 57.295 45.455 31.43 0.00 41.62 3.91
2780 4325 7.022384 GTGTAAATACTAGCTAGTAGGCGATG 58.978 42.308 31.43 4.71 41.62 3.84
2781 4326 6.713903 TGTGTAAATACTAGCTAGTAGGCGAT 59.286 38.462 31.43 17.48 41.62 4.58
2782 4327 6.057533 TGTGTAAATACTAGCTAGTAGGCGA 58.942 40.000 31.43 16.09 41.62 5.54
2783 4328 6.309712 TGTGTAAATACTAGCTAGTAGGCG 57.690 41.667 31.43 6.80 41.62 5.52
2784 4329 7.486647 TGTTGTGTAAATACTAGCTAGTAGGC 58.513 38.462 31.43 22.08 41.62 3.93
2816 4361 8.594687 GCGAGACAAATTTTGCATATAAAACAT 58.405 29.630 9.04 0.00 32.86 2.71
2817 4362 7.812191 AGCGAGACAAATTTTGCATATAAAACA 59.188 29.630 9.04 0.00 32.86 2.83
2818 4363 8.173321 AGCGAGACAAATTTTGCATATAAAAC 57.827 30.769 9.04 0.00 32.86 2.43
2819 4364 9.847706 TTAGCGAGACAAATTTTGCATATAAAA 57.152 25.926 9.04 0.00 34.39 1.52
2820 4365 9.284594 GTTAGCGAGACAAATTTTGCATATAAA 57.715 29.630 9.04 0.00 0.00 1.40
2821 4366 7.913297 GGTTAGCGAGACAAATTTTGCATATAA 59.087 33.333 9.04 0.01 0.00 0.98
2822 4367 7.282224 AGGTTAGCGAGACAAATTTTGCATATA 59.718 33.333 9.04 0.00 0.00 0.86
2823 4368 6.095440 AGGTTAGCGAGACAAATTTTGCATAT 59.905 34.615 9.04 0.00 0.00 1.78
2824 4369 5.414454 AGGTTAGCGAGACAAATTTTGCATA 59.586 36.000 9.04 0.00 0.00 3.14
2825 4370 4.218417 AGGTTAGCGAGACAAATTTTGCAT 59.782 37.500 9.04 0.00 0.00 3.96
2826 4371 3.568007 AGGTTAGCGAGACAAATTTTGCA 59.432 39.130 9.04 0.00 0.00 4.08
2827 4372 4.159120 GAGGTTAGCGAGACAAATTTTGC 58.841 43.478 9.04 2.76 0.00 3.68
2828 4373 5.356882 TGAGGTTAGCGAGACAAATTTTG 57.643 39.130 7.59 7.59 0.00 2.44
2829 4374 6.016276 ACAATGAGGTTAGCGAGACAAATTTT 60.016 34.615 0.00 0.00 0.00 1.82
2830 4375 5.473504 ACAATGAGGTTAGCGAGACAAATTT 59.526 36.000 0.00 0.00 0.00 1.82
2831 4376 5.003804 ACAATGAGGTTAGCGAGACAAATT 58.996 37.500 0.00 0.00 0.00 1.82
2832 4377 4.579869 ACAATGAGGTTAGCGAGACAAAT 58.420 39.130 0.00 0.00 0.00 2.32
2833 4378 3.994392 GACAATGAGGTTAGCGAGACAAA 59.006 43.478 0.00 0.00 0.00 2.83
2834 4379 3.006430 TGACAATGAGGTTAGCGAGACAA 59.994 43.478 0.00 0.00 0.00 3.18
2835 4380 2.560981 TGACAATGAGGTTAGCGAGACA 59.439 45.455 0.00 0.00 0.00 3.41
2836 4381 3.232213 TGACAATGAGGTTAGCGAGAC 57.768 47.619 0.00 0.00 0.00 3.36
2837 4382 5.592104 TTATGACAATGAGGTTAGCGAGA 57.408 39.130 0.00 0.00 0.00 4.04
2838 4383 5.580691 TGTTTATGACAATGAGGTTAGCGAG 59.419 40.000 0.00 0.00 34.69 5.03
2839 4384 5.350365 GTGTTTATGACAATGAGGTTAGCGA 59.650 40.000 0.00 0.00 40.65 4.93
2840 4385 5.447279 GGTGTTTATGACAATGAGGTTAGCG 60.447 44.000 0.00 0.00 40.65 4.26
2841 4386 5.414454 TGGTGTTTATGACAATGAGGTTAGC 59.586 40.000 0.00 0.00 40.65 3.09
2842 4387 7.447374 TTGGTGTTTATGACAATGAGGTTAG 57.553 36.000 0.00 0.00 40.65 2.34
2843 4388 7.825331 TTTGGTGTTTATGACAATGAGGTTA 57.175 32.000 0.00 0.00 40.65 2.85
2844 4389 6.723298 TTTGGTGTTTATGACAATGAGGTT 57.277 33.333 0.00 0.00 40.65 3.50
2845 4390 6.723298 TTTTGGTGTTTATGACAATGAGGT 57.277 33.333 0.00 0.00 40.65 3.85
2846 4391 7.759433 GGTATTTTGGTGTTTATGACAATGAGG 59.241 37.037 0.00 0.00 40.65 3.86
2847 4392 8.303156 TGGTATTTTGGTGTTTATGACAATGAG 58.697 33.333 0.00 0.00 40.65 2.90
2848 4393 8.183104 TGGTATTTTGGTGTTTATGACAATGA 57.817 30.769 0.00 0.00 40.65 2.57
2849 4394 8.087750 ACTGGTATTTTGGTGTTTATGACAATG 58.912 33.333 0.00 0.00 40.65 2.82
2850 4395 8.087750 CACTGGTATTTTGGTGTTTATGACAAT 58.912 33.333 0.00 0.00 40.65 2.71
2851 4396 7.429633 CACTGGTATTTTGGTGTTTATGACAA 58.570 34.615 0.00 0.00 40.65 3.18
2852 4397 6.015856 CCACTGGTATTTTGGTGTTTATGACA 60.016 38.462 0.00 0.00 35.42 3.58
2853 4398 6.386654 CCACTGGTATTTTGGTGTTTATGAC 58.613 40.000 0.00 0.00 0.00 3.06
2854 4399 5.478679 CCCACTGGTATTTTGGTGTTTATGA 59.521 40.000 0.00 0.00 0.00 2.15
2855 4400 5.337169 CCCCACTGGTATTTTGGTGTTTATG 60.337 44.000 0.00 0.00 0.00 1.90
2856 4401 4.775253 CCCCACTGGTATTTTGGTGTTTAT 59.225 41.667 0.00 0.00 0.00 1.40
2857 4402 4.140994 TCCCCACTGGTATTTTGGTGTTTA 60.141 41.667 0.00 0.00 34.77 2.01
2858 4403 2.969262 CCCCACTGGTATTTTGGTGTTT 59.031 45.455 0.00 0.00 0.00 2.83
2859 4404 2.178106 TCCCCACTGGTATTTTGGTGTT 59.822 45.455 0.00 0.00 34.77 3.32
2860 4405 1.783979 TCCCCACTGGTATTTTGGTGT 59.216 47.619 0.00 0.00 34.77 4.16
2861 4406 2.595750 TCCCCACTGGTATTTTGGTG 57.404 50.000 0.00 0.00 34.77 4.17
2862 4407 2.719705 TCTTCCCCACTGGTATTTTGGT 59.280 45.455 0.00 0.00 34.77 3.67
2863 4408 3.449746 TCTTCCCCACTGGTATTTTGG 57.550 47.619 0.00 0.00 34.77 3.28
2864 4409 4.381932 GCATTCTTCCCCACTGGTATTTTG 60.382 45.833 0.00 0.00 34.77 2.44
2865 4410 3.769300 GCATTCTTCCCCACTGGTATTTT 59.231 43.478 0.00 0.00 34.77 1.82
2866 4411 3.245586 TGCATTCTTCCCCACTGGTATTT 60.246 43.478 0.00 0.00 34.77 1.40
2867 4412 2.311542 TGCATTCTTCCCCACTGGTATT 59.688 45.455 0.00 0.00 34.77 1.89
2868 4413 1.922447 TGCATTCTTCCCCACTGGTAT 59.078 47.619 0.00 0.00 34.77 2.73
2869 4414 1.004277 GTGCATTCTTCCCCACTGGTA 59.996 52.381 0.00 0.00 34.77 3.25
2870 4415 0.251341 GTGCATTCTTCCCCACTGGT 60.251 55.000 0.00 0.00 34.77 4.00
2871 4416 1.308069 CGTGCATTCTTCCCCACTGG 61.308 60.000 0.00 0.00 0.00 4.00
2872 4417 0.606401 ACGTGCATTCTTCCCCACTG 60.606 55.000 0.00 0.00 0.00 3.66
2873 4418 0.110486 AACGTGCATTCTTCCCCACT 59.890 50.000 0.00 0.00 0.00 4.00
2874 4419 2.641197 AACGTGCATTCTTCCCCAC 58.359 52.632 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.