Multiple sequence alignment - TraesCS5B01G300400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G300400 chr5B 100.000 4054 0 0 1 4054 485425311 485429364 0.000000e+00 7487.0
1 TraesCS5B01G300400 chr5B 90.945 1005 57 15 2173 3160 484644311 484643324 0.000000e+00 1321.0
2 TraesCS5B01G300400 chr5B 97.696 738 17 0 971 1708 484645039 484644302 0.000000e+00 1269.0
3 TraesCS5B01G300400 chr5B 98.925 465 4 1 1709 2172 74431954 74431490 0.000000e+00 830.0
4 TraesCS5B01G300400 chr5B 90.179 112 9 2 843 954 484645120 484645011 1.170000e-30 145.0
5 TraesCS5B01G300400 chr5D 94.250 1026 40 3 700 1708 403155917 403154894 0.000000e+00 1550.0
6 TraesCS5B01G300400 chr5D 91.461 1136 62 20 2177 3286 404189120 404190246 0.000000e+00 1528.0
7 TraesCS5B01G300400 chr5D 92.040 1005 46 14 2173 3160 403154903 403153916 0.000000e+00 1382.0
8 TraesCS5B01G300400 chr5D 96.405 751 25 2 959 1708 404188376 404189125 0.000000e+00 1236.0
9 TraesCS5B01G300400 chr5D 81.590 239 30 12 3434 3661 2134751 2134516 6.920000e-43 185.0
10 TraesCS5B01G300400 chr5D 74.531 373 52 19 3299 3650 404190338 404190688 5.500000e-24 122.0
11 TraesCS5B01G300400 chr5D 84.043 94 15 0 1615 1708 256718217 256718310 1.550000e-14 91.6
12 TraesCS5B01G300400 chr5A 91.449 994 50 15 2177 3149 510884407 510885386 0.000000e+00 1332.0
13 TraesCS5B01G300400 chr5A 96.556 755 26 0 954 1708 510883658 510884412 0.000000e+00 1251.0
14 TraesCS5B01G300400 chr5A 95.308 746 35 0 963 1708 510015675 510014930 0.000000e+00 1184.0
15 TraesCS5B01G300400 chr5A 89.662 948 45 16 2503 3443 510013554 510012653 0.000000e+00 1158.0
16 TraesCS5B01G300400 chr5A 98.520 473 4 3 1706 2175 644319117 644318645 0.000000e+00 832.0
17 TraesCS5B01G300400 chr5A 98.925 465 4 1 1709 2172 555992864 555992400 0.000000e+00 830.0
18 TraesCS5B01G300400 chr5A 98.305 472 7 1 1708 2178 93734855 93734384 0.000000e+00 826.0
19 TraesCS5B01G300400 chr5A 96.310 271 10 0 2177 2447 510014935 510014665 2.870000e-121 446.0
20 TraesCS5B01G300400 chr5A 87.368 285 25 6 30 312 510029022 510028747 2.350000e-82 316.0
21 TraesCS5B01G300400 chr5A 83.383 337 45 10 302 634 510028723 510028394 6.590000e-78 302.0
22 TraesCS5B01G300400 chr5A 86.555 238 20 2 3818 4054 510012213 510011987 6.730000e-63 252.0
23 TraesCS5B01G300400 chr5A 85.279 197 26 3 3456 3650 583689774 583689579 2.470000e-47 200.0
24 TraesCS5B01G300400 chr5A 94.488 127 6 1 705 831 510026608 510026483 1.150000e-45 195.0
25 TraesCS5B01G300400 chr5A 80.576 278 24 12 3169 3443 510004252 510004002 1.920000e-43 187.0
26 TraesCS5B01G300400 chr5A 94.444 108 6 0 848 955 510015745 510015638 2.510000e-37 167.0
27 TraesCS5B01G300400 chr5A 81.000 100 12 6 3710 3804 677833994 677834091 5.620000e-09 73.1
28 TraesCS5B01G300400 chr1D 86.275 918 86 21 2173 3071 220420840 220421736 0.000000e+00 961.0
29 TraesCS5B01G300400 chr1D 91.114 709 61 2 1001 1708 220420142 220420849 0.000000e+00 959.0
30 TraesCS5B01G300400 chr1B 86.150 917 92 20 2173 3071 315390242 315389343 0.000000e+00 957.0
31 TraesCS5B01G300400 chr1B 90.504 695 62 4 1016 1708 315390925 315390233 0.000000e+00 915.0
32 TraesCS5B01G300400 chr1B 98.726 471 4 2 1704 2173 629117799 629118268 0.000000e+00 835.0
33 TraesCS5B01G300400 chr1B 98.925 465 4 1 1709 2172 543904880 543904416 0.000000e+00 830.0
34 TraesCS5B01G300400 chr2D 89.793 725 72 2 985 1708 336653633 336654356 0.000000e+00 928.0
35 TraesCS5B01G300400 chr2D 79.661 236 48 0 1343 1578 87820401 87820166 1.940000e-38 171.0
36 TraesCS5B01G300400 chr1A 85.011 914 91 20 2173 3071 284321256 284322138 0.000000e+00 887.0
37 TraesCS5B01G300400 chr1A 86.744 694 72 8 1016 1708 284320591 284321265 0.000000e+00 754.0
38 TraesCS5B01G300400 chr1A 79.474 190 38 1 3456 3644 6440803 6440614 2.540000e-27 134.0
39 TraesCS5B01G300400 chr1A 90.000 60 5 1 3750 3808 73307688 73307747 4.350000e-10 76.8
40 TraesCS5B01G300400 chr2A 88.000 725 65 8 985 1708 446997990 446998693 0.000000e+00 837.0
41 TraesCS5B01G300400 chr2A 98.932 468 4 1 1706 2172 9344918 9344451 0.000000e+00 835.0
42 TraesCS5B01G300400 chr2A 87.640 534 55 4 2524 3047 446999067 446999599 9.630000e-171 610.0
43 TraesCS5B01G300400 chr2A 93.680 269 17 0 2173 2441 446998684 446998952 1.750000e-108 403.0
44 TraesCS5B01G300400 chr2A 92.453 53 2 2 3391 3441 118678132 118678184 1.560000e-09 75.0
45 TraesCS5B01G300400 chr2A 84.507 71 9 2 157 227 11000135 11000067 7.270000e-08 69.4
46 TraesCS5B01G300400 chr2B 98.929 467 3 2 1708 2173 637798183 637798648 0.000000e+00 833.0
47 TraesCS5B01G300400 chr2B 93.617 47 0 2 3393 3436 1345858 1345904 2.620000e-07 67.6
48 TraesCS5B01G300400 chr3A 98.925 465 4 1 1709 2172 608112771 608112307 0.000000e+00 830.0
49 TraesCS5B01G300400 chr3A 80.247 243 42 3 3458 3694 749573593 749573351 1.160000e-40 178.0
50 TraesCS5B01G300400 chr7D 86.319 709 92 4 983 1687 506886554 506887261 0.000000e+00 767.0
51 TraesCS5B01G300400 chr7D 84.906 53 8 0 3752 3804 594146644 594146696 2.000000e-03 54.7
52 TraesCS5B01G300400 chr6A 80.521 652 84 26 1026 1672 117005377 117004764 1.030000e-125 460.0
53 TraesCS5B01G300400 chr6A 79.661 236 48 0 1343 1578 96768509 96768274 1.940000e-38 171.0
54 TraesCS5B01G300400 chr6A 81.500 200 37 0 1379 1578 376926323 376926124 9.010000e-37 165.0
55 TraesCS5B01G300400 chr6A 84.043 94 15 0 1615 1708 187009793 187009700 1.550000e-14 91.6
56 TraesCS5B01G300400 chr6D 80.368 652 85 26 1026 1672 97930099 97929486 4.780000e-124 455.0
57 TraesCS5B01G300400 chr6D 85.204 196 25 3 3456 3650 304688614 304688806 8.890000e-47 198.0
58 TraesCS5B01G300400 chr4B 80.053 376 73 2 1334 1708 630628044 630628418 1.110000e-70 278.0
59 TraesCS5B01G300400 chr4D 85.204 196 28 1 3456 3650 405720759 405720954 2.470000e-47 200.0
60 TraesCS5B01G300400 chr4D 81.633 245 32 8 3456 3688 51456424 51456667 1.490000e-44 191.0
61 TraesCS5B01G300400 chr4D 84.043 94 15 0 1615 1708 381547995 381548088 1.550000e-14 91.6
62 TraesCS5B01G300400 chr7B 84.184 196 30 1 3456 3650 749498723 749498918 5.350000e-44 189.0
63 TraesCS5B01G300400 chr4A 83.010 206 32 2 3456 3658 733340785 733340580 2.490000e-42 183.0
64 TraesCS5B01G300400 chr3B 83.092 207 27 5 3456 3658 800980939 800980737 8.950000e-42 182.0
65 TraesCS5B01G300400 chr3B 92.500 40 3 0 3398 3437 737400696 737400735 1.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G300400 chr5B 485425311 485429364 4053 False 7487.000000 7487 100.000000 1 4054 1 chr5B.!!$F1 4053
1 TraesCS5B01G300400 chr5B 484643324 484645120 1796 True 911.666667 1321 92.940000 843 3160 3 chr5B.!!$R2 2317
2 TraesCS5B01G300400 chr5D 403153916 403155917 2001 True 1466.000000 1550 93.145000 700 3160 2 chr5D.!!$R2 2460
3 TraesCS5B01G300400 chr5D 404188376 404190688 2312 False 962.000000 1528 87.465667 959 3650 3 chr5D.!!$F2 2691
4 TraesCS5B01G300400 chr5A 510883658 510885386 1728 False 1291.500000 1332 94.002500 954 3149 2 chr5A.!!$F2 2195
5 TraesCS5B01G300400 chr5A 510011987 510015745 3758 True 641.400000 1184 92.455800 848 4054 5 chr5A.!!$R6 3206
6 TraesCS5B01G300400 chr5A 510026483 510029022 2539 True 271.000000 316 88.413000 30 831 3 chr5A.!!$R7 801
7 TraesCS5B01G300400 chr1D 220420142 220421736 1594 False 960.000000 961 88.694500 1001 3071 2 chr1D.!!$F1 2070
8 TraesCS5B01G300400 chr1B 315389343 315390925 1582 True 936.000000 957 88.327000 1016 3071 2 chr1B.!!$R2 2055
9 TraesCS5B01G300400 chr2D 336653633 336654356 723 False 928.000000 928 89.793000 985 1708 1 chr2D.!!$F1 723
10 TraesCS5B01G300400 chr1A 284320591 284322138 1547 False 820.500000 887 85.877500 1016 3071 2 chr1A.!!$F2 2055
11 TraesCS5B01G300400 chr2A 446997990 446999599 1609 False 616.666667 837 89.773333 985 3047 3 chr2A.!!$F2 2062
12 TraesCS5B01G300400 chr7D 506886554 506887261 707 False 767.000000 767 86.319000 983 1687 1 chr7D.!!$F1 704
13 TraesCS5B01G300400 chr6A 117004764 117005377 613 True 460.000000 460 80.521000 1026 1672 1 chr6A.!!$R2 646
14 TraesCS5B01G300400 chr6D 97929486 97930099 613 True 455.000000 455 80.368000 1026 1672 1 chr6D.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 1.125093 ATTGACAGGTGGACCGTGGA 61.125 55.000 0.0 0.0 42.08 4.02 F
514 551 1.745653 GGAAATCCAGAAAAGCTCCCG 59.254 52.381 0.0 0.0 35.64 5.14 F
519 556 2.253610 TCCAGAAAAGCTCCCGAAGTA 58.746 47.619 0.0 0.0 0.00 2.24 F
670 998 2.269241 GGCTTCGGCTTGCTACCT 59.731 61.111 0.0 0.0 41.44 3.08 F
1742 3515 0.036875 GAGTATATGCACCCAGGCCC 59.963 60.000 0.0 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 3496 0.036875 GGGCCTGGGTGCATATACTC 59.963 60.0 0.84 0.0 0.00 2.59 R
1726 3499 0.104462 AGAGGGCCTGGGTGCATATA 60.104 55.0 12.95 0.0 0.00 0.86 R
1732 3505 0.105246 AGATAGAGAGGGCCTGGGTG 60.105 60.0 12.95 0.0 0.00 4.61 R
2555 5482 0.107312 CTGCCTTCTGCCTGCTGTAT 60.107 55.0 0.00 0.0 40.16 2.29 R
3578 6642 0.034337 TTCTGGTGCGTTGGTCCTAC 59.966 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.477144 CTCCTATTTTACGCATAATGTGTCA 57.523 36.000 0.00 0.00 40.70 3.58
25 26 7.851387 TCCTATTTTACGCATAATGTGTCAA 57.149 32.000 0.00 0.00 40.70 3.18
26 27 8.270080 TCCTATTTTACGCATAATGTGTCAAA 57.730 30.769 0.00 0.00 40.70 2.69
27 28 8.731605 TCCTATTTTACGCATAATGTGTCAAAA 58.268 29.630 0.00 0.00 40.70 2.44
28 29 8.794406 CCTATTTTACGCATAATGTGTCAAAAC 58.206 33.333 0.00 0.00 40.70 2.43
50 51 1.125093 ATTGACAGGTGGACCGTGGA 61.125 55.000 0.00 0.00 42.08 4.02
53 54 2.343758 CAGGTGGACCGTGGACAG 59.656 66.667 0.00 0.00 42.08 3.51
79 80 3.818773 ACCATCGACCAGTTTACTTTTGG 59.181 43.478 0.00 0.00 37.98 3.28
81 82 4.517453 CCATCGACCAGTTTACTTTTGGAA 59.483 41.667 0.00 0.00 35.89 3.53
138 139 8.632906 AAATCATTTTTCAAATGCATGGGTTA 57.367 26.923 0.00 0.00 0.00 2.85
142 143 7.603404 TCATTTTTCAAATGCATGGGTTAGAAG 59.397 33.333 0.00 0.00 0.00 2.85
146 147 4.701651 TCAAATGCATGGGTTAGAAGACAG 59.298 41.667 0.00 0.00 0.00 3.51
158 159 9.362151 TGGGTTAGAAGACAGTCAATAAATTTT 57.638 29.630 2.66 0.00 0.00 1.82
284 286 5.721876 AATCACGTGTACGAAAAAGTTCA 57.278 34.783 16.51 0.00 43.02 3.18
285 287 5.721876 ATCACGTGTACGAAAAAGTTCAA 57.278 34.783 16.51 0.00 43.02 2.69
286 288 5.527511 TCACGTGTACGAAAAAGTTCAAA 57.472 34.783 16.51 0.00 43.02 2.69
291 293 7.625309 CACGTGTACGAAAAAGTTCAAATTTTG 59.375 33.333 11.79 2.59 43.02 2.44
292 294 7.537991 ACGTGTACGAAAAAGTTCAAATTTTGA 59.462 29.630 11.79 7.74 43.02 2.69
293 295 8.366666 CGTGTACGAAAAAGTTCAAATTTTGAA 58.633 29.630 18.29 18.29 43.73 2.69
332 368 9.903682 GATTTTGACAAGAAATCTCAGATTTGA 57.096 29.630 17.70 0.00 39.34 2.69
334 370 9.520204 TTTTGACAAGAAATCTCAGATTTGAAC 57.480 29.630 17.70 3.40 31.69 3.18
501 538 8.902806 AGAATTTTTGAAAAGTTTGGGAAATCC 58.097 29.630 0.00 0.00 0.00 3.01
502 539 8.586879 AATTTTTGAAAAGTTTGGGAAATCCA 57.413 26.923 1.22 0.00 45.43 3.41
513 550 2.103373 GGGAAATCCAGAAAAGCTCCC 58.897 52.381 1.22 0.00 37.91 4.30
514 551 1.745653 GGAAATCCAGAAAAGCTCCCG 59.254 52.381 0.00 0.00 35.64 5.14
517 554 2.409948 ATCCAGAAAAGCTCCCGAAG 57.590 50.000 0.00 0.00 0.00 3.79
519 556 2.253610 TCCAGAAAAGCTCCCGAAGTA 58.746 47.619 0.00 0.00 0.00 2.24
621 659 7.978975 TGAAAAGGTTCACGATTGAGAAAATTT 59.021 29.630 0.00 0.00 38.88 1.82
625 663 7.141363 AGGTTCACGATTGAGAAAATTTCAAG 58.859 34.615 8.55 0.00 37.91 3.02
670 998 2.269241 GGCTTCGGCTTGCTACCT 59.731 61.111 0.00 0.00 41.44 3.08
688 1016 2.812011 ACCTAGCGAACATGGTTCAAAC 59.188 45.455 9.50 0.00 0.00 2.93
917 2687 6.035112 CGTCATAGATCGATCGATTGACTAGA 59.965 42.308 35.27 24.73 35.08 2.43
1206 2976 2.727392 CCCCGCCGTCTTCACCATA 61.727 63.158 0.00 0.00 0.00 2.74
1705 3478 2.935481 TGGGACAGGGGCTCAAGG 60.935 66.667 0.00 0.00 0.00 3.61
1706 3479 2.610859 GGGACAGGGGCTCAAGGA 60.611 66.667 0.00 0.00 0.00 3.36
1707 3480 2.674220 GGGACAGGGGCTCAAGGAG 61.674 68.421 0.00 0.00 0.00 3.69
1723 3496 8.941127 GCTCAAGGAGCGAAAATATATTTTAG 57.059 34.615 20.69 20.60 45.85 1.85
1724 3497 8.774586 GCTCAAGGAGCGAAAATATATTTTAGA 58.225 33.333 26.00 12.94 45.85 2.10
1726 3499 9.832445 TCAAGGAGCGAAAATATATTTTAGAGT 57.168 29.630 26.00 16.06 39.86 3.24
1740 3513 4.351874 TTTAGAGTATATGCACCCAGGC 57.648 45.455 0.00 0.00 0.00 4.85
1741 3514 1.059913 AGAGTATATGCACCCAGGCC 58.940 55.000 0.00 0.00 0.00 5.19
1742 3515 0.036875 GAGTATATGCACCCAGGCCC 59.963 60.000 0.00 0.00 0.00 5.80
1743 3516 0.401979 AGTATATGCACCCAGGCCCT 60.402 55.000 0.00 0.00 0.00 5.19
1744 3517 0.036875 GTATATGCACCCAGGCCCTC 59.963 60.000 0.00 0.00 0.00 4.30
1745 3518 0.104462 TATATGCACCCAGGCCCTCT 60.104 55.000 0.00 0.00 0.00 3.69
1746 3519 1.422161 ATATGCACCCAGGCCCTCTC 61.422 60.000 0.00 0.00 0.00 3.20
1747 3520 2.551856 TATGCACCCAGGCCCTCTCT 62.552 60.000 0.00 0.00 0.00 3.10
1748 3521 2.365635 GCACCCAGGCCCTCTCTA 60.366 66.667 0.00 0.00 0.00 2.43
1749 3522 1.768077 GCACCCAGGCCCTCTCTAT 60.768 63.158 0.00 0.00 0.00 1.98
1750 3523 1.763546 GCACCCAGGCCCTCTCTATC 61.764 65.000 0.00 0.00 0.00 2.08
1751 3524 0.105246 CACCCAGGCCCTCTCTATCT 60.105 60.000 0.00 0.00 0.00 1.98
1752 3525 1.148027 CACCCAGGCCCTCTCTATCTA 59.852 57.143 0.00 0.00 0.00 1.98
1753 3526 1.431243 ACCCAGGCCCTCTCTATCTAG 59.569 57.143 0.00 0.00 0.00 2.43
1754 3527 1.555967 CCAGGCCCTCTCTATCTAGC 58.444 60.000 0.00 0.00 0.00 3.42
1755 3528 1.555967 CAGGCCCTCTCTATCTAGCC 58.444 60.000 0.00 0.00 40.79 3.93
1756 3529 1.162505 AGGCCCTCTCTATCTAGCCA 58.837 55.000 0.00 0.00 42.97 4.75
1757 3530 1.721691 AGGCCCTCTCTATCTAGCCAT 59.278 52.381 0.00 0.00 42.97 4.40
1758 3531 2.107366 GGCCCTCTCTATCTAGCCATC 58.893 57.143 0.00 0.00 40.20 3.51
1759 3532 2.107366 GCCCTCTCTATCTAGCCATCC 58.893 57.143 0.00 0.00 0.00 3.51
1760 3533 2.558575 GCCCTCTCTATCTAGCCATCCA 60.559 54.545 0.00 0.00 0.00 3.41
1761 3534 3.885333 GCCCTCTCTATCTAGCCATCCAT 60.885 52.174 0.00 0.00 0.00 3.41
1762 3535 4.360889 CCCTCTCTATCTAGCCATCCATT 58.639 47.826 0.00 0.00 0.00 3.16
1763 3536 4.782156 CCCTCTCTATCTAGCCATCCATTT 59.218 45.833 0.00 0.00 0.00 2.32
1764 3537 5.250313 CCCTCTCTATCTAGCCATCCATTTT 59.750 44.000 0.00 0.00 0.00 1.82
1765 3538 6.240118 CCCTCTCTATCTAGCCATCCATTTTT 60.240 42.308 0.00 0.00 0.00 1.94
1785 3558 6.893958 TTTTTGCTTTAAGATTCGTGCAAA 57.106 29.167 6.81 6.81 44.87 3.68
1786 3559 7.475771 TTTTTGCTTTAAGATTCGTGCAAAT 57.524 28.000 10.90 0.00 45.51 2.32
1787 3560 8.581057 TTTTTGCTTTAAGATTCGTGCAAATA 57.419 26.923 10.90 4.92 45.51 1.40
1788 3561 8.755696 TTTTGCTTTAAGATTCGTGCAAATAT 57.244 26.923 10.90 0.00 45.51 1.28
1789 3562 9.847706 TTTTGCTTTAAGATTCGTGCAAATATA 57.152 25.926 10.90 0.00 45.51 0.86
1831 3604 9.607333 TCTCCCACATAGAATATATCTTGAAGT 57.393 33.333 0.00 0.00 39.71 3.01
1844 3617 5.551760 ATCTTGAAGTTCAAACCTATGCG 57.448 39.130 18.55 5.48 35.73 4.73
1845 3618 3.751175 TCTTGAAGTTCAAACCTATGCGG 59.249 43.478 18.55 4.82 35.73 5.69
1846 3619 1.810151 TGAAGTTCAAACCTATGCGGC 59.190 47.619 2.20 0.00 35.61 6.53
1847 3620 0.802494 AAGTTCAAACCTATGCGGCG 59.198 50.000 0.51 0.51 35.61 6.46
1848 3621 0.321298 AGTTCAAACCTATGCGGCGT 60.321 50.000 9.37 0.00 35.61 5.68
1849 3622 0.179200 GTTCAAACCTATGCGGCGTG 60.179 55.000 9.37 0.00 35.61 5.34
1850 3623 0.320858 TTCAAACCTATGCGGCGTGA 60.321 50.000 9.37 0.00 35.61 4.35
1851 3624 1.017177 TCAAACCTATGCGGCGTGAC 61.017 55.000 9.37 0.00 35.61 3.67
1852 3625 1.004320 AAACCTATGCGGCGTGACA 60.004 52.632 9.37 0.00 35.61 3.58
1853 3626 0.604243 AAACCTATGCGGCGTGACAA 60.604 50.000 9.37 0.00 35.61 3.18
1854 3627 0.604243 AACCTATGCGGCGTGACAAA 60.604 50.000 9.37 0.00 35.61 2.83
1855 3628 1.019278 ACCTATGCGGCGTGACAAAG 61.019 55.000 9.37 0.00 35.61 2.77
1856 3629 1.060937 CTATGCGGCGTGACAAAGC 59.939 57.895 9.37 0.00 0.00 3.51
1857 3630 1.361668 CTATGCGGCGTGACAAAGCT 61.362 55.000 9.37 0.00 0.00 3.74
1858 3631 0.953471 TATGCGGCGTGACAAAGCTT 60.953 50.000 9.37 0.00 0.00 3.74
1859 3632 1.795170 ATGCGGCGTGACAAAGCTTT 61.795 50.000 5.69 5.69 0.00 3.51
1860 3633 1.725973 GCGGCGTGACAAAGCTTTC 60.726 57.895 9.23 0.00 0.00 2.62
1861 3634 1.941812 CGGCGTGACAAAGCTTTCT 59.058 52.632 9.23 0.00 0.00 2.52
1862 3635 0.384725 CGGCGTGACAAAGCTTTCTG 60.385 55.000 9.23 2.17 0.00 3.02
1863 3636 0.944386 GGCGTGACAAAGCTTTCTGA 59.056 50.000 9.23 0.00 0.00 3.27
1864 3637 1.069636 GGCGTGACAAAGCTTTCTGAG 60.070 52.381 9.23 0.21 0.00 3.35
1865 3638 1.599542 GCGTGACAAAGCTTTCTGAGT 59.400 47.619 9.23 3.96 0.00 3.41
1866 3639 2.800544 GCGTGACAAAGCTTTCTGAGTA 59.199 45.455 9.23 0.00 0.00 2.59
1867 3640 3.120854 GCGTGACAAAGCTTTCTGAGTAG 60.121 47.826 9.23 0.00 0.00 2.57
1868 3641 4.299155 CGTGACAAAGCTTTCTGAGTAGA 58.701 43.478 9.23 0.00 0.00 2.59
1869 3642 4.745125 CGTGACAAAGCTTTCTGAGTAGAA 59.255 41.667 9.23 0.00 41.06 2.10
1870 3643 5.406780 CGTGACAAAGCTTTCTGAGTAGAAT 59.593 40.000 9.23 0.00 42.25 2.40
1871 3644 6.400515 CGTGACAAAGCTTTCTGAGTAGAATC 60.401 42.308 9.23 0.00 42.25 2.52
1872 3645 6.648725 GTGACAAAGCTTTCTGAGTAGAATCT 59.351 38.462 9.23 0.00 42.25 2.40
1873 3646 7.815068 GTGACAAAGCTTTCTGAGTAGAATCTA 59.185 37.037 9.23 0.00 42.25 1.98
1874 3647 8.031864 TGACAAAGCTTTCTGAGTAGAATCTAG 58.968 37.037 9.23 0.00 42.25 2.43
1875 3648 7.327214 ACAAAGCTTTCTGAGTAGAATCTAGG 58.673 38.462 9.23 0.00 42.25 3.02
1876 3649 7.179338 ACAAAGCTTTCTGAGTAGAATCTAGGA 59.821 37.037 9.23 0.00 42.25 2.94
1877 3650 7.912778 AAGCTTTCTGAGTAGAATCTAGGAT 57.087 36.000 0.00 0.00 42.25 3.24
1878 3651 9.427821 AAAGCTTTCTGAGTAGAATCTAGGATA 57.572 33.333 5.69 0.00 42.25 2.59
1879 3652 9.427821 AAGCTTTCTGAGTAGAATCTAGGATAA 57.572 33.333 0.00 0.00 42.25 1.75
1880 3653 9.427821 AGCTTTCTGAGTAGAATCTAGGATAAA 57.572 33.333 0.00 0.00 42.25 1.40
1884 3657 9.575868 TTCTGAGTAGAATCTAGGATAAATCGT 57.424 33.333 0.00 0.00 37.99 3.73
1887 3660 9.788889 TGAGTAGAATCTAGGATAAATCGTACA 57.211 33.333 0.00 0.00 0.00 2.90
1976 3749 9.787532 AATATTTATGTCGGACAAAACATTCTG 57.212 29.630 15.72 0.00 37.33 3.02
1977 3750 6.869315 TTTATGTCGGACAAAACATTCTGA 57.131 33.333 15.72 0.00 37.33 3.27
1978 3751 6.869315 TTATGTCGGACAAAACATTCTGAA 57.131 33.333 15.72 0.00 37.33 3.02
1979 3752 5.766150 ATGTCGGACAAAACATTCTGAAA 57.234 34.783 15.72 0.00 32.24 2.69
1980 3753 5.168526 TGTCGGACAAAACATTCTGAAAG 57.831 39.130 8.68 0.00 0.00 2.62
1981 3754 4.878971 TGTCGGACAAAACATTCTGAAAGA 59.121 37.500 8.68 0.00 44.68 2.52
1982 3755 5.530915 TGTCGGACAAAACATTCTGAAAGAT 59.469 36.000 8.68 0.00 46.36 2.40
1983 3756 6.039270 TGTCGGACAAAACATTCTGAAAGATT 59.961 34.615 8.68 0.00 46.36 2.40
1984 3757 6.918022 GTCGGACAAAACATTCTGAAAGATTT 59.082 34.615 2.62 0.00 46.36 2.17
1985 3758 8.073768 GTCGGACAAAACATTCTGAAAGATTTA 58.926 33.333 2.62 0.00 46.36 1.40
1986 3759 8.792633 TCGGACAAAACATTCTGAAAGATTTAT 58.207 29.630 0.00 0.00 46.36 1.40
1987 3760 9.065871 CGGACAAAACATTCTGAAAGATTTATC 57.934 33.333 0.00 0.00 46.36 1.75
1988 3761 9.358872 GGACAAAACATTCTGAAAGATTTATCC 57.641 33.333 9.03 9.03 46.36 2.59
2013 3786 9.267084 CCTAGATTCTAGTTAGAAAGATTTGCC 57.733 37.037 17.41 0.00 44.63 4.52
2014 3787 9.823647 CTAGATTCTAGTTAGAAAGATTTGCCA 57.176 33.333 11.86 0.00 44.63 4.92
2016 3789 9.336171 AGATTCTAGTTAGAAAGATTTGCCATC 57.664 33.333 5.75 0.00 44.63 3.51
2017 3790 7.865706 TTCTAGTTAGAAAGATTTGCCATCC 57.134 36.000 0.00 0.00 39.22 3.51
2018 3791 7.200434 TCTAGTTAGAAAGATTTGCCATCCT 57.800 36.000 0.00 0.00 0.00 3.24
2019 3792 7.050377 TCTAGTTAGAAAGATTTGCCATCCTG 58.950 38.462 0.00 0.00 0.00 3.86
2020 3793 4.400567 AGTTAGAAAGATTTGCCATCCTGC 59.599 41.667 0.00 0.00 0.00 4.85
2021 3794 2.811410 AGAAAGATTTGCCATCCTGCA 58.189 42.857 0.00 0.00 40.07 4.41
2022 3795 3.371965 AGAAAGATTTGCCATCCTGCAT 58.628 40.909 0.00 0.00 41.70 3.96
2023 3796 4.539726 AGAAAGATTTGCCATCCTGCATA 58.460 39.130 0.00 0.00 41.70 3.14
2024 3797 4.583489 AGAAAGATTTGCCATCCTGCATAG 59.417 41.667 0.00 0.00 41.70 2.23
2025 3798 2.872732 AGATTTGCCATCCTGCATAGG 58.127 47.619 0.00 0.00 46.06 2.57
2026 3799 2.176364 AGATTTGCCATCCTGCATAGGT 59.824 45.455 0.00 0.00 44.88 3.08
2027 3800 2.530460 TTTGCCATCCTGCATAGGTT 57.470 45.000 0.00 0.00 44.88 3.50
2028 3801 2.530460 TTGCCATCCTGCATAGGTTT 57.470 45.000 0.00 0.00 44.88 3.27
2029 3802 1.766494 TGCCATCCTGCATAGGTTTG 58.234 50.000 0.00 0.00 44.88 2.93
2030 3803 1.284491 TGCCATCCTGCATAGGTTTGA 59.716 47.619 0.00 0.00 44.88 2.69
2031 3804 2.291475 TGCCATCCTGCATAGGTTTGAA 60.291 45.455 0.00 0.00 44.88 2.69
2032 3805 2.099756 GCCATCCTGCATAGGTTTGAAC 59.900 50.000 0.00 0.00 44.88 3.18
2033 3806 3.624777 CCATCCTGCATAGGTTTGAACT 58.375 45.455 0.00 0.00 44.88 3.01
2034 3807 4.019174 CCATCCTGCATAGGTTTGAACTT 58.981 43.478 0.00 0.00 44.88 2.66
2035 3808 4.463891 CCATCCTGCATAGGTTTGAACTTT 59.536 41.667 0.00 0.00 44.88 2.66
2036 3809 5.652014 CCATCCTGCATAGGTTTGAACTTTA 59.348 40.000 0.00 0.00 44.88 1.85
2037 3810 6.152661 CCATCCTGCATAGGTTTGAACTTTAA 59.847 38.462 0.00 0.00 44.88 1.52
2038 3811 6.817765 TCCTGCATAGGTTTGAACTTTAAG 57.182 37.500 0.00 0.00 44.88 1.85
2039 3812 6.539173 TCCTGCATAGGTTTGAACTTTAAGA 58.461 36.000 0.00 0.00 44.88 2.10
2040 3813 7.175104 TCCTGCATAGGTTTGAACTTTAAGAT 58.825 34.615 0.00 0.00 44.88 2.40
2041 3814 8.325787 TCCTGCATAGGTTTGAACTTTAAGATA 58.674 33.333 0.00 0.00 44.88 1.98
2042 3815 9.125026 CCTGCATAGGTTTGAACTTTAAGATAT 57.875 33.333 0.00 0.00 39.39 1.63
2043 3816 9.941664 CTGCATAGGTTTGAACTTTAAGATATG 57.058 33.333 0.00 0.00 0.00 1.78
2044 3817 9.461312 TGCATAGGTTTGAACTTTAAGATATGT 57.539 29.630 0.00 0.00 0.00 2.29
2054 3827 9.613428 TGAACTTTAAGATATGTTCTATGTGGG 57.387 33.333 0.00 0.00 39.38 4.61
2055 3828 9.832445 GAACTTTAAGATATGTTCTATGTGGGA 57.168 33.333 0.00 0.00 36.73 4.37
2060 3833 7.573968 AAGATATGTTCTATGTGGGAAAAGC 57.426 36.000 0.00 0.00 33.05 3.51
2061 3834 6.662755 AGATATGTTCTATGTGGGAAAAGCA 58.337 36.000 0.00 0.00 30.96 3.91
2062 3835 7.118723 AGATATGTTCTATGTGGGAAAAGCAA 58.881 34.615 0.00 0.00 30.96 3.91
2063 3836 7.615365 AGATATGTTCTATGTGGGAAAAGCAAA 59.385 33.333 0.00 0.00 30.96 3.68
2064 3837 5.860941 TGTTCTATGTGGGAAAAGCAAAA 57.139 34.783 0.00 0.00 0.00 2.44
2065 3838 6.227298 TGTTCTATGTGGGAAAAGCAAAAA 57.773 33.333 0.00 0.00 0.00 1.94
2100 3873 8.766000 TTCATATAGAAACTTAGTTGTTCGCA 57.234 30.769 0.00 0.00 32.05 5.10
2101 3874 8.181487 TCATATAGAAACTTAGTTGTTCGCAC 57.819 34.615 0.00 0.00 0.00 5.34
2102 3875 3.854286 AGAAACTTAGTTGTTCGCACG 57.146 42.857 0.00 0.00 0.00 5.34
2103 3876 2.542595 AGAAACTTAGTTGTTCGCACGG 59.457 45.455 0.00 0.00 0.00 4.94
2104 3877 2.228138 AACTTAGTTGTTCGCACGGA 57.772 45.000 0.00 0.00 0.00 4.69
2105 3878 2.450609 ACTTAGTTGTTCGCACGGAT 57.549 45.000 0.00 0.00 0.00 4.18
2106 3879 2.334838 ACTTAGTTGTTCGCACGGATC 58.665 47.619 0.00 0.00 0.00 3.36
2107 3880 2.029290 ACTTAGTTGTTCGCACGGATCT 60.029 45.455 0.00 0.00 0.00 2.75
2108 3881 2.736144 TAGTTGTTCGCACGGATCTT 57.264 45.000 0.00 0.00 0.00 2.40
2109 3882 2.736144 AGTTGTTCGCACGGATCTTA 57.264 45.000 0.00 0.00 0.00 2.10
2110 3883 3.034721 AGTTGTTCGCACGGATCTTAA 57.965 42.857 0.00 0.00 0.00 1.85
2111 3884 3.395639 AGTTGTTCGCACGGATCTTAAA 58.604 40.909 0.00 0.00 0.00 1.52
2112 3885 3.432252 AGTTGTTCGCACGGATCTTAAAG 59.568 43.478 0.00 0.00 0.00 1.85
2113 3886 1.730064 TGTTCGCACGGATCTTAAAGC 59.270 47.619 0.00 0.00 0.00 3.51
2114 3887 1.730064 GTTCGCACGGATCTTAAAGCA 59.270 47.619 0.00 0.00 0.00 3.91
2115 3888 2.087501 TCGCACGGATCTTAAAGCAA 57.912 45.000 0.00 0.00 0.00 3.91
2116 3889 2.627945 TCGCACGGATCTTAAAGCAAT 58.372 42.857 0.00 0.00 0.00 3.56
2117 3890 3.787785 TCGCACGGATCTTAAAGCAATA 58.212 40.909 0.00 0.00 0.00 1.90
2118 3891 4.377021 TCGCACGGATCTTAAAGCAATAT 58.623 39.130 0.00 0.00 0.00 1.28
2119 3892 4.814234 TCGCACGGATCTTAAAGCAATATT 59.186 37.500 0.00 0.00 0.00 1.28
2120 3893 4.905866 CGCACGGATCTTAAAGCAATATTG 59.094 41.667 11.27 11.27 0.00 1.90
2121 3894 5.277297 CGCACGGATCTTAAAGCAATATTGA 60.277 40.000 19.73 0.00 0.00 2.57
2122 3895 6.494842 GCACGGATCTTAAAGCAATATTGAA 58.505 36.000 19.73 3.55 0.00 2.69
2123 3896 6.634436 GCACGGATCTTAAAGCAATATTGAAG 59.366 38.462 19.73 12.90 0.00 3.02
2124 3897 7.467267 GCACGGATCTTAAAGCAATATTGAAGA 60.467 37.037 19.73 17.32 0.00 2.87
2125 3898 8.066595 CACGGATCTTAAAGCAATATTGAAGAG 58.933 37.037 19.73 9.37 0.00 2.85
2126 3899 7.770897 ACGGATCTTAAAGCAATATTGAAGAGT 59.229 33.333 19.73 9.90 0.00 3.24
2127 3900 8.616076 CGGATCTTAAAGCAATATTGAAGAGTT 58.384 33.333 19.73 5.28 0.00 3.01
2135 3908 9.566432 AAAGCAATATTGAAGAGTTAGGATAGG 57.434 33.333 19.73 0.00 0.00 2.57
2136 3909 8.497910 AGCAATATTGAAGAGTTAGGATAGGA 57.502 34.615 19.73 0.00 0.00 2.94
2137 3910 8.592809 AGCAATATTGAAGAGTTAGGATAGGAG 58.407 37.037 19.73 0.00 0.00 3.69
2138 3911 7.821846 GCAATATTGAAGAGTTAGGATAGGAGG 59.178 40.741 19.73 0.00 0.00 4.30
2139 3912 8.317679 CAATATTGAAGAGTTAGGATAGGAGGG 58.682 40.741 10.04 0.00 0.00 4.30
2140 3913 3.577919 TGAAGAGTTAGGATAGGAGGGC 58.422 50.000 0.00 0.00 0.00 5.19
2141 3914 2.706112 AGAGTTAGGATAGGAGGGCC 57.294 55.000 0.00 0.00 0.00 5.80
2143 3916 2.158234 AGAGTTAGGATAGGAGGGCCTG 60.158 54.545 12.95 0.00 46.45 4.85
2144 3917 1.132689 AGTTAGGATAGGAGGGCCTGG 60.133 57.143 12.95 0.00 46.45 4.45
2145 3918 0.193574 TTAGGATAGGAGGGCCTGGG 59.806 60.000 12.95 0.00 46.45 4.45
2146 3919 1.010602 TAGGATAGGAGGGCCTGGGT 61.011 60.000 12.95 0.00 46.45 4.51
2147 3920 2.150051 GGATAGGAGGGCCTGGGTG 61.150 68.421 12.95 0.00 46.45 4.61
2148 3921 2.774351 ATAGGAGGGCCTGGGTGC 60.774 66.667 12.95 0.00 46.45 5.01
2149 3922 3.658346 ATAGGAGGGCCTGGGTGCA 62.658 63.158 12.95 0.00 46.45 4.57
2150 3923 2.940421 ATAGGAGGGCCTGGGTGCAT 62.940 60.000 12.95 0.00 46.45 3.96
2151 3924 2.264494 TAGGAGGGCCTGGGTGCATA 62.264 60.000 12.95 0.00 46.45 3.14
2152 3925 2.464403 GGAGGGCCTGGGTGCATAT 61.464 63.158 12.95 0.00 0.00 1.78
2153 3926 1.228367 GAGGGCCTGGGTGCATATG 60.228 63.158 12.95 0.00 0.00 1.78
2154 3927 2.914097 GGGCCTGGGTGCATATGC 60.914 66.667 21.09 21.09 42.50 3.14
2155 3928 2.196776 GGCCTGGGTGCATATGCT 59.803 61.111 27.13 0.00 42.66 3.79
2156 3929 1.900498 GGCCTGGGTGCATATGCTC 60.900 63.158 27.13 23.05 42.66 4.26
2157 3930 1.150081 GCCTGGGTGCATATGCTCT 59.850 57.895 27.13 0.00 42.66 4.09
2158 3931 0.397941 GCCTGGGTGCATATGCTCTA 59.602 55.000 27.13 16.10 42.66 2.43
2159 3932 1.202806 GCCTGGGTGCATATGCTCTAA 60.203 52.381 27.13 14.80 42.66 2.10
2160 3933 2.749466 GCCTGGGTGCATATGCTCTAAA 60.749 50.000 27.13 12.65 42.66 1.85
2161 3934 3.554934 CCTGGGTGCATATGCTCTAAAA 58.445 45.455 27.13 4.09 42.66 1.52
2162 3935 3.953612 CCTGGGTGCATATGCTCTAAAAA 59.046 43.478 27.13 3.32 42.66 1.94
2163 3936 4.586001 CCTGGGTGCATATGCTCTAAAAAT 59.414 41.667 27.13 0.00 42.66 1.82
2164 3937 5.278660 CCTGGGTGCATATGCTCTAAAAATC 60.279 44.000 27.13 6.46 42.66 2.17
2165 3938 4.584325 TGGGTGCATATGCTCTAAAAATCC 59.416 41.667 27.13 15.48 42.66 3.01
2166 3939 4.584325 GGGTGCATATGCTCTAAAAATCCA 59.416 41.667 27.13 0.47 42.66 3.41
2167 3940 5.507985 GGGTGCATATGCTCTAAAAATCCAC 60.508 44.000 27.13 12.59 42.66 4.02
2168 3941 5.207768 GTGCATATGCTCTAAAAATCCACG 58.792 41.667 27.13 0.00 42.66 4.94
2169 3942 4.881273 TGCATATGCTCTAAAAATCCACGT 59.119 37.500 27.13 0.00 42.66 4.49
2170 3943 5.007626 TGCATATGCTCTAAAAATCCACGTC 59.992 40.000 27.13 0.00 42.66 4.34
2171 3944 5.560953 GCATATGCTCTAAAAATCCACGTCC 60.561 44.000 20.64 0.00 38.21 4.79
2172 3945 2.343101 TGCTCTAAAAATCCACGTCCG 58.657 47.619 0.00 0.00 0.00 4.79
2173 3946 1.062148 GCTCTAAAAATCCACGTCCGC 59.938 52.381 0.00 0.00 0.00 5.54
2412 4185 1.302033 CAAGGCCGAACAGCTCAGT 60.302 57.895 0.00 0.00 0.00 3.41
2449 5293 6.091713 GCAGTACGAAACACAGGTACATTATT 59.908 38.462 0.00 0.00 39.12 1.40
2463 5307 9.436957 CAGGTACATTATTCATAGTTCCATACC 57.563 37.037 0.00 0.00 0.00 2.73
2496 5349 7.774157 ACATGTGCTCAAATCTTCTCATAGATT 59.226 33.333 0.00 0.00 44.62 2.40
2555 5482 1.525197 CAAGACTCAAACGCGCAGTTA 59.475 47.619 5.73 3.51 43.37 2.24
2651 5578 0.531974 ACGCCAAGTTCTTCGAGCAA 60.532 50.000 0.00 0.00 0.00 3.91
2744 5671 0.605860 AGACAGAGTACGTGGCGTCT 60.606 55.000 0.00 0.00 41.54 4.18
2802 5729 3.879892 CAGAGACTACCTCATGATCGACA 59.120 47.826 0.00 0.00 44.40 4.35
2829 5756 3.120979 TACACGGAGATGGCTCGCG 62.121 63.158 0.00 0.00 42.25 5.87
3088 6037 1.553308 GCACCCGTCGTGTCTTATAC 58.447 55.000 2.30 0.00 44.97 1.47
3286 6237 0.250124 TTGTTCGTTGCTGGGTCGAT 60.250 50.000 0.00 0.00 33.72 3.59
3287 6238 0.669318 TGTTCGTTGCTGGGTCGATC 60.669 55.000 0.00 0.00 33.72 3.69
3288 6239 1.445410 TTCGTTGCTGGGTCGATCG 60.445 57.895 9.36 9.36 33.72 3.69
3289 6240 1.868987 TTCGTTGCTGGGTCGATCGA 61.869 55.000 15.15 15.15 33.72 3.59
3294 6245 1.107945 TGCTGGGTCGATCGACATAA 58.892 50.000 39.98 26.53 46.20 1.90
3302 6253 5.125900 TGGGTCGATCGACATAAAGAAGTAA 59.874 40.000 39.98 14.60 46.20 2.24
3422 6460 9.008965 TGGAAAAACTTTCGATCTATTCATCAA 57.991 29.630 0.00 0.00 0.00 2.57
3423 6461 9.840427 GGAAAAACTTTCGATCTATTCATCAAA 57.160 29.630 0.00 0.00 0.00 2.69
3473 6536 6.261118 GTGTAAACCTATCGACGACTACAAT 58.739 40.000 0.00 0.00 0.00 2.71
3481 6545 3.072211 TCGACGACTACAATCACTGAGT 58.928 45.455 0.00 0.00 0.00 3.41
3485 6549 3.821600 ACGACTACAATCACTGAGTGAGT 59.178 43.478 20.90 15.84 46.04 3.41
3487 6551 4.083271 CGACTACAATCACTGAGTGAGTCA 60.083 45.833 20.90 7.47 46.04 3.41
3490 6554 5.986135 ACTACAATCACTGAGTGAGTCAAAC 59.014 40.000 20.90 0.00 46.04 2.93
3495 6559 1.215014 CTGAGTGAGTCAAACGCGCA 61.215 55.000 5.73 0.00 33.60 6.09
3513 6577 0.680921 CACCGTCATCATTGCCCCTT 60.681 55.000 0.00 0.00 0.00 3.95
3514 6578 0.916086 ACCGTCATCATTGCCCCTTA 59.084 50.000 0.00 0.00 0.00 2.69
3562 6626 3.434641 TGTAGTAGACAGTCGGAAAGTCG 59.565 47.826 0.00 0.00 37.36 4.18
3573 6637 1.347320 GGAAAGTCGTCGTGCTAAGG 58.653 55.000 0.00 0.00 0.00 2.69
3578 6642 2.509336 CGTCGTGCTAAGGCCCAG 60.509 66.667 0.00 0.00 37.74 4.45
3592 6656 1.375523 CCCAGTAGGACCAACGCAC 60.376 63.158 0.00 0.00 38.24 5.34
3598 6662 0.981183 TAGGACCAACGCACCAGAAT 59.019 50.000 0.00 0.00 0.00 2.40
3600 6664 1.066143 AGGACCAACGCACCAGAATAG 60.066 52.381 0.00 0.00 0.00 1.73
3603 6667 0.729116 CCAACGCACCAGAATAGCAG 59.271 55.000 0.00 0.00 0.00 4.24
3605 6669 1.026718 AACGCACCAGAATAGCAGCC 61.027 55.000 0.00 0.00 0.00 4.85
3607 6671 2.828128 GCACCAGAATAGCAGCCGC 61.828 63.158 0.00 0.00 38.99 6.53
3622 6686 2.656651 CGCCGCCGATGAAGAGAG 60.657 66.667 0.00 0.00 36.29 3.20
3626 6690 2.496817 GCCGATGAAGAGAGGCGT 59.503 61.111 0.00 0.00 40.17 5.68
3627 6691 1.880340 GCCGATGAAGAGAGGCGTG 60.880 63.158 0.00 0.00 40.17 5.34
3628 6692 1.227089 CCGATGAAGAGAGGCGTGG 60.227 63.158 0.00 0.00 0.00 4.94
3656 6720 3.099905 AGGATCCAATCTGAACAGACGA 58.900 45.455 15.82 4.06 40.75 4.20
3672 6736 0.531200 ACGAAGACCGGATCCAAGTC 59.469 55.000 19.73 19.73 43.93 3.01
3675 6739 1.409427 GAAGACCGGATCCAAGTCGAT 59.591 52.381 20.67 15.65 35.65 3.59
3685 6749 1.974957 TCCAAGTCGATCCACCAAAGA 59.025 47.619 0.00 0.00 0.00 2.52
3691 6755 2.875933 GTCGATCCACCAAAGACAAACA 59.124 45.455 0.00 0.00 32.57 2.83
3729 6918 2.036862 AGGACACAGACCCTAAACGAAC 59.963 50.000 0.00 0.00 0.00 3.95
3735 6924 3.257624 ACAGACCCTAAACGAACACCTAG 59.742 47.826 0.00 0.00 0.00 3.02
3744 6933 4.942761 AACGAACACCTAGAAACACCTA 57.057 40.909 0.00 0.00 0.00 3.08
3745 6934 4.248691 ACGAACACCTAGAAACACCTAC 57.751 45.455 0.00 0.00 0.00 3.18
3747 6936 4.235360 CGAACACCTAGAAACACCTACAG 58.765 47.826 0.00 0.00 0.00 2.74
3748 6937 4.261909 CGAACACCTAGAAACACCTACAGT 60.262 45.833 0.00 0.00 0.00 3.55
3758 6956 1.076192 ACCTACAGTAGCCCTCCCG 60.076 63.158 1.50 0.00 0.00 5.14
3763 6961 4.541648 AGTAGCCCTCCCGCCGAT 62.542 66.667 0.00 0.00 0.00 4.18
3766 6964 1.906824 TAGCCCTCCCGCCGATAAG 60.907 63.158 0.00 0.00 0.00 1.73
3768 6966 2.523412 CCCTCCCGCCGATAAGGA 60.523 66.667 1.64 0.00 45.00 3.36
3769 6967 2.735237 CCTCCCGCCGATAAGGAC 59.265 66.667 0.00 0.00 45.00 3.85
3779 6977 2.171840 CCGATAAGGACCGAGATCCAT 58.828 52.381 3.58 0.00 45.00 3.41
3783 6981 0.747255 AAGGACCGAGATCCATCACG 59.253 55.000 0.00 0.00 41.73 4.35
3812 7010 2.283145 CCCTAAGGCCATGGAAGATG 57.717 55.000 18.40 1.49 0.00 2.90
3813 7011 1.776667 CCCTAAGGCCATGGAAGATGA 59.223 52.381 18.40 0.00 0.00 2.92
3814 7012 2.175499 CCCTAAGGCCATGGAAGATGAA 59.825 50.000 18.40 0.00 0.00 2.57
3815 7013 3.373001 CCCTAAGGCCATGGAAGATGAAA 60.373 47.826 18.40 0.00 0.00 2.69
3816 7014 3.887716 CCTAAGGCCATGGAAGATGAAAG 59.112 47.826 18.40 0.80 0.00 2.62
3830 7028 3.135348 AGATGAAAGATGAAGCCGATCCA 59.865 43.478 0.00 0.00 0.00 3.41
3833 7031 0.824109 AAGATGAAGCCGATCCACGA 59.176 50.000 0.00 0.00 45.77 4.35
3834 7032 1.043816 AGATGAAGCCGATCCACGAT 58.956 50.000 0.00 0.00 45.77 3.73
3866 7064 2.761195 GGCGCAAAACCCCGATCTC 61.761 63.158 10.83 0.00 0.00 2.75
3951 7150 7.211966 AGATTTCCATCTTCAACAAGTTCAG 57.788 36.000 0.00 0.00 36.18 3.02
3955 7154 5.445069 TCCATCTTCAACAAGTTCAGGAAA 58.555 37.500 0.00 0.00 0.00 3.13
3968 7167 8.084073 ACAAGTTCAGGAAATATGTGTGAATTG 58.916 33.333 0.00 0.00 30.27 2.32
3972 7171 6.623486 TCAGGAAATATGTGTGAATTGCAAG 58.377 36.000 4.94 0.00 0.00 4.01
3989 7188 8.732746 AATTGCAAGTTCTAATTCGTATACCT 57.267 30.769 4.94 0.00 0.00 3.08
3990 7189 8.732746 ATTGCAAGTTCTAATTCGTATACCTT 57.267 30.769 4.94 0.00 0.00 3.50
3991 7190 8.556213 TTGCAAGTTCTAATTCGTATACCTTT 57.444 30.769 0.00 0.00 0.00 3.11
3992 7191 8.556213 TGCAAGTTCTAATTCGTATACCTTTT 57.444 30.769 0.00 0.00 0.00 2.27
3993 7192 9.005777 TGCAAGTTCTAATTCGTATACCTTTTT 57.994 29.630 0.00 0.00 0.00 1.94
4010 7209 3.811031 TTTTTGCGGGTCAGAAGGA 57.189 47.368 0.00 0.00 0.00 3.36
4043 7242 7.915397 GCTAAACCACCACAATTCATGTATTAG 59.085 37.037 0.00 0.00 41.46 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.477144 TGACACATTATGCGTAAAATAGGAG 57.523 36.000 1.76 0.00 0.00 3.69
1 2 7.851387 TTGACACATTATGCGTAAAATAGGA 57.149 32.000 1.76 0.00 0.00 2.94
2 3 8.794406 GTTTTGACACATTATGCGTAAAATAGG 58.206 33.333 1.76 0.00 0.00 2.57
3 4 9.335891 TGTTTTGACACATTATGCGTAAAATAG 57.664 29.630 1.76 0.00 0.00 1.73
4 5 9.847706 ATGTTTTGACACATTATGCGTAAAATA 57.152 25.926 1.76 0.77 33.29 1.40
5 6 8.755696 ATGTTTTGACACATTATGCGTAAAAT 57.244 26.923 1.76 0.00 33.29 1.82
6 7 9.847706 ATATGTTTTGACACATTATGCGTAAAA 57.152 25.926 1.76 0.00 38.40 1.52
7 8 9.847706 AATATGTTTTGACACATTATGCGTAAA 57.152 25.926 1.76 0.00 38.40 2.01
8 9 9.283420 CAATATGTTTTGACACATTATGCGTAA 57.717 29.630 0.00 0.00 38.40 3.18
9 10 8.669243 TCAATATGTTTTGACACATTATGCGTA 58.331 29.630 0.00 0.00 38.40 4.42
10 11 7.534282 TCAATATGTTTTGACACATTATGCGT 58.466 30.769 0.00 0.00 38.40 5.24
11 12 7.967771 TCAATATGTTTTGACACATTATGCG 57.032 32.000 0.00 0.00 38.40 4.73
22 23 4.764823 GGTCCACCTGTCAATATGTTTTGA 59.235 41.667 0.00 0.00 33.32 2.69
23 24 4.379394 CGGTCCACCTGTCAATATGTTTTG 60.379 45.833 0.00 0.00 0.00 2.44
24 25 3.756434 CGGTCCACCTGTCAATATGTTTT 59.244 43.478 0.00 0.00 0.00 2.43
25 26 3.244770 ACGGTCCACCTGTCAATATGTTT 60.245 43.478 0.00 0.00 0.00 2.83
26 27 2.304761 ACGGTCCACCTGTCAATATGTT 59.695 45.455 0.00 0.00 0.00 2.71
27 28 1.906574 ACGGTCCACCTGTCAATATGT 59.093 47.619 0.00 0.00 0.00 2.29
28 29 2.279741 CACGGTCCACCTGTCAATATG 58.720 52.381 0.00 0.00 0.00 1.78
50 51 1.048601 ACTGGTCGATGGTCAACTGT 58.951 50.000 0.00 0.00 0.00 3.55
53 54 3.660865 AGTAAACTGGTCGATGGTCAAC 58.339 45.455 0.00 0.00 0.00 3.18
111 112 7.953752 ACCCATGCATTTGAAAAATGATTTTT 58.046 26.923 15.10 15.10 44.93 1.94
112 113 7.527568 ACCCATGCATTTGAAAAATGATTTT 57.472 28.000 15.14 0.00 41.37 1.82
113 114 7.527568 AACCCATGCATTTGAAAAATGATTT 57.472 28.000 15.14 0.00 0.00 2.17
114 115 8.102047 TCTAACCCATGCATTTGAAAAATGATT 58.898 29.630 15.14 0.77 0.00 2.57
115 116 7.622713 TCTAACCCATGCATTTGAAAAATGAT 58.377 30.769 15.14 4.93 0.00 2.45
116 117 7.002250 TCTAACCCATGCATTTGAAAAATGA 57.998 32.000 15.14 3.10 0.00 2.57
117 118 7.603404 TCTTCTAACCCATGCATTTGAAAAATG 59.397 33.333 0.00 8.09 0.00 2.32
118 119 7.603784 GTCTTCTAACCCATGCATTTGAAAAAT 59.396 33.333 0.00 0.00 0.00 1.82
119 120 6.928492 GTCTTCTAACCCATGCATTTGAAAAA 59.072 34.615 0.00 0.00 0.00 1.94
120 121 6.041409 TGTCTTCTAACCCATGCATTTGAAAA 59.959 34.615 0.00 0.00 0.00 2.29
121 122 5.538053 TGTCTTCTAACCCATGCATTTGAAA 59.462 36.000 0.00 0.00 0.00 2.69
258 260 5.734311 ACTTTTTCGTACACGTGATTTCTG 58.266 37.500 25.01 5.64 40.80 3.02
323 359 5.765677 TCCACGGTTATTTGTTCAAATCTGA 59.234 36.000 13.03 0.93 0.00 3.27
426 463 9.710900 AACTTCTTTCAAATTTTGTGAACTCTT 57.289 25.926 8.89 1.66 34.78 2.85
475 512 8.902806 GGATTTCCCAAACTTTTCAAAAATTCT 58.097 29.630 0.00 0.00 34.14 2.40
476 513 8.681806 TGGATTTCCCAAACTTTTCAAAAATTC 58.318 29.630 0.00 0.00 43.29 2.17
477 514 8.586879 TGGATTTCCCAAACTTTTCAAAAATT 57.413 26.923 0.00 0.00 43.29 1.82
478 515 8.052141 TCTGGATTTCCCAAACTTTTCAAAAAT 58.948 29.630 0.00 0.00 46.07 1.82
479 516 7.398024 TCTGGATTTCCCAAACTTTTCAAAAA 58.602 30.769 0.00 0.00 46.07 1.94
484 521 6.017934 GCTTTTCTGGATTTCCCAAACTTTTC 60.018 38.462 0.00 0.00 46.07 2.29
494 531 1.745653 CGGGAGCTTTTCTGGATTTCC 59.254 52.381 0.00 0.00 0.00 3.13
500 537 2.762535 TACTTCGGGAGCTTTTCTGG 57.237 50.000 0.00 0.00 0.00 3.86
501 538 5.432885 TTTTTACTTCGGGAGCTTTTCTG 57.567 39.130 0.00 0.00 0.00 3.02
552 590 8.692710 GGTTTCCCTTTTCCCTATTACTTTATG 58.307 37.037 0.00 0.00 0.00 1.90
553 591 8.403474 TGGTTTCCCTTTTCCCTATTACTTTAT 58.597 33.333 0.00 0.00 0.00 1.40
558 596 6.921486 TTTGGTTTCCCTTTTCCCTATTAC 57.079 37.500 0.00 0.00 0.00 1.89
591 629 6.857956 TCTCAATCGTGAACCTTTTCAAAAA 58.142 32.000 0.00 0.00 43.52 1.94
592 630 6.443934 TCTCAATCGTGAACCTTTTCAAAA 57.556 33.333 0.00 0.00 43.52 2.44
593 631 6.443934 TTCTCAATCGTGAACCTTTTCAAA 57.556 33.333 0.00 0.00 43.52 2.69
594 632 6.443934 TTTCTCAATCGTGAACCTTTTCAA 57.556 33.333 0.00 0.00 43.52 2.69
596 634 7.930513 AATTTTCTCAATCGTGAACCTTTTC 57.069 32.000 0.00 0.00 31.88 2.29
601 639 7.138736 TCTTGAAATTTTCTCAATCGTGAACC 58.861 34.615 10.33 0.00 32.53 3.62
634 672 2.369532 GCCCCCGTATAGTCCATTAACA 59.630 50.000 0.00 0.00 0.00 2.41
635 673 2.636403 AGCCCCCGTATAGTCCATTAAC 59.364 50.000 0.00 0.00 0.00 2.01
636 674 2.980548 AGCCCCCGTATAGTCCATTAA 58.019 47.619 0.00 0.00 0.00 1.40
637 675 2.708037 AGCCCCCGTATAGTCCATTA 57.292 50.000 0.00 0.00 0.00 1.90
638 676 1.697982 GAAGCCCCCGTATAGTCCATT 59.302 52.381 0.00 0.00 0.00 3.16
639 677 1.349067 GAAGCCCCCGTATAGTCCAT 58.651 55.000 0.00 0.00 0.00 3.41
640 678 1.111116 CGAAGCCCCCGTATAGTCCA 61.111 60.000 0.00 0.00 0.00 4.02
641 679 1.664306 CGAAGCCCCCGTATAGTCC 59.336 63.158 0.00 0.00 0.00 3.85
642 680 1.664306 CCGAAGCCCCCGTATAGTC 59.336 63.158 0.00 0.00 0.00 2.59
643 681 2.505167 GCCGAAGCCCCCGTATAGT 61.505 63.158 0.00 0.00 0.00 2.12
644 682 1.755393 AAGCCGAAGCCCCCGTATAG 61.755 60.000 0.00 0.00 41.25 1.31
646 684 3.087906 AAGCCGAAGCCCCCGTAT 61.088 61.111 0.00 0.00 41.25 3.06
695 1023 7.894376 ATCATTTGAATCATGTTCGCTTTTT 57.106 28.000 0.00 0.00 0.00 1.94
696 1024 8.984891 TTATCATTTGAATCATGTTCGCTTTT 57.015 26.923 0.00 0.00 0.00 2.27
697 1025 9.027129 CATTATCATTTGAATCATGTTCGCTTT 57.973 29.630 0.00 0.00 0.00 3.51
783 2536 6.035112 GTCCGCTCTACAACTAAGATTTGAAG 59.965 42.308 0.00 0.00 0.00 3.02
917 2687 1.091537 GCGGATCTCTAGCGAGCTAT 58.908 55.000 5.18 0.00 37.19 2.97
946 2716 4.612712 CGAGCTAGTCAATCGATTCTCTCC 60.613 50.000 7.92 5.01 38.72 3.71
949 2719 2.977169 GCGAGCTAGTCAATCGATTCTC 59.023 50.000 7.92 9.64 38.72 2.87
1206 2976 4.496336 GCGCTGATCTTGGGGCCT 62.496 66.667 0.84 0.00 35.76 5.19
1700 3473 9.832445 ACTCTAAAATATATTTTCGCTCCTTGA 57.168 29.630 23.40 7.09 40.24 3.02
1714 3487 8.265055 GCCTGGGTGCATATACTCTAAAATATA 58.735 37.037 0.00 0.00 0.00 0.86
1715 3488 7.112779 GCCTGGGTGCATATACTCTAAAATAT 58.887 38.462 0.00 0.00 0.00 1.28
1716 3489 6.472887 GCCTGGGTGCATATACTCTAAAATA 58.527 40.000 0.00 0.00 0.00 1.40
1717 3490 5.316987 GCCTGGGTGCATATACTCTAAAAT 58.683 41.667 0.00 0.00 0.00 1.82
1718 3491 4.445735 GGCCTGGGTGCATATACTCTAAAA 60.446 45.833 0.00 0.00 0.00 1.52
1719 3492 3.072476 GGCCTGGGTGCATATACTCTAAA 59.928 47.826 0.00 0.00 0.00 1.85
1720 3493 2.637872 GGCCTGGGTGCATATACTCTAA 59.362 50.000 0.00 0.00 0.00 2.10
1721 3494 2.257207 GGCCTGGGTGCATATACTCTA 58.743 52.381 0.00 0.00 0.00 2.43
1722 3495 1.059913 GGCCTGGGTGCATATACTCT 58.940 55.000 0.00 0.00 0.00 3.24
1723 3496 0.036875 GGGCCTGGGTGCATATACTC 59.963 60.000 0.84 0.00 0.00 2.59
1724 3497 0.401979 AGGGCCTGGGTGCATATACT 60.402 55.000 4.50 0.00 0.00 2.12
1725 3498 0.036875 GAGGGCCTGGGTGCATATAC 59.963 60.000 12.95 0.00 0.00 1.47
1726 3499 0.104462 AGAGGGCCTGGGTGCATATA 60.104 55.000 12.95 0.00 0.00 0.86
1727 3500 1.386485 AGAGGGCCTGGGTGCATAT 60.386 57.895 12.95 0.00 0.00 1.78
1728 3501 2.042762 AGAGGGCCTGGGTGCATA 59.957 61.111 12.95 0.00 0.00 3.14
1729 3502 2.551856 TAGAGAGGGCCTGGGTGCAT 62.552 60.000 12.95 0.00 0.00 3.96
1730 3503 2.551856 ATAGAGAGGGCCTGGGTGCA 62.552 60.000 12.95 0.00 0.00 4.57
1731 3504 1.763546 GATAGAGAGGGCCTGGGTGC 61.764 65.000 12.95 0.00 0.00 5.01
1732 3505 0.105246 AGATAGAGAGGGCCTGGGTG 60.105 60.000 12.95 0.00 0.00 4.61
1733 3506 1.431243 CTAGATAGAGAGGGCCTGGGT 59.569 57.143 12.95 0.00 0.00 4.51
1734 3507 1.894978 GCTAGATAGAGAGGGCCTGGG 60.895 61.905 12.95 0.00 0.00 4.45
1735 3508 1.555967 GCTAGATAGAGAGGGCCTGG 58.444 60.000 12.95 0.00 0.00 4.45
1736 3509 1.203112 TGGCTAGATAGAGAGGGCCTG 60.203 57.143 12.95 0.00 40.15 4.85
1737 3510 1.162505 TGGCTAGATAGAGAGGGCCT 58.837 55.000 5.25 5.25 40.15 5.19
1738 3511 2.107366 GATGGCTAGATAGAGAGGGCC 58.893 57.143 0.00 0.00 39.93 5.80
1739 3512 2.107366 GGATGGCTAGATAGAGAGGGC 58.893 57.143 0.00 0.00 0.00 5.19
1740 3513 3.464720 TGGATGGCTAGATAGAGAGGG 57.535 52.381 0.00 0.00 0.00 4.30
1741 3514 6.371595 AAAATGGATGGCTAGATAGAGAGG 57.628 41.667 0.00 0.00 0.00 3.69
1762 3535 6.893958 TTTGCACGAATCTTAAAGCAAAAA 57.106 29.167 7.79 0.00 45.47 1.94
1805 3578 9.607333 ACTTCAAGATATATTCTATGTGGGAGA 57.393 33.333 0.00 0.00 33.05 3.71
1818 3591 8.993121 CGCATAGGTTTGAACTTCAAGATATAT 58.007 33.333 4.43 0.00 37.70 0.86
1819 3592 7.441157 CCGCATAGGTTTGAACTTCAAGATATA 59.559 37.037 4.43 0.00 37.70 0.86
1820 3593 6.260936 CCGCATAGGTTTGAACTTCAAGATAT 59.739 38.462 4.43 2.95 37.70 1.63
1821 3594 5.584649 CCGCATAGGTTTGAACTTCAAGATA 59.415 40.000 4.43 0.97 37.70 1.98
1822 3595 4.396166 CCGCATAGGTTTGAACTTCAAGAT 59.604 41.667 4.43 0.00 37.70 2.40
1823 3596 3.751175 CCGCATAGGTTTGAACTTCAAGA 59.249 43.478 4.43 0.00 37.70 3.02
1824 3597 3.670627 GCCGCATAGGTTTGAACTTCAAG 60.671 47.826 4.43 0.00 43.70 3.02
1825 3598 2.227865 GCCGCATAGGTTTGAACTTCAA 59.772 45.455 0.00 0.00 43.70 2.69
1826 3599 1.810151 GCCGCATAGGTTTGAACTTCA 59.190 47.619 0.00 0.00 43.70 3.02
1827 3600 1.202031 CGCCGCATAGGTTTGAACTTC 60.202 52.381 0.00 0.00 43.70 3.01
1828 3601 0.802494 CGCCGCATAGGTTTGAACTT 59.198 50.000 0.00 0.00 43.70 2.66
1829 3602 0.321298 ACGCCGCATAGGTTTGAACT 60.321 50.000 0.00 0.00 43.70 3.01
1830 3603 0.179200 CACGCCGCATAGGTTTGAAC 60.179 55.000 0.00 0.00 43.70 3.18
1831 3604 0.320858 TCACGCCGCATAGGTTTGAA 60.321 50.000 0.00 0.00 43.70 2.69
1832 3605 1.017177 GTCACGCCGCATAGGTTTGA 61.017 55.000 0.00 0.00 43.70 2.69
1833 3606 1.295357 TGTCACGCCGCATAGGTTTG 61.295 55.000 0.00 0.00 43.70 2.93
1834 3607 0.604243 TTGTCACGCCGCATAGGTTT 60.604 50.000 0.00 0.00 43.70 3.27
1835 3608 0.604243 TTTGTCACGCCGCATAGGTT 60.604 50.000 0.00 0.00 43.70 3.50
1836 3609 1.004320 TTTGTCACGCCGCATAGGT 60.004 52.632 0.00 0.00 43.70 3.08
1837 3610 1.715585 CTTTGTCACGCCGCATAGG 59.284 57.895 0.00 0.00 44.97 2.57
1838 3611 1.060937 GCTTTGTCACGCCGCATAG 59.939 57.895 0.00 0.00 0.00 2.23
1839 3612 0.953471 AAGCTTTGTCACGCCGCATA 60.953 50.000 0.00 0.00 0.00 3.14
1840 3613 1.795170 AAAGCTTTGTCACGCCGCAT 61.795 50.000 11.80 0.00 0.00 4.73
1841 3614 2.387125 GAAAGCTTTGTCACGCCGCA 62.387 55.000 18.30 0.00 0.00 5.69
1842 3615 1.725973 GAAAGCTTTGTCACGCCGC 60.726 57.895 18.30 0.00 0.00 6.53
1843 3616 0.384725 CAGAAAGCTTTGTCACGCCG 60.385 55.000 18.30 0.00 0.00 6.46
1844 3617 0.944386 TCAGAAAGCTTTGTCACGCC 59.056 50.000 18.30 0.00 0.00 5.68
1845 3618 1.599542 ACTCAGAAAGCTTTGTCACGC 59.400 47.619 18.30 0.25 0.00 5.34
1846 3619 4.299155 TCTACTCAGAAAGCTTTGTCACG 58.701 43.478 18.30 5.53 0.00 4.35
1847 3620 6.648725 AGATTCTACTCAGAAAGCTTTGTCAC 59.351 38.462 18.30 1.49 43.89 3.67
1848 3621 6.763355 AGATTCTACTCAGAAAGCTTTGTCA 58.237 36.000 18.30 0.00 43.89 3.58
1849 3622 7.491048 CCTAGATTCTACTCAGAAAGCTTTGTC 59.509 40.741 18.30 2.75 43.89 3.18
1850 3623 7.179338 TCCTAGATTCTACTCAGAAAGCTTTGT 59.821 37.037 18.30 10.29 43.89 2.83
1851 3624 7.551585 TCCTAGATTCTACTCAGAAAGCTTTG 58.448 38.462 18.30 3.78 43.89 2.77
1852 3625 7.726033 TCCTAGATTCTACTCAGAAAGCTTT 57.274 36.000 12.53 12.53 43.89 3.51
1853 3626 7.912778 ATCCTAGATTCTACTCAGAAAGCTT 57.087 36.000 0.00 0.00 43.89 3.74
1854 3627 9.427821 TTTATCCTAGATTCTACTCAGAAAGCT 57.572 33.333 0.00 0.00 43.89 3.74
1858 3631 9.575868 ACGATTTATCCTAGATTCTACTCAGAA 57.424 33.333 0.00 0.00 44.77 3.02
1861 3634 9.788889 TGTACGATTTATCCTAGATTCTACTCA 57.211 33.333 0.00 0.00 0.00 3.41
1950 3723 9.787532 CAGAATGTTTTGTCCGACATAAATATT 57.212 29.630 19.13 19.13 35.55 1.28
1951 3724 9.173021 TCAGAATGTTTTGTCCGACATAAATAT 57.827 29.630 1.09 7.17 35.55 1.28
1952 3725 8.554835 TCAGAATGTTTTGTCCGACATAAATA 57.445 30.769 1.09 5.35 35.55 1.40
1953 3726 7.447374 TCAGAATGTTTTGTCCGACATAAAT 57.553 32.000 1.09 0.00 35.55 1.40
1954 3727 6.869315 TCAGAATGTTTTGTCCGACATAAA 57.131 33.333 1.09 3.82 35.55 1.40
1955 3728 6.869315 TTCAGAATGTTTTGTCCGACATAA 57.131 33.333 1.09 0.89 35.55 1.90
1956 3729 6.708502 TCTTTCAGAATGTTTTGTCCGACATA 59.291 34.615 1.09 0.00 35.55 2.29
1957 3730 5.530915 TCTTTCAGAATGTTTTGTCCGACAT 59.469 36.000 1.09 0.00 38.08 3.06
1958 3731 4.878971 TCTTTCAGAATGTTTTGTCCGACA 59.121 37.500 0.00 0.00 37.40 4.35
1959 3732 5.418310 TCTTTCAGAATGTTTTGTCCGAC 57.582 39.130 0.00 0.00 37.40 4.79
1960 3733 6.633500 AATCTTTCAGAATGTTTTGTCCGA 57.367 33.333 0.00 0.00 37.40 4.55
1961 3734 8.970691 ATAAATCTTTCAGAATGTTTTGTCCG 57.029 30.769 12.31 0.00 37.40 4.79
1962 3735 9.358872 GGATAAATCTTTCAGAATGTTTTGTCC 57.641 33.333 20.68 20.68 37.40 4.02
1987 3760 9.267084 GGCAAATCTTTCTAACTAGAATCTAGG 57.733 37.037 20.18 4.26 41.52 3.02
1988 3761 9.823647 TGGCAAATCTTTCTAACTAGAATCTAG 57.176 33.333 15.25 15.25 41.52 2.43
1990 3763 9.336171 GATGGCAAATCTTTCTAACTAGAATCT 57.664 33.333 0.00 0.00 41.52 2.40
1991 3764 8.563732 GGATGGCAAATCTTTCTAACTAGAATC 58.436 37.037 0.00 0.00 41.52 2.52
1992 3765 8.277918 AGGATGGCAAATCTTTCTAACTAGAAT 58.722 33.333 0.00 0.00 41.52 2.40
1993 3766 7.554118 CAGGATGGCAAATCTTTCTAACTAGAA 59.446 37.037 0.00 0.00 40.33 2.10
1994 3767 7.050377 CAGGATGGCAAATCTTTCTAACTAGA 58.950 38.462 0.00 0.00 0.00 2.43
1995 3768 6.238593 GCAGGATGGCAAATCTTTCTAACTAG 60.239 42.308 0.00 0.00 35.86 2.57
1996 3769 5.590259 GCAGGATGGCAAATCTTTCTAACTA 59.410 40.000 0.00 0.00 35.86 2.24
1997 3770 4.400567 GCAGGATGGCAAATCTTTCTAACT 59.599 41.667 0.00 0.00 35.86 2.24
1998 3771 4.158394 TGCAGGATGGCAAATCTTTCTAAC 59.842 41.667 0.00 0.00 41.65 2.34
1999 3772 4.343231 TGCAGGATGGCAAATCTTTCTAA 58.657 39.130 0.00 0.00 41.65 2.10
2000 3773 3.966979 TGCAGGATGGCAAATCTTTCTA 58.033 40.909 0.00 0.00 41.65 2.10
2001 3774 2.811410 TGCAGGATGGCAAATCTTTCT 58.189 42.857 0.00 0.00 41.65 2.52
2010 3783 1.284491 TCAAACCTATGCAGGATGGCA 59.716 47.619 0.00 0.00 45.91 4.92
2011 3784 2.057137 TCAAACCTATGCAGGATGGC 57.943 50.000 0.00 0.00 45.91 4.40
2012 3785 3.624777 AGTTCAAACCTATGCAGGATGG 58.375 45.455 0.00 0.00 45.91 3.51
2013 3786 5.649782 AAAGTTCAAACCTATGCAGGATG 57.350 39.130 0.00 0.00 45.91 3.51
2014 3787 7.175104 TCTTAAAGTTCAAACCTATGCAGGAT 58.825 34.615 0.00 0.00 45.91 3.24
2015 3788 6.539173 TCTTAAAGTTCAAACCTATGCAGGA 58.461 36.000 0.00 0.00 45.91 3.86
2017 3790 9.941664 CATATCTTAAAGTTCAAACCTATGCAG 57.058 33.333 0.00 0.00 0.00 4.41
2018 3791 9.461312 ACATATCTTAAAGTTCAAACCTATGCA 57.539 29.630 0.00 0.00 0.00 3.96
2028 3801 9.613428 CCCACATAGAACATATCTTAAAGTTCA 57.387 33.333 0.00 0.00 42.01 3.18
2029 3802 9.832445 TCCCACATAGAACATATCTTAAAGTTC 57.168 33.333 0.00 0.00 39.71 3.01
2034 3807 9.120538 GCTTTTCCCACATAGAACATATCTTAA 57.879 33.333 0.00 0.00 39.71 1.85
2035 3808 8.271458 TGCTTTTCCCACATAGAACATATCTTA 58.729 33.333 0.00 0.00 39.71 2.10
2036 3809 7.118723 TGCTTTTCCCACATAGAACATATCTT 58.881 34.615 0.00 0.00 39.71 2.40
2037 3810 6.662755 TGCTTTTCCCACATAGAACATATCT 58.337 36.000 0.00 0.00 42.48 1.98
2038 3811 6.942532 TGCTTTTCCCACATAGAACATATC 57.057 37.500 0.00 0.00 0.00 1.63
2039 3812 7.716799 TTTGCTTTTCCCACATAGAACATAT 57.283 32.000 0.00 0.00 0.00 1.78
2040 3813 7.531857 TTTTGCTTTTCCCACATAGAACATA 57.468 32.000 0.00 0.00 0.00 2.29
2041 3814 6.418057 TTTTGCTTTTCCCACATAGAACAT 57.582 33.333 0.00 0.00 0.00 2.71
2042 3815 5.860941 TTTTGCTTTTCCCACATAGAACA 57.139 34.783 0.00 0.00 0.00 3.18
2074 3847 9.210329 TGCGAACAACTAAGTTTCTATATGAAA 57.790 29.630 0.00 0.00 41.85 2.69
2075 3848 8.653338 GTGCGAACAACTAAGTTTCTATATGAA 58.347 33.333 0.00 0.00 0.00 2.57
2076 3849 7.008901 CGTGCGAACAACTAAGTTTCTATATGA 59.991 37.037 0.00 0.00 0.00 2.15
2077 3850 7.111139 CGTGCGAACAACTAAGTTTCTATATG 58.889 38.462 0.00 0.00 0.00 1.78
2078 3851 6.255020 CCGTGCGAACAACTAAGTTTCTATAT 59.745 38.462 0.00 0.00 0.00 0.86
2079 3852 5.574055 CCGTGCGAACAACTAAGTTTCTATA 59.426 40.000 0.00 0.00 0.00 1.31
2080 3853 4.387862 CCGTGCGAACAACTAAGTTTCTAT 59.612 41.667 0.00 0.00 0.00 1.98
2081 3854 3.737266 CCGTGCGAACAACTAAGTTTCTA 59.263 43.478 0.00 0.00 0.00 2.10
2082 3855 2.542595 CCGTGCGAACAACTAAGTTTCT 59.457 45.455 0.00 0.00 0.00 2.52
2083 3856 2.540931 TCCGTGCGAACAACTAAGTTTC 59.459 45.455 0.00 0.00 0.00 2.78
2084 3857 2.553086 TCCGTGCGAACAACTAAGTTT 58.447 42.857 0.00 0.00 0.00 2.66
2085 3858 2.228138 TCCGTGCGAACAACTAAGTT 57.772 45.000 0.00 0.00 0.00 2.66
2086 3859 2.029290 AGATCCGTGCGAACAACTAAGT 60.029 45.455 0.00 0.00 0.00 2.24
2087 3860 2.607187 AGATCCGTGCGAACAACTAAG 58.393 47.619 0.00 0.00 0.00 2.18
2088 3861 2.736144 AGATCCGTGCGAACAACTAA 57.264 45.000 0.00 0.00 0.00 2.24
2089 3862 2.736144 AAGATCCGTGCGAACAACTA 57.264 45.000 0.00 0.00 0.00 2.24
2090 3863 2.736144 TAAGATCCGTGCGAACAACT 57.264 45.000 0.00 0.00 0.00 3.16
2091 3864 3.732943 CTTTAAGATCCGTGCGAACAAC 58.267 45.455 0.00 0.00 0.00 3.32
2092 3865 2.158841 GCTTTAAGATCCGTGCGAACAA 59.841 45.455 0.00 0.00 0.00 2.83
2093 3866 1.730064 GCTTTAAGATCCGTGCGAACA 59.270 47.619 0.00 0.00 0.00 3.18
2094 3867 1.730064 TGCTTTAAGATCCGTGCGAAC 59.270 47.619 0.00 0.00 0.00 3.95
2095 3868 2.087501 TGCTTTAAGATCCGTGCGAA 57.912 45.000 0.00 0.00 0.00 4.70
2096 3869 2.087501 TTGCTTTAAGATCCGTGCGA 57.912 45.000 0.00 0.00 0.00 5.10
2097 3870 4.732285 ATATTGCTTTAAGATCCGTGCG 57.268 40.909 0.00 0.00 0.00 5.34
2098 3871 6.060028 TCAATATTGCTTTAAGATCCGTGC 57.940 37.500 10.76 0.00 0.00 5.34
2099 3872 7.919690 TCTTCAATATTGCTTTAAGATCCGTG 58.080 34.615 10.76 0.00 0.00 4.94
2100 3873 7.770897 ACTCTTCAATATTGCTTTAAGATCCGT 59.229 33.333 10.76 6.43 0.00 4.69
2101 3874 8.147642 ACTCTTCAATATTGCTTTAAGATCCG 57.852 34.615 10.76 5.90 0.00 4.18
2109 3882 9.566432 CCTATCCTAACTCTTCAATATTGCTTT 57.434 33.333 10.76 2.18 0.00 3.51
2110 3883 8.938883 TCCTATCCTAACTCTTCAATATTGCTT 58.061 33.333 10.76 0.19 0.00 3.91
2111 3884 8.497910 TCCTATCCTAACTCTTCAATATTGCT 57.502 34.615 10.76 0.00 0.00 3.91
2112 3885 7.821846 CCTCCTATCCTAACTCTTCAATATTGC 59.178 40.741 10.76 0.00 0.00 3.56
2113 3886 8.317679 CCCTCCTATCCTAACTCTTCAATATTG 58.682 40.741 9.29 9.29 0.00 1.90
2114 3887 7.037945 GCCCTCCTATCCTAACTCTTCAATATT 60.038 40.741 0.00 0.00 0.00 1.28
2115 3888 6.442244 GCCCTCCTATCCTAACTCTTCAATAT 59.558 42.308 0.00 0.00 0.00 1.28
2116 3889 5.780793 GCCCTCCTATCCTAACTCTTCAATA 59.219 44.000 0.00 0.00 0.00 1.90
2117 3890 4.595350 GCCCTCCTATCCTAACTCTTCAAT 59.405 45.833 0.00 0.00 0.00 2.57
2118 3891 3.967987 GCCCTCCTATCCTAACTCTTCAA 59.032 47.826 0.00 0.00 0.00 2.69
2119 3892 3.577919 GCCCTCCTATCCTAACTCTTCA 58.422 50.000 0.00 0.00 0.00 3.02
2120 3893 2.901192 GGCCCTCCTATCCTAACTCTTC 59.099 54.545 0.00 0.00 0.00 2.87
2121 3894 2.524875 AGGCCCTCCTATCCTAACTCTT 59.475 50.000 0.00 0.00 42.06 2.85
2122 3895 2.157289 AGGCCCTCCTATCCTAACTCT 58.843 52.381 0.00 0.00 42.06 3.24
2123 3896 2.252714 CAGGCCCTCCTATCCTAACTC 58.747 57.143 0.00 0.00 41.93 3.01
2124 3897 1.132689 CCAGGCCCTCCTATCCTAACT 60.133 57.143 0.00 0.00 41.93 2.24
2125 3898 1.353091 CCAGGCCCTCCTATCCTAAC 58.647 60.000 0.00 0.00 41.93 2.34
2126 3899 0.193574 CCCAGGCCCTCCTATCCTAA 59.806 60.000 0.00 0.00 41.93 2.69
2127 3900 1.010602 ACCCAGGCCCTCCTATCCTA 61.011 60.000 0.00 0.00 41.93 2.94
2128 3901 2.344995 ACCCAGGCCCTCCTATCCT 61.345 63.158 0.00 0.00 41.93 3.24
2129 3902 2.150051 CACCCAGGCCCTCCTATCC 61.150 68.421 0.00 0.00 41.93 2.59
2130 3903 2.823758 GCACCCAGGCCCTCCTATC 61.824 68.421 0.00 0.00 41.93 2.08
2131 3904 2.774351 GCACCCAGGCCCTCCTAT 60.774 66.667 0.00 0.00 41.93 2.57
2132 3905 2.264494 TATGCACCCAGGCCCTCCTA 62.264 60.000 0.00 0.00 41.93 2.94
2133 3906 2.940421 ATATGCACCCAGGCCCTCCT 62.940 60.000 0.00 0.00 45.66 3.69
2134 3907 2.464403 ATATGCACCCAGGCCCTCC 61.464 63.158 0.00 0.00 0.00 4.30
2135 3908 1.228367 CATATGCACCCAGGCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
2136 3909 2.929483 CATATGCACCCAGGCCCT 59.071 61.111 0.00 0.00 0.00 5.19
2137 3910 2.914097 GCATATGCACCCAGGCCC 60.914 66.667 22.84 0.00 41.59 5.80
2138 3911 1.900498 GAGCATATGCACCCAGGCC 60.900 63.158 28.62 0.00 45.16 5.19
2139 3912 0.397941 TAGAGCATATGCACCCAGGC 59.602 55.000 28.62 9.12 45.16 4.85
2140 3913 2.936919 TTAGAGCATATGCACCCAGG 57.063 50.000 28.62 0.00 45.16 4.45
2141 3914 5.278660 GGATTTTTAGAGCATATGCACCCAG 60.279 44.000 28.62 0.00 45.16 4.45
2142 3915 4.584325 GGATTTTTAGAGCATATGCACCCA 59.416 41.667 28.62 11.22 45.16 4.51
2143 3916 4.584325 TGGATTTTTAGAGCATATGCACCC 59.416 41.667 28.62 16.60 45.16 4.61
2144 3917 5.523369 GTGGATTTTTAGAGCATATGCACC 58.477 41.667 28.62 19.13 45.16 5.01
2145 3918 5.207768 CGTGGATTTTTAGAGCATATGCAC 58.792 41.667 28.62 22.53 45.16 4.57
2146 3919 4.881273 ACGTGGATTTTTAGAGCATATGCA 59.119 37.500 28.62 6.28 45.16 3.96
2147 3920 5.424121 ACGTGGATTTTTAGAGCATATGC 57.576 39.130 20.36 20.36 42.49 3.14
2148 3921 5.333339 CGGACGTGGATTTTTAGAGCATATG 60.333 44.000 0.00 0.00 0.00 1.78
2149 3922 4.750098 CGGACGTGGATTTTTAGAGCATAT 59.250 41.667 0.00 0.00 0.00 1.78
2150 3923 4.116961 CGGACGTGGATTTTTAGAGCATA 58.883 43.478 0.00 0.00 0.00 3.14
2151 3924 2.936498 CGGACGTGGATTTTTAGAGCAT 59.064 45.455 0.00 0.00 0.00 3.79
2152 3925 2.343101 CGGACGTGGATTTTTAGAGCA 58.657 47.619 0.00 0.00 0.00 4.26
2153 3926 1.062148 GCGGACGTGGATTTTTAGAGC 59.938 52.381 0.00 0.00 0.00 4.09
2154 3927 2.603560 GAGCGGACGTGGATTTTTAGAG 59.396 50.000 0.00 0.00 0.00 2.43
2155 3928 2.028839 TGAGCGGACGTGGATTTTTAGA 60.029 45.455 0.00 0.00 0.00 2.10
2156 3929 2.343101 TGAGCGGACGTGGATTTTTAG 58.657 47.619 0.00 0.00 0.00 1.85
2157 3930 2.459060 TGAGCGGACGTGGATTTTTA 57.541 45.000 0.00 0.00 0.00 1.52
2158 3931 1.535462 CTTGAGCGGACGTGGATTTTT 59.465 47.619 0.00 0.00 0.00 1.94
2159 3932 1.156736 CTTGAGCGGACGTGGATTTT 58.843 50.000 0.00 0.00 0.00 1.82
2160 3933 0.673644 CCTTGAGCGGACGTGGATTT 60.674 55.000 0.00 0.00 0.00 2.17
2161 3934 1.079127 CCTTGAGCGGACGTGGATT 60.079 57.895 0.00 0.00 0.00 3.01
2162 3935 1.949847 CTCCTTGAGCGGACGTGGAT 61.950 60.000 0.00 0.00 0.00 3.41
2163 3936 2.599281 TCCTTGAGCGGACGTGGA 60.599 61.111 0.00 0.00 0.00 4.02
2164 3937 2.125912 CTCCTTGAGCGGACGTGG 60.126 66.667 0.00 0.00 0.00 4.94
2165 3938 2.125912 CCTCCTTGAGCGGACGTG 60.126 66.667 0.00 0.00 0.00 4.49
2166 3939 2.282958 TCCTCCTTGAGCGGACGT 60.283 61.111 0.00 0.00 0.00 4.34
2167 3940 2.492090 CTCCTCCTTGAGCGGACG 59.508 66.667 0.00 0.00 0.00 4.79
2168 3941 2.896443 CCTCCTCCTTGAGCGGAC 59.104 66.667 0.00 0.00 0.00 4.79
2169 3942 3.077556 GCCTCCTCCTTGAGCGGA 61.078 66.667 0.00 0.00 0.00 5.54
2170 3943 4.168291 GGCCTCCTCCTTGAGCGG 62.168 72.222 0.00 0.00 0.00 5.52
2171 3944 2.866085 CTTGGCCTCCTCCTTGAGCG 62.866 65.000 3.32 0.00 0.00 5.03
2172 3945 1.077858 CTTGGCCTCCTCCTTGAGC 60.078 63.158 3.32 0.00 0.00 4.26
2173 3946 1.204113 ACCTTGGCCTCCTCCTTGAG 61.204 60.000 3.32 0.00 0.00 3.02
2412 4185 1.294138 GTACTGCACGGTGGCCTTA 59.706 57.895 10.60 0.00 0.00 2.69
2433 4206 8.325787 TGGAACTATGAATAATGTACCTGTGTT 58.674 33.333 0.00 0.00 0.00 3.32
2496 5349 7.497909 TGCACGAGAATATATATGAGATCGGTA 59.502 37.037 16.74 8.06 33.46 4.02
2555 5482 0.107312 CTGCCTTCTGCCTGCTGTAT 60.107 55.000 0.00 0.00 40.16 2.29
2651 5578 2.125106 GCGTCCTCGGCCATCTTT 60.125 61.111 2.24 0.00 37.56 2.52
2744 5671 3.916544 CCGAGCGCCTGGAGCATA 61.917 66.667 24.28 0.00 44.04 3.14
2802 5729 1.327690 ATCTCCGTGTACATGCCGGT 61.328 55.000 19.35 3.16 42.30 5.28
2829 5756 3.112709 GACTGCTCCGGCGTTGAC 61.113 66.667 6.01 0.00 42.25 3.18
3073 6022 5.670149 AGATACTGTATAAGACACGACGG 57.330 43.478 0.00 0.00 33.31 4.79
3083 6032 9.139734 ACCCGATTCTAACAAGATACTGTATAA 57.860 33.333 0.00 0.00 0.00 0.98
3088 6037 6.421202 GCTAACCCGATTCTAACAAGATACTG 59.579 42.308 0.00 0.00 0.00 2.74
3170 6119 6.120220 AGCCACATTAACACCTACTAATTCC 58.880 40.000 0.00 0.00 0.00 3.01
3171 6120 7.226128 GGTAGCCACATTAACACCTACTAATTC 59.774 40.741 0.00 0.00 0.00 2.17
3173 6122 6.589135 GGTAGCCACATTAACACCTACTAAT 58.411 40.000 0.00 0.00 0.00 1.73
3174 6123 5.394443 CGGTAGCCACATTAACACCTACTAA 60.394 44.000 0.00 0.00 0.00 2.24
3176 6125 3.118884 CGGTAGCCACATTAACACCTACT 60.119 47.826 0.00 0.00 0.00 2.57
3177 6126 3.192466 CGGTAGCCACATTAACACCTAC 58.808 50.000 0.00 0.00 0.00 3.18
3408 6445 7.488187 ACCTTGACATTTGATGAATAGATCG 57.512 36.000 0.00 0.00 0.00 3.69
3449 6488 5.221891 TGTAGTCGTCGATAGGTTTACAC 57.778 43.478 0.00 0.00 0.00 2.90
3450 6489 5.878332 TTGTAGTCGTCGATAGGTTTACA 57.122 39.130 0.00 0.00 0.00 2.41
3465 6528 5.378292 TGACTCACTCAGTGATTGTAGTC 57.622 43.478 22.15 22.15 41.94 2.59
3473 6536 1.852942 GCGTTTGACTCACTCAGTGA 58.147 50.000 7.44 7.44 40.50 3.41
3481 6545 3.334751 CGGTGCGCGTTTGACTCA 61.335 61.111 8.43 0.00 0.00 3.41
3485 6549 2.663478 GATGACGGTGCGCGTTTGA 61.663 57.895 8.43 0.00 0.00 2.69
3487 6551 1.573829 AATGATGACGGTGCGCGTTT 61.574 50.000 8.43 0.00 0.00 3.60
3490 6554 2.021793 CAATGATGACGGTGCGCG 59.978 61.111 0.00 0.00 0.00 6.86
3495 6559 0.916086 TAAGGGGCAATGATGACGGT 59.084 50.000 0.00 0.00 34.32 4.83
3500 6564 3.287867 AGTGAGTAAGGGGCAATGATG 57.712 47.619 0.00 0.00 0.00 3.07
3513 6577 1.541379 TTGCTCGGCTGTAGTGAGTA 58.459 50.000 0.00 0.00 32.32 2.59
3514 6578 0.679505 TTTGCTCGGCTGTAGTGAGT 59.320 50.000 0.00 0.00 32.32 3.41
3573 6637 2.436115 GCGTTGGTCCTACTGGGC 60.436 66.667 1.90 0.00 37.19 5.36
3578 6642 0.034337 TTCTGGTGCGTTGGTCCTAC 59.966 55.000 0.00 0.00 0.00 3.18
3587 6651 1.450312 GGCTGCTATTCTGGTGCGT 60.450 57.895 0.00 0.00 0.00 5.24
3592 6656 2.969238 CGGCGGCTGCTATTCTGG 60.969 66.667 18.85 0.00 42.25 3.86
3605 6669 2.656651 CTCTCTTCATCGGCGGCG 60.657 66.667 27.15 27.15 0.00 6.46
3607 6671 2.279784 GCCTCTCTTCATCGGCGG 60.280 66.667 7.21 0.00 32.22 6.13
3622 6686 2.606275 GATCCTTTCGATCCACGCC 58.394 57.895 0.00 0.00 41.51 5.68
3628 6692 5.118990 TGTTCAGATTGGATCCTTTCGATC 58.881 41.667 14.23 8.57 45.91 3.69
3645 6709 0.596577 TCCGGTCTTCGTCTGTTCAG 59.403 55.000 0.00 0.00 37.11 3.02
3656 6720 1.409427 GATCGACTTGGATCCGGTCTT 59.591 52.381 25.19 16.96 37.45 3.01
3672 6736 2.031157 GGTGTTTGTCTTTGGTGGATCG 60.031 50.000 0.00 0.00 0.00 3.69
3675 6739 2.025793 TGAGGTGTTTGTCTTTGGTGGA 60.026 45.455 0.00 0.00 0.00 4.02
3702 6891 2.696526 AGGGTCTGTGTCCTACTCAA 57.303 50.000 0.00 0.00 0.00 3.02
3716 6905 4.525912 TTCTAGGTGTTCGTTTAGGGTC 57.474 45.455 0.00 0.00 0.00 4.46
3729 6918 4.381718 GGCTACTGTAGGTGTTTCTAGGTG 60.382 50.000 16.09 0.00 0.00 4.00
3735 6924 2.093606 GGAGGGCTACTGTAGGTGTTTC 60.094 54.545 16.09 0.00 0.00 2.78
3747 6936 2.156051 CTTATCGGCGGGAGGGCTAC 62.156 65.000 7.21 0.00 39.52 3.58
3748 6937 1.906824 CTTATCGGCGGGAGGGCTA 60.907 63.158 7.21 0.00 39.52 3.93
3758 6956 0.244178 GGATCTCGGTCCTTATCGGC 59.756 60.000 0.00 0.00 35.32 5.54
3762 6960 2.558795 CGTGATGGATCTCGGTCCTTAT 59.441 50.000 0.00 0.00 39.36 1.73
3763 6961 1.954382 CGTGATGGATCTCGGTCCTTA 59.046 52.381 0.00 0.00 39.36 2.69
3766 6964 1.300233 GCGTGATGGATCTCGGTCC 60.300 63.158 11.76 0.00 42.20 4.46
3768 6966 1.739338 GAGGCGTGATGGATCTCGGT 61.739 60.000 11.76 0.00 42.20 4.69
3769 6967 1.006805 GAGGCGTGATGGATCTCGG 60.007 63.158 11.76 0.00 42.20 4.63
3795 6993 4.785301 TCTTTCATCTTCCATGGCCTTAG 58.215 43.478 6.96 1.76 0.00 2.18
3796 6994 4.860802 TCTTTCATCTTCCATGGCCTTA 57.139 40.909 6.96 0.00 0.00 2.69
3797 6995 3.744940 TCTTTCATCTTCCATGGCCTT 57.255 42.857 6.96 0.00 0.00 4.35
3798 6996 3.203710 TCATCTTTCATCTTCCATGGCCT 59.796 43.478 6.96 0.00 0.00 5.19
3799 6997 3.559069 TCATCTTTCATCTTCCATGGCC 58.441 45.455 6.96 0.00 0.00 5.36
3800 6998 4.499357 GCTTCATCTTTCATCTTCCATGGC 60.499 45.833 6.96 0.00 0.00 4.40
3801 6999 4.037684 GGCTTCATCTTTCATCTTCCATGG 59.962 45.833 4.97 4.97 0.00 3.66
3802 7000 4.261072 CGGCTTCATCTTTCATCTTCCATG 60.261 45.833 0.00 0.00 0.00 3.66
3803 7001 3.881688 CGGCTTCATCTTTCATCTTCCAT 59.118 43.478 0.00 0.00 0.00 3.41
3804 7002 3.055167 TCGGCTTCATCTTTCATCTTCCA 60.055 43.478 0.00 0.00 0.00 3.53
3805 7003 3.535561 TCGGCTTCATCTTTCATCTTCC 58.464 45.455 0.00 0.00 0.00 3.46
3806 7004 4.213059 GGATCGGCTTCATCTTTCATCTTC 59.787 45.833 0.00 0.00 0.00 2.87
3807 7005 4.133078 GGATCGGCTTCATCTTTCATCTT 58.867 43.478 0.00 0.00 0.00 2.40
3808 7006 3.135348 TGGATCGGCTTCATCTTTCATCT 59.865 43.478 0.00 0.00 0.00 2.90
3809 7007 3.249559 GTGGATCGGCTTCATCTTTCATC 59.750 47.826 0.00 0.00 0.00 2.92
3810 7008 3.209410 GTGGATCGGCTTCATCTTTCAT 58.791 45.455 0.00 0.00 0.00 2.57
3811 7009 2.632377 GTGGATCGGCTTCATCTTTCA 58.368 47.619 0.00 0.00 0.00 2.69
3812 7010 1.594862 CGTGGATCGGCTTCATCTTTC 59.405 52.381 0.00 0.00 35.71 2.62
3813 7011 1.207089 TCGTGGATCGGCTTCATCTTT 59.793 47.619 0.00 0.00 40.32 2.52
3814 7012 0.824109 TCGTGGATCGGCTTCATCTT 59.176 50.000 0.00 0.00 40.32 2.40
3815 7013 1.043816 ATCGTGGATCGGCTTCATCT 58.956 50.000 0.00 0.00 40.32 2.90
3816 7014 1.143305 CATCGTGGATCGGCTTCATC 58.857 55.000 0.00 0.00 40.32 2.92
3840 7038 3.733960 GTTTTGCGCCTCCCGTCC 61.734 66.667 4.18 0.00 39.71 4.79
3946 7145 6.389091 TGCAATTCACACATATTTCCTGAAC 58.611 36.000 0.00 0.00 0.00 3.18
3951 7150 7.092716 AGAACTTGCAATTCACACATATTTCC 58.907 34.615 17.89 0.00 0.00 3.13
3955 7154 9.793252 GAATTAGAACTTGCAATTCACACATAT 57.207 29.630 17.89 4.56 38.16 1.78
3992 7191 1.133915 ACTCCTTCTGACCCGCAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
3993 7192 0.472471 ACTCCTTCTGACCCGCAAAA 59.528 50.000 0.00 0.00 0.00 2.44
3994 7193 1.275291 CTACTCCTTCTGACCCGCAAA 59.725 52.381 0.00 0.00 0.00 3.68
3995 7194 0.895530 CTACTCCTTCTGACCCGCAA 59.104 55.000 0.00 0.00 0.00 4.85
3996 7195 1.605058 GCTACTCCTTCTGACCCGCA 61.605 60.000 0.00 0.00 0.00 5.69
3997 7196 1.142097 GCTACTCCTTCTGACCCGC 59.858 63.158 0.00 0.00 0.00 6.13
3998 7197 0.457851 CAGCTACTCCTTCTGACCCG 59.542 60.000 0.00 0.00 0.00 5.28
3999 7198 0.176910 GCAGCTACTCCTTCTGACCC 59.823 60.000 0.00 0.00 0.00 4.46
4000 7199 1.190643 AGCAGCTACTCCTTCTGACC 58.809 55.000 0.00 0.00 0.00 4.02
4001 7200 4.177783 GTTTAGCAGCTACTCCTTCTGAC 58.822 47.826 0.00 0.00 0.00 3.51
4002 7201 3.195825 GGTTTAGCAGCTACTCCTTCTGA 59.804 47.826 0.00 0.00 0.00 3.27
4010 7209 1.697432 TGTGGTGGTTTAGCAGCTACT 59.303 47.619 0.00 0.00 37.49 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.