Multiple sequence alignment - TraesCS5B01G300500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G300500 chr5B 100.000 2216 0 0 1 2216 485571324 485569109 0.000000e+00 4093.0
1 TraesCS5B01G300500 chr5B 82.216 343 49 6 1496 1826 126153007 126152665 3.600000e-73 285.0
2 TraesCS5B01G300500 chr5B 74.396 414 72 24 999 1388 485590084 485589681 1.770000e-31 147.0
3 TraesCS5B01G300500 chr5B 94.444 36 2 0 1396 1431 650560188 650560153 3.070000e-04 56.5
4 TraesCS5B01G300500 chr5D 88.565 1408 95 25 616 1988 404259772 404258396 0.000000e+00 1648.0
5 TraesCS5B01G300500 chr5D 87.097 403 37 7 943 1334 404253520 404253122 2.020000e-120 442.0
6 TraesCS5B01G300500 chr5D 96.218 238 7 2 1980 2216 404256380 404256144 2.670000e-104 388.0
7 TraesCS5B01G300500 chr5D 96.218 238 8 1 1980 2216 404256859 404256622 2.670000e-104 388.0
8 TraesCS5B01G300500 chr5D 87.926 323 28 8 616 938 404254055 404253744 9.670000e-99 370.0
9 TraesCS5B01G300500 chr5D 83.383 337 40 12 1497 1826 408214373 408214046 4.630000e-77 298.0
10 TraesCS5B01G300500 chr5D 82.687 335 19 21 260 567 404260212 404259890 6.070000e-66 261.0
11 TraesCS5B01G300500 chr5D 77.778 423 60 18 964 1378 404240226 404239830 1.710000e-56 230.0
12 TraesCS5B01G300500 chr5D 77.667 300 40 19 999 1274 404382768 404382472 8.190000e-35 158.0
13 TraesCS5B01G300500 chr5D 96.491 57 2 0 547 603 404254093 404254037 6.510000e-16 95.3
14 TraesCS5B01G300500 chr5A 88.903 802 40 15 616 1387 509977898 509978680 0.000000e+00 942.0
15 TraesCS5B01G300500 chr5A 81.414 382 50 10 963 1329 509985504 509985879 2.150000e-75 292.0
16 TraesCS5B01G300500 chr5A 87.562 201 11 6 370 567 509977507 509977696 1.030000e-53 220.0
17 TraesCS5B01G300500 chr5A 92.683 41 3 0 1391 1431 645275163 645275123 2.380000e-05 60.2
18 TraesCS5B01G300500 chr6A 86.503 326 39 4 1497 1819 1804099 1803776 9.730000e-94 353.0
19 TraesCS5B01G300500 chr1B 84.894 331 37 10 1498 1821 637902042 637901718 2.740000e-84 322.0
20 TraesCS5B01G300500 chr1B 90.476 42 4 0 1386 1427 51601811 51601852 3.070000e-04 56.5
21 TraesCS5B01G300500 chr4D 82.934 334 45 10 1498 1821 449457580 449457249 7.740000e-75 291.0
22 TraesCS5B01G300500 chr4B 80.712 337 55 6 1497 1826 31318693 31319026 1.020000e-63 254.0
23 TraesCS5B01G300500 chr7A 80.415 337 50 9 1497 1821 672151165 672151497 2.200000e-60 243.0
24 TraesCS5B01G300500 chr4A 79.257 323 57 8 1507 1821 694851711 694851391 1.330000e-52 217.0
25 TraesCS5B01G300500 chr2B 91.071 56 5 0 1439 1494 397601133 397601188 2.360000e-10 76.8
26 TraesCS5B01G300500 chr3D 97.500 40 1 0 2076 2115 403911869 403911908 3.950000e-08 69.4
27 TraesCS5B01G300500 chr3A 92.000 50 3 1 1385 1434 9073159 9073207 3.950000e-08 69.4
28 TraesCS5B01G300500 chr3A 95.122 41 1 1 2076 2115 526506836 526506876 1.840000e-06 63.9
29 TraesCS5B01G300500 chr6D 90.000 50 4 1 1381 1430 368363669 368363621 1.840000e-06 63.9
30 TraesCS5B01G300500 chr6B 92.857 42 3 0 1389 1430 544695624 544695583 6.610000e-06 62.1
31 TraesCS5B01G300500 chr3B 100.000 32 0 0 1396 1427 779581009 779580978 2.380000e-05 60.2
32 TraesCS5B01G300500 chr2A 100.000 31 0 0 1400 1430 179669551 179669521 8.550000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G300500 chr5B 485569109 485571324 2215 True 4093.000000 4093 100.000000 1 2216 1 chr5B.!!$R2 2215
1 TraesCS5B01G300500 chr5D 404253122 404260212 7090 True 513.185714 1648 90.743143 260 2216 7 chr5D.!!$R4 1956
2 TraesCS5B01G300500 chr5A 509977507 509978680 1173 False 581.000000 942 88.232500 370 1387 2 chr5A.!!$F2 1017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 430 0.030369 GCCGGTCGTCAGATTCGTAT 59.97 55.0 1.9 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1811 0.035317 TATTATGCAGAGGCTGGGCG 59.965 55.0 0.0 0.0 41.91 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.791327 ATTTTCCAATTTGTTTGAACTTGACT 57.209 26.923 0.00 0.00 37.53 3.41
28 29 8.614469 TTTTCCAATTTGTTTGAACTTGACTT 57.386 26.923 0.00 0.00 37.53 3.01
29 30 7.593875 TTCCAATTTGTTTGAACTTGACTTG 57.406 32.000 0.00 0.00 37.53 3.16
30 31 5.580297 TCCAATTTGTTTGAACTTGACTTGC 59.420 36.000 0.00 0.00 37.53 4.01
31 32 5.581874 CCAATTTGTTTGAACTTGACTTGCT 59.418 36.000 0.00 0.00 37.53 3.91
32 33 6.237915 CCAATTTGTTTGAACTTGACTTGCTC 60.238 38.462 0.00 0.00 37.53 4.26
33 34 5.384063 TTTGTTTGAACTTGACTTGCTCA 57.616 34.783 0.00 0.00 0.00 4.26
34 35 5.384063 TTGTTTGAACTTGACTTGCTCAA 57.616 34.783 0.00 0.00 36.46 3.02
41 42 2.627515 TTGACTTGCTCAAGCTGTCT 57.372 45.000 20.49 0.00 41.99 3.41
42 43 3.751479 TTGACTTGCTCAAGCTGTCTA 57.249 42.857 20.49 14.53 41.99 2.59
43 44 3.309961 TGACTTGCTCAAGCTGTCTAG 57.690 47.619 20.49 7.95 41.99 2.43
44 45 2.630098 TGACTTGCTCAAGCTGTCTAGT 59.370 45.455 20.49 10.18 41.99 2.57
45 46 3.070159 TGACTTGCTCAAGCTGTCTAGTT 59.930 43.478 20.49 0.00 41.99 2.24
46 47 3.397482 ACTTGCTCAAGCTGTCTAGTTG 58.603 45.455 9.36 0.00 41.99 3.16
47 48 1.800805 TGCTCAAGCTGTCTAGTTGC 58.199 50.000 3.32 0.00 42.66 4.17
48 49 1.070601 TGCTCAAGCTGTCTAGTTGCA 59.929 47.619 3.32 0.00 42.66 4.08
49 50 2.289882 TGCTCAAGCTGTCTAGTTGCAT 60.290 45.455 3.32 0.00 42.66 3.96
50 51 3.055891 TGCTCAAGCTGTCTAGTTGCATA 60.056 43.478 3.32 0.00 42.66 3.14
51 52 3.935203 GCTCAAGCTGTCTAGTTGCATAA 59.065 43.478 0.00 0.00 38.21 1.90
52 53 4.201763 GCTCAAGCTGTCTAGTTGCATAAC 60.202 45.833 0.00 0.00 38.21 1.89
53 54 6.366371 GCTCAAGCTGTCTAGTTGCATAACT 61.366 44.000 0.00 0.00 42.88 2.24
54 55 4.931601 TCAAGCTGTCTAGTTGCATAACTG 59.068 41.667 1.14 0.00 46.28 3.16
55 56 4.808414 AGCTGTCTAGTTGCATAACTGA 57.192 40.909 1.14 0.00 46.28 3.41
56 57 4.499183 AGCTGTCTAGTTGCATAACTGAC 58.501 43.478 1.14 7.48 46.28 3.51
57 58 4.021104 AGCTGTCTAGTTGCATAACTGACA 60.021 41.667 16.21 16.21 46.28 3.58
58 59 4.690748 GCTGTCTAGTTGCATAACTGACAA 59.309 41.667 17.07 8.01 46.28 3.18
59 60 5.352569 GCTGTCTAGTTGCATAACTGACAAT 59.647 40.000 17.07 0.00 46.28 2.71
60 61 6.456181 GCTGTCTAGTTGCATAACTGACAATC 60.456 42.308 17.07 11.76 46.28 2.67
61 62 6.701340 TGTCTAGTTGCATAACTGACAATCT 58.299 36.000 15.41 0.00 46.28 2.40
62 63 6.813649 TGTCTAGTTGCATAACTGACAATCTC 59.186 38.462 15.41 0.00 46.28 2.75
63 64 6.813649 GTCTAGTTGCATAACTGACAATCTCA 59.186 38.462 1.14 0.00 46.28 3.27
64 65 7.331934 GTCTAGTTGCATAACTGACAATCTCAA 59.668 37.037 1.14 0.00 46.28 3.02
65 66 6.882610 AGTTGCATAACTGACAATCTCAAA 57.117 33.333 0.00 0.00 45.17 2.69
66 67 7.275888 AGTTGCATAACTGACAATCTCAAAA 57.724 32.000 0.00 0.00 45.17 2.44
67 68 7.365741 AGTTGCATAACTGACAATCTCAAAAG 58.634 34.615 0.00 0.00 45.17 2.27
68 69 7.229306 AGTTGCATAACTGACAATCTCAAAAGA 59.771 33.333 0.00 0.00 45.17 2.52
69 70 7.509141 TGCATAACTGACAATCTCAAAAGAA 57.491 32.000 0.00 0.00 34.49 2.52
70 71 8.114331 TGCATAACTGACAATCTCAAAAGAAT 57.886 30.769 0.00 0.00 34.49 2.40
71 72 8.024865 TGCATAACTGACAATCTCAAAAGAATG 58.975 33.333 0.00 0.00 38.23 2.67
72 73 8.025445 GCATAACTGACAATCTCAAAAGAATGT 58.975 33.333 0.00 0.00 46.12 2.71
73 74 9.903682 CATAACTGACAATCTCAAAAGAATGTT 57.096 29.630 0.00 0.00 44.02 2.71
75 76 8.862550 AACTGACAATCTCAAAAGAATGTTTC 57.137 30.769 0.00 0.00 44.02 2.78
76 77 7.999679 ACTGACAATCTCAAAAGAATGTTTCA 58.000 30.769 0.00 0.00 44.02 2.69
77 78 8.133627 ACTGACAATCTCAAAAGAATGTTTCAG 58.866 33.333 9.21 9.21 44.02 3.02
78 79 8.224389 TGACAATCTCAAAAGAATGTTTCAGA 57.776 30.769 0.00 0.00 44.02 3.27
79 80 8.685427 TGACAATCTCAAAAGAATGTTTCAGAA 58.315 29.630 0.00 0.00 44.02 3.02
80 81 9.688592 GACAATCTCAAAAGAATGTTTCAGAAT 57.311 29.630 0.00 0.00 44.02 2.40
113 114 7.509141 TTTTGAGTTGTTGATTGCTATCTCA 57.491 32.000 9.55 6.19 0.00 3.27
114 115 7.509141 TTTGAGTTGTTGATTGCTATCTCAA 57.491 32.000 9.55 11.09 38.38 3.02
115 116 7.509141 TTGAGTTGTTGATTGCTATCTCAAA 57.491 32.000 9.55 0.00 37.61 2.69
116 117 7.509141 TGAGTTGTTGATTGCTATCTCAAAA 57.491 32.000 9.55 0.00 33.45 2.44
117 118 7.939782 TGAGTTGTTGATTGCTATCTCAAAAA 58.060 30.769 9.55 0.00 33.45 1.94
118 119 7.862372 TGAGTTGTTGATTGCTATCTCAAAAAC 59.138 33.333 9.55 9.00 44.51 2.43
119 120 7.715657 AGTTGTTGATTGCTATCTCAAAAACA 58.284 30.769 16.46 11.37 45.68 2.83
120 121 8.196771 AGTTGTTGATTGCTATCTCAAAAACAA 58.803 29.630 16.46 15.14 45.68 2.83
121 122 8.981647 GTTGTTGATTGCTATCTCAAAAACAAT 58.018 29.630 18.99 0.00 43.99 2.71
122 123 8.746922 TGTTGATTGCTATCTCAAAAACAATC 57.253 30.769 9.55 0.00 42.22 2.67
123 124 8.358895 TGTTGATTGCTATCTCAAAAACAATCA 58.641 29.630 11.10 11.10 46.86 2.57
125 126 8.746922 TGATTGCTATCTCAAAAACAATCAAC 57.253 30.769 12.38 0.00 46.06 3.18
126 127 8.358895 TGATTGCTATCTCAAAAACAATCAACA 58.641 29.630 12.38 0.00 46.06 3.33
127 128 9.195411 GATTGCTATCTCAAAAACAATCAACAA 57.805 29.630 8.27 0.00 41.75 2.83
128 129 7.928908 TGCTATCTCAAAAACAATCAACAAC 57.071 32.000 0.00 0.00 0.00 3.32
129 130 7.715657 TGCTATCTCAAAAACAATCAACAACT 58.284 30.769 0.00 0.00 0.00 3.16
130 131 7.862372 TGCTATCTCAAAAACAATCAACAACTC 59.138 33.333 0.00 0.00 0.00 3.01
131 132 7.862372 GCTATCTCAAAAACAATCAACAACTCA 59.138 33.333 0.00 0.00 0.00 3.41
132 133 9.734620 CTATCTCAAAAACAATCAACAACTCAA 57.265 29.630 0.00 0.00 0.00 3.02
134 135 8.824159 TCTCAAAAACAATCAACAACTCAAAA 57.176 26.923 0.00 0.00 0.00 2.44
135 136 9.265901 TCTCAAAAACAATCAACAACTCAAAAA 57.734 25.926 0.00 0.00 0.00 1.94
155 156 4.174305 AAAAACACCTCCTGCCGG 57.826 55.556 0.00 0.00 0.00 6.13
156 157 1.530655 AAAAACACCTCCTGCCGGG 60.531 57.895 2.18 0.00 0.00 5.73
157 158 2.292785 AAAAACACCTCCTGCCGGGT 62.293 55.000 2.18 0.00 36.07 5.28
158 159 2.692273 AAAACACCTCCTGCCGGGTC 62.692 60.000 2.18 0.00 32.95 4.46
162 163 3.470888 CCTCCTGCCGGGTCGAAT 61.471 66.667 2.18 0.00 36.25 3.34
163 164 2.131709 CCTCCTGCCGGGTCGAATA 61.132 63.158 2.18 0.00 36.25 1.75
164 165 1.472662 CCTCCTGCCGGGTCGAATAT 61.473 60.000 2.18 0.00 36.25 1.28
165 166 0.319900 CTCCTGCCGGGTCGAATATG 60.320 60.000 2.18 0.00 36.25 1.78
166 167 1.046472 TCCTGCCGGGTCGAATATGT 61.046 55.000 2.18 0.00 36.25 2.29
167 168 0.600255 CCTGCCGGGTCGAATATGTC 60.600 60.000 2.18 0.00 0.00 3.06
168 169 0.104120 CTGCCGGGTCGAATATGTCA 59.896 55.000 2.18 0.00 0.00 3.58
169 170 0.104120 TGCCGGGTCGAATATGTCAG 59.896 55.000 2.18 0.00 0.00 3.51
170 171 0.104304 GCCGGGTCGAATATGTCAGT 59.896 55.000 2.18 0.00 0.00 3.41
171 172 1.852942 CCGGGTCGAATATGTCAGTG 58.147 55.000 0.00 0.00 0.00 3.66
172 173 1.407618 CCGGGTCGAATATGTCAGTGA 59.592 52.381 0.00 0.00 0.00 3.41
173 174 2.460918 CGGGTCGAATATGTCAGTGAC 58.539 52.381 16.68 16.68 0.00 3.67
174 175 2.460918 GGGTCGAATATGTCAGTGACG 58.539 52.381 18.17 5.55 34.95 4.35
175 176 2.159282 GGGTCGAATATGTCAGTGACGT 60.159 50.000 21.26 21.26 34.95 4.34
176 177 3.106672 GGTCGAATATGTCAGTGACGTC 58.893 50.000 21.15 9.11 34.95 4.34
177 178 3.427098 GGTCGAATATGTCAGTGACGTCA 60.427 47.826 21.15 15.76 34.95 4.35
178 179 3.542704 GTCGAATATGTCAGTGACGTCAC 59.457 47.826 35.83 35.83 46.77 3.67
186 187 4.006532 GTGACGTCACTTGCACGA 57.993 55.556 35.51 1.62 43.25 4.35
187 188 2.517598 GTGACGTCACTTGCACGAT 58.482 52.632 35.51 0.00 43.25 3.73
188 189 0.161658 GTGACGTCACTTGCACGATG 59.838 55.000 35.51 0.00 43.25 3.84
189 190 0.031449 TGACGTCACTTGCACGATGA 59.969 50.000 15.76 0.00 39.75 2.92
190 191 0.435008 GACGTCACTTGCACGATGAC 59.565 55.000 11.55 12.20 39.75 3.06
191 192 0.944311 ACGTCACTTGCACGATGACC 60.944 55.000 15.16 2.72 39.70 4.02
192 193 0.667487 CGTCACTTGCACGATGACCT 60.667 55.000 15.16 0.00 39.70 3.85
193 194 1.071605 GTCACTTGCACGATGACCTC 58.928 55.000 11.45 0.00 37.39 3.85
194 195 0.037326 TCACTTGCACGATGACCTCC 60.037 55.000 0.00 0.00 0.00 4.30
195 196 1.021390 CACTTGCACGATGACCTCCC 61.021 60.000 0.00 0.00 0.00 4.30
196 197 1.811266 CTTGCACGATGACCTCCCG 60.811 63.158 0.00 0.00 0.00 5.14
197 198 2.507110 CTTGCACGATGACCTCCCGT 62.507 60.000 0.00 0.00 36.95 5.28
200 201 3.285371 ACGATGACCTCCCGTGAC 58.715 61.111 0.00 0.00 35.02 3.67
201 202 1.605451 ACGATGACCTCCCGTGACA 60.605 57.895 0.00 0.00 35.02 3.58
202 203 1.183030 ACGATGACCTCCCGTGACAA 61.183 55.000 0.00 0.00 35.02 3.18
203 204 0.736325 CGATGACCTCCCGTGACAAC 60.736 60.000 0.00 0.00 0.00 3.32
213 214 4.946411 GTGACAACGACGAGAGCT 57.054 55.556 0.00 0.00 0.00 4.09
214 215 2.714530 GTGACAACGACGAGAGCTC 58.285 57.895 5.27 5.27 0.00 4.09
215 216 0.238817 GTGACAACGACGAGAGCTCT 59.761 55.000 18.28 18.28 0.00 4.09
216 217 0.952280 TGACAACGACGAGAGCTCTT 59.048 50.000 19.36 1.78 0.00 2.85
217 218 1.332178 GACAACGACGAGAGCTCTTG 58.668 55.000 26.64 26.64 0.00 3.02
218 219 0.952280 ACAACGACGAGAGCTCTTGA 59.048 50.000 33.37 0.00 0.00 3.02
219 220 1.542030 ACAACGACGAGAGCTCTTGAT 59.458 47.619 33.37 19.19 0.00 2.57
220 221 2.181205 CAACGACGAGAGCTCTTGATC 58.819 52.381 33.37 24.05 0.00 2.92
221 222 1.745232 ACGACGAGAGCTCTTGATCT 58.255 50.000 33.37 14.52 42.22 2.75
222 223 2.088423 ACGACGAGAGCTCTTGATCTT 58.912 47.619 33.37 18.44 39.28 2.40
223 224 2.159448 ACGACGAGAGCTCTTGATCTTG 60.159 50.000 33.37 18.85 43.70 3.02
224 225 2.096657 CGACGAGAGCTCTTGATCTTGA 59.903 50.000 33.37 0.00 41.38 3.02
225 226 3.434637 GACGAGAGCTCTTGATCTTGAC 58.565 50.000 33.37 10.27 41.38 3.18
226 227 3.088532 ACGAGAGCTCTTGATCTTGACT 58.911 45.455 33.37 9.10 41.38 3.41
227 228 3.128589 ACGAGAGCTCTTGATCTTGACTC 59.871 47.826 33.37 9.29 41.38 3.36
228 229 3.378112 CGAGAGCTCTTGATCTTGACTCT 59.622 47.826 24.64 13.97 41.38 3.24
229 230 4.142403 CGAGAGCTCTTGATCTTGACTCTT 60.142 45.833 24.64 0.00 41.38 2.85
230 231 5.075858 AGAGCTCTTGATCTTGACTCTTG 57.924 43.478 11.45 0.00 35.05 3.02
231 232 4.771577 AGAGCTCTTGATCTTGACTCTTGA 59.228 41.667 11.45 0.00 35.05 3.02
232 233 5.075858 AGCTCTTGATCTTGACTCTTGAG 57.924 43.478 0.00 0.00 0.00 3.02
233 234 3.618150 GCTCTTGATCTTGACTCTTGAGC 59.382 47.826 0.00 0.00 37.76 4.26
234 235 3.842820 TCTTGATCTTGACTCTTGAGCG 58.157 45.455 0.00 0.00 0.00 5.03
235 236 2.001812 TGATCTTGACTCTTGAGCGC 57.998 50.000 0.00 0.00 0.00 5.92
236 237 1.547820 TGATCTTGACTCTTGAGCGCT 59.452 47.619 11.27 11.27 0.00 5.92
237 238 1.925847 GATCTTGACTCTTGAGCGCTG 59.074 52.381 18.48 1.17 0.00 5.18
238 239 0.961753 TCTTGACTCTTGAGCGCTGA 59.038 50.000 18.48 1.75 0.00 4.26
239 240 1.067985 TCTTGACTCTTGAGCGCTGAG 60.068 52.381 18.48 18.64 0.00 3.35
240 241 0.961753 TTGACTCTTGAGCGCTGAGA 59.038 50.000 25.10 20.78 0.00 3.27
241 242 1.180907 TGACTCTTGAGCGCTGAGAT 58.819 50.000 25.10 12.32 0.00 2.75
242 243 1.133982 TGACTCTTGAGCGCTGAGATC 59.866 52.381 25.10 18.60 35.45 2.75
243 244 1.133982 GACTCTTGAGCGCTGAGATCA 59.866 52.381 25.10 10.88 44.44 2.92
248 249 2.391616 TGAGCGCTGAGATCAATGTT 57.608 45.000 18.48 0.00 43.00 2.71
249 250 2.274437 TGAGCGCTGAGATCAATGTTC 58.726 47.619 18.48 0.00 43.00 3.18
250 251 2.274437 GAGCGCTGAGATCAATGTTCA 58.726 47.619 18.48 0.00 34.89 3.18
251 252 2.871022 GAGCGCTGAGATCAATGTTCAT 59.129 45.455 18.48 0.00 34.89 2.57
252 253 2.871022 AGCGCTGAGATCAATGTTCATC 59.129 45.455 10.39 0.00 0.00 2.92
253 254 2.032204 GCGCTGAGATCAATGTTCATCC 60.032 50.000 0.00 0.00 0.00 3.51
254 255 3.464907 CGCTGAGATCAATGTTCATCCT 58.535 45.455 0.00 0.00 0.00 3.24
255 256 3.875727 CGCTGAGATCAATGTTCATCCTT 59.124 43.478 0.00 0.00 0.00 3.36
256 257 4.334759 CGCTGAGATCAATGTTCATCCTTT 59.665 41.667 0.00 0.00 0.00 3.11
257 258 5.503683 CGCTGAGATCAATGTTCATCCTTTC 60.504 44.000 0.00 0.00 0.00 2.62
258 259 5.589452 GCTGAGATCAATGTTCATCCTTTCT 59.411 40.000 0.00 0.00 0.00 2.52
274 275 0.950555 TTCTCTCGCGTTGCAGCATT 60.951 50.000 5.77 0.00 36.85 3.56
303 304 2.561419 TGGGAACACGTGAAAACCAAAA 59.439 40.909 25.01 6.44 33.40 2.44
305 306 2.601314 GGAACACGTGAAAACCAAAAGC 59.399 45.455 25.01 0.00 0.00 3.51
354 359 1.226030 CGCTCCCGGAACTTTCGTTT 61.226 55.000 0.73 0.00 32.39 3.60
355 360 0.237498 GCTCCCGGAACTTTCGTTTG 59.763 55.000 0.73 0.00 32.39 2.93
356 361 1.589803 CTCCCGGAACTTTCGTTTGT 58.410 50.000 0.73 0.00 32.39 2.83
359 364 1.263217 CCCGGAACTTTCGTTTGTCTG 59.737 52.381 0.73 0.00 32.39 3.51
360 365 2.206750 CCGGAACTTTCGTTTGTCTGA 58.793 47.619 0.00 0.00 32.39 3.27
361 366 2.033151 CCGGAACTTTCGTTTGTCTGAC 60.033 50.000 0.00 0.00 32.39 3.51
362 367 2.347292 CGGAACTTTCGTTTGTCTGACG 60.347 50.000 2.98 0.00 41.62 4.35
364 369 0.935196 ACTTTCGTTTGTCTGACGGC 59.065 50.000 2.98 0.00 40.70 5.68
365 370 1.217882 CTTTCGTTTGTCTGACGGCT 58.782 50.000 2.98 0.00 40.70 5.52
366 371 0.934496 TTTCGTTTGTCTGACGGCTG 59.066 50.000 2.98 0.00 40.70 4.85
367 372 0.103390 TTCGTTTGTCTGACGGCTGA 59.897 50.000 0.00 0.00 40.70 4.26
368 373 0.596600 TCGTTTGTCTGACGGCTGAC 60.597 55.000 20.48 20.48 41.68 3.51
404 430 0.030369 GCCGGTCGTCAGATTCGTAT 59.970 55.000 1.90 0.00 0.00 3.06
418 444 0.246910 TCGTATGTGCGGCCACTTTA 59.753 50.000 2.24 0.00 42.54 1.85
419 445 0.372334 CGTATGTGCGGCCACTTTAC 59.628 55.000 2.24 0.67 42.54 2.01
420 446 1.734163 GTATGTGCGGCCACTTTACT 58.266 50.000 2.24 0.00 42.54 2.24
421 447 2.081462 GTATGTGCGGCCACTTTACTT 58.919 47.619 2.24 0.00 42.54 2.24
422 448 2.483014 ATGTGCGGCCACTTTACTTA 57.517 45.000 2.24 0.00 42.54 2.24
423 449 1.515081 TGTGCGGCCACTTTACTTAC 58.485 50.000 2.24 0.00 42.54 2.34
424 450 0.441145 GTGCGGCCACTTTACTTACG 59.559 55.000 2.24 0.00 38.93 3.18
425 451 0.671163 TGCGGCCACTTTACTTACGG 60.671 55.000 2.24 0.00 0.00 4.02
426 452 0.671472 GCGGCCACTTTACTTACGGT 60.671 55.000 2.24 0.00 0.00 4.83
427 453 1.353076 CGGCCACTTTACTTACGGTC 58.647 55.000 2.24 0.00 0.00 4.79
428 454 1.353076 GGCCACTTTACTTACGGTCG 58.647 55.000 0.00 0.00 0.00 4.79
429 455 1.353076 GCCACTTTACTTACGGTCGG 58.647 55.000 0.00 0.00 0.00 4.79
430 456 2.000429 CCACTTTACTTACGGTCGGG 58.000 55.000 0.00 0.00 0.00 5.14
431 457 1.545582 CCACTTTACTTACGGTCGGGA 59.454 52.381 0.00 0.00 0.00 5.14
432 458 2.599659 CACTTTACTTACGGTCGGGAC 58.400 52.381 0.00 0.00 0.00 4.46
463 489 3.896648 TGCCATCTTCACGAAAAGAAC 57.103 42.857 8.01 3.33 38.69 3.01
466 492 3.146066 CCATCTTCACGAAAAGAACCCA 58.854 45.455 8.01 0.00 38.69 4.51
514 541 0.812014 TTCTTCGCAAGCAACGGACA 60.812 50.000 0.00 0.00 37.18 4.02
523 550 3.119849 GCAAGCAACGGACAGAACATAAT 60.120 43.478 0.00 0.00 0.00 1.28
552 579 3.814268 CATGTTTGCTCGCCCCCG 61.814 66.667 0.00 0.00 0.00 5.73
575 786 1.077089 GCGAGACTAGCCGGAAACAC 61.077 60.000 5.05 0.00 0.00 3.32
586 797 3.139029 GGAAACACCGTCTGCTAGG 57.861 57.895 0.00 0.00 0.00 3.02
587 798 0.320697 GGAAACACCGTCTGCTAGGT 59.679 55.000 0.00 0.00 42.34 3.08
588 799 1.547372 GGAAACACCGTCTGCTAGGTA 59.453 52.381 0.00 0.00 39.00 3.08
589 800 2.416972 GGAAACACCGTCTGCTAGGTAG 60.417 54.545 0.00 0.00 39.00 3.18
590 801 1.183549 AACACCGTCTGCTAGGTAGG 58.816 55.000 0.00 0.00 39.00 3.18
591 802 0.039326 ACACCGTCTGCTAGGTAGGT 59.961 55.000 0.00 0.00 39.00 3.08
592 803 0.739561 CACCGTCTGCTAGGTAGGTC 59.260 60.000 0.00 0.00 39.00 3.85
593 804 0.624785 ACCGTCTGCTAGGTAGGTCT 59.375 55.000 0.00 0.00 39.30 3.85
594 805 1.005687 ACCGTCTGCTAGGTAGGTCTT 59.994 52.381 0.00 0.00 39.30 3.01
595 806 1.405821 CCGTCTGCTAGGTAGGTCTTG 59.594 57.143 0.00 0.00 0.00 3.02
596 807 1.202313 CGTCTGCTAGGTAGGTCTTGC 60.202 57.143 0.00 0.00 36.36 4.01
597 808 1.103803 TCTGCTAGGTAGGTCTTGCG 58.896 55.000 0.00 0.00 38.11 4.85
598 809 0.818296 CTGCTAGGTAGGTCTTGCGT 59.182 55.000 0.00 0.00 38.11 5.24
599 810 0.815734 TGCTAGGTAGGTCTTGCGTC 59.184 55.000 0.00 0.00 38.11 5.19
600 811 1.104630 GCTAGGTAGGTCTTGCGTCT 58.895 55.000 0.00 0.00 0.00 4.18
601 812 1.477295 GCTAGGTAGGTCTTGCGTCTT 59.523 52.381 0.00 0.00 0.00 3.01
602 813 2.735762 GCTAGGTAGGTCTTGCGTCTTG 60.736 54.545 0.00 0.00 0.00 3.02
603 814 1.339097 AGGTAGGTCTTGCGTCTTGT 58.661 50.000 0.00 0.00 0.00 3.16
604 815 1.000955 AGGTAGGTCTTGCGTCTTGTG 59.999 52.381 0.00 0.00 0.00 3.33
605 816 1.270147 GGTAGGTCTTGCGTCTTGTGT 60.270 52.381 0.00 0.00 0.00 3.72
606 817 2.059541 GTAGGTCTTGCGTCTTGTGTC 58.940 52.381 0.00 0.00 0.00 3.67
607 818 0.753262 AGGTCTTGCGTCTTGTGTCT 59.247 50.000 0.00 0.00 0.00 3.41
608 819 1.140816 GGTCTTGCGTCTTGTGTCTC 58.859 55.000 0.00 0.00 0.00 3.36
609 820 1.538204 GGTCTTGCGTCTTGTGTCTCA 60.538 52.381 0.00 0.00 0.00 3.27
610 821 2.201732 GTCTTGCGTCTTGTGTCTCAA 58.798 47.619 0.00 0.00 34.61 3.02
611 822 2.607635 GTCTTGCGTCTTGTGTCTCAAA 59.392 45.455 0.00 0.00 35.48 2.69
612 823 3.063452 GTCTTGCGTCTTGTGTCTCAAAA 59.937 43.478 0.00 0.00 35.48 2.44
613 824 3.687212 TCTTGCGTCTTGTGTCTCAAAAA 59.313 39.130 0.00 0.00 35.48 1.94
645 856 1.154035 CGTCTTGATTTTGCCGGCC 60.154 57.895 26.77 8.57 0.00 6.13
657 868 1.118356 TGCCGGCCAACAAGGAAAAT 61.118 50.000 26.77 0.00 41.22 1.82
658 869 0.034756 GCCGGCCAACAAGGAAAATT 59.965 50.000 18.11 0.00 41.22 1.82
667 878 5.402398 CCAACAAGGAAAATTCTCGATTCC 58.598 41.667 6.63 6.63 42.38 3.01
669 880 6.446318 CAACAAGGAAAATTCTCGATTCCAA 58.554 36.000 15.30 0.00 44.08 3.53
780 997 3.521937 CCCTTTCCACCTTACACATCCTA 59.478 47.826 0.00 0.00 0.00 2.94
786 1003 2.427453 CACCTTACACATCCTACGAGCT 59.573 50.000 0.00 0.00 0.00 4.09
787 1004 2.688958 ACCTTACACATCCTACGAGCTC 59.311 50.000 2.73 2.73 0.00 4.09
788 1005 2.287069 CCTTACACATCCTACGAGCTCG 60.287 54.545 33.45 33.45 46.33 5.03
789 1006 2.320745 TACACATCCTACGAGCTCGA 57.679 50.000 40.58 22.94 43.02 4.04
841 1071 1.008875 CGACTCATCACCACACCACG 61.009 60.000 0.00 0.00 0.00 4.94
861 1091 5.452776 CCACGCCACCTCTATAAATACTCAA 60.453 44.000 0.00 0.00 0.00 3.02
873 1103 2.680312 ATACTCAAGCTCGCACACAT 57.320 45.000 0.00 0.00 0.00 3.21
875 1105 1.151668 ACTCAAGCTCGCACACATTC 58.848 50.000 0.00 0.00 0.00 2.67
876 1106 1.150827 CTCAAGCTCGCACACATTCA 58.849 50.000 0.00 0.00 0.00 2.57
878 1108 0.451628 CAAGCTCGCACACATTCACG 60.452 55.000 0.00 0.00 0.00 4.35
879 1109 2.175184 AAGCTCGCACACATTCACGC 62.175 55.000 0.00 0.00 0.00 5.34
888 1118 2.092291 ACATTCACGCGCACTACCG 61.092 57.895 5.73 0.00 0.00 4.02
907 1137 2.330041 CCAAACCACCGTCGCAAC 59.670 61.111 0.00 0.00 0.00 4.17
956 1186 3.133721 AGTTGACTTCTGCAGAGTTCAGT 59.866 43.478 21.84 19.62 33.48 3.41
957 1187 3.377346 TGACTTCTGCAGAGTTCAGTC 57.623 47.619 28.07 28.07 33.48 3.51
958 1188 2.695147 TGACTTCTGCAGAGTTCAGTCA 59.305 45.455 31.34 31.34 38.61 3.41
959 1189 3.132824 TGACTTCTGCAGAGTTCAGTCAA 59.867 43.478 32.24 21.43 38.12 3.18
988 1218 0.533308 TACACCAACGCCACCTTCAC 60.533 55.000 0.00 0.00 0.00 3.18
1289 1532 7.042523 CGTAGACATGTGCATGAAGATGATTAA 60.043 37.037 17.54 0.00 41.20 1.40
1291 1534 8.234136 AGACATGTGCATGAAGATGATTAATT 57.766 30.769 17.54 0.00 41.20 1.40
1334 1577 5.980116 GTCATGCGAATTGTAGATAGAGTGT 59.020 40.000 0.00 0.00 0.00 3.55
1335 1578 5.979517 TCATGCGAATTGTAGATAGAGTGTG 59.020 40.000 0.00 0.00 0.00 3.82
1387 1634 9.379791 CCTTTTCTCGTTGGAAGTTATTACTAT 57.620 33.333 0.00 0.00 33.17 2.12
1393 1640 9.379791 CTCGTTGGAAGTTATTACTATTTCCTT 57.620 33.333 3.46 0.00 32.34 3.36
1394 1641 9.158233 TCGTTGGAAGTTATTACTATTTCCTTG 57.842 33.333 3.46 0.00 32.34 3.61
1413 1660 7.675161 TCCTTGGTCTCACAATATAAGATCA 57.325 36.000 0.00 0.00 0.00 2.92
1533 1780 6.213195 AGGGTGAATTTTATTGGCTCAAATGA 59.787 34.615 0.00 0.00 0.00 2.57
1565 1812 9.373750 CAAAAAGATATAATATGAGCACACACG 57.626 33.333 0.00 0.00 0.00 4.49
1567 1814 5.171476 AGATATAATATGAGCACACACGCC 58.829 41.667 0.00 0.00 0.00 5.68
1568 1815 1.948104 TAATATGAGCACACACGCCC 58.052 50.000 0.00 0.00 0.00 6.13
1569 1816 0.035534 AATATGAGCACACACGCCCA 60.036 50.000 0.00 0.00 0.00 5.36
1583 1830 0.035317 CGCCCAGCCTCTGCATAATA 59.965 55.000 0.00 0.00 41.13 0.98
1589 1836 4.008330 CCAGCCTCTGCATAATAAGGATG 58.992 47.826 9.29 9.29 43.32 3.51
1603 1850 3.762293 GATGCACACAGCCAACCA 58.238 55.556 0.00 0.00 44.83 3.67
1620 1869 2.966050 ACCAAACACACACGCAAAAAT 58.034 38.095 0.00 0.00 0.00 1.82
1622 1871 4.688021 ACCAAACACACACGCAAAAATAT 58.312 34.783 0.00 0.00 0.00 1.28
1624 1873 4.444468 CAAACACACACGCAAAAATATGC 58.556 39.130 0.00 0.00 42.94 3.14
1698 1947 7.701539 AAAAAGGAAAAAGCTCCAAAACAAT 57.298 28.000 0.00 0.00 38.02 2.71
1711 1973 7.548075 AGCTCCAAAACAATGAAATCATCAATC 59.452 33.333 0.00 0.00 42.54 2.67
1773 2035 3.135348 ACATCACATGGAGGTCGATGATT 59.865 43.478 8.76 0.00 35.09 2.57
1928 2194 3.497031 GCTAGGTTTCCCGCGTGC 61.497 66.667 4.92 0.00 35.12 5.34
1969 2236 3.654143 TCGGGTCGGAGGAGGTCA 61.654 66.667 0.00 0.00 0.00 4.02
2137 4427 6.042777 TGAGACGCCTTATATTTTGAGACAG 58.957 40.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.883142 AGTCAAGTTCAAACAAATTGGAAAATA 57.117 25.926 0.00 0.00 39.62 1.40
2 3 8.791327 AGTCAAGTTCAAACAAATTGGAAAAT 57.209 26.923 0.00 0.00 39.62 1.82
3 4 8.502387 CAAGTCAAGTTCAAACAAATTGGAAAA 58.498 29.630 0.00 0.00 39.62 2.29
4 5 7.360776 GCAAGTCAAGTTCAAACAAATTGGAAA 60.361 33.333 0.00 0.00 39.62 3.13
5 6 6.091986 GCAAGTCAAGTTCAAACAAATTGGAA 59.908 34.615 0.00 0.00 39.62 3.53
6 7 5.580297 GCAAGTCAAGTTCAAACAAATTGGA 59.420 36.000 0.00 0.00 39.62 3.53
7 8 5.581874 AGCAAGTCAAGTTCAAACAAATTGG 59.418 36.000 0.00 0.00 39.62 3.16
8 9 6.310956 TGAGCAAGTCAAGTTCAAACAAATTG 59.689 34.615 0.00 0.00 34.44 2.32
9 10 6.397272 TGAGCAAGTCAAGTTCAAACAAATT 58.603 32.000 0.00 0.00 29.64 1.82
10 11 5.964758 TGAGCAAGTCAAGTTCAAACAAAT 58.035 33.333 0.00 0.00 29.64 2.32
11 12 5.384063 TGAGCAAGTCAAGTTCAAACAAA 57.616 34.783 0.00 0.00 29.64 2.83
12 13 5.384063 TTGAGCAAGTCAAGTTCAAACAA 57.616 34.783 0.00 0.00 40.45 2.83
22 23 2.627515 AGACAGCTTGAGCAAGTCAA 57.372 45.000 22.04 0.00 44.92 3.18
23 24 2.630098 ACTAGACAGCTTGAGCAAGTCA 59.370 45.455 22.04 12.21 44.92 3.41
24 25 3.311486 ACTAGACAGCTTGAGCAAGTC 57.689 47.619 16.09 16.09 45.16 3.01
25 26 3.397482 CAACTAGACAGCTTGAGCAAGT 58.603 45.455 11.47 3.40 45.16 3.16
26 27 2.159234 GCAACTAGACAGCTTGAGCAAG 59.841 50.000 5.70 5.88 45.16 4.01
27 28 2.146342 GCAACTAGACAGCTTGAGCAA 58.854 47.619 5.70 0.00 45.16 3.91
28 29 1.070601 TGCAACTAGACAGCTTGAGCA 59.929 47.619 5.70 0.00 45.16 4.26
29 30 1.800805 TGCAACTAGACAGCTTGAGC 58.199 50.000 0.00 0.00 42.49 4.26
30 31 5.063186 CAGTTATGCAACTAGACAGCTTGAG 59.937 44.000 0.00 0.00 43.30 3.02
31 32 4.931601 CAGTTATGCAACTAGACAGCTTGA 59.068 41.667 0.00 0.00 43.30 3.02
32 33 4.931601 TCAGTTATGCAACTAGACAGCTTG 59.068 41.667 0.00 0.00 43.30 4.01
33 34 4.932200 GTCAGTTATGCAACTAGACAGCTT 59.068 41.667 0.00 0.00 43.30 3.74
34 35 4.021104 TGTCAGTTATGCAACTAGACAGCT 60.021 41.667 14.49 0.00 43.30 4.24
35 36 4.245660 TGTCAGTTATGCAACTAGACAGC 58.754 43.478 14.49 0.00 43.30 4.40
36 37 6.815641 AGATTGTCAGTTATGCAACTAGACAG 59.184 38.462 16.33 1.51 44.34 3.51
37 38 6.701340 AGATTGTCAGTTATGCAACTAGACA 58.299 36.000 14.49 14.49 43.30 3.41
38 39 6.813649 TGAGATTGTCAGTTATGCAACTAGAC 59.186 38.462 0.00 2.61 43.30 2.59
39 40 6.935167 TGAGATTGTCAGTTATGCAACTAGA 58.065 36.000 0.00 0.00 43.30 2.43
40 41 7.601073 TTGAGATTGTCAGTTATGCAACTAG 57.399 36.000 0.00 0.00 43.30 2.57
41 42 7.977789 TTTGAGATTGTCAGTTATGCAACTA 57.022 32.000 0.00 0.00 43.30 2.24
42 43 6.882610 TTTGAGATTGTCAGTTATGCAACT 57.117 33.333 0.00 0.00 46.15 3.16
43 44 7.362662 TCTTTTGAGATTGTCAGTTATGCAAC 58.637 34.615 0.00 0.00 36.21 4.17
44 45 7.509141 TCTTTTGAGATTGTCAGTTATGCAA 57.491 32.000 0.00 0.00 36.21 4.08
45 46 7.509141 TTCTTTTGAGATTGTCAGTTATGCA 57.491 32.000 0.00 0.00 36.21 3.96
46 47 8.025445 ACATTCTTTTGAGATTGTCAGTTATGC 58.975 33.333 0.00 0.00 36.21 3.14
47 48 9.903682 AACATTCTTTTGAGATTGTCAGTTATG 57.096 29.630 4.91 0.00 36.21 1.90
49 50 9.950680 GAAACATTCTTTTGAGATTGTCAGTTA 57.049 29.630 4.91 0.00 36.21 2.24
50 51 8.469200 TGAAACATTCTTTTGAGATTGTCAGTT 58.531 29.630 4.91 0.00 36.21 3.16
51 52 7.999679 TGAAACATTCTTTTGAGATTGTCAGT 58.000 30.769 4.91 0.00 36.21 3.41
52 53 8.347771 TCTGAAACATTCTTTTGAGATTGTCAG 58.652 33.333 4.91 8.24 36.21 3.51
53 54 8.224389 TCTGAAACATTCTTTTGAGATTGTCA 57.776 30.769 4.91 0.95 33.08 3.58
54 55 9.688592 ATTCTGAAACATTCTTTTGAGATTGTC 57.311 29.630 0.00 0.00 30.16 3.18
88 89 7.939782 TGAGATAGCAATCAACAACTCAAAAA 58.060 30.769 0.00 0.00 34.28 1.94
89 90 7.509141 TGAGATAGCAATCAACAACTCAAAA 57.491 32.000 0.00 0.00 34.28 2.44
90 91 7.509141 TTGAGATAGCAATCAACAACTCAAA 57.491 32.000 0.00 0.00 39.19 2.69
91 92 7.509141 TTTGAGATAGCAATCAACAACTCAA 57.491 32.000 0.00 0.00 39.97 3.02
92 93 7.509141 TTTTGAGATAGCAATCAACAACTCA 57.491 32.000 0.00 0.00 35.25 3.41
93 94 7.862372 TGTTTTTGAGATAGCAATCAACAACTC 59.138 33.333 14.42 0.00 42.46 3.01
94 95 7.715657 TGTTTTTGAGATAGCAATCAACAACT 58.284 30.769 14.42 0.00 42.46 3.16
95 96 7.928908 TGTTTTTGAGATAGCAATCAACAAC 57.071 32.000 9.04 9.04 42.38 3.32
96 97 9.195411 GATTGTTTTTGAGATAGCAATCAACAA 57.805 29.630 0.99 0.99 41.03 2.83
97 98 8.358895 TGATTGTTTTTGAGATAGCAATCAACA 58.641 29.630 13.22 0.00 44.82 3.33
98 99 8.746922 TGATTGTTTTTGAGATAGCAATCAAC 57.253 30.769 13.22 0.00 44.82 3.18
100 101 8.358895 TGTTGATTGTTTTTGAGATAGCAATCA 58.641 29.630 12.02 12.02 45.56 2.57
101 102 8.746922 TGTTGATTGTTTTTGAGATAGCAATC 57.253 30.769 0.00 0.00 41.20 2.67
102 103 8.981647 GTTGTTGATTGTTTTTGAGATAGCAAT 58.018 29.630 0.00 0.00 0.00 3.56
103 104 8.196771 AGTTGTTGATTGTTTTTGAGATAGCAA 58.803 29.630 0.00 0.00 0.00 3.91
104 105 7.715657 AGTTGTTGATTGTTTTTGAGATAGCA 58.284 30.769 0.00 0.00 0.00 3.49
105 106 7.862372 TGAGTTGTTGATTGTTTTTGAGATAGC 59.138 33.333 0.00 0.00 0.00 2.97
106 107 9.734620 TTGAGTTGTTGATTGTTTTTGAGATAG 57.265 29.630 0.00 0.00 0.00 2.08
108 109 9.434420 TTTTGAGTTGTTGATTGTTTTTGAGAT 57.566 25.926 0.00 0.00 0.00 2.75
109 110 8.824159 TTTTGAGTTGTTGATTGTTTTTGAGA 57.176 26.923 0.00 0.00 0.00 3.27
138 139 1.530655 CCCGGCAGGAGGTGTTTTT 60.531 57.895 3.68 0.00 41.02 1.94
139 140 2.115266 CCCGGCAGGAGGTGTTTT 59.885 61.111 3.68 0.00 41.02 2.43
140 141 3.175710 ACCCGGCAGGAGGTGTTT 61.176 61.111 3.68 0.00 41.02 2.83
141 142 3.637273 GACCCGGCAGGAGGTGTT 61.637 66.667 3.68 0.00 41.02 3.32
144 145 2.866523 TATTCGACCCGGCAGGAGGT 62.867 60.000 3.68 0.00 41.02 3.85
145 146 1.472662 ATATTCGACCCGGCAGGAGG 61.473 60.000 3.68 0.00 41.02 4.30
146 147 0.319900 CATATTCGACCCGGCAGGAG 60.320 60.000 3.68 0.00 41.02 3.69
147 148 1.046472 ACATATTCGACCCGGCAGGA 61.046 55.000 3.68 0.00 41.02 3.86
148 149 0.600255 GACATATTCGACCCGGCAGG 60.600 60.000 0.00 0.00 43.78 4.85
149 150 0.104120 TGACATATTCGACCCGGCAG 59.896 55.000 0.00 0.00 0.00 4.85
150 151 0.104120 CTGACATATTCGACCCGGCA 59.896 55.000 0.00 0.00 0.00 5.69
151 152 0.104304 ACTGACATATTCGACCCGGC 59.896 55.000 0.00 0.00 0.00 6.13
152 153 1.407618 TCACTGACATATTCGACCCGG 59.592 52.381 0.00 0.00 0.00 5.73
153 154 2.460918 GTCACTGACATATTCGACCCG 58.539 52.381 4.17 0.00 32.09 5.28
154 155 2.159282 ACGTCACTGACATATTCGACCC 60.159 50.000 9.84 0.00 32.09 4.46
155 156 3.106672 GACGTCACTGACATATTCGACC 58.893 50.000 11.55 0.00 32.09 4.79
156 157 3.542704 GTGACGTCACTGACATATTCGAC 59.457 47.826 35.51 9.16 43.25 4.20
157 158 3.754955 GTGACGTCACTGACATATTCGA 58.245 45.455 35.51 0.00 43.25 3.71
169 170 0.161658 CATCGTGCAAGTGACGTCAC 59.838 55.000 35.83 35.83 46.77 3.67
170 171 0.031449 TCATCGTGCAAGTGACGTCA 59.969 50.000 15.76 15.76 38.04 4.35
171 172 0.435008 GTCATCGTGCAAGTGACGTC 59.565 55.000 9.11 9.11 38.04 4.34
172 173 0.944311 GGTCATCGTGCAAGTGACGT 60.944 55.000 20.01 0.00 42.34 4.34
173 174 0.667487 AGGTCATCGTGCAAGTGACG 60.667 55.000 20.01 7.94 42.34 4.35
174 175 1.071605 GAGGTCATCGTGCAAGTGAC 58.928 55.000 19.21 19.21 41.07 3.67
175 176 0.037326 GGAGGTCATCGTGCAAGTGA 60.037 55.000 0.00 0.42 0.00 3.41
176 177 1.021390 GGGAGGTCATCGTGCAAGTG 61.021 60.000 0.00 0.00 0.00 3.16
177 178 1.296715 GGGAGGTCATCGTGCAAGT 59.703 57.895 0.00 0.00 0.00 3.16
178 179 1.811266 CGGGAGGTCATCGTGCAAG 60.811 63.158 0.00 0.00 0.00 4.01
179 180 2.264480 CGGGAGGTCATCGTGCAA 59.736 61.111 0.00 0.00 0.00 4.08
180 181 2.994995 ACGGGAGGTCATCGTGCA 60.995 61.111 0.00 0.00 35.70 4.57
181 182 2.509336 CACGGGAGGTCATCGTGC 60.509 66.667 10.61 0.00 45.56 5.34
183 184 1.183030 TTGTCACGGGAGGTCATCGT 61.183 55.000 0.00 0.00 37.64 3.73
184 185 0.736325 GTTGTCACGGGAGGTCATCG 60.736 60.000 0.00 0.00 0.00 3.84
185 186 0.736325 CGTTGTCACGGGAGGTCATC 60.736 60.000 0.00 0.00 43.16 2.92
186 187 1.292223 CGTTGTCACGGGAGGTCAT 59.708 57.895 0.00 0.00 43.16 3.06
187 188 2.732016 CGTTGTCACGGGAGGTCA 59.268 61.111 0.00 0.00 43.16 4.02
191 192 1.848932 TCTCGTCGTTGTCACGGGAG 61.849 60.000 0.00 9.19 41.84 4.30
192 193 1.848932 CTCTCGTCGTTGTCACGGGA 61.849 60.000 0.00 0.00 44.48 5.14
195 196 3.374305 AGAGCTCTCGTCGTTGTCACG 62.374 57.143 11.45 0.00 40.29 4.35
196 197 0.238817 AGAGCTCTCGTCGTTGTCAC 59.761 55.000 11.45 0.00 34.09 3.67
197 198 0.952280 AAGAGCTCTCGTCGTTGTCA 59.048 50.000 18.55 0.00 34.09 3.58
198 199 1.069159 TCAAGAGCTCTCGTCGTTGTC 60.069 52.381 18.55 0.00 34.09 3.18
199 200 0.952280 TCAAGAGCTCTCGTCGTTGT 59.048 50.000 18.55 0.00 34.09 3.32
200 201 2.159448 AGATCAAGAGCTCTCGTCGTTG 60.159 50.000 18.55 10.67 34.09 4.10
201 202 2.088423 AGATCAAGAGCTCTCGTCGTT 58.912 47.619 18.55 0.00 34.09 3.85
202 203 1.745232 AGATCAAGAGCTCTCGTCGT 58.255 50.000 18.55 0.00 34.09 4.34
203 204 2.096657 TCAAGATCAAGAGCTCTCGTCG 59.903 50.000 18.55 6.39 34.09 5.12
204 205 3.128589 AGTCAAGATCAAGAGCTCTCGTC 59.871 47.826 18.55 14.83 34.09 4.20
205 206 3.088532 AGTCAAGATCAAGAGCTCTCGT 58.911 45.455 18.55 5.91 34.09 4.18
206 207 3.378112 AGAGTCAAGATCAAGAGCTCTCG 59.622 47.826 18.55 5.86 34.09 4.04
207 208 4.989279 AGAGTCAAGATCAAGAGCTCTC 57.011 45.455 18.55 4.45 0.00 3.20
208 209 4.771577 TCAAGAGTCAAGATCAAGAGCTCT 59.228 41.667 11.45 11.45 33.83 4.09
209 210 5.070770 TCAAGAGTCAAGATCAAGAGCTC 57.929 43.478 5.27 5.27 0.00 4.09
210 211 4.621274 GCTCAAGAGTCAAGATCAAGAGCT 60.621 45.833 0.00 0.00 40.11 4.09
211 212 3.618150 GCTCAAGAGTCAAGATCAAGAGC 59.382 47.826 0.00 0.00 38.09 4.09
212 213 3.858812 CGCTCAAGAGTCAAGATCAAGAG 59.141 47.826 0.00 0.00 0.00 2.85
213 214 3.842820 CGCTCAAGAGTCAAGATCAAGA 58.157 45.455 0.00 0.00 0.00 3.02
214 215 2.348059 GCGCTCAAGAGTCAAGATCAAG 59.652 50.000 0.00 0.00 0.00 3.02
215 216 2.028658 AGCGCTCAAGAGTCAAGATCAA 60.029 45.455 2.64 0.00 0.00 2.57
216 217 1.547820 AGCGCTCAAGAGTCAAGATCA 59.452 47.619 2.64 0.00 0.00 2.92
217 218 1.925847 CAGCGCTCAAGAGTCAAGATC 59.074 52.381 7.13 0.00 0.00 2.75
218 219 1.547820 TCAGCGCTCAAGAGTCAAGAT 59.452 47.619 7.13 0.00 0.00 2.40
219 220 0.961753 TCAGCGCTCAAGAGTCAAGA 59.038 50.000 7.13 0.00 0.00 3.02
220 221 1.067985 TCTCAGCGCTCAAGAGTCAAG 60.068 52.381 19.28 0.86 0.00 3.02
221 222 0.961753 TCTCAGCGCTCAAGAGTCAA 59.038 50.000 19.28 1.96 0.00 3.18
222 223 1.133982 GATCTCAGCGCTCAAGAGTCA 59.866 52.381 20.29 6.23 0.00 3.41
223 224 1.133982 TGATCTCAGCGCTCAAGAGTC 59.866 52.381 20.29 16.64 0.00 3.36
224 225 1.180907 TGATCTCAGCGCTCAAGAGT 58.819 50.000 20.29 10.29 0.00 3.24
225 226 2.290531 TTGATCTCAGCGCTCAAGAG 57.709 50.000 20.29 17.93 0.00 2.85
226 227 2.093816 ACATTGATCTCAGCGCTCAAGA 60.094 45.455 18.55 18.55 32.82 3.02
227 228 2.277969 ACATTGATCTCAGCGCTCAAG 58.722 47.619 7.13 8.70 32.82 3.02
228 229 2.391616 ACATTGATCTCAGCGCTCAA 57.608 45.000 7.13 9.54 33.75 3.02
229 230 2.274437 GAACATTGATCTCAGCGCTCA 58.726 47.619 7.13 0.00 0.00 4.26
230 231 2.274437 TGAACATTGATCTCAGCGCTC 58.726 47.619 7.13 0.00 0.00 5.03
231 232 2.391616 TGAACATTGATCTCAGCGCT 57.608 45.000 2.64 2.64 0.00 5.92
232 233 2.032204 GGATGAACATTGATCTCAGCGC 60.032 50.000 0.00 0.00 0.00 5.92
233 234 3.464907 AGGATGAACATTGATCTCAGCG 58.535 45.455 0.00 0.00 0.00 5.18
234 235 5.589452 AGAAAGGATGAACATTGATCTCAGC 59.411 40.000 0.00 0.00 0.00 4.26
235 236 7.049133 AGAGAAAGGATGAACATTGATCTCAG 58.951 38.462 15.65 0.00 34.64 3.35
236 237 6.955364 AGAGAAAGGATGAACATTGATCTCA 58.045 36.000 15.65 0.00 34.64 3.27
237 238 6.200665 CGAGAGAAAGGATGAACATTGATCTC 59.799 42.308 0.00 0.00 34.41 2.75
238 239 6.047870 CGAGAGAAAGGATGAACATTGATCT 58.952 40.000 0.00 0.00 0.00 2.75
239 240 5.277250 GCGAGAGAAAGGATGAACATTGATC 60.277 44.000 0.00 0.00 0.00 2.92
240 241 4.574013 GCGAGAGAAAGGATGAACATTGAT 59.426 41.667 0.00 0.00 0.00 2.57
241 242 3.935203 GCGAGAGAAAGGATGAACATTGA 59.065 43.478 0.00 0.00 0.00 2.57
242 243 3.242220 CGCGAGAGAAAGGATGAACATTG 60.242 47.826 0.00 0.00 0.00 2.82
243 244 2.932614 CGCGAGAGAAAGGATGAACATT 59.067 45.455 0.00 0.00 0.00 2.71
244 245 2.093973 ACGCGAGAGAAAGGATGAACAT 60.094 45.455 15.93 0.00 0.00 2.71
245 246 1.272490 ACGCGAGAGAAAGGATGAACA 59.728 47.619 15.93 0.00 0.00 3.18
246 247 1.997669 ACGCGAGAGAAAGGATGAAC 58.002 50.000 15.93 0.00 0.00 3.18
247 248 2.337583 CAACGCGAGAGAAAGGATGAA 58.662 47.619 15.93 0.00 0.00 2.57
248 249 1.996292 CAACGCGAGAGAAAGGATGA 58.004 50.000 15.93 0.00 0.00 2.92
249 250 0.371645 GCAACGCGAGAGAAAGGATG 59.628 55.000 15.93 0.00 0.00 3.51
250 251 0.037326 TGCAACGCGAGAGAAAGGAT 60.037 50.000 15.93 0.00 0.00 3.24
251 252 0.667487 CTGCAACGCGAGAGAAAGGA 60.667 55.000 15.93 0.00 0.00 3.36
252 253 1.784062 CTGCAACGCGAGAGAAAGG 59.216 57.895 15.93 0.00 0.00 3.11
253 254 1.131420 GCTGCAACGCGAGAGAAAG 59.869 57.895 15.93 3.38 0.00 2.62
254 255 0.950555 ATGCTGCAACGCGAGAGAAA 60.951 50.000 15.93 0.00 0.00 2.52
255 256 0.950555 AATGCTGCAACGCGAGAGAA 60.951 50.000 15.93 0.00 0.00 2.87
256 257 0.950555 AAATGCTGCAACGCGAGAGA 60.951 50.000 15.93 0.00 0.00 3.10
257 258 0.519999 GAAATGCTGCAACGCGAGAG 60.520 55.000 15.93 2.43 0.00 3.20
258 259 1.497278 GAAATGCTGCAACGCGAGA 59.503 52.632 15.93 0.00 0.00 4.04
274 275 0.665068 CACGTGTTCCCATCGTCGAA 60.665 55.000 7.58 0.00 35.62 3.71
298 299 2.286833 TCTCGTTGAGAAACGCTTTTGG 59.713 45.455 6.14 0.00 45.06 3.28
299 300 3.280775 GTCTCGTTGAGAAACGCTTTTG 58.719 45.455 6.14 0.00 45.06 2.44
303 304 1.276145 GCGTCTCGTTGAGAAACGCT 61.276 55.000 19.47 0.00 45.68 5.07
305 306 1.773496 GGCGTCTCGTTGAGAAACG 59.227 57.895 4.68 4.68 46.65 3.60
330 331 4.681978 AGTTCCGGGAGCGTGCAC 62.682 66.667 6.82 6.82 0.00 4.57
335 336 2.048503 ACGAAAGTTCCGGGAGCG 60.049 61.111 0.00 0.00 46.40 5.03
354 359 0.538746 TACCAGTCAGCCGTCAGACA 60.539 55.000 0.41 0.00 37.23 3.41
355 360 0.601558 TTACCAGTCAGCCGTCAGAC 59.398 55.000 0.00 0.00 35.02 3.51
356 361 0.601558 GTTACCAGTCAGCCGTCAGA 59.398 55.000 0.00 0.00 0.00 3.27
359 364 1.145803 GTTGTTACCAGTCAGCCGTC 58.854 55.000 0.00 0.00 0.00 4.79
360 365 0.599204 CGTTGTTACCAGTCAGCCGT 60.599 55.000 0.00 0.00 0.00 5.68
361 366 0.319211 TCGTTGTTACCAGTCAGCCG 60.319 55.000 0.00 0.00 0.00 5.52
362 367 1.145803 GTCGTTGTTACCAGTCAGCC 58.854 55.000 0.00 0.00 0.00 4.85
364 369 2.404215 CAGGTCGTTGTTACCAGTCAG 58.596 52.381 0.00 0.00 39.64 3.51
365 370 1.069513 CCAGGTCGTTGTTACCAGTCA 59.930 52.381 0.00 0.00 39.64 3.41
366 371 1.792006 CCAGGTCGTTGTTACCAGTC 58.208 55.000 0.00 0.00 39.64 3.51
367 372 0.250166 GCCAGGTCGTTGTTACCAGT 60.250 55.000 0.00 0.00 39.64 4.00
368 373 0.953960 GGCCAGGTCGTTGTTACCAG 60.954 60.000 0.00 0.00 39.64 4.00
383 407 2.577059 GAATCTGACGACCGGCCA 59.423 61.111 0.00 0.00 0.00 5.36
384 408 1.996786 TACGAATCTGACGACCGGCC 61.997 60.000 0.00 0.00 34.70 6.13
385 409 0.030369 ATACGAATCTGACGACCGGC 59.970 55.000 0.00 0.00 34.70 6.13
394 420 0.809636 TGGCCGCACATACGAATCTG 60.810 55.000 0.00 0.00 34.06 2.90
404 430 1.515081 GTAAGTAAAGTGGCCGCACA 58.485 50.000 20.59 0.00 0.00 4.57
418 444 2.042831 CCGAGTCCCGACCGTAAGT 61.043 63.158 0.00 0.00 41.76 2.24
419 445 2.768492 CCCGAGTCCCGACCGTAAG 61.768 68.421 0.00 0.00 41.76 2.34
420 446 2.751436 CCCGAGTCCCGACCGTAA 60.751 66.667 0.00 0.00 41.76 3.18
421 447 3.716195 TCCCGAGTCCCGACCGTA 61.716 66.667 0.00 0.00 41.76 4.02
447 473 5.845391 TTTTGGGTTCTTTTCGTGAAGAT 57.155 34.783 4.54 0.00 35.70 2.40
514 541 6.763135 ACATGACATCGCACTAATTATGTTCT 59.237 34.615 0.00 0.00 32.87 3.01
523 550 3.073678 AGCAAACATGACATCGCACTAA 58.926 40.909 0.00 0.00 0.00 2.24
575 786 1.405821 CAAGACCTACCTAGCAGACGG 59.594 57.143 0.00 0.00 0.00 4.79
586 797 2.059541 GACACAAGACGCAAGACCTAC 58.940 52.381 0.00 0.00 43.62 3.18
587 798 1.961394 AGACACAAGACGCAAGACCTA 59.039 47.619 0.00 0.00 43.62 3.08
588 799 0.753262 AGACACAAGACGCAAGACCT 59.247 50.000 0.00 0.00 43.62 3.85
589 800 1.140816 GAGACACAAGACGCAAGACC 58.859 55.000 0.00 0.00 43.62 3.85
590 801 1.852942 TGAGACACAAGACGCAAGAC 58.147 50.000 0.00 0.00 43.62 3.01
591 802 2.595124 TTGAGACACAAGACGCAAGA 57.405 45.000 0.00 0.00 36.04 3.02
592 803 3.673746 TTTTGAGACACAAGACGCAAG 57.326 42.857 0.00 0.00 39.77 4.01
611 822 3.487120 AGACGCAAGACCTACCTTTTT 57.513 42.857 0.00 0.00 43.62 1.94
612 823 3.139077 CAAGACGCAAGACCTACCTTTT 58.861 45.455 0.00 0.00 43.62 2.27
613 824 2.367567 TCAAGACGCAAGACCTACCTTT 59.632 45.455 0.00 0.00 43.62 3.11
614 825 1.968493 TCAAGACGCAAGACCTACCTT 59.032 47.619 0.00 0.00 43.62 3.50
615 826 1.629043 TCAAGACGCAAGACCTACCT 58.371 50.000 0.00 0.00 43.62 3.08
616 827 2.674796 ATCAAGACGCAAGACCTACC 57.325 50.000 0.00 0.00 43.62 3.18
627 838 1.154035 GGCCGGCAAAATCAAGACG 60.154 57.895 30.85 0.00 35.64 4.18
645 856 6.012658 TGGAATCGAGAATTTTCCTTGTTG 57.987 37.500 14.21 0.00 39.72 3.33
714 931 1.969200 GCTGAGCTGAGAGCCCATGA 61.969 60.000 3.62 0.00 43.77 3.07
786 1003 1.136690 GTGACGTGTTTGCTGATCGA 58.863 50.000 0.00 0.00 0.00 3.59
787 1004 0.163788 GGTGACGTGTTTGCTGATCG 59.836 55.000 0.00 0.00 0.00 3.69
788 1005 0.517316 GGGTGACGTGTTTGCTGATC 59.483 55.000 0.00 0.00 0.00 2.92
789 1006 0.108585 AGGGTGACGTGTTTGCTGAT 59.891 50.000 0.00 0.00 0.00 2.90
841 1071 5.859495 AGCTTGAGTATTTATAGAGGTGGC 58.141 41.667 0.00 0.00 0.00 5.01
861 1091 2.671177 GCGTGAATGTGTGCGAGCT 61.671 57.895 0.00 0.00 0.00 4.09
873 1103 2.429571 GTCGGTAGTGCGCGTGAA 60.430 61.111 8.43 0.00 0.00 3.18
875 1105 4.710695 TGGTCGGTAGTGCGCGTG 62.711 66.667 8.43 0.00 0.00 5.34
876 1106 3.502990 TTTGGTCGGTAGTGCGCGT 62.503 57.895 8.43 0.00 0.00 6.01
878 1108 2.674084 GGTTTGGTCGGTAGTGCGC 61.674 63.158 0.00 0.00 0.00 6.09
879 1109 1.301087 TGGTTTGGTCGGTAGTGCG 60.301 57.895 0.00 0.00 0.00 5.34
880 1110 1.232621 GGTGGTTTGGTCGGTAGTGC 61.233 60.000 0.00 0.00 0.00 4.40
888 1118 2.181521 TTGCGACGGTGGTTTGGTC 61.182 57.895 0.00 0.00 0.00 4.02
956 1186 3.303461 CGTTGGTGTAGTTTTGCGATTGA 60.303 43.478 0.00 0.00 0.00 2.57
957 1187 2.970609 CGTTGGTGTAGTTTTGCGATTG 59.029 45.455 0.00 0.00 0.00 2.67
958 1188 2.603652 GCGTTGGTGTAGTTTTGCGATT 60.604 45.455 0.00 0.00 0.00 3.34
959 1189 1.069500 GCGTTGGTGTAGTTTTGCGAT 60.069 47.619 0.00 0.00 0.00 4.58
988 1218 0.533755 GATGCCATCACCCGGAGAAG 60.534 60.000 0.73 0.00 0.00 2.85
1289 1532 3.323979 ACGCGAAGGACCTATGGATTAAT 59.676 43.478 15.93 0.00 0.00 1.40
1291 1534 2.295349 GACGCGAAGGACCTATGGATTA 59.705 50.000 15.93 0.00 0.00 1.75
1387 1634 8.548025 TGATCTTATATTGTGAGACCAAGGAAA 58.452 33.333 0.00 0.00 0.00 3.13
1389 1636 7.675161 TGATCTTATATTGTGAGACCAAGGA 57.325 36.000 0.00 0.00 0.00 3.36
1505 1752 7.546250 TTGAGCCAATAAAATTCACCCTTTA 57.454 32.000 0.00 0.00 0.00 1.85
1540 1787 8.070171 GCGTGTGTGCTCATATTATATCTTTTT 58.930 33.333 0.00 0.00 0.00 1.94
1542 1789 6.147821 GGCGTGTGTGCTCATATTATATCTTT 59.852 38.462 0.00 0.00 34.52 2.52
1549 1796 1.208293 TGGGCGTGTGTGCTCATATTA 59.792 47.619 0.00 0.00 41.34 0.98
1558 1805 4.320456 AGAGGCTGGGCGTGTGTG 62.320 66.667 0.00 0.00 0.00 3.82
1564 1811 0.035317 TATTATGCAGAGGCTGGGCG 59.965 55.000 0.00 0.00 41.91 6.13
1565 1812 2.157738 CTTATTATGCAGAGGCTGGGC 58.842 52.381 0.00 0.00 41.91 5.36
1567 1814 3.777106 TCCTTATTATGCAGAGGCTGG 57.223 47.619 0.00 0.00 41.91 4.85
1583 1830 1.181098 GGTTGGCTGTGTGCATCCTT 61.181 55.000 0.00 0.00 45.15 3.36
1589 1836 0.805711 GTGTTTGGTTGGCTGTGTGC 60.806 55.000 0.00 0.00 41.94 4.57
1594 1841 0.525242 CGTGTGTGTTTGGTTGGCTG 60.525 55.000 0.00 0.00 0.00 4.85
1603 1850 3.492756 GGCATATTTTTGCGTGTGTGTTT 59.507 39.130 0.00 0.00 43.71 2.83
1620 1869 3.244735 TGACCTTGCTAGTTGTTGGCATA 60.245 43.478 0.00 0.00 43.30 3.14
1622 1871 1.133945 TGACCTTGCTAGTTGTTGGCA 60.134 47.619 0.00 0.00 42.03 4.92
1624 1873 2.571212 TGTGACCTTGCTAGTTGTTGG 58.429 47.619 0.00 0.00 0.00 3.77
1677 1926 5.988287 TCATTGTTTTGGAGCTTTTTCCTT 58.012 33.333 0.00 0.00 38.12 3.36
1679 1928 6.676237 TTTCATTGTTTTGGAGCTTTTTCC 57.324 33.333 0.00 0.00 37.77 3.13
1687 1936 7.756272 TCGATTGATGATTTCATTGTTTTGGAG 59.244 33.333 0.00 0.00 36.57 3.86
1688 1937 7.541783 GTCGATTGATGATTTCATTGTTTTGGA 59.458 33.333 0.00 0.00 36.57 3.53
1689 1938 7.328982 TGTCGATTGATGATTTCATTGTTTTGG 59.671 33.333 0.00 0.00 36.57 3.28
1690 1939 8.230112 TGTCGATTGATGATTTCATTGTTTTG 57.770 30.769 0.00 0.00 36.57 2.44
1693 1942 8.084073 AGTTTGTCGATTGATGATTTCATTGTT 58.916 29.630 0.00 0.00 36.57 2.83
1695 1944 9.003112 GTAGTTTGTCGATTGATGATTTCATTG 57.997 33.333 0.00 0.00 36.57 2.82
1698 1947 7.665561 TGTAGTTTGTCGATTGATGATTTCA 57.334 32.000 0.00 0.00 0.00 2.69
1711 1973 3.713288 TGGTCTCAGTTGTAGTTTGTCG 58.287 45.455 0.00 0.00 0.00 4.35
1773 2035 2.023673 CTGAGGGTGTTGCTGTTGAAA 58.976 47.619 0.00 0.00 0.00 2.69
1875 2138 3.322466 CCCTCCGCTCAACCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
1954 2221 0.396695 TATGTGACCTCCTCCGACCC 60.397 60.000 0.00 0.00 0.00 4.46
2183 4474 6.079120 GCAACATGAAACCATGCATTAAAAC 58.921 36.000 0.00 0.00 43.92 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.