Multiple sequence alignment - TraesCS5B01G300200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G300200 chr5B 100.000 3455 0 0 1 3455 485076433 485072979 0.000000e+00 6381.0
1 TraesCS5B01G300200 chr5B 93.238 488 29 3 2969 3455 384549468 384548984 0.000000e+00 715.0
2 TraesCS5B01G300200 chr6D 92.962 952 57 7 1 948 90926670 90927615 0.000000e+00 1378.0
3 TraesCS5B01G300200 chr6D 91.228 969 66 7 4 965 10675439 10674483 0.000000e+00 1301.0
4 TraesCS5B01G300200 chr1D 91.959 970 66 6 1 963 478250302 478249338 0.000000e+00 1349.0
5 TraesCS5B01G300200 chr1D 91.835 943 64 7 1 937 334054138 334053203 0.000000e+00 1303.0
6 TraesCS5B01G300200 chr1D 94.915 59 1 1 2913 2969 86875011 86875069 1.320000e-14 91.6
7 TraesCS5B01G300200 chr7D 92.059 957 63 5 1 949 630613443 630612492 0.000000e+00 1334.0
8 TraesCS5B01G300200 chr7D 90.890 966 71 11 1 957 182600376 182599419 0.000000e+00 1280.0
9 TraesCS5B01G300200 chr7D 88.421 95 10 1 2658 2752 474349146 474349053 2.820000e-21 113.0
10 TraesCS5B01G300200 chr7D 84.685 111 14 3 2653 2762 256187629 256187521 1.310000e-19 108.0
11 TraesCS5B01G300200 chr2D 91.527 956 68 7 1 948 563966759 563965809 0.000000e+00 1304.0
12 TraesCS5B01G300200 chr2D 91.300 954 74 8 1 948 603694892 603693942 0.000000e+00 1293.0
13 TraesCS5B01G300200 chr2D 90.834 971 73 9 1 961 525938903 525939867 0.000000e+00 1286.0
14 TraesCS5B01G300200 chr2D 89.031 547 48 7 2918 3455 465659662 465659119 0.000000e+00 667.0
15 TraesCS5B01G300200 chr2D 88.504 548 49 9 2918 3455 465722738 465722195 0.000000e+00 651.0
16 TraesCS5B01G300200 chr2D 91.860 86 7 0 2658 2743 150380737 150380652 1.680000e-23 121.0
17 TraesCS5B01G300200 chr5A 89.433 653 32 12 954 1572 510184669 510185318 0.000000e+00 789.0
18 TraesCS5B01G300200 chr5A 96.552 435 12 1 2198 2629 510186423 510186857 0.000000e+00 717.0
19 TraesCS5B01G300200 chr5A 83.419 585 33 24 1601 2170 510185767 510186302 5.180000e-133 484.0
20 TraesCS5B01G300200 chr5A 89.247 93 10 0 2657 2749 32836512 32836420 2.180000e-22 117.0
21 TraesCS5B01G300200 chr5A 85.849 106 12 3 2639 2742 622999444 622999340 3.650000e-20 110.0
22 TraesCS5B01G300200 chr5A 100.000 28 0 0 2167 2194 510186377 510186404 6.000000e-03 52.8
23 TraesCS5B01G300200 chr5D 90.659 546 27 14 1031 1567 403561771 403562301 0.000000e+00 704.0
24 TraesCS5B01G300200 chr5D 88.848 538 26 16 2112 2629 403563229 403563752 6.290000e-177 630.0
25 TraesCS5B01G300200 chr5D 86.041 437 30 15 1601 2025 403562765 403563182 1.140000e-119 440.0
26 TraesCS5B01G300200 chr5D 94.915 59 1 1 2913 2969 274898842 274898900 1.320000e-14 91.6
27 TraesCS5B01G300200 chr3B 92.261 491 34 3 2966 3455 581516283 581516770 0.000000e+00 693.0
28 TraesCS5B01G300200 chr3B 91.489 94 5 3 2658 2750 478078439 478078348 3.620000e-25 126.0
29 TraesCS5B01G300200 chr3B 88.542 96 10 1 2658 2752 11069999 11070094 7.840000e-22 115.0
30 TraesCS5B01G300200 chr3B 93.651 63 2 1 2912 2972 324096458 324096396 3.670000e-15 93.5
31 TraesCS5B01G300200 chr2B 92.418 488 33 3 2969 3455 389381321 389380837 0.000000e+00 693.0
32 TraesCS5B01G300200 chr2B 92.276 492 30 6 2966 3455 313328768 313329253 0.000000e+00 691.0
33 TraesCS5B01G300200 chr7B 92.245 490 35 2 2966 3455 402498420 402498906 0.000000e+00 691.0
34 TraesCS5B01G300200 chr7B 94.915 59 1 1 2913 2969 16619118 16619176 1.320000e-14 91.6
35 TraesCS5B01G300200 chr4B 89.483 561 40 6 2911 3455 187664171 187664728 0.000000e+00 691.0
36 TraesCS5B01G300200 chr1B 92.197 487 34 3 2969 3454 219462973 219462490 0.000000e+00 686.0
37 TraesCS5B01G300200 chr1B 94.915 59 1 1 2913 2969 538014460 538014518 1.320000e-14 91.6
38 TraesCS5B01G300200 chr1B 93.548 62 2 1 2913 2972 607061827 607061766 1.320000e-14 91.6
39 TraesCS5B01G300200 chr3A 90.323 93 8 1 2658 2750 489193169 489193078 1.680000e-23 121.0
40 TraesCS5B01G300200 chr3A 89.362 94 7 3 2657 2749 194703967 194703876 7.840000e-22 115.0
41 TraesCS5B01G300200 chr4D 93.548 62 2 1 2913 2972 60703387 60703326 1.320000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G300200 chr5B 485072979 485076433 3454 True 6381.000000 6381 100.000 1 3455 1 chr5B.!!$R2 3454
1 TraesCS5B01G300200 chr6D 90926670 90927615 945 False 1378.000000 1378 92.962 1 948 1 chr6D.!!$F1 947
2 TraesCS5B01G300200 chr6D 10674483 10675439 956 True 1301.000000 1301 91.228 4 965 1 chr6D.!!$R1 961
3 TraesCS5B01G300200 chr1D 478249338 478250302 964 True 1349.000000 1349 91.959 1 963 1 chr1D.!!$R2 962
4 TraesCS5B01G300200 chr1D 334053203 334054138 935 True 1303.000000 1303 91.835 1 937 1 chr1D.!!$R1 936
5 TraesCS5B01G300200 chr7D 630612492 630613443 951 True 1334.000000 1334 92.059 1 949 1 chr7D.!!$R4 948
6 TraesCS5B01G300200 chr7D 182599419 182600376 957 True 1280.000000 1280 90.890 1 957 1 chr7D.!!$R1 956
7 TraesCS5B01G300200 chr2D 563965809 563966759 950 True 1304.000000 1304 91.527 1 948 1 chr2D.!!$R4 947
8 TraesCS5B01G300200 chr2D 603693942 603694892 950 True 1293.000000 1293 91.300 1 948 1 chr2D.!!$R5 947
9 TraesCS5B01G300200 chr2D 525938903 525939867 964 False 1286.000000 1286 90.834 1 961 1 chr2D.!!$F1 960
10 TraesCS5B01G300200 chr2D 465659119 465659662 543 True 667.000000 667 89.031 2918 3455 1 chr2D.!!$R2 537
11 TraesCS5B01G300200 chr2D 465722195 465722738 543 True 651.000000 651 88.504 2918 3455 1 chr2D.!!$R3 537
12 TraesCS5B01G300200 chr5A 510184669 510186857 2188 False 510.700000 789 92.351 954 2629 4 chr5A.!!$F1 1675
13 TraesCS5B01G300200 chr5D 403561771 403563752 1981 False 591.333333 704 88.516 1031 2629 3 chr5D.!!$F2 1598
14 TraesCS5B01G300200 chr4B 187664171 187664728 557 False 691.000000 691 89.483 2911 3455 1 chr4B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 994 0.04109 AAGAAATGGACGGGCCCAAT 59.959 50.0 24.92 9.42 40.04 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2791 3419 0.46729 GGTGCAGGAAGGTGTTTGGA 60.467 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.691609 GCCGATCAAGAGACTTGGATTTT 59.308 43.478 10.84 0.00 0.00 1.82
61 62 2.442236 TCTTTGGAATGCCTGGATCC 57.558 50.000 4.20 4.20 34.31 3.36
62 63 1.640149 TCTTTGGAATGCCTGGATCCA 59.360 47.619 15.27 15.27 41.36 3.41
202 203 3.494924 CGGATGGCATCTATCCAAAGTGA 60.495 47.826 25.48 0.00 43.46 3.41
373 376 4.220382 TGGGATCAAAATGCTTTGGTACAG 59.780 41.667 0.00 0.00 38.13 2.74
374 377 4.220602 GGGATCAAAATGCTTTGGTACAGT 59.779 41.667 0.00 0.00 38.13 3.55
437 440 0.833287 AGCGTGGCCAAGATGTAGAT 59.167 50.000 23.82 0.00 0.00 1.98
465 468 4.030216 TCAGTATGAGCTGTTGGGACATA 58.970 43.478 0.00 0.00 42.56 2.29
498 501 3.650950 GGAGGGCTGCAAGGGTCA 61.651 66.667 0.50 0.00 0.00 4.02
499 502 2.679716 GAGGGCTGCAAGGGTCAT 59.320 61.111 0.50 0.00 0.00 3.06
513 516 0.386731 GGTCATCCGTTTTGTTGCCG 60.387 55.000 0.00 0.00 0.00 5.69
573 576 6.383436 TGATCTTCAGAAGGATCTCATTGAGT 59.617 38.462 13.23 1.42 39.09 3.41
580 583 6.322456 CAGAAGGATCTCATTGAGTAGTGGTA 59.678 42.308 13.23 0.00 32.03 3.25
627 630 2.157474 TCATGATTTGTGCGTTCGACAG 59.843 45.455 0.00 0.00 0.00 3.51
786 796 8.791327 TCTTCTGTTTTGAGATGCATATGTTA 57.209 30.769 0.00 0.00 0.00 2.41
851 867 1.443533 GGCGCGTGCTGCATTTTAA 60.444 52.632 21.89 0.00 46.97 1.52
927 944 1.753956 CAAAGCAGTTTTTAGCGCGT 58.246 45.000 8.43 0.00 35.48 6.01
965 985 5.645497 ACTGTTGATGCTCTAAGAAATGGAC 59.355 40.000 0.00 0.00 0.00 4.02
966 986 4.631377 TGTTGATGCTCTAAGAAATGGACG 59.369 41.667 0.00 0.00 0.00 4.79
968 988 2.691409 TGCTCTAAGAAATGGACGGG 57.309 50.000 0.00 0.00 0.00 5.28
974 994 0.041090 AAGAAATGGACGGGCCCAAT 59.959 50.000 24.92 9.42 40.04 3.16
977 997 1.886542 GAAATGGACGGGCCCAATATC 59.113 52.381 24.92 13.15 40.04 1.63
989 1009 0.601841 CCAATATCGTACGGCCACCC 60.602 60.000 16.52 0.00 0.00 4.61
1025 1046 1.540407 CAGAAGCTAGTCTCGCGTTC 58.460 55.000 5.77 0.00 0.00 3.95
1026 1047 1.135660 CAGAAGCTAGTCTCGCGTTCA 60.136 52.381 5.77 0.00 0.00 3.18
1027 1048 1.135632 AGAAGCTAGTCTCGCGTTCAC 60.136 52.381 5.77 0.90 0.00 3.18
1028 1049 0.454620 AAGCTAGTCTCGCGTTCACG 60.455 55.000 5.77 0.00 43.27 4.35
1165 1204 0.163788 CACGCCTACTCAAGCAAACG 59.836 55.000 0.00 0.00 0.00 3.60
1187 1226 1.839994 ACGATCCATCCATCCACAACT 59.160 47.619 0.00 0.00 0.00 3.16
1212 1251 0.601057 CAAACCAATCCGACCAACCC 59.399 55.000 0.00 0.00 0.00 4.11
1213 1252 0.541063 AAACCAATCCGACCAACCCC 60.541 55.000 0.00 0.00 0.00 4.95
1413 1455 0.109342 CTGCTGGGAGCGGGATAAAT 59.891 55.000 0.00 0.00 46.26 1.40
1509 1557 2.203877 TGCCGGTACAGTTCCCCT 60.204 61.111 1.90 0.00 0.00 4.79
1558 1615 1.398958 TTTGGTGGTGCAAGAAGCCC 61.399 55.000 0.00 0.00 44.83 5.19
1594 1992 4.354587 GCCTCTGCATAGAAATTTTTCCG 58.645 43.478 0.00 0.00 36.22 4.30
1597 1995 5.123820 CCTCTGCATAGAAATTTTTCCGTCA 59.876 40.000 0.00 0.00 37.92 4.35
1664 2158 6.884280 AGTTGATTAAAGGTTTGAGTGGAG 57.116 37.500 0.00 0.00 0.00 3.86
1666 2160 6.833933 AGTTGATTAAAGGTTTGAGTGGAGTT 59.166 34.615 0.00 0.00 0.00 3.01
1667 2161 6.633500 TGATTAAAGGTTTGAGTGGAGTTG 57.367 37.500 0.00 0.00 0.00 3.16
1685 2179 6.705381 TGGAGTTGGCAAGAACAATAAATTTG 59.295 34.615 0.00 0.00 0.00 2.32
1686 2180 6.928492 GGAGTTGGCAAGAACAATAAATTTGA 59.072 34.615 0.00 0.00 0.00 2.69
1687 2181 7.095649 GGAGTTGGCAAGAACAATAAATTTGAC 60.096 37.037 0.00 0.00 0.00 3.18
1688 2182 7.271511 AGTTGGCAAGAACAATAAATTTGACA 58.728 30.769 0.00 0.00 35.13 3.58
1691 2185 8.674263 TGGCAAGAACAATAAATTTGACAATT 57.326 26.923 0.00 0.00 34.09 2.32
1692 2186 8.557864 TGGCAAGAACAATAAATTTGACAATTG 58.442 29.630 3.24 3.24 34.09 2.32
1693 2187 8.772705 GGCAAGAACAATAAATTTGACAATTGA 58.227 29.630 13.59 0.00 32.57 2.57
1726 2227 1.903404 CCTCCCAAGTTGGTGTGCC 60.903 63.158 20.54 0.00 35.17 5.01
1740 2241 5.652994 TGGTGTGCCAAGGAAATTTATAC 57.347 39.130 0.00 0.00 42.83 1.47
1741 2242 5.080337 TGGTGTGCCAAGGAAATTTATACA 58.920 37.500 0.00 0.00 42.83 2.29
1742 2243 5.184864 TGGTGTGCCAAGGAAATTTATACAG 59.815 40.000 0.00 0.00 42.83 2.74
1743 2244 5.102313 GTGTGCCAAGGAAATTTATACAGC 58.898 41.667 0.00 0.00 0.00 4.40
1744 2245 5.016173 TGTGCCAAGGAAATTTATACAGCT 58.984 37.500 0.00 0.00 0.00 4.24
1745 2246 6.094881 GTGTGCCAAGGAAATTTATACAGCTA 59.905 38.462 0.00 0.00 0.00 3.32
1746 2247 6.833416 TGTGCCAAGGAAATTTATACAGCTAT 59.167 34.615 0.00 0.00 0.00 2.97
1747 2248 7.996066 TGTGCCAAGGAAATTTATACAGCTATA 59.004 33.333 0.00 0.00 0.00 1.31
1748 2249 9.014297 GTGCCAAGGAAATTTATACAGCTATAT 57.986 33.333 0.00 0.00 0.00 0.86
1749 2250 9.013229 TGCCAAGGAAATTTATACAGCTATATG 57.987 33.333 0.00 0.00 0.00 1.78
1750 2251 7.970614 GCCAAGGAAATTTATACAGCTATATGC 59.029 37.037 0.00 0.00 43.29 3.14
1792 2294 9.166173 CAGTAACTGAATTGATCCTATGAACAA 57.834 33.333 0.00 0.00 34.34 2.83
1797 2299 9.028284 ACTGAATTGATCCTATGAACAACAAAT 57.972 29.630 0.00 0.00 36.28 2.32
1798 2300 9.865321 CTGAATTGATCCTATGAACAACAAATT 57.135 29.630 0.00 0.00 36.28 1.82
1831 2333 6.150474 CCTTAGAATCGCCAAAGGTAGAAAAA 59.850 38.462 0.00 0.00 34.92 1.94
1832 2334 5.372547 AGAATCGCCAAAGGTAGAAAAAC 57.627 39.130 0.00 0.00 0.00 2.43
1833 2335 4.217767 AGAATCGCCAAAGGTAGAAAAACC 59.782 41.667 0.00 0.00 40.06 3.27
1889 2391 6.384258 TGTACATGTTTTGTGCACTGTTAT 57.616 33.333 19.41 3.53 44.69 1.89
1890 2392 7.497925 TGTACATGTTTTGTGCACTGTTATA 57.502 32.000 19.41 0.53 44.69 0.98
1891 2393 7.356540 TGTACATGTTTTGTGCACTGTTATAC 58.643 34.615 19.41 8.45 44.69 1.47
1892 2394 5.448438 ACATGTTTTGTGCACTGTTATACG 58.552 37.500 19.41 3.21 37.11 3.06
1938 2440 2.158986 CCTGATACTGTTGCTCTCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
1984 2492 4.783055 TGTTGCTGTTGGTTAACCTTCTA 58.217 39.130 24.78 1.99 35.92 2.10
2050 2562 8.408043 AAAATGTTCAGATGAATTACCAGTCA 57.592 30.769 0.00 0.00 36.33 3.41
2051 2563 8.585471 AAATGTTCAGATGAATTACCAGTCAT 57.415 30.769 0.00 0.00 40.47 3.06
2052 2564 6.990341 TGTTCAGATGAATTACCAGTCATG 57.010 37.500 0.00 0.00 37.85 3.07
2053 2565 5.355071 TGTTCAGATGAATTACCAGTCATGC 59.645 40.000 0.00 0.00 37.85 4.06
2094 2606 3.899734 TCATCCAAAACAATTGCACTCG 58.100 40.909 5.05 0.00 0.00 4.18
2100 2612 6.607689 TCCAAAACAATTGCACTCGTATAAG 58.392 36.000 5.05 0.00 0.00 1.73
2101 2613 5.799936 CCAAAACAATTGCACTCGTATAAGG 59.200 40.000 5.05 0.00 0.00 2.69
2102 2614 6.378582 CAAAACAATTGCACTCGTATAAGGT 58.621 36.000 5.05 0.00 0.00 3.50
2103 2615 7.361371 CCAAAACAATTGCACTCGTATAAGGTA 60.361 37.037 5.05 0.00 0.00 3.08
2104 2616 7.859325 AAACAATTGCACTCGTATAAGGTAT 57.141 32.000 5.05 0.00 0.00 2.73
2105 2617 8.951787 AAACAATTGCACTCGTATAAGGTATA 57.048 30.769 5.05 0.00 0.00 1.47
2106 2618 8.951787 AACAATTGCACTCGTATAAGGTATAA 57.048 30.769 5.05 0.00 0.00 0.98
2107 2619 8.361592 ACAATTGCACTCGTATAAGGTATAAC 57.638 34.615 5.05 0.00 0.00 1.89
2108 2620 8.202137 ACAATTGCACTCGTATAAGGTATAACT 58.798 33.333 5.05 0.00 0.00 2.24
2109 2621 8.487970 CAATTGCACTCGTATAAGGTATAACTG 58.512 37.037 0.00 0.00 0.00 3.16
2110 2622 6.704289 TGCACTCGTATAAGGTATAACTGT 57.296 37.500 0.00 0.00 0.00 3.55
2111 2623 7.806409 TGCACTCGTATAAGGTATAACTGTA 57.194 36.000 0.00 0.00 0.00 2.74
2112 2624 7.642669 TGCACTCGTATAAGGTATAACTGTAC 58.357 38.462 0.00 0.00 0.00 2.90
2113 2625 7.500227 TGCACTCGTATAAGGTATAACTGTACT 59.500 37.037 10.29 0.00 0.00 2.73
2114 2626 8.014517 GCACTCGTATAAGGTATAACTGTACTC 58.985 40.741 10.29 0.00 0.00 2.59
2115 2627 9.270640 CACTCGTATAAGGTATAACTGTACTCT 57.729 37.037 10.29 0.00 0.00 3.24
2116 2628 9.270640 ACTCGTATAAGGTATAACTGTACTCTG 57.729 37.037 10.29 4.94 0.00 3.35
2117 2629 9.270640 CTCGTATAAGGTATAACTGTACTCTGT 57.729 37.037 10.29 0.00 0.00 3.41
2118 2630 9.618890 TCGTATAAGGTATAACTGTACTCTGTT 57.381 33.333 10.29 0.00 38.76 3.16
2119 2631 9.661187 CGTATAAGGTATAACTGTACTCTGTTG 57.339 37.037 10.29 0.00 37.09 3.33
2130 2642 1.590932 ACTCTGTTGCTGCTGAACTG 58.409 50.000 0.00 2.46 0.00 3.16
2164 2676 2.100605 AGCTGAATCCCAGTTCGTTC 57.899 50.000 0.00 0.00 44.71 3.95
2284 2909 7.653311 GGAATACTTGATTTGCATACCATTTCC 59.347 37.037 0.00 0.00 0.00 3.13
2291 2916 4.433186 TTGCATACCATTTCCAAGTTCG 57.567 40.909 0.00 0.00 0.00 3.95
2430 3055 3.057596 ACAAAGCAACGGGTGATAATGTG 60.058 43.478 0.00 0.00 28.07 3.21
2433 3058 0.738389 CAACGGGTGATAATGTGGGC 59.262 55.000 0.00 0.00 0.00 5.36
2437 3062 1.152546 GGTGATAATGTGGGCCCCC 60.153 63.158 22.27 8.90 0.00 5.40
2527 3152 6.305399 TCGTAGTTGGTATAACGTTTTTCTCG 59.695 38.462 5.91 0.00 36.73 4.04
2529 3154 7.008628 CGTAGTTGGTATAACGTTTTTCTCGAT 59.991 37.037 5.91 0.00 0.00 3.59
2596 3224 5.065731 AGCAGAATTAAGAGAGAAATTGCCG 59.934 40.000 0.00 0.00 0.00 5.69
2629 3257 9.709495 AAAGCAAAATAAGTATCATTTCTGCAA 57.291 25.926 12.76 0.00 34.93 4.08
2630 3258 9.880157 AAGCAAAATAAGTATCATTTCTGCAAT 57.120 25.926 12.76 0.00 34.93 3.56
2631 3259 9.525409 AGCAAAATAAGTATCATTTCTGCAATC 57.475 29.630 12.76 0.00 34.93 2.67
2632 3260 9.304731 GCAAAATAAGTATCATTTCTGCAATCA 57.695 29.630 0.00 0.00 33.93 2.57
2634 3262 9.525409 AAAATAAGTATCATTTCTGCAATCAGC 57.475 29.630 0.00 0.00 45.96 4.26
2651 3279 8.498192 GCAATCAGCACATATTACATTTGTAG 57.502 34.615 0.00 0.00 44.79 2.74
2652 3280 8.131100 GCAATCAGCACATATTACATTTGTAGT 58.869 33.333 0.00 0.00 44.79 2.73
2653 3281 9.442033 CAATCAGCACATATTACATTTGTAGTG 57.558 33.333 0.00 0.00 0.00 2.74
2654 3282 8.737168 ATCAGCACATATTACATTTGTAGTGT 57.263 30.769 8.64 5.32 30.41 3.55
2655 3283 8.196802 TCAGCACATATTACATTTGTAGTGTC 57.803 34.615 8.64 3.70 30.41 3.67
2656 3284 7.279981 TCAGCACATATTACATTTGTAGTGTCC 59.720 37.037 8.64 0.56 30.41 4.02
2657 3285 7.280876 CAGCACATATTACATTTGTAGTGTCCT 59.719 37.037 8.64 2.26 30.41 3.85
2658 3286 8.482943 AGCACATATTACATTTGTAGTGTCCTA 58.517 33.333 8.64 0.00 30.41 2.94
2659 3287 8.548721 GCACATATTACATTTGTAGTGTCCTAC 58.451 37.037 8.64 0.00 43.30 3.18
2660 3288 9.817809 CACATATTACATTTGTAGTGTCCTACT 57.182 33.333 1.99 0.00 43.38 2.57
2662 3290 9.477484 CATATTACATTTGTAGTGTCCTACTCC 57.523 37.037 1.99 0.00 43.38 3.85
2663 3291 4.820894 ACATTTGTAGTGTCCTACTCCC 57.179 45.455 1.99 0.00 43.38 4.30
2664 3292 4.426704 ACATTTGTAGTGTCCTACTCCCT 58.573 43.478 1.99 0.00 43.38 4.20
2665 3293 4.466726 ACATTTGTAGTGTCCTACTCCCTC 59.533 45.833 1.99 0.00 43.38 4.30
2666 3294 4.399483 TTTGTAGTGTCCTACTCCCTCT 57.601 45.455 1.99 0.00 43.38 3.69
2667 3295 3.367646 TGTAGTGTCCTACTCCCTCTG 57.632 52.381 1.99 0.00 43.38 3.35
2668 3296 2.648304 TGTAGTGTCCTACTCCCTCTGT 59.352 50.000 1.99 0.00 43.38 3.41
2669 3297 3.848377 TGTAGTGTCCTACTCCCTCTGTA 59.152 47.826 1.99 0.00 43.38 2.74
2670 3298 4.290459 TGTAGTGTCCTACTCCCTCTGTAA 59.710 45.833 1.99 0.00 43.38 2.41
2671 3299 4.399483 AGTGTCCTACTCCCTCTGTAAA 57.601 45.455 0.00 0.00 33.17 2.01
2672 3300 4.345854 AGTGTCCTACTCCCTCTGTAAAG 58.654 47.826 0.00 0.00 33.17 1.85
2673 3301 4.044317 AGTGTCCTACTCCCTCTGTAAAGA 59.956 45.833 0.00 0.00 33.17 2.52
2674 3302 4.771054 GTGTCCTACTCCCTCTGTAAAGAA 59.229 45.833 0.00 0.00 0.00 2.52
2675 3303 5.245526 GTGTCCTACTCCCTCTGTAAAGAAA 59.754 44.000 0.00 0.00 0.00 2.52
2676 3304 6.023603 TGTCCTACTCCCTCTGTAAAGAAAT 58.976 40.000 0.00 0.00 0.00 2.17
2677 3305 7.123847 GTGTCCTACTCCCTCTGTAAAGAAATA 59.876 40.741 0.00 0.00 0.00 1.40
2678 3306 7.844779 TGTCCTACTCCCTCTGTAAAGAAATAT 59.155 37.037 0.00 0.00 0.00 1.28
2679 3307 9.364653 GTCCTACTCCCTCTGTAAAGAAATATA 57.635 37.037 0.00 0.00 0.00 0.86
2680 3308 9.947189 TCCTACTCCCTCTGTAAAGAAATATAA 57.053 33.333 0.00 0.00 0.00 0.98
2684 3312 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2685 3313 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2686 3314 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2687 3315 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2688 3316 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2689 3317 9.907576 CTCTGTAAAGAAATATAAGAGCGTTTG 57.092 33.333 0.00 0.00 0.00 2.93
2690 3318 8.879759 TCTGTAAAGAAATATAAGAGCGTTTGG 58.120 33.333 0.00 0.00 0.00 3.28
2691 3319 8.780846 TGTAAAGAAATATAAGAGCGTTTGGA 57.219 30.769 0.00 0.00 0.00 3.53
2692 3320 9.391006 TGTAAAGAAATATAAGAGCGTTTGGAT 57.609 29.630 0.00 0.00 0.00 3.41
2693 3321 9.865484 GTAAAGAAATATAAGAGCGTTTGGATC 57.135 33.333 0.00 0.00 0.00 3.36
2694 3322 8.506168 AAAGAAATATAAGAGCGTTTGGATCA 57.494 30.769 0.00 0.00 32.03 2.92
2695 3323 8.682936 AAGAAATATAAGAGCGTTTGGATCAT 57.317 30.769 0.00 0.00 32.03 2.45
2696 3324 8.092521 AGAAATATAAGAGCGTTTGGATCATG 57.907 34.615 0.00 0.00 32.03 3.07
2697 3325 7.933577 AGAAATATAAGAGCGTTTGGATCATGA 59.066 33.333 0.00 0.00 32.03 3.07
2698 3326 8.450578 AAATATAAGAGCGTTTGGATCATGAA 57.549 30.769 0.00 0.00 32.03 2.57
2699 3327 8.627208 AATATAAGAGCGTTTGGATCATGAAT 57.373 30.769 0.00 0.00 32.03 2.57
2700 3328 4.627611 AAGAGCGTTTGGATCATGAATG 57.372 40.909 0.00 0.00 32.03 2.67
2701 3329 2.357009 AGAGCGTTTGGATCATGAATGC 59.643 45.455 0.00 0.00 35.95 3.56
2702 3330 2.093890 AGCGTTTGGATCATGAATGCA 58.906 42.857 16.46 0.00 37.67 3.96
2703 3331 2.098607 AGCGTTTGGATCATGAATGCAG 59.901 45.455 16.46 0.00 37.00 4.41
2704 3332 2.159338 GCGTTTGGATCATGAATGCAGT 60.159 45.455 0.00 0.00 37.00 4.40
2705 3333 3.431856 CGTTTGGATCATGAATGCAGTG 58.568 45.455 0.00 0.00 37.00 3.66
2706 3334 3.127376 CGTTTGGATCATGAATGCAGTGA 59.873 43.478 0.00 0.00 37.00 3.41
2707 3335 4.201980 CGTTTGGATCATGAATGCAGTGAT 60.202 41.667 0.00 0.00 37.00 3.06
2708 3336 5.279384 GTTTGGATCATGAATGCAGTGATC 58.721 41.667 18.44 18.44 44.64 2.92
2709 3337 4.432980 TGGATCATGAATGCAGTGATCT 57.567 40.909 22.48 0.94 44.71 2.75
2710 3338 5.556006 TGGATCATGAATGCAGTGATCTA 57.444 39.130 22.48 17.91 44.71 1.98
2711 3339 5.932455 TGGATCATGAATGCAGTGATCTAA 58.068 37.500 22.48 14.30 44.71 2.10
2712 3340 6.358991 TGGATCATGAATGCAGTGATCTAAA 58.641 36.000 22.48 12.74 44.71 1.85
2713 3341 6.261603 TGGATCATGAATGCAGTGATCTAAAC 59.738 38.462 22.48 13.00 44.71 2.01
2714 3342 5.723492 TCATGAATGCAGTGATCTAAACG 57.277 39.130 0.00 0.00 0.00 3.60
2715 3343 4.034394 TCATGAATGCAGTGATCTAAACGC 59.966 41.667 0.00 0.00 0.00 4.84
2716 3344 3.599343 TGAATGCAGTGATCTAAACGCT 58.401 40.909 0.00 0.00 0.00 5.07
2717 3345 3.618594 TGAATGCAGTGATCTAAACGCTC 59.381 43.478 0.00 0.00 0.00 5.03
2718 3346 3.533606 ATGCAGTGATCTAAACGCTCT 57.466 42.857 0.00 0.00 0.00 4.09
2719 3347 3.319137 TGCAGTGATCTAAACGCTCTT 57.681 42.857 0.00 0.00 0.00 2.85
2720 3348 4.450082 TGCAGTGATCTAAACGCTCTTA 57.550 40.909 0.00 0.00 0.00 2.10
2721 3349 5.011090 TGCAGTGATCTAAACGCTCTTAT 57.989 39.130 0.00 0.00 0.00 1.73
2722 3350 6.144078 TGCAGTGATCTAAACGCTCTTATA 57.856 37.500 0.00 0.00 0.00 0.98
2723 3351 6.749139 TGCAGTGATCTAAACGCTCTTATAT 58.251 36.000 0.00 0.00 0.00 0.86
2724 3352 7.210174 TGCAGTGATCTAAACGCTCTTATATT 58.790 34.615 0.00 0.00 0.00 1.28
2725 3353 7.710907 TGCAGTGATCTAAACGCTCTTATATTT 59.289 33.333 0.00 0.00 0.00 1.40
2726 3354 8.217778 GCAGTGATCTAAACGCTCTTATATTTC 58.782 37.037 0.00 0.00 0.00 2.17
2727 3355 9.469807 CAGTGATCTAAACGCTCTTATATTTCT 57.530 33.333 0.00 0.00 0.00 2.52
2736 3364 7.721286 ACGCTCTTATATTTCTTCATGAAGG 57.279 36.000 30.33 14.79 38.88 3.46
2737 3365 6.708054 ACGCTCTTATATTTCTTCATGAAGGG 59.292 38.462 30.33 14.86 38.88 3.95
2738 3366 6.931281 CGCTCTTATATTTCTTCATGAAGGGA 59.069 38.462 30.33 20.74 38.88 4.20
2739 3367 7.117523 CGCTCTTATATTTCTTCATGAAGGGAG 59.882 40.741 30.33 22.22 38.88 4.30
2740 3368 7.936301 GCTCTTATATTTCTTCATGAAGGGAGT 59.064 37.037 30.33 19.45 38.88 3.85
2746 3374 9.927081 ATATTTCTTCATGAAGGGAGTATGTTT 57.073 29.630 30.33 9.08 38.88 2.83
2747 3375 8.655935 ATTTCTTCATGAAGGGAGTATGTTTT 57.344 30.769 30.33 4.24 38.88 2.43
2748 3376 8.477419 TTTCTTCATGAAGGGAGTATGTTTTT 57.523 30.769 30.33 0.00 38.88 1.94
2749 3377 7.452880 TCTTCATGAAGGGAGTATGTTTTTG 57.547 36.000 30.33 4.94 38.88 2.44
2750 3378 7.230747 TCTTCATGAAGGGAGTATGTTTTTGA 58.769 34.615 30.33 7.13 38.88 2.69
2751 3379 7.890127 TCTTCATGAAGGGAGTATGTTTTTGAT 59.110 33.333 30.33 0.00 38.88 2.57
2752 3380 9.177608 CTTCATGAAGGGAGTATGTTTTTGATA 57.822 33.333 25.14 0.00 34.87 2.15
2753 3381 9.527157 TTCATGAAGGGAGTATGTTTTTGATAA 57.473 29.630 3.38 0.00 0.00 1.75
2754 3382 9.699410 TCATGAAGGGAGTATGTTTTTGATAAT 57.301 29.630 0.00 0.00 0.00 1.28
2787 3415 7.105241 AGGATGCATTAAGGAAGAATGAAAC 57.895 36.000 0.00 0.00 36.57 2.78
2788 3416 6.894103 AGGATGCATTAAGGAAGAATGAAACT 59.106 34.615 0.00 0.00 36.57 2.66
2789 3417 6.976925 GGATGCATTAAGGAAGAATGAAACTG 59.023 38.462 0.00 0.00 36.57 3.16
2790 3418 5.713025 TGCATTAAGGAAGAATGAAACTGC 58.287 37.500 0.00 0.00 36.57 4.40
2791 3419 5.477984 TGCATTAAGGAAGAATGAAACTGCT 59.522 36.000 0.00 0.00 36.57 4.24
2792 3420 6.032717 GCATTAAGGAAGAATGAAACTGCTC 58.967 40.000 0.00 0.00 36.57 4.26
2793 3421 6.558909 CATTAAGGAAGAATGAAACTGCTCC 58.441 40.000 0.00 0.00 36.57 4.70
2794 3422 3.795688 AGGAAGAATGAAACTGCTCCA 57.204 42.857 0.00 0.00 0.00 3.86
2795 3423 4.104383 AGGAAGAATGAAACTGCTCCAA 57.896 40.909 0.00 0.00 0.00 3.53
2796 3424 4.473444 AGGAAGAATGAAACTGCTCCAAA 58.527 39.130 0.00 0.00 0.00 3.28
2797 3425 4.279420 AGGAAGAATGAAACTGCTCCAAAC 59.721 41.667 0.00 0.00 0.00 2.93
2798 3426 4.037923 GGAAGAATGAAACTGCTCCAAACA 59.962 41.667 0.00 0.00 0.00 2.83
2799 3427 4.574599 AGAATGAAACTGCTCCAAACAC 57.425 40.909 0.00 0.00 0.00 3.32
2800 3428 3.319122 AGAATGAAACTGCTCCAAACACC 59.681 43.478 0.00 0.00 0.00 4.16
2801 3429 2.435372 TGAAACTGCTCCAAACACCT 57.565 45.000 0.00 0.00 0.00 4.00
2802 3430 2.733956 TGAAACTGCTCCAAACACCTT 58.266 42.857 0.00 0.00 0.00 3.50
2803 3431 2.687935 TGAAACTGCTCCAAACACCTTC 59.312 45.455 0.00 0.00 0.00 3.46
2804 3432 1.692411 AACTGCTCCAAACACCTTCC 58.308 50.000 0.00 0.00 0.00 3.46
2805 3433 0.846693 ACTGCTCCAAACACCTTCCT 59.153 50.000 0.00 0.00 0.00 3.36
2806 3434 1.242076 CTGCTCCAAACACCTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
2807 3435 0.823356 TGCTCCAAACACCTTCCTGC 60.823 55.000 0.00 0.00 0.00 4.85
2808 3436 0.823356 GCTCCAAACACCTTCCTGCA 60.823 55.000 0.00 0.00 0.00 4.41
2809 3437 0.954452 CTCCAAACACCTTCCTGCAC 59.046 55.000 0.00 0.00 0.00 4.57
2810 3438 0.467290 TCCAAACACCTTCCTGCACC 60.467 55.000 0.00 0.00 0.00 5.01
2811 3439 1.463553 CCAAACACCTTCCTGCACCC 61.464 60.000 0.00 0.00 0.00 4.61
2812 3440 1.528309 AAACACCTTCCTGCACCCG 60.528 57.895 0.00 0.00 0.00 5.28
2813 3441 4.643387 ACACCTTCCTGCACCCGC 62.643 66.667 0.00 0.00 39.24 6.13
2856 3484 3.218227 GGAGGAACCCTACTCGCC 58.782 66.667 0.00 0.00 31.76 5.54
2857 3485 2.783288 GGAGGAACCCTACTCGCCG 61.783 68.421 0.00 0.00 31.76 6.46
2858 3486 3.427598 GAGGAACCCTACTCGCCGC 62.428 68.421 0.00 0.00 31.76 6.53
2859 3487 4.525949 GGAACCCTACTCGCCGCC 62.526 72.222 0.00 0.00 0.00 6.13
2860 3488 4.867599 GAACCCTACTCGCCGCCG 62.868 72.222 0.00 0.00 0.00 6.46
2878 3506 4.354943 CCCACCCACCCTCCCTCT 62.355 72.222 0.00 0.00 0.00 3.69
2879 3507 2.689034 CCACCCACCCTCCCTCTC 60.689 72.222 0.00 0.00 0.00 3.20
2880 3508 2.689034 CACCCACCCTCCCTCTCC 60.689 72.222 0.00 0.00 0.00 3.71
2881 3509 2.876858 ACCCACCCTCCCTCTCCT 60.877 66.667 0.00 0.00 0.00 3.69
2882 3510 2.366167 CCCACCCTCCCTCTCCTG 60.366 72.222 0.00 0.00 0.00 3.86
2883 3511 2.366167 CCACCCTCCCTCTCCTGG 60.366 72.222 0.00 0.00 0.00 4.45
2884 3512 3.086600 CACCCTCCCTCTCCTGGC 61.087 72.222 0.00 0.00 0.00 4.85
2885 3513 3.288381 ACCCTCCCTCTCCTGGCT 61.288 66.667 0.00 0.00 0.00 4.75
2886 3514 2.767496 CCCTCCCTCTCCTGGCTG 60.767 72.222 0.00 0.00 0.00 4.85
2887 3515 3.478274 CCTCCCTCTCCTGGCTGC 61.478 72.222 0.00 0.00 0.00 5.25
2888 3516 3.478274 CTCCCTCTCCTGGCTGCC 61.478 72.222 12.87 12.87 0.00 4.85
2891 3519 3.013932 CCTCTCCTGGCTGCCCTT 61.014 66.667 17.53 0.00 0.00 3.95
2892 3520 2.588989 CTCTCCTGGCTGCCCTTC 59.411 66.667 17.53 0.00 0.00 3.46
2893 3521 3.011517 TCTCCTGGCTGCCCTTCC 61.012 66.667 17.53 0.00 0.00 3.46
2894 3522 4.120755 CTCCTGGCTGCCCTTCCC 62.121 72.222 17.53 0.00 0.00 3.97
2895 3523 4.682714 TCCTGGCTGCCCTTCCCT 62.683 66.667 17.53 0.00 0.00 4.20
2896 3524 4.437587 CCTGGCTGCCCTTCCCTG 62.438 72.222 17.53 0.00 0.00 4.45
2897 3525 3.655211 CTGGCTGCCCTTCCCTGT 61.655 66.667 17.53 0.00 0.00 4.00
2898 3526 3.635268 CTGGCTGCCCTTCCCTGTC 62.635 68.421 17.53 0.00 0.00 3.51
2899 3527 4.785453 GGCTGCCCTTCCCTGTCG 62.785 72.222 7.66 0.00 0.00 4.35
2900 3528 3.706373 GCTGCCCTTCCCTGTCGA 61.706 66.667 0.00 0.00 0.00 4.20
2901 3529 2.266055 CTGCCCTTCCCTGTCGAC 59.734 66.667 9.11 9.11 0.00 4.20
2902 3530 3.649277 CTGCCCTTCCCTGTCGACG 62.649 68.421 11.62 5.76 0.00 5.12
2904 3532 3.691342 CCCTTCCCTGTCGACGCA 61.691 66.667 11.62 0.00 0.00 5.24
2905 3533 2.125912 CCTTCCCTGTCGACGCAG 60.126 66.667 11.62 3.40 36.31 5.18
2906 3534 2.636412 CCTTCCCTGTCGACGCAGA 61.636 63.158 11.62 4.05 38.70 4.26
2907 3535 1.153939 CTTCCCTGTCGACGCAGAG 60.154 63.158 11.62 2.13 38.70 3.35
2908 3536 3.282745 TTCCCTGTCGACGCAGAGC 62.283 63.158 11.62 0.00 38.70 4.09
2942 3570 2.187958 CCCTGATCCTAAGTCACACCA 58.812 52.381 0.00 0.00 0.00 4.17
2945 3573 4.408921 CCCTGATCCTAAGTCACACCAATA 59.591 45.833 0.00 0.00 0.00 1.90
2997 3640 1.151172 CCGTTTGCGCTTTTTGGCTT 61.151 50.000 9.73 0.00 36.67 4.35
3012 3655 9.199982 GCTTTTTGGCTTACGTATATGATAGTA 57.800 33.333 0.00 0.00 0.00 1.82
3033 3676 1.472201 CGCCGCTAGCATCCATATGAT 60.472 52.381 16.45 0.00 44.04 2.45
3040 3683 6.765036 CCGCTAGCATCCATATGATAAAGAAT 59.235 38.462 16.45 0.00 33.75 2.40
3045 3688 6.070021 AGCATCCATATGATAAAGAATCCGGA 60.070 38.462 6.61 6.61 34.84 5.14
3054 3697 2.698855 AAGAATCCGGACTGACATGG 57.301 50.000 6.12 0.00 0.00 3.66
3061 3704 0.817654 CGGACTGACATGGCTAGTCA 59.182 55.000 23.79 0.00 43.23 3.41
3096 3739 2.677037 GCGCTAACTTACAGGGACATGT 60.677 50.000 0.00 0.00 37.19 3.21
3100 3743 6.688578 CGCTAACTTACAGGGACATGTATAT 58.311 40.000 0.00 0.00 35.65 0.86
3155 3802 1.873698 TGAACCCAAGTCGTAGCAAC 58.126 50.000 0.00 0.00 0.00 4.17
3172 3819 5.499004 AGCAACCTACATGGACTTAAAGA 57.501 39.130 0.00 0.00 39.71 2.52
3194 3841 1.313772 CAACGTGTGACATTTCCCCA 58.686 50.000 0.00 0.00 0.00 4.96
3215 3862 0.321671 AGGGACAGACACATGAACGG 59.678 55.000 0.00 0.00 0.00 4.44
3253 3900 0.608640 CAGCCTAAGTGTTCCGGAGT 59.391 55.000 3.34 0.00 0.00 3.85
3285 3932 1.030488 CCATGGCTCAGTGGAAGCAG 61.030 60.000 0.00 0.00 37.72 4.24
3329 3976 3.525199 AGAGGCTACCAAGGATGAACAAT 59.475 43.478 0.00 0.00 0.00 2.71
3432 4081 6.183360 GCATCACAACATAACTCTACAACTCC 60.183 42.308 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
413 416 2.446435 ACATCTTGGCCACGCTTATTT 58.554 42.857 3.88 0.00 0.00 1.40
417 420 0.613260 TCTACATCTTGGCCACGCTT 59.387 50.000 3.88 0.00 0.00 4.68
490 493 2.862140 GCAACAAAACGGATGACCCTTG 60.862 50.000 0.00 0.00 0.00 3.61
498 501 0.606944 TAGGCGGCAACAAAACGGAT 60.607 50.000 13.08 0.00 0.00 4.18
499 502 1.227883 TAGGCGGCAACAAAACGGA 60.228 52.632 13.08 0.00 0.00 4.69
513 516 1.498865 CGTCGAATGGCATGGTAGGC 61.499 60.000 0.00 0.00 0.00 3.93
573 576 4.473196 TCTTTCATTCCATGCCTACCACTA 59.527 41.667 0.00 0.00 0.00 2.74
580 583 4.410099 TCTTTGTCTTTCATTCCATGCCT 58.590 39.130 0.00 0.00 0.00 4.75
594 597 5.621555 GCACAAATCATGATGCTCTTTGTCT 60.622 40.000 17.40 0.44 37.80 3.41
627 630 8.850454 ACACAACAAATAGTTCAACAATACAC 57.150 30.769 0.00 0.00 38.74 2.90
774 784 5.989249 TCTCGCACAAATAACATATGCATC 58.011 37.500 0.19 0.00 36.02 3.91
839 853 1.443533 GCCGCGTTAAAATGCAGCA 60.444 52.632 4.92 0.00 42.42 4.41
884 901 1.014044 GCGTCCATCGTCTTGCTTGA 61.014 55.000 0.00 0.00 42.13 3.02
888 905 4.210304 GCGCGTCCATCGTCTTGC 62.210 66.667 8.43 0.00 42.13 4.01
927 944 2.809174 CAGTCGATGAACGCGCCA 60.809 61.111 5.73 4.84 42.26 5.69
937 954 4.991153 TCTTAGAGCATCAACAGTCGAT 57.009 40.909 0.00 0.00 37.82 3.59
938 955 4.783764 TTCTTAGAGCATCAACAGTCGA 57.216 40.909 0.00 0.00 37.82 4.20
965 985 1.373748 CCGTACGATATTGGGCCCG 60.374 63.158 19.37 6.25 0.00 6.13
966 986 1.670083 GCCGTACGATATTGGGCCC 60.670 63.158 17.59 17.59 37.82 5.80
968 988 1.070105 TGGCCGTACGATATTGGGC 59.930 57.895 18.76 11.61 46.46 5.36
974 994 1.727511 CTTCGGGTGGCCGTACGATA 61.728 60.000 18.76 0.00 35.10 2.92
989 1009 1.150567 CTGGATCGCCTGAAGCTTCG 61.151 60.000 21.11 15.09 40.39 3.79
998 1019 1.036707 GACTAGCTTCTGGATCGCCT 58.963 55.000 0.00 0.00 34.31 5.52
1165 1204 0.758734 TGTGGATGGATGGATCGTCC 59.241 55.000 8.44 8.44 39.80 4.79
1187 1226 0.250989 GTCGGATTGGTTTGGTGGGA 60.251 55.000 0.00 0.00 0.00 4.37
1212 1251 4.038080 GCCGGCGGTGTTTCTTGG 62.038 66.667 28.82 0.00 0.00 3.61
1213 1252 4.038080 GGCCGGCGGTGTTTCTTG 62.038 66.667 28.82 0.00 0.00 3.02
1373 1415 2.031012 CAGTGTCTGCCTCCGCAA 59.969 61.111 0.00 0.00 46.66 4.85
1509 1557 8.997621 AAGTAATCAGAAGTAAATAGCACGAA 57.002 30.769 0.00 0.00 0.00 3.85
1558 1615 1.223763 GAGGCCGGGGGACTAAAAG 59.776 63.158 2.18 0.00 43.92 2.27
1646 2140 4.280929 GCCAACTCCACTCAAACCTTTAAT 59.719 41.667 0.00 0.00 0.00 1.40
1664 2158 7.475771 TGTCAAATTTATTGTTCTTGCCAAC 57.524 32.000 0.00 0.00 0.00 3.77
1666 2160 8.557864 CAATTGTCAAATTTATTGTTCTTGCCA 58.442 29.630 0.00 0.00 33.59 4.92
1667 2161 8.772705 TCAATTGTCAAATTTATTGTTCTTGCC 58.227 29.630 5.13 0.00 33.59 4.52
1685 2179 3.507233 TGATCAACCAAGCCTCAATTGTC 59.493 43.478 5.13 0.00 0.00 3.18
1686 2180 3.256631 GTGATCAACCAAGCCTCAATTGT 59.743 43.478 5.13 0.00 0.00 2.71
1687 2181 3.841643 GTGATCAACCAAGCCTCAATTG 58.158 45.455 0.00 0.00 0.00 2.32
1798 2300 6.294843 CCTTTGGCGATTCTAAGGGTTAAAAA 60.295 38.462 0.00 0.00 34.77 1.94
1805 2307 2.420058 ACCTTTGGCGATTCTAAGGG 57.580 50.000 14.43 2.84 41.14 3.95
1815 2317 3.067601 ACTTGGTTTTTCTACCTTTGGCG 59.932 43.478 0.00 0.00 39.04 5.69
1853 2355 7.862372 ACAAAACATGTACACAATCATGAAGAC 59.138 33.333 0.00 0.00 41.63 3.01
1866 2368 4.710423 AACAGTGCACAAAACATGTACA 57.290 36.364 21.04 0.00 41.46 2.90
1867 2369 6.518395 CGTATAACAGTGCACAAAACATGTAC 59.482 38.462 21.04 7.65 41.46 2.90
1868 2370 6.203145 ACGTATAACAGTGCACAAAACATGTA 59.797 34.615 21.04 3.45 41.46 2.29
1869 2371 5.008217 ACGTATAACAGTGCACAAAACATGT 59.992 36.000 21.04 10.56 45.34 3.21
1870 2372 5.448438 ACGTATAACAGTGCACAAAACATG 58.552 37.500 21.04 9.85 0.00 3.21
1871 2373 5.682943 ACGTATAACAGTGCACAAAACAT 57.317 34.783 21.04 7.82 0.00 2.71
1938 2440 6.091441 CAGAGTACAGTTAAATTGGCTCTCAC 59.909 42.308 0.00 0.00 33.13 3.51
2049 2561 6.861065 AGTAATAACGGGTAATTCAGCATG 57.139 37.500 0.00 0.00 37.54 4.06
2050 2562 7.051623 TGAAGTAATAACGGGTAATTCAGCAT 58.948 34.615 0.00 0.00 31.43 3.79
2051 2563 6.408035 TGAAGTAATAACGGGTAATTCAGCA 58.592 36.000 0.00 0.00 31.43 4.41
2052 2564 6.913873 TGAAGTAATAACGGGTAATTCAGC 57.086 37.500 0.00 0.00 31.43 4.26
2053 2565 7.713507 TGGATGAAGTAATAACGGGTAATTCAG 59.286 37.037 0.00 0.00 37.62 3.02
2094 2606 9.460906 GCAACAGAGTACAGTTATACCTTATAC 57.539 37.037 0.00 0.00 0.00 1.47
2100 2612 4.567159 GCAGCAACAGAGTACAGTTATACC 59.433 45.833 0.00 0.00 0.00 2.73
2101 2613 5.289675 CAGCAGCAACAGAGTACAGTTATAC 59.710 44.000 0.00 0.00 0.00 1.47
2102 2614 5.185056 TCAGCAGCAACAGAGTACAGTTATA 59.815 40.000 0.00 0.00 0.00 0.98
2103 2615 4.021104 TCAGCAGCAACAGAGTACAGTTAT 60.021 41.667 0.00 0.00 0.00 1.89
2104 2616 3.320826 TCAGCAGCAACAGAGTACAGTTA 59.679 43.478 0.00 0.00 0.00 2.24
2105 2617 2.103094 TCAGCAGCAACAGAGTACAGTT 59.897 45.455 0.00 0.00 0.00 3.16
2106 2618 1.688735 TCAGCAGCAACAGAGTACAGT 59.311 47.619 0.00 0.00 0.00 3.55
2107 2619 2.445565 TCAGCAGCAACAGAGTACAG 57.554 50.000 0.00 0.00 0.00 2.74
2108 2620 2.103094 AGTTCAGCAGCAACAGAGTACA 59.897 45.455 0.00 0.00 0.00 2.90
2109 2621 2.478134 CAGTTCAGCAGCAACAGAGTAC 59.522 50.000 0.00 0.00 0.00 2.73
2110 2622 2.103094 ACAGTTCAGCAGCAACAGAGTA 59.897 45.455 0.00 0.00 0.00 2.59
2111 2623 1.134280 ACAGTTCAGCAGCAACAGAGT 60.134 47.619 0.00 0.00 0.00 3.24
2112 2624 1.590932 ACAGTTCAGCAGCAACAGAG 58.409 50.000 0.00 0.00 0.00 3.35
2113 2625 2.103094 AGTACAGTTCAGCAGCAACAGA 59.897 45.455 0.00 0.00 0.00 3.41
2114 2626 2.487934 AGTACAGTTCAGCAGCAACAG 58.512 47.619 0.00 0.00 0.00 3.16
2115 2627 2.620251 AGTACAGTTCAGCAGCAACA 57.380 45.000 0.00 0.00 0.00 3.33
2116 2628 3.914312 TCTAGTACAGTTCAGCAGCAAC 58.086 45.455 0.00 0.00 0.00 4.17
2117 2629 4.600692 TTCTAGTACAGTTCAGCAGCAA 57.399 40.909 0.00 0.00 0.00 3.91
2118 2630 4.808414 ATTCTAGTACAGTTCAGCAGCA 57.192 40.909 0.00 0.00 0.00 4.41
2119 2631 5.672321 GCAAATTCTAGTACAGTTCAGCAGC 60.672 44.000 0.00 0.00 0.00 5.25
2130 2642 6.458888 GGGATTCAGCTTGCAAATTCTAGTAC 60.459 42.308 0.00 0.00 0.00 2.73
2194 2789 2.953466 CCATCAATTGGCTGGTCAAG 57.047 50.000 15.83 0.00 39.09 3.02
2248 2873 7.178983 TGCAAATCAAGTATTCCAAAGGAAGAT 59.821 33.333 4.65 0.00 45.48 2.40
2284 2909 8.936864 AGGAAAATGAGTAATAGTTCGAACTTG 58.063 33.333 33.82 0.00 40.37 3.16
2388 3013 1.236616 TGTGCTTCACATGGCTTCCG 61.237 55.000 0.00 0.00 39.62 4.30
2430 3055 1.682344 CTTAACAAGCAGGGGGCCC 60.682 63.158 15.76 15.76 46.50 5.80
2433 3058 2.586648 ACTTCTTAACAAGCAGGGGG 57.413 50.000 0.00 0.00 0.00 5.40
2437 3062 7.897575 ACTCATTCTACTTCTTAACAAGCAG 57.102 36.000 0.00 0.00 0.00 4.24
2527 3152 5.039333 GCAGCATGGAACTTCATTACAATC 58.961 41.667 0.00 0.00 33.69 2.67
2529 3154 3.825585 TGCAGCATGGAACTTCATTACAA 59.174 39.130 0.00 0.00 33.69 2.41
2629 3257 8.737168 ACACTACAAATGTAATATGTGCTGAT 57.263 30.769 9.36 0.00 30.65 2.90
2630 3258 7.279981 GGACACTACAAATGTAATATGTGCTGA 59.720 37.037 12.48 0.00 32.11 4.26
2631 3259 7.280876 AGGACACTACAAATGTAATATGTGCTG 59.719 37.037 17.60 0.00 37.76 4.41
2632 3260 7.338710 AGGACACTACAAATGTAATATGTGCT 58.661 34.615 14.82 14.82 36.13 4.40
2633 3261 7.553881 AGGACACTACAAATGTAATATGTGC 57.446 36.000 12.11 12.11 33.52 4.57
2649 3277 5.252397 TCTTTACAGAGGGAGTAGGACACTA 59.748 44.000 0.00 0.00 37.72 2.74
2650 3278 4.044317 TCTTTACAGAGGGAGTAGGACACT 59.956 45.833 0.00 0.00 41.47 3.55
2651 3279 4.342359 TCTTTACAGAGGGAGTAGGACAC 58.658 47.826 0.00 0.00 0.00 3.67
2652 3280 4.669866 TCTTTACAGAGGGAGTAGGACA 57.330 45.455 0.00 0.00 0.00 4.02
2653 3281 5.997384 TTTCTTTACAGAGGGAGTAGGAC 57.003 43.478 0.00 0.00 0.00 3.85
2654 3282 9.947189 TTATATTTCTTTACAGAGGGAGTAGGA 57.053 33.333 0.00 0.00 0.00 2.94
2658 3286 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
2659 3287 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
2660 3288 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
2661 3289 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2662 3290 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2663 3291 9.907576 CAAACGCTCTTATATTTCTTTACAGAG 57.092 33.333 0.00 0.00 0.00 3.35
2664 3292 8.879759 CCAAACGCTCTTATATTTCTTTACAGA 58.120 33.333 0.00 0.00 0.00 3.41
2665 3293 8.879759 TCCAAACGCTCTTATATTTCTTTACAG 58.120 33.333 0.00 0.00 0.00 2.74
2666 3294 8.780846 TCCAAACGCTCTTATATTTCTTTACA 57.219 30.769 0.00 0.00 0.00 2.41
2667 3295 9.865484 GATCCAAACGCTCTTATATTTCTTTAC 57.135 33.333 0.00 0.00 0.00 2.01
2668 3296 9.607988 TGATCCAAACGCTCTTATATTTCTTTA 57.392 29.630 0.00 0.00 0.00 1.85
2669 3297 8.506168 TGATCCAAACGCTCTTATATTTCTTT 57.494 30.769 0.00 0.00 0.00 2.52
2670 3298 8.562892 CATGATCCAAACGCTCTTATATTTCTT 58.437 33.333 0.00 0.00 0.00 2.52
2671 3299 7.933577 TCATGATCCAAACGCTCTTATATTTCT 59.066 33.333 0.00 0.00 0.00 2.52
2672 3300 8.087982 TCATGATCCAAACGCTCTTATATTTC 57.912 34.615 0.00 0.00 0.00 2.17
2673 3301 8.450578 TTCATGATCCAAACGCTCTTATATTT 57.549 30.769 0.00 0.00 0.00 1.40
2674 3302 8.509690 CATTCATGATCCAAACGCTCTTATATT 58.490 33.333 0.00 0.00 0.00 1.28
2675 3303 7.361542 GCATTCATGATCCAAACGCTCTTATAT 60.362 37.037 0.00 0.00 0.00 0.86
2676 3304 6.073058 GCATTCATGATCCAAACGCTCTTATA 60.073 38.462 0.00 0.00 0.00 0.98
2677 3305 5.278169 GCATTCATGATCCAAACGCTCTTAT 60.278 40.000 0.00 0.00 0.00 1.73
2678 3306 4.035558 GCATTCATGATCCAAACGCTCTTA 59.964 41.667 0.00 0.00 0.00 2.10
2679 3307 3.181493 GCATTCATGATCCAAACGCTCTT 60.181 43.478 0.00 0.00 0.00 2.85
2680 3308 2.357009 GCATTCATGATCCAAACGCTCT 59.643 45.455 0.00 0.00 0.00 4.09
2681 3309 2.097954 TGCATTCATGATCCAAACGCTC 59.902 45.455 0.00 0.00 0.00 5.03
2682 3310 2.093890 TGCATTCATGATCCAAACGCT 58.906 42.857 0.00 0.00 0.00 5.07
2683 3311 2.159338 ACTGCATTCATGATCCAAACGC 60.159 45.455 0.00 0.00 0.00 4.84
2684 3312 3.127376 TCACTGCATTCATGATCCAAACG 59.873 43.478 0.00 0.00 0.00 3.60
2685 3313 4.707030 TCACTGCATTCATGATCCAAAC 57.293 40.909 0.00 0.00 0.00 2.93
2686 3314 5.198207 AGATCACTGCATTCATGATCCAAA 58.802 37.500 19.07 0.00 46.61 3.28
2687 3315 4.788679 AGATCACTGCATTCATGATCCAA 58.211 39.130 19.07 0.00 46.61 3.53
2688 3316 4.432980 AGATCACTGCATTCATGATCCA 57.567 40.909 19.07 0.00 46.61 3.41
2689 3317 6.565435 CGTTTAGATCACTGCATTCATGATCC 60.565 42.308 19.07 9.01 46.61 3.36
2690 3318 6.361114 CGTTTAGATCACTGCATTCATGATC 58.639 40.000 16.69 16.69 46.04 2.92
2691 3319 5.277683 GCGTTTAGATCACTGCATTCATGAT 60.278 40.000 0.00 0.00 35.77 2.45
2692 3320 4.034394 GCGTTTAGATCACTGCATTCATGA 59.966 41.667 0.00 0.00 0.00 3.07
2693 3321 4.034858 AGCGTTTAGATCACTGCATTCATG 59.965 41.667 0.00 0.00 0.00 3.07
2694 3322 4.194640 AGCGTTTAGATCACTGCATTCAT 58.805 39.130 0.00 0.00 0.00 2.57
2695 3323 3.599343 AGCGTTTAGATCACTGCATTCA 58.401 40.909 0.00 0.00 0.00 2.57
2696 3324 3.868077 AGAGCGTTTAGATCACTGCATTC 59.132 43.478 0.00 0.00 37.82 2.67
2697 3325 3.866651 AGAGCGTTTAGATCACTGCATT 58.133 40.909 0.00 0.00 37.82 3.56
2698 3326 3.533606 AGAGCGTTTAGATCACTGCAT 57.466 42.857 0.00 0.00 37.82 3.96
2699 3327 3.319137 AAGAGCGTTTAGATCACTGCA 57.681 42.857 0.00 0.00 37.82 4.41
2700 3328 7.644986 AATATAAGAGCGTTTAGATCACTGC 57.355 36.000 0.00 0.00 37.82 4.40
2701 3329 9.469807 AGAAATATAAGAGCGTTTAGATCACTG 57.530 33.333 0.00 0.00 37.82 3.66
2710 3338 8.616076 CCTTCATGAAGAAATATAAGAGCGTTT 58.384 33.333 32.49 0.00 40.79 3.60
2711 3339 7.227512 CCCTTCATGAAGAAATATAAGAGCGTT 59.772 37.037 32.49 0.00 40.79 4.84
2712 3340 6.708054 CCCTTCATGAAGAAATATAAGAGCGT 59.292 38.462 32.49 0.00 40.79 5.07
2713 3341 6.931281 TCCCTTCATGAAGAAATATAAGAGCG 59.069 38.462 32.49 13.29 40.79 5.03
2714 3342 7.936301 ACTCCCTTCATGAAGAAATATAAGAGC 59.064 37.037 32.49 0.00 40.79 4.09
2720 3348 9.927081 AAACATACTCCCTTCATGAAGAAATAT 57.073 29.630 32.49 20.68 40.79 1.28
2721 3349 9.753674 AAAACATACTCCCTTCATGAAGAAATA 57.246 29.630 32.49 19.60 40.79 1.40
2722 3350 8.655935 AAAACATACTCCCTTCATGAAGAAAT 57.344 30.769 32.49 18.30 40.79 2.17
2723 3351 8.359642 CAAAAACATACTCCCTTCATGAAGAAA 58.640 33.333 32.49 19.73 40.79 2.52
2724 3352 7.723616 TCAAAAACATACTCCCTTCATGAAGAA 59.276 33.333 32.49 20.05 40.79 2.52
2725 3353 7.230747 TCAAAAACATACTCCCTTCATGAAGA 58.769 34.615 32.49 15.51 40.79 2.87
2726 3354 7.452880 TCAAAAACATACTCCCTTCATGAAG 57.547 36.000 25.75 25.75 38.14 3.02
2727 3355 9.527157 TTATCAAAAACATACTCCCTTCATGAA 57.473 29.630 8.12 8.12 0.00 2.57
2728 3356 9.699410 ATTATCAAAAACATACTCCCTTCATGA 57.301 29.630 0.00 0.00 0.00 3.07
2761 3389 8.854117 GTTTCATTCTTCCTTAATGCATCCTAT 58.146 33.333 0.00 0.00 34.89 2.57
2762 3390 8.055181 AGTTTCATTCTTCCTTAATGCATCCTA 58.945 33.333 0.00 0.00 34.89 2.94
2763 3391 6.894103 AGTTTCATTCTTCCTTAATGCATCCT 59.106 34.615 0.00 0.00 34.89 3.24
2764 3392 6.976925 CAGTTTCATTCTTCCTTAATGCATCC 59.023 38.462 0.00 0.00 34.89 3.51
2765 3393 6.474751 GCAGTTTCATTCTTCCTTAATGCATC 59.525 38.462 0.00 0.00 34.89 3.91
2766 3394 6.154021 AGCAGTTTCATTCTTCCTTAATGCAT 59.846 34.615 0.00 0.00 34.89 3.96
2767 3395 5.477984 AGCAGTTTCATTCTTCCTTAATGCA 59.522 36.000 0.00 0.00 34.89 3.96
2768 3396 5.958955 AGCAGTTTCATTCTTCCTTAATGC 58.041 37.500 0.00 0.00 34.89 3.56
2769 3397 6.151648 TGGAGCAGTTTCATTCTTCCTTAATG 59.848 38.462 0.00 0.00 35.98 1.90
2770 3398 6.248433 TGGAGCAGTTTCATTCTTCCTTAAT 58.752 36.000 0.00 0.00 0.00 1.40
2771 3399 5.630121 TGGAGCAGTTTCATTCTTCCTTAA 58.370 37.500 0.00 0.00 0.00 1.85
2772 3400 5.241403 TGGAGCAGTTTCATTCTTCCTTA 57.759 39.130 0.00 0.00 0.00 2.69
2773 3401 4.104383 TGGAGCAGTTTCATTCTTCCTT 57.896 40.909 0.00 0.00 0.00 3.36
2774 3402 3.795688 TGGAGCAGTTTCATTCTTCCT 57.204 42.857 0.00 0.00 0.00 3.36
2775 3403 4.037923 TGTTTGGAGCAGTTTCATTCTTCC 59.962 41.667 0.00 0.00 0.00 3.46
2776 3404 4.978580 GTGTTTGGAGCAGTTTCATTCTTC 59.021 41.667 0.00 0.00 0.00 2.87
2777 3405 4.202151 GGTGTTTGGAGCAGTTTCATTCTT 60.202 41.667 0.00 0.00 0.00 2.52
2778 3406 3.319122 GGTGTTTGGAGCAGTTTCATTCT 59.681 43.478 0.00 0.00 0.00 2.40
2779 3407 3.319122 AGGTGTTTGGAGCAGTTTCATTC 59.681 43.478 0.00 0.00 0.00 2.67
2780 3408 3.299503 AGGTGTTTGGAGCAGTTTCATT 58.700 40.909 0.00 0.00 0.00 2.57
2781 3409 2.949447 AGGTGTTTGGAGCAGTTTCAT 58.051 42.857 0.00 0.00 0.00 2.57
2782 3410 2.435372 AGGTGTTTGGAGCAGTTTCA 57.565 45.000 0.00 0.00 0.00 2.69
2783 3411 2.034685 GGAAGGTGTTTGGAGCAGTTTC 59.965 50.000 0.00 0.00 0.00 2.78
2784 3412 2.031870 GGAAGGTGTTTGGAGCAGTTT 58.968 47.619 0.00 0.00 0.00 2.66
2785 3413 1.215423 AGGAAGGTGTTTGGAGCAGTT 59.785 47.619 0.00 0.00 0.00 3.16
2786 3414 0.846693 AGGAAGGTGTTTGGAGCAGT 59.153 50.000 0.00 0.00 0.00 4.40
2787 3415 1.242076 CAGGAAGGTGTTTGGAGCAG 58.758 55.000 0.00 0.00 0.00 4.24
2788 3416 0.823356 GCAGGAAGGTGTTTGGAGCA 60.823 55.000 0.00 0.00 0.00 4.26
2789 3417 0.823356 TGCAGGAAGGTGTTTGGAGC 60.823 55.000 0.00 0.00 0.00 4.70
2790 3418 0.954452 GTGCAGGAAGGTGTTTGGAG 59.046 55.000 0.00 0.00 0.00 3.86
2791 3419 0.467290 GGTGCAGGAAGGTGTTTGGA 60.467 55.000 0.00 0.00 0.00 3.53
2792 3420 1.463553 GGGTGCAGGAAGGTGTTTGG 61.464 60.000 0.00 0.00 0.00 3.28
2793 3421 1.795170 CGGGTGCAGGAAGGTGTTTG 61.795 60.000 0.00 0.00 0.00 2.93
2794 3422 1.528309 CGGGTGCAGGAAGGTGTTT 60.528 57.895 0.00 0.00 0.00 2.83
2795 3423 2.113139 CGGGTGCAGGAAGGTGTT 59.887 61.111 0.00 0.00 0.00 3.32
2796 3424 4.643387 GCGGGTGCAGGAAGGTGT 62.643 66.667 0.00 0.00 42.15 4.16
2828 3456 4.351938 TTCCTCCCGTGACGCGTG 62.352 66.667 20.70 1.04 39.32 5.34
2829 3457 4.353437 GTTCCTCCCGTGACGCGT 62.353 66.667 13.85 13.85 39.32 6.01
2839 3467 2.783288 CGGCGAGTAGGGTTCCTCC 61.783 68.421 0.00 0.00 34.61 4.30
2840 3468 2.806237 CGGCGAGTAGGGTTCCTC 59.194 66.667 0.00 0.00 34.61 3.71
2841 3469 3.459063 GCGGCGAGTAGGGTTCCT 61.459 66.667 12.98 0.00 37.71 3.36
2842 3470 4.525949 GGCGGCGAGTAGGGTTCC 62.526 72.222 12.98 0.00 0.00 3.62
2843 3471 4.867599 CGGCGGCGAGTAGGGTTC 62.868 72.222 29.19 0.00 0.00 3.62
2861 3489 4.354943 AGAGGGAGGGTGGGTGGG 62.355 72.222 0.00 0.00 0.00 4.61
2862 3490 2.689034 GAGAGGGAGGGTGGGTGG 60.689 72.222 0.00 0.00 0.00 4.61
2863 3491 2.689034 GGAGAGGGAGGGTGGGTG 60.689 72.222 0.00 0.00 0.00 4.61
2864 3492 2.876858 AGGAGAGGGAGGGTGGGT 60.877 66.667 0.00 0.00 0.00 4.51
2865 3493 2.366167 CAGGAGAGGGAGGGTGGG 60.366 72.222 0.00 0.00 0.00 4.61
2866 3494 2.366167 CCAGGAGAGGGAGGGTGG 60.366 72.222 0.00 0.00 0.00 4.61
2867 3495 3.086600 GCCAGGAGAGGGAGGGTG 61.087 72.222 0.00 0.00 0.00 4.61
2868 3496 3.288381 AGCCAGGAGAGGGAGGGT 61.288 66.667 0.00 0.00 0.00 4.34
2869 3497 2.767496 CAGCCAGGAGAGGGAGGG 60.767 72.222 0.00 0.00 0.00 4.30
2870 3498 3.478274 GCAGCCAGGAGAGGGAGG 61.478 72.222 0.00 0.00 0.00 4.30
2871 3499 3.478274 GGCAGCCAGGAGAGGGAG 61.478 72.222 6.55 0.00 0.00 4.30
2874 3502 3.013932 AAGGGCAGCCAGGAGAGG 61.014 66.667 15.19 0.00 0.00 3.69
2875 3503 2.588989 GAAGGGCAGCCAGGAGAG 59.411 66.667 15.19 0.00 0.00 3.20
2876 3504 3.011517 GGAAGGGCAGCCAGGAGA 61.012 66.667 15.19 0.00 0.00 3.71
2877 3505 4.120755 GGGAAGGGCAGCCAGGAG 62.121 72.222 15.19 0.00 0.00 3.69
2878 3506 4.682714 AGGGAAGGGCAGCCAGGA 62.683 66.667 15.19 0.00 0.00 3.86
2879 3507 4.437587 CAGGGAAGGGCAGCCAGG 62.438 72.222 15.19 0.00 0.00 4.45
2880 3508 3.635268 GACAGGGAAGGGCAGCCAG 62.635 68.421 15.19 0.00 0.00 4.85
2881 3509 3.650950 GACAGGGAAGGGCAGCCA 61.651 66.667 15.19 0.00 0.00 4.75
2882 3510 4.785453 CGACAGGGAAGGGCAGCC 62.785 72.222 1.26 1.26 0.00 4.85
2883 3511 3.706373 TCGACAGGGAAGGGCAGC 61.706 66.667 0.00 0.00 0.00 5.25
2884 3512 2.266055 GTCGACAGGGAAGGGCAG 59.734 66.667 11.55 0.00 0.00 4.85
2885 3513 3.691342 CGTCGACAGGGAAGGGCA 61.691 66.667 17.16 0.00 0.00 5.36
2887 3515 3.649277 CTGCGTCGACAGGGAAGGG 62.649 68.421 17.16 0.00 33.85 3.95
2888 3516 2.125912 CTGCGTCGACAGGGAAGG 60.126 66.667 17.16 0.00 33.85 3.46
2889 3517 1.153939 CTCTGCGTCGACAGGGAAG 60.154 63.158 17.16 3.36 40.90 3.46
2890 3518 2.962569 CTCTGCGTCGACAGGGAA 59.037 61.111 17.16 0.00 40.90 3.97
2891 3519 3.749064 GCTCTGCGTCGACAGGGA 61.749 66.667 17.16 8.58 40.90 4.20
2903 3531 4.463879 CCTGACAGCCCCGCTCTG 62.464 72.222 0.00 0.00 36.40 3.35
2904 3532 4.704103 TCCTGACAGCCCCGCTCT 62.704 66.667 0.00 0.00 36.40 4.09
2905 3533 4.459089 GTCCTGACAGCCCCGCTC 62.459 72.222 0.00 0.00 36.40 5.03
2909 3537 3.721706 CAGGGTCCTGACAGCCCC 61.722 72.222 16.88 16.88 46.30 5.80
2925 3553 6.806668 TGATATTGGTGTGACTTAGGATCA 57.193 37.500 0.00 0.00 0.00 2.92
2945 3573 7.040892 GCCAAGTGATATGATGTGTTACATGAT 60.041 37.037 0.00 0.00 39.27 2.45
2988 3631 9.184062 CGTACTATCATATACGTAAGCCAAAAA 57.816 33.333 0.00 0.00 45.62 1.94
2997 3640 4.183865 AGCGGCGTACTATCATATACGTA 58.816 43.478 9.37 0.00 44.69 3.57
3012 3655 0.390340 CATATGGATGCTAGCGGCGT 60.390 55.000 10.77 0.00 45.43 5.68
3013 3656 0.108662 TCATATGGATGCTAGCGGCG 60.109 55.000 10.77 0.51 45.43 6.46
3033 3676 3.681594 GCCATGTCAGTCCGGATTCTTTA 60.682 47.826 7.81 0.00 0.00 1.85
3040 3683 0.324368 ACTAGCCATGTCAGTCCGGA 60.324 55.000 0.00 0.00 0.00 5.14
3045 3688 2.169352 GTCCATGACTAGCCATGTCAGT 59.831 50.000 16.64 0.00 45.88 3.41
3054 3697 2.359900 CACTTTGGGTCCATGACTAGC 58.640 52.381 0.00 0.00 32.47 3.42
3061 3704 1.847798 TAGCGCCACTTTGGGTCCAT 61.848 55.000 2.29 0.00 38.19 3.41
3096 3739 5.749588 CACGTTCGTTGTTGGGTCATATATA 59.250 40.000 0.00 0.00 0.00 0.86
3100 3743 2.136728 CACGTTCGTTGTTGGGTCATA 58.863 47.619 0.00 0.00 0.00 2.15
3155 3802 6.204108 ACGTTGTTTCTTTAAGTCCATGTAGG 59.796 38.462 0.00 0.00 39.47 3.18
3172 3819 2.100087 GGGGAAATGTCACACGTTGTTT 59.900 45.455 0.00 0.00 0.00 2.83
3194 3841 2.494059 CGTTCATGTGTCTGTCCCTTT 58.506 47.619 0.00 0.00 0.00 3.11
3209 3856 1.608025 GCATGTGTCCTTCTCCGTTCA 60.608 52.381 0.00 0.00 0.00 3.18
3215 3862 2.109126 GCCGGCATGTGTCCTTCTC 61.109 63.158 24.80 0.00 0.00 2.87
3253 3900 2.365617 GAGCCATGGTAGCTTGCTACTA 59.634 50.000 25.69 22.23 41.75 1.82
3285 3932 3.703052 TCTTACCGGGAAATGTCTCCTAC 59.297 47.826 6.32 0.00 35.63 3.18
3329 3976 2.976185 TGTGTGGGATCTGACAACCTAA 59.024 45.455 0.00 0.00 0.00 2.69
3382 4030 8.405531 GCCATGTTGTATTTACACATATCAAGT 58.594 33.333 0.00 0.00 35.64 3.16
3385 4033 7.872113 TGCCATGTTGTATTTACACATATCA 57.128 32.000 0.00 0.00 35.64 2.15
3394 4042 6.581171 TGTTGTGATGCCATGTTGTATTTA 57.419 33.333 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.