Multiple sequence alignment - TraesCS5B01G299300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G299300 chr5B 100.000 5340 0 0 1 5340 482504200 482498861 0.000000e+00 9862.0
1 TraesCS5B01G299300 chr5B 85.897 78 8 2 3384 3458 375232705 375232782 4.430000e-11 80.5
2 TraesCS5B01G299300 chr5A 94.675 1784 55 18 124 1902 511016430 511018178 0.000000e+00 2732.0
3 TraesCS5B01G299300 chr5A 92.420 1504 87 8 3844 5340 511031758 511033241 0.000000e+00 2121.0
4 TraesCS5B01G299300 chr5A 96.219 1243 40 5 1900 3137 511018259 511019499 0.000000e+00 2028.0
5 TraesCS5B01G299300 chr5A 96.322 435 11 5 3426 3858 511019571 511020002 0.000000e+00 710.0
6 TraesCS5B01G299300 chr5A 97.436 117 3 0 11 127 510996853 510996969 3.260000e-47 200.0
7 TraesCS5B01G299300 chr5A 94.382 89 4 1 3173 3261 352899721 352899808 9.330000e-28 135.0
8 TraesCS5B01G299300 chr5A 88.312 77 7 2 3384 3458 538338259 538338335 2.050000e-14 91.6
9 TraesCS5B01G299300 chr7B 97.638 127 3 0 3260 3386 332242888 332242762 9.000000e-53 219.0
10 TraesCS5B01G299300 chr2B 96.269 134 3 2 3256 3387 136176667 136176800 9.000000e-53 219.0
11 TraesCS5B01G299300 chr2B 91.667 96 8 0 3166 3261 494401728 494401823 3.360000e-27 134.0
12 TraesCS5B01G299300 chr2B 100.000 37 0 0 3422 3458 557173928 557173964 9.600000e-08 69.4
13 TraesCS5B01G299300 chr5D 96.899 129 4 0 3259 3387 90314142 90314270 3.240000e-52 217.0
14 TraesCS5B01G299300 chr4A 96.183 131 5 0 3259 3389 4530224 4530094 1.160000e-51 215.0
15 TraesCS5B01G299300 chr4A 92.617 149 8 2 3245 3391 695804051 695803904 1.510000e-50 211.0
16 TraesCS5B01G299300 chr4A 92.617 149 8 2 3245 3391 695870352 695870205 1.510000e-50 211.0
17 TraesCS5B01G299300 chr4A 92.708 96 7 0 3166 3261 472196555 472196460 7.210000e-29 139.0
18 TraesCS5B01G299300 chr3B 96.183 131 5 0 3256 3386 583843958 583843828 1.160000e-51 215.0
19 TraesCS5B01G299300 chr1B 96.183 131 5 0 3259 3389 245943250 245943380 1.160000e-51 215.0
20 TraesCS5B01G299300 chr3A 94.891 137 6 1 3254 3390 648181590 648181455 4.190000e-51 213.0
21 TraesCS5B01G299300 chr3A 93.750 96 6 0 3166 3261 541953 541858 1.550000e-30 145.0
22 TraesCS5B01G299300 chr2A 94.792 96 5 0 3166 3261 127727844 127727749 3.330000e-32 150.0
23 TraesCS5B01G299300 chr2A 91.753 97 7 1 3166 3261 568416765 568416861 3.360000e-27 134.0
24 TraesCS5B01G299300 chr2A 89.610 77 6 2 3384 3458 149226295 149226371 4.400000e-16 97.1
25 TraesCS5B01G299300 chr1A 93.750 96 6 0 3166 3261 108154821 108154916 1.550000e-30 145.0
26 TraesCS5B01G299300 chr1A 100.000 37 0 0 3422 3458 282062742 282062778 9.600000e-08 69.4
27 TraesCS5B01G299300 chr2D 92.708 96 7 0 3166 3261 422089553 422089648 7.210000e-29 139.0
28 TraesCS5B01G299300 chrUn 86.486 111 15 0 3165 3275 289821014 289820904 7.260000e-24 122.0
29 TraesCS5B01G299300 chr1D 88.312 77 7 2 3384 3458 87222885 87222809 2.050000e-14 91.6
30 TraesCS5B01G299300 chr7A 100.000 37 0 0 3422 3458 487820998 487820962 9.600000e-08 69.4
31 TraesCS5B01G299300 chr6A 100.000 37 0 0 3422 3458 213272049 213272085 9.600000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G299300 chr5B 482498861 482504200 5339 True 9862.000000 9862 100.000000 1 5340 1 chr5B.!!$R1 5339
1 TraesCS5B01G299300 chr5A 511031758 511033241 1483 False 2121.000000 2121 92.420000 3844 5340 1 chr5A.!!$F3 1496
2 TraesCS5B01G299300 chr5A 511016430 511020002 3572 False 1823.333333 2732 95.738667 124 3858 3 chr5A.!!$F5 3734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.108041 GCCCACCATTGCATTTCAGG 60.108 55.0 0.00 0.0 0.00 3.86 F
1236 1241 0.107456 CAGTCAGATGGGAATCGGGG 59.893 60.0 0.00 0.0 0.00 5.73 F
2189 2277 0.104120 CAGTGTTGGGACGTGTCTCA 59.896 55.0 0.00 0.0 38.52 3.27 F
3281 3381 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2012 0.250513 GGTTCTCCATTGGCTCGTCT 59.749 55.0 0.00 0.0 0.00 4.18 R
3086 3179 0.256752 CAAGAGGCATGGGGATGTCA 59.743 55.0 0.00 0.0 0.00 3.58 R
3259 3359 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
5060 5168 0.179108 ATCGCGGTTGAGAGGTAAGC 60.179 55.0 6.13 0.0 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.573664 TGCATTACATCTTGCAGTTAAAGT 57.426 33.333 0.00 0.00 43.54 2.66
40 41 7.680442 TGCATTACATCTTGCAGTTAAAGTA 57.320 32.000 0.00 0.00 43.54 2.24
41 42 8.279970 TGCATTACATCTTGCAGTTAAAGTAT 57.720 30.769 0.00 0.00 43.54 2.12
42 43 8.739039 TGCATTACATCTTGCAGTTAAAGTATT 58.261 29.630 0.00 0.00 43.54 1.89
43 44 9.013490 GCATTACATCTTGCAGTTAAAGTATTG 57.987 33.333 0.00 0.00 38.72 1.90
46 47 7.986085 ACATCTTGCAGTTAAAGTATTGAGT 57.014 32.000 0.00 0.00 0.00 3.41
48 49 8.936864 ACATCTTGCAGTTAAAGTATTGAGTAC 58.063 33.333 0.00 0.00 0.00 2.73
49 50 9.155975 CATCTTGCAGTTAAAGTATTGAGTACT 57.844 33.333 0.00 0.00 45.56 2.73
66 67 8.996651 TTGAGTACTATGAATACTGATCAGGA 57.003 34.615 26.08 19.52 32.93 3.86
67 68 8.996651 TGAGTACTATGAATACTGATCAGGAA 57.003 34.615 26.08 14.38 32.93 3.36
68 69 9.421399 TGAGTACTATGAATACTGATCAGGAAA 57.579 33.333 26.08 11.88 32.93 3.13
73 74 9.722184 ACTATGAATACTGATCAGGAAATCATG 57.278 33.333 31.18 25.31 34.65 3.07
74 75 9.722184 CTATGAATACTGATCAGGAAATCATGT 57.278 33.333 31.18 19.45 34.65 3.21
75 76 7.797038 TGAATACTGATCAGGAAATCATGTG 57.203 36.000 26.08 0.00 35.21 3.21
76 77 6.261603 TGAATACTGATCAGGAAATCATGTGC 59.738 38.462 26.08 0.44 35.21 4.57
77 78 3.285484 ACTGATCAGGAAATCATGTGCC 58.715 45.455 26.08 0.00 35.21 5.01
78 79 2.621998 CTGATCAGGAAATCATGTGCCC 59.378 50.000 15.38 0.00 35.21 5.36
79 80 2.025131 TGATCAGGAAATCATGTGCCCA 60.025 45.455 0.00 0.00 30.76 5.36
80 81 1.838112 TCAGGAAATCATGTGCCCAC 58.162 50.000 0.00 0.00 0.00 4.61
81 82 0.819582 CAGGAAATCATGTGCCCACC 59.180 55.000 0.00 0.00 0.00 4.61
82 83 0.409092 AGGAAATCATGTGCCCACCA 59.591 50.000 0.00 0.00 0.00 4.17
83 84 1.007479 AGGAAATCATGTGCCCACCAT 59.993 47.619 0.00 0.00 0.00 3.55
84 85 1.832998 GGAAATCATGTGCCCACCATT 59.167 47.619 0.00 0.00 0.00 3.16
85 86 2.419021 GGAAATCATGTGCCCACCATTG 60.419 50.000 0.00 0.00 0.00 2.82
86 87 0.538118 AATCATGTGCCCACCATTGC 59.462 50.000 0.00 0.00 0.00 3.56
87 88 0.615261 ATCATGTGCCCACCATTGCA 60.615 50.000 0.00 0.00 34.54 4.08
88 89 0.615261 TCATGTGCCCACCATTGCAT 60.615 50.000 0.00 0.00 40.07 3.96
89 90 0.250793 CATGTGCCCACCATTGCATT 59.749 50.000 0.00 0.00 40.07 3.56
90 91 0.985760 ATGTGCCCACCATTGCATTT 59.014 45.000 0.00 0.00 40.07 2.32
91 92 0.321021 TGTGCCCACCATTGCATTTC 59.679 50.000 0.00 0.00 40.07 2.17
92 93 0.321021 GTGCCCACCATTGCATTTCA 59.679 50.000 0.00 0.00 40.07 2.69
93 94 0.609151 TGCCCACCATTGCATTTCAG 59.391 50.000 0.00 0.00 31.31 3.02
94 95 0.108041 GCCCACCATTGCATTTCAGG 60.108 55.000 0.00 0.00 0.00 3.86
95 96 1.269012 CCCACCATTGCATTTCAGGT 58.731 50.000 0.00 0.00 0.00 4.00
97 98 1.673626 CCACCATTGCATTTCAGGTGC 60.674 52.381 14.43 0.00 46.39 5.01
98 99 0.609662 ACCATTGCATTTCAGGTGCC 59.390 50.000 0.00 0.00 41.83 5.01
99 100 0.458889 CCATTGCATTTCAGGTGCCG 60.459 55.000 0.00 0.00 41.83 5.69
100 101 0.527113 CATTGCATTTCAGGTGCCGA 59.473 50.000 0.00 0.00 41.83 5.54
101 102 1.067706 CATTGCATTTCAGGTGCCGAA 60.068 47.619 0.00 0.00 41.83 4.30
102 103 0.313672 TTGCATTTCAGGTGCCGAAC 59.686 50.000 0.00 0.00 41.83 3.95
103 104 1.154225 GCATTTCAGGTGCCGAACG 60.154 57.895 0.00 0.00 36.61 3.95
104 105 1.573829 GCATTTCAGGTGCCGAACGA 61.574 55.000 0.00 0.00 36.61 3.85
105 106 1.086696 CATTTCAGGTGCCGAACGAT 58.913 50.000 0.00 0.00 0.00 3.73
106 107 1.062587 CATTTCAGGTGCCGAACGATC 59.937 52.381 0.00 0.00 0.00 3.69
107 108 0.320374 TTTCAGGTGCCGAACGATCT 59.680 50.000 0.00 0.00 0.00 2.75
108 109 0.320374 TTCAGGTGCCGAACGATCTT 59.680 50.000 0.00 0.00 0.00 2.40
109 110 0.389817 TCAGGTGCCGAACGATCTTG 60.390 55.000 0.00 0.00 0.00 3.02
110 111 1.741770 AGGTGCCGAACGATCTTGC 60.742 57.895 0.00 0.00 0.00 4.01
111 112 2.750888 GGTGCCGAACGATCTTGCC 61.751 63.158 0.00 0.00 0.00 4.52
112 113 2.813474 TGCCGAACGATCTTGCCG 60.813 61.111 0.00 0.00 0.00 5.69
113 114 2.508439 GCCGAACGATCTTGCCGA 60.508 61.111 0.00 0.00 0.00 5.54
114 115 2.098233 GCCGAACGATCTTGCCGAA 61.098 57.895 0.00 0.00 0.00 4.30
115 116 1.429148 GCCGAACGATCTTGCCGAAT 61.429 55.000 0.00 0.00 0.00 3.34
116 117 0.301687 CCGAACGATCTTGCCGAATG 59.698 55.000 0.00 0.00 0.00 2.67
117 118 0.315382 CGAACGATCTTGCCGAATGC 60.315 55.000 0.00 0.00 41.77 3.56
118 119 0.315382 GAACGATCTTGCCGAATGCG 60.315 55.000 0.00 0.00 45.60 4.73
119 120 2.052766 CGATCTTGCCGAATGCGC 60.053 61.111 0.00 0.00 45.60 6.09
120 121 2.329339 GATCTTGCCGAATGCGCC 59.671 61.111 4.18 0.00 45.60 6.53
121 122 3.512287 GATCTTGCCGAATGCGCCG 62.512 63.158 4.18 0.03 45.60 6.46
270 271 0.251787 AACCAGCACCCCCTTTGATC 60.252 55.000 0.00 0.00 0.00 2.92
283 284 3.256383 CCCTTTGATCATGTGCAAACAGA 59.744 43.478 0.00 0.00 31.37 3.41
318 319 4.065088 TGCAAAACAGAGTCTACATGGAC 58.935 43.478 0.00 0.00 36.56 4.02
338 339 4.096984 GGACAATTTGGGCAAGATAGTCTG 59.903 45.833 0.78 0.00 0.00 3.51
340 341 2.877097 TTTGGGCAAGATAGTCTGCA 57.123 45.000 0.00 0.00 0.00 4.41
341 342 3.370840 TTTGGGCAAGATAGTCTGCAT 57.629 42.857 0.00 0.00 0.00 3.96
342 343 4.502105 TTTGGGCAAGATAGTCTGCATA 57.498 40.909 0.00 0.00 0.00 3.14
344 345 5.823861 TTGGGCAAGATAGTCTGCATATA 57.176 39.130 0.00 0.00 0.00 0.86
345 346 6.378661 TTGGGCAAGATAGTCTGCATATAT 57.621 37.500 0.00 0.00 0.00 0.86
346 347 5.982356 TGGGCAAGATAGTCTGCATATATC 58.018 41.667 0.00 0.00 0.00 1.63
347 348 5.104776 TGGGCAAGATAGTCTGCATATATCC 60.105 44.000 8.54 0.00 0.00 2.59
349 350 6.352565 GGGCAAGATAGTCTGCATATATCCTT 60.353 42.308 8.54 0.00 0.00 3.36
351 352 7.925483 GGCAAGATAGTCTGCATATATCCTTAG 59.075 40.741 8.54 0.00 0.00 2.18
352 353 8.474025 GCAAGATAGTCTGCATATATCCTTAGT 58.526 37.037 8.54 0.00 0.00 2.24
354 355 9.989296 AAGATAGTCTGCATATATCCTTAGTCT 57.011 33.333 8.54 0.00 0.00 3.24
359 360 9.540538 AGTCTGCATATATCCTTAGTCTACATT 57.459 33.333 0.00 0.00 0.00 2.71
360 361 9.579768 GTCTGCATATATCCTTAGTCTACATTG 57.420 37.037 0.00 0.00 0.00 2.82
361 362 9.314133 TCTGCATATATCCTTAGTCTACATTGT 57.686 33.333 0.00 0.00 0.00 2.71
362 363 9.579768 CTGCATATATCCTTAGTCTACATTGTC 57.420 37.037 0.00 0.00 0.00 3.18
363 364 9.314133 TGCATATATCCTTAGTCTACATTGTCT 57.686 33.333 0.00 0.00 0.00 3.41
370 371 8.603898 TCCTTAGTCTACATTGTCTTTATGGA 57.396 34.615 0.00 0.00 0.00 3.41
371 372 8.696374 TCCTTAGTCTACATTGTCTTTATGGAG 58.304 37.037 0.00 0.00 35.63 3.86
372 373 7.928706 CCTTAGTCTACATTGTCTTTATGGAGG 59.071 40.741 0.00 0.00 35.14 4.30
379 380 9.593134 CTACATTGTCTTTATGGAGGATATAGC 57.407 37.037 0.00 0.00 31.50 2.97
385 386 7.017551 TGTCTTTATGGAGGATATAGCAATGGT 59.982 37.037 0.00 0.00 0.00 3.55
390 391 4.040829 TGGAGGATATAGCAATGGTCACTG 59.959 45.833 0.00 0.00 0.00 3.66
397 398 3.947910 AGCAATGGTCACTGGAAATTG 57.052 42.857 0.00 0.00 34.66 2.32
398 399 2.028748 AGCAATGGTCACTGGAAATTGC 60.029 45.455 9.96 9.96 46.09 3.56
423 424 7.085746 CAGGATATGCGCATGAATTTGATTAA 58.914 34.615 32.48 8.41 0.00 1.40
425 426 8.308931 AGGATATGCGCATGAATTTGATTAATT 58.691 29.630 32.48 3.48 39.15 1.40
498 500 0.674895 CAAGTGAGTAGGGTGCAGCC 60.675 60.000 27.66 27.66 0.00 4.85
507 509 2.116125 GGTGCAGCCTTCAGGGTT 59.884 61.111 4.03 0.00 44.81 4.11
522 524 1.675219 GGTTGAGGCGTAAGGACCA 59.325 57.895 0.00 0.00 38.28 4.02
632 634 1.332997 CAAGCTAAGCTGCCATGTAGC 59.667 52.381 10.34 10.34 39.62 3.58
696 698 7.278646 TGCATCTAGATCAATATTAATCGCACC 59.721 37.037 1.03 0.00 0.00 5.01
700 702 4.389992 AGATCAATATTAATCGCACCGCTG 59.610 41.667 0.00 0.00 0.00 5.18
710 712 1.153369 GCACCGCTGGATGAAGCTA 60.153 57.895 1.50 0.00 41.24 3.32
721 723 2.611292 GGATGAAGCTAGCATGTCACAC 59.389 50.000 18.83 13.43 0.00 3.82
722 724 1.713597 TGAAGCTAGCATGTCACACG 58.286 50.000 18.83 0.00 0.00 4.49
723 725 1.002366 GAAGCTAGCATGTCACACGG 58.998 55.000 18.83 0.00 0.00 4.94
724 726 0.321671 AAGCTAGCATGTCACACGGT 59.678 50.000 18.83 0.00 0.00 4.83
725 727 1.182667 AGCTAGCATGTCACACGGTA 58.817 50.000 18.83 0.00 0.00 4.02
726 728 1.757118 AGCTAGCATGTCACACGGTAT 59.243 47.619 18.83 0.00 0.00 2.73
727 729 1.860950 GCTAGCATGTCACACGGTATG 59.139 52.381 10.63 0.00 0.00 2.39
728 730 2.738643 GCTAGCATGTCACACGGTATGT 60.739 50.000 10.63 0.00 44.81 2.29
729 731 2.472695 AGCATGTCACACGGTATGTT 57.527 45.000 0.00 0.00 40.64 2.71
730 732 2.346803 AGCATGTCACACGGTATGTTC 58.653 47.619 0.00 0.00 40.64 3.18
731 733 2.028112 AGCATGTCACACGGTATGTTCT 60.028 45.455 0.00 0.00 40.64 3.01
732 734 2.094258 GCATGTCACACGGTATGTTCTG 59.906 50.000 0.00 0.00 40.64 3.02
745 747 7.696453 CACGGTATGTTCTGAAATACAAAATCC 59.304 37.037 16.88 5.37 32.02 3.01
771 773 6.154534 TGAACACTATTCCTACACATAGCAGT 59.845 38.462 0.00 0.00 0.00 4.40
804 806 3.829886 TTGAGTGCATCGAACCAATTC 57.170 42.857 0.00 0.00 0.00 2.17
809 811 2.083774 TGCATCGAACCAATTCACTCC 58.916 47.619 0.00 0.00 34.14 3.85
833 835 7.662258 TCCGTTGATAAAGTAAACAATCCAGAA 59.338 33.333 0.00 0.00 0.00 3.02
847 849 5.575606 ACAATCCAGAATGTCGTTAACGTAG 59.424 40.000 25.98 10.04 40.80 3.51
932 934 4.689612 TTTAGAGTCTCCACTTTGTGCT 57.310 40.909 0.00 0.00 30.63 4.40
933 935 4.689612 TTAGAGTCTCCACTTTGTGCTT 57.310 40.909 0.00 0.00 30.63 3.91
1178 1183 7.784633 TTTTGGAATTCAAGTCATGTTTTCC 57.215 32.000 7.93 0.00 39.50 3.13
1236 1241 0.107456 CAGTCAGATGGGAATCGGGG 59.893 60.000 0.00 0.00 0.00 5.73
1321 1326 6.768483 TGGAAACTGTGTCTCAATTGATAGA 58.232 36.000 8.96 0.53 0.00 1.98
1346 1351 5.650266 TCATATTTCGCAGGTAAATGGTTGT 59.350 36.000 0.00 0.00 0.00 3.32
1456 1461 0.609406 GGAACTCCAAGAGGCCAACC 60.609 60.000 5.01 0.00 33.35 3.77
1483 1488 3.074412 CAAGTGCTCGGTGGTTCTTTAT 58.926 45.455 0.00 0.00 0.00 1.40
1492 1497 3.021695 GGTGGTTCTTTATGGGCCTTAC 58.978 50.000 4.53 0.00 0.00 2.34
1655 1660 5.877012 TCAACCTGACAGCATATTCTCTTTC 59.123 40.000 0.00 0.00 0.00 2.62
1657 1662 4.225942 ACCTGACAGCATATTCTCTTTCCA 59.774 41.667 0.00 0.00 0.00 3.53
1776 1781 6.441274 GCCCATGTGTATTATTCATTGACAG 58.559 40.000 0.00 0.00 0.00 3.51
1818 1823 4.220821 TGAAGTAGGAAGAGGTTACAGCTG 59.779 45.833 13.48 13.48 0.00 4.24
1875 1880 7.579589 TTGGCAAATATTCTTCAAATTGACG 57.420 32.000 0.00 0.00 0.00 4.35
1876 1881 6.098679 TGGCAAATATTCTTCAAATTGACGG 58.901 36.000 0.00 0.00 0.00 4.79
1877 1882 5.005682 GGCAAATATTCTTCAAATTGACGGC 59.994 40.000 0.00 0.00 0.00 5.68
1944 2032 0.250513 GACGAGCCAATGGAGAACCT 59.749 55.000 2.05 0.00 37.04 3.50
1948 2036 1.815003 GAGCCAATGGAGAACCTTGTG 59.185 52.381 2.05 0.00 37.04 3.33
2141 2229 5.513141 CGTGTGAGTGATGTACTATTCTGTG 59.487 44.000 0.00 0.00 40.53 3.66
2189 2277 0.104120 CAGTGTTGGGACGTGTCTCA 59.896 55.000 0.00 0.00 38.52 3.27
2261 2349 5.248477 ACACCTAGTGTTGTTCTGTATGGAT 59.752 40.000 0.00 0.00 45.08 3.41
2269 2357 4.487714 TGTTCTGTATGGATGGAACTCC 57.512 45.455 0.00 0.00 38.86 3.85
2354 2442 2.328819 AGCATCACATCTTCTCAGGC 57.671 50.000 0.00 0.00 0.00 4.85
2496 2587 1.578206 CCTGAGAGCGACGTGTGAGA 61.578 60.000 0.00 0.00 0.00 3.27
2543 2634 2.724977 TCGACACAGTTGGAGATCAC 57.275 50.000 0.00 0.00 0.00 3.06
2564 2655 5.295787 TCACGCCATGATAAATGAGGTAAAC 59.704 40.000 0.00 0.00 29.99 2.01
2721 2812 8.546597 ACCAAAATCCACTTAAATTACATTGC 57.453 30.769 0.00 0.00 0.00 3.56
2744 2835 5.638657 GCTAATTTGTCAAAATCATGTGGCA 59.361 36.000 1.31 0.00 34.84 4.92
2808 2899 7.148239 GCCTCTAAGTGCACTATAATTGTGTTT 60.148 37.037 22.01 1.75 37.70 2.83
2821 2912 9.180678 CTATAATTGTGTTTCAAATTATCCGGC 57.819 33.333 0.00 0.00 39.62 6.13
2860 2951 9.121658 TGGTTAGTTTTAACATGTTCATGTGTA 57.878 29.630 15.85 10.10 40.77 2.90
2865 2956 7.647715 AGTTTTAACATGTTCATGTGTACTTGC 59.352 33.333 15.85 6.98 34.56 4.01
2877 2968 4.195416 TGTGTACTTGCAGACAATTGTGA 58.805 39.130 17.58 0.00 34.61 3.58
2917 3008 4.201950 CCAAATAGCATAGTGGTTGCAGAC 60.202 45.833 0.00 0.00 42.62 3.51
2924 3015 5.104941 AGCATAGTGGTTGCAGACTAATGTA 60.105 40.000 6.46 0.00 42.62 2.29
2995 3088 7.143514 ACATGTTTGTTTGTCTTTTGCAAAT 57.856 28.000 13.65 0.00 38.00 2.32
3004 3097 7.173218 TGTTTGTCTTTTGCAAATGTGGTAAAA 59.827 29.630 20.69 13.36 38.00 1.52
3022 3115 5.929992 GGTAAAACAGGTTAATTTTGGGAGC 59.070 40.000 0.00 0.00 30.80 4.70
3032 3125 1.640917 TTTTGGGAGCGGTAGAGAGT 58.359 50.000 0.00 0.00 0.00 3.24
3041 3134 4.924462 GGAGCGGTAGAGAGTATAAATTGC 59.076 45.833 0.00 0.00 0.00 3.56
3045 3138 5.634020 GCGGTAGAGAGTATAAATTGCGAAT 59.366 40.000 0.00 0.00 0.00 3.34
3082 3175 8.595362 AAGTTTATTTTCCCCTTCATCTTAGG 57.405 34.615 0.00 0.00 0.00 2.69
3131 3224 1.205893 CTCACAGAACCAGTAGCCTCC 59.794 57.143 0.00 0.00 0.00 4.30
3137 3230 1.628846 GAACCAGTAGCCTCCTTTGGA 59.371 52.381 0.00 0.00 32.18 3.53
3138 3231 1.742308 ACCAGTAGCCTCCTTTGGAA 58.258 50.000 0.00 0.00 32.18 3.53
3140 3233 2.649816 ACCAGTAGCCTCCTTTGGAATT 59.350 45.455 0.00 0.00 32.18 2.17
3141 3234 3.282885 CCAGTAGCCTCCTTTGGAATTC 58.717 50.000 0.00 0.00 30.36 2.17
3142 3235 3.282885 CAGTAGCCTCCTTTGGAATTCC 58.717 50.000 18.17 18.17 0.00 3.01
3143 3236 3.054065 CAGTAGCCTCCTTTGGAATTCCT 60.054 47.826 24.73 4.27 36.82 3.36
3144 3237 4.164221 CAGTAGCCTCCTTTGGAATTCCTA 59.836 45.833 24.73 15.31 36.82 2.94
3145 3238 4.978388 AGTAGCCTCCTTTGGAATTCCTAT 59.022 41.667 24.73 3.83 36.82 2.57
3146 3239 4.176120 AGCCTCCTTTGGAATTCCTATG 57.824 45.455 24.73 18.18 36.82 2.23
3147 3240 3.529319 AGCCTCCTTTGGAATTCCTATGT 59.471 43.478 24.73 1.70 36.82 2.29
3148 3241 4.726825 AGCCTCCTTTGGAATTCCTATGTA 59.273 41.667 24.73 6.49 36.82 2.29
3149 3242 5.373854 AGCCTCCTTTGGAATTCCTATGTAT 59.626 40.000 24.73 1.01 36.82 2.29
3150 3243 5.474876 GCCTCCTTTGGAATTCCTATGTATG 59.525 44.000 24.73 10.18 36.82 2.39
3151 3244 6.691491 GCCTCCTTTGGAATTCCTATGTATGA 60.691 42.308 24.73 11.16 36.82 2.15
3152 3245 6.939163 CCTCCTTTGGAATTCCTATGTATGAG 59.061 42.308 24.73 17.95 36.82 2.90
3153 3246 6.841601 TCCTTTGGAATTCCTATGTATGAGG 58.158 40.000 24.73 18.10 36.82 3.86
3154 3247 6.389869 TCCTTTGGAATTCCTATGTATGAGGT 59.610 38.462 24.73 0.00 35.40 3.85
3155 3248 7.570982 TCCTTTGGAATTCCTATGTATGAGGTA 59.429 37.037 24.73 7.73 35.40 3.08
3156 3249 8.217799 CCTTTGGAATTCCTATGTATGAGGTAA 58.782 37.037 24.73 3.65 35.40 2.85
3157 3250 9.627123 CTTTGGAATTCCTATGTATGAGGTAAA 57.373 33.333 24.73 10.94 35.40 2.01
3158 3251 9.627123 TTTGGAATTCCTATGTATGAGGTAAAG 57.373 33.333 24.73 0.00 35.40 1.85
3159 3252 8.331931 TGGAATTCCTATGTATGAGGTAAAGT 57.668 34.615 24.73 0.00 35.40 2.66
3160 3253 9.442062 TGGAATTCCTATGTATGAGGTAAAGTA 57.558 33.333 24.73 0.00 35.40 2.24
3161 3254 9.930693 GGAATTCCTATGTATGAGGTAAAGTAG 57.069 37.037 17.73 0.00 35.40 2.57
3162 3255 9.930693 GAATTCCTATGTATGAGGTAAAGTAGG 57.069 37.037 0.00 0.00 35.40 3.18
3163 3256 9.670442 AATTCCTATGTATGAGGTAAAGTAGGA 57.330 33.333 0.00 0.00 35.82 2.94
3164 3257 9.670442 ATTCCTATGTATGAGGTAAAGTAGGAA 57.330 33.333 11.58 11.58 45.70 3.36
3220 3320 9.734620 GGATTTTCAAAAGAAAAATTCCTTTGG 57.265 29.630 11.98 0.00 40.06 3.28
3225 3325 4.623932 AAGAAAAATTCCTTTGGAGCCC 57.376 40.909 0.00 0.00 31.21 5.19
3226 3326 3.861846 AGAAAAATTCCTTTGGAGCCCT 58.138 40.909 0.00 0.00 31.21 5.19
3227 3327 4.234550 AGAAAAATTCCTTTGGAGCCCTT 58.765 39.130 0.00 0.00 31.21 3.95
3228 3328 4.660303 AGAAAAATTCCTTTGGAGCCCTTT 59.340 37.500 0.00 0.00 31.21 3.11
3229 3329 4.356405 AAAATTCCTTTGGAGCCCTTTG 57.644 40.909 0.00 0.00 31.21 2.77
3230 3330 1.942776 ATTCCTTTGGAGCCCTTTGG 58.057 50.000 0.00 0.00 31.21 3.28
3231 3331 0.560688 TTCCTTTGGAGCCCTTTGGT 59.439 50.000 0.00 0.00 31.21 3.67
3232 3332 0.560688 TCCTTTGGAGCCCTTTGGTT 59.439 50.000 0.00 0.00 0.00 3.67
3233 3333 1.062505 TCCTTTGGAGCCCTTTGGTTT 60.063 47.619 0.00 0.00 0.00 3.27
3234 3334 1.070601 CCTTTGGAGCCCTTTGGTTTG 59.929 52.381 0.00 0.00 0.00 2.93
3235 3335 1.762370 CTTTGGAGCCCTTTGGTTTGT 59.238 47.619 0.00 0.00 0.00 2.83
3236 3336 2.757894 TTGGAGCCCTTTGGTTTGTA 57.242 45.000 0.00 0.00 0.00 2.41
3237 3337 2.286365 TGGAGCCCTTTGGTTTGTAG 57.714 50.000 0.00 0.00 0.00 2.74
3238 3338 1.777878 TGGAGCCCTTTGGTTTGTAGA 59.222 47.619 0.00 0.00 0.00 2.59
3239 3339 2.175931 TGGAGCCCTTTGGTTTGTAGAA 59.824 45.455 0.00 0.00 0.00 2.10
3240 3340 3.227614 GGAGCCCTTTGGTTTGTAGAAA 58.772 45.455 0.00 0.00 0.00 2.52
3241 3341 3.832490 GGAGCCCTTTGGTTTGTAGAAAT 59.168 43.478 0.00 0.00 0.00 2.17
3242 3342 4.321974 GGAGCCCTTTGGTTTGTAGAAATG 60.322 45.833 0.00 0.00 0.00 2.32
3243 3343 3.578282 AGCCCTTTGGTTTGTAGAAATGG 59.422 43.478 0.00 0.00 0.00 3.16
3244 3344 3.576550 GCCCTTTGGTTTGTAGAAATGGA 59.423 43.478 0.00 0.00 0.00 3.41
3245 3345 4.222810 GCCCTTTGGTTTGTAGAAATGGAT 59.777 41.667 0.00 0.00 0.00 3.41
3246 3346 5.279960 GCCCTTTGGTTTGTAGAAATGGATT 60.280 40.000 0.00 0.00 0.00 3.01
3247 3347 6.398095 CCCTTTGGTTTGTAGAAATGGATTC 58.602 40.000 0.00 0.00 38.39 2.52
3248 3348 6.398095 CCTTTGGTTTGTAGAAATGGATTCC 58.602 40.000 0.00 0.00 38.94 3.01
3249 3349 6.211384 CCTTTGGTTTGTAGAAATGGATTCCT 59.789 38.462 3.95 0.00 38.94 3.36
3250 3350 7.396055 CCTTTGGTTTGTAGAAATGGATTCCTA 59.604 37.037 3.95 0.00 38.94 2.94
3251 3351 8.893563 TTTGGTTTGTAGAAATGGATTCCTAT 57.106 30.769 3.95 0.00 38.94 2.57
3252 3352 8.893563 TTGGTTTGTAGAAATGGATTCCTATT 57.106 30.769 3.95 0.00 38.94 1.73
3253 3353 8.519799 TGGTTTGTAGAAATGGATTCCTATTC 57.480 34.615 3.95 8.33 38.94 1.75
3254 3354 7.559897 TGGTTTGTAGAAATGGATTCCTATTCC 59.440 37.037 13.88 4.81 38.94 3.01
3255 3355 7.780271 GGTTTGTAGAAATGGATTCCTATTCCT 59.220 37.037 13.88 5.21 38.94 3.36
3256 3356 9.847224 GTTTGTAGAAATGGATTCCTATTCCTA 57.153 33.333 13.88 4.47 38.94 2.94
3259 3359 9.170890 TGTAGAAATGGATTCCTATTCCTATGT 57.829 33.333 13.88 2.98 38.94 2.29
3262 3362 9.398921 AGAAATGGATTCCTATTCCTATGTACT 57.601 33.333 13.88 0.00 38.94 2.73
3263 3363 9.660180 GAAATGGATTCCTATTCCTATGTACTC 57.340 37.037 3.95 0.00 34.17 2.59
3264 3364 7.741554 ATGGATTCCTATTCCTATGTACTCC 57.258 40.000 3.95 0.00 34.17 3.85
3265 3365 6.023603 TGGATTCCTATTCCTATGTACTCCC 58.976 44.000 3.95 0.00 34.17 4.30
3266 3366 6.183361 TGGATTCCTATTCCTATGTACTCCCT 60.183 42.308 3.95 0.00 34.17 4.20
3267 3367 6.381707 GGATTCCTATTCCTATGTACTCCCTC 59.618 46.154 0.00 0.00 0.00 4.30
3268 3368 5.272405 TCCTATTCCTATGTACTCCCTCC 57.728 47.826 0.00 0.00 0.00 4.30
3269 3369 4.017808 CCTATTCCTATGTACTCCCTCCG 58.982 52.174 0.00 0.00 0.00 4.63
3270 3370 3.614568 ATTCCTATGTACTCCCTCCGT 57.385 47.619 0.00 0.00 0.00 4.69
3271 3371 2.653234 TCCTATGTACTCCCTCCGTC 57.347 55.000 0.00 0.00 0.00 4.79
3272 3372 1.144503 TCCTATGTACTCCCTCCGTCC 59.855 57.143 0.00 0.00 0.00 4.79
3273 3373 1.236628 CTATGTACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
3274 3374 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3275 3375 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
3276 3376 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3277 3377 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3278 3378 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3279 3379 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3280 3380 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3281 3381 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3282 3382 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3283 3383 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3284 3384 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3285 3385 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3286 3386 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3287 3387 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3288 3388 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3289 3389 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3290 3390 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3291 3391 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3292 3392 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3293 3393 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3294 3394 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3295 3395 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3296 3396 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3297 3397 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3298 3398 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3343 3443 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
3351 3451 9.132923 ACGTCTAGATACATCTCCTTTTATTGA 57.867 33.333 0.00 0.00 38.32 2.57
3365 3465 9.918630 CTCCTTTTATTGATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3372 3472 8.915871 ATTGATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3373 3473 6.851609 TGATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3374 3474 6.657117 TGATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3375 3475 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3376 3476 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3377 3477 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3378 3478 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3379 3479 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3380 3480 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3381 3481 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3382 3482 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3383 3483 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3384 3484 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3385 3485 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3386 3486 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
3387 3487 2.518825 CCGGACGGAGGGAGTAGG 60.519 72.222 4.40 0.00 37.50 3.18
3388 3488 2.593978 CGGACGGAGGGAGTAGGA 59.406 66.667 0.00 0.00 0.00 2.94
3389 3489 1.150992 CGGACGGAGGGAGTAGGAT 59.849 63.158 0.00 0.00 0.00 3.24
3390 3490 1.173444 CGGACGGAGGGAGTAGGATG 61.173 65.000 0.00 0.00 0.00 3.51
3391 3491 0.828343 GGACGGAGGGAGTAGGATGG 60.828 65.000 0.00 0.00 0.00 3.51
3392 3492 0.185416 GACGGAGGGAGTAGGATGGA 59.815 60.000 0.00 0.00 0.00 3.41
3393 3493 0.635009 ACGGAGGGAGTAGGATGGAA 59.365 55.000 0.00 0.00 0.00 3.53
3394 3494 1.041437 CGGAGGGAGTAGGATGGAAC 58.959 60.000 0.00 0.00 0.00 3.62
3395 3495 1.425694 GGAGGGAGTAGGATGGAACC 58.574 60.000 0.00 0.00 0.00 3.62
3396 3496 1.344087 GGAGGGAGTAGGATGGAACCA 60.344 57.143 0.00 0.00 0.00 3.67
3397 3497 2.478292 GAGGGAGTAGGATGGAACCAA 58.522 52.381 0.00 0.00 0.00 3.67
3398 3498 3.049344 GAGGGAGTAGGATGGAACCAAT 58.951 50.000 0.00 0.00 0.00 3.16
3399 3499 3.049344 AGGGAGTAGGATGGAACCAATC 58.951 50.000 0.00 0.00 0.00 2.67
3413 3513 6.605471 GGAACCAATCCTTCACCTTTTAAT 57.395 37.500 0.00 0.00 45.56 1.40
3414 3514 6.398095 GGAACCAATCCTTCACCTTTTAATG 58.602 40.000 0.00 0.00 45.56 1.90
3415 3515 6.358974 AACCAATCCTTCACCTTTTAATGG 57.641 37.500 0.00 0.00 0.00 3.16
3416 3516 5.650283 ACCAATCCTTCACCTTTTAATGGA 58.350 37.500 3.80 0.00 0.00 3.41
3417 3517 6.081356 ACCAATCCTTCACCTTTTAATGGAA 58.919 36.000 3.80 0.00 0.00 3.53
3418 3518 6.556874 ACCAATCCTTCACCTTTTAATGGAAA 59.443 34.615 3.80 0.00 0.00 3.13
3419 3519 7.071824 ACCAATCCTTCACCTTTTAATGGAAAA 59.928 33.333 3.80 0.00 35.67 2.29
3434 3534 9.920946 TTTAATGGAAAAGACATTAGCCTAGAT 57.079 29.630 0.00 0.00 40.64 1.98
3497 3597 6.413052 AGCCTAATATTCTGTGCATCCTATG 58.587 40.000 0.00 0.00 0.00 2.23
3529 3629 7.766278 ACATATGTTCAGAGTGTCAATAAGGAC 59.234 37.037 1.41 0.00 38.29 3.85
3536 3636 5.409826 CAGAGTGTCAATAAGGACCAAAGAC 59.590 44.000 0.00 0.00 36.97 3.01
3555 3656 6.920569 AAGACTTCAAGTTGAAATGTACGT 57.079 33.333 18.55 11.82 35.73 3.57
3557 3658 7.639162 AGACTTCAAGTTGAAATGTACGTAG 57.361 36.000 18.55 6.79 35.73 3.51
3629 3730 7.039313 AGTAGTAACTCATATGACGCATGAA 57.961 36.000 0.00 0.00 32.20 2.57
3630 3731 6.918569 AGTAGTAACTCATATGACGCATGAAC 59.081 38.462 0.00 0.00 32.20 3.18
3631 3732 5.907207 AGTAACTCATATGACGCATGAACT 58.093 37.500 0.00 0.00 32.20 3.01
3632 3733 7.039313 AGTAACTCATATGACGCATGAACTA 57.961 36.000 0.00 0.00 32.20 2.24
3635 3736 7.792374 AACTCATATGACGCATGAACTATTT 57.208 32.000 0.00 0.00 32.20 1.40
3636 3737 7.182361 ACTCATATGACGCATGAACTATTTG 57.818 36.000 0.00 0.00 32.20 2.32
3637 3738 5.989249 TCATATGACGCATGAACTATTTGC 58.011 37.500 0.00 0.00 29.55 3.68
3638 3739 5.759763 TCATATGACGCATGAACTATTTGCT 59.240 36.000 0.00 0.00 34.23 3.91
3639 3740 4.542662 ATGACGCATGAACTATTTGCTC 57.457 40.909 0.00 0.00 34.23 4.26
3721 3823 9.645059 CACTCTCAATTTAGTAGAACTCATGAA 57.355 33.333 0.00 0.00 0.00 2.57
3755 3857 9.586435 AATTTTTGCTCTTGCTAAATATGGTAC 57.414 29.630 0.00 0.00 41.76 3.34
3776 3878 7.720074 TGGTACGCCCAATTTTATATATTGACA 59.280 33.333 8.80 0.00 41.50 3.58
3813 3915 5.779529 TTGATCTTTTCTTTTGCAGCTCT 57.220 34.783 0.00 0.00 0.00 4.09
3860 3962 1.039856 AGGTCCATGTGTTTGTTGCC 58.960 50.000 0.00 0.00 0.00 4.52
3871 3973 3.313249 GTGTTTGTTGCCGTTAGGTTAGT 59.687 43.478 0.00 0.00 40.50 2.24
3964 4066 0.478072 AGGTGGTGGCAACTGATGAA 59.522 50.000 3.27 0.00 37.61 2.57
3968 4070 1.106285 GGTGGCAACTGATGAATCCC 58.894 55.000 0.00 0.00 37.61 3.85
3992 4094 1.830477 CTCCTAGAAGCTGGCAGACTT 59.170 52.381 20.86 19.97 0.00 3.01
4077 4179 6.426328 CCAACTGCTTCAGGTAGATGATAATC 59.574 42.308 0.00 0.00 33.63 1.75
4088 4190 6.443206 AGGTAGATGATAATCAATAGCTGGCT 59.557 38.462 0.00 0.00 32.70 4.75
4089 4191 7.037730 AGGTAGATGATAATCAATAGCTGGCTT 60.038 37.037 0.00 0.00 32.70 4.35
4130 4232 0.738389 CGTTGGCACCTGTGTTTTCT 59.262 50.000 0.00 0.00 0.00 2.52
4144 4246 4.962995 TGTGTTTTCTAGGGAGCTAGCTAT 59.037 41.667 19.38 9.52 0.00 2.97
4166 4268 3.838244 TTGATATAGGCTGGCTCGTTT 57.162 42.857 7.13 0.00 0.00 3.60
4183 4285 7.766738 TGGCTCGTTTCTTTTAATTTCCTTTTT 59.233 29.630 0.00 0.00 0.00 1.94
4273 4375 5.875224 TCTATGTCTTGGAACATGGTTCAA 58.125 37.500 3.94 3.94 40.08 2.69
4274 4376 4.853924 ATGTCTTGGAACATGGTTCAAC 57.146 40.909 0.00 0.00 38.43 3.18
4276 4378 3.631686 TGTCTTGGAACATGGTTCAACAG 59.368 43.478 0.00 0.00 39.30 3.16
4297 4399 7.611213 ACAGTTTGGTTCTAACATAGTATGC 57.389 36.000 10.16 0.00 0.00 3.14
4304 4406 8.978874 TGGTTCTAACATAGTATGCAAATGAT 57.021 30.769 10.16 0.00 0.00 2.45
4318 4420 5.584442 TGCAAATGATGATTGATACAGCAC 58.416 37.500 0.00 0.00 36.52 4.40
4346 4448 0.106335 CAGAGGACCATAGGCTGCAG 59.894 60.000 10.11 10.11 0.00 4.41
4375 4477 3.662247 AGTACCCTTTCAGAACAGACG 57.338 47.619 0.00 0.00 0.00 4.18
4376 4478 2.299297 AGTACCCTTTCAGAACAGACGG 59.701 50.000 0.00 0.00 0.00 4.79
4382 4484 2.270352 TTCAGAACAGACGGGCAATT 57.730 45.000 0.00 0.00 0.00 2.32
4425 4529 6.038271 TGTGAAGATTGATTGCATCAGATCAG 59.962 38.462 0.00 0.00 40.94 2.90
4470 4574 2.854185 GCAATACAATCGCTGCCTTTTC 59.146 45.455 0.00 0.00 0.00 2.29
4487 4591 5.170748 CCTTTTCTGGTTATGTTCAATGCC 58.829 41.667 0.00 0.00 0.00 4.40
4496 4600 5.393027 GGTTATGTTCAATGCCTGAATTCGT 60.393 40.000 0.04 0.00 45.74 3.85
4512 4616 6.887368 TGAATTCGTTGTGTTTGATCACTAG 58.113 36.000 0.00 0.00 38.90 2.57
4517 4621 5.690409 TCGTTGTGTTTGATCACTAGTTCTC 59.310 40.000 0.00 0.00 38.90 2.87
4628 4732 7.038870 TGTCATACTAACTTTTGTGCCCTACTA 60.039 37.037 0.00 0.00 0.00 1.82
4654 4758 4.681025 TGATGCATTCTTTCTTTGCGAAAC 59.319 37.500 0.00 0.00 39.23 2.78
4694 4799 6.174720 TGGCCATACTTACAAGATCCTAAG 57.825 41.667 0.00 0.00 0.00 2.18
4714 4819 9.653287 TCCTAAGTCATTACTTTTGTGATACAG 57.347 33.333 0.00 0.00 43.60 2.74
4720 4825 6.761242 TCATTACTTTTGTGATACAGGGATCG 59.239 38.462 0.00 0.00 0.00 3.69
4737 4845 5.834204 AGGGATCGCTACTCTAGTTTTGTAT 59.166 40.000 11.13 0.00 0.00 2.29
4778 4886 3.349927 ACCACCGCCCTAGTAAAATTTC 58.650 45.455 0.00 0.00 0.00 2.17
4781 4889 4.218852 CCACCGCCCTAGTAAAATTTCAAA 59.781 41.667 0.00 0.00 0.00 2.69
4783 4891 6.394809 CACCGCCCTAGTAAAATTTCAAATT 58.605 36.000 0.00 0.00 0.00 1.82
4814 4922 2.124983 CATGAGTGAGCCGGTGGG 60.125 66.667 1.90 0.00 0.00 4.61
4890 4998 0.542333 GGGACCTAAGCCTTGTCTCC 59.458 60.000 0.00 0.00 0.00 3.71
4921 5029 3.244078 TGCTAACAGATTCGGGCGATAAT 60.244 43.478 0.00 0.00 0.00 1.28
4922 5030 3.123621 GCTAACAGATTCGGGCGATAATG 59.876 47.826 0.00 0.00 0.00 1.90
4923 5031 1.512926 ACAGATTCGGGCGATAATGC 58.487 50.000 0.00 0.00 0.00 3.56
4952 5060 2.039818 TTGGTTCGGTTTGCACTACA 57.960 45.000 0.00 0.00 0.00 2.74
4958 5066 1.066430 TCGGTTTGCACTACATCCTCC 60.066 52.381 0.00 0.00 0.00 4.30
4961 5069 2.271800 GTTTGCACTACATCCTCCTCG 58.728 52.381 0.00 0.00 0.00 4.63
4970 5078 1.195115 CATCCTCCTCGGGAAGACAA 58.805 55.000 0.00 0.00 39.02 3.18
4972 5080 0.178944 TCCTCCTCGGGAAGACAACA 60.179 55.000 0.00 0.00 31.67 3.33
4975 5083 0.761323 TCCTCGGGAAGACAACACCA 60.761 55.000 0.00 0.00 0.00 4.17
5008 5116 0.530744 CGTTCTTCGGGGATCTCACA 59.469 55.000 0.00 0.00 35.71 3.58
5018 5126 0.326264 GGATCTCACAGCCAACCAGT 59.674 55.000 0.00 0.00 0.00 4.00
5019 5127 1.555075 GGATCTCACAGCCAACCAGTA 59.445 52.381 0.00 0.00 0.00 2.74
5042 5150 0.942962 CTTCGCTTCATCCAGATGCC 59.057 55.000 2.63 0.00 42.68 4.40
5050 5158 1.918262 TCATCCAGATGCCAACTTCCT 59.082 47.619 2.63 0.00 38.65 3.36
5053 5161 1.280133 TCCAGATGCCAACTTCCTCAG 59.720 52.381 0.00 0.00 0.00 3.35
5055 5163 0.990374 AGATGCCAACTTCCTCAGCT 59.010 50.000 0.00 0.00 0.00 4.24
5056 5164 1.353694 AGATGCCAACTTCCTCAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
5058 5166 0.767375 TGCCAACTTCCTCAGCTTCT 59.233 50.000 0.00 0.00 0.00 2.85
5059 5167 1.163554 GCCAACTTCCTCAGCTTCTG 58.836 55.000 0.00 0.00 0.00 3.02
5060 5168 1.818642 CCAACTTCCTCAGCTTCTGG 58.181 55.000 0.00 0.00 31.51 3.86
5061 5169 1.163554 CAACTTCCTCAGCTTCTGGC 58.836 55.000 0.00 0.00 42.19 4.85
5072 5180 2.770164 GCTTCTGGCTTACCTCTCAA 57.230 50.000 0.00 0.00 38.06 3.02
5073 5181 2.351455 GCTTCTGGCTTACCTCTCAAC 58.649 52.381 0.00 0.00 38.06 3.18
5074 5182 2.937433 GCTTCTGGCTTACCTCTCAACC 60.937 54.545 0.00 0.00 38.06 3.77
5075 5183 0.895530 TCTGGCTTACCTCTCAACCG 59.104 55.000 0.00 0.00 36.63 4.44
5076 5184 0.741221 CTGGCTTACCTCTCAACCGC 60.741 60.000 0.00 0.00 36.63 5.68
5077 5185 1.810030 GGCTTACCTCTCAACCGCG 60.810 63.158 0.00 0.00 0.00 6.46
5078 5186 1.214589 GCTTACCTCTCAACCGCGA 59.785 57.895 8.23 0.00 0.00 5.87
5079 5187 0.179108 GCTTACCTCTCAACCGCGAT 60.179 55.000 8.23 0.00 0.00 4.58
5080 5188 1.560923 CTTACCTCTCAACCGCGATG 58.439 55.000 8.23 6.60 0.00 3.84
5081 5189 0.459585 TTACCTCTCAACCGCGATGC 60.460 55.000 8.23 0.00 0.00 3.91
5082 5190 1.320344 TACCTCTCAACCGCGATGCT 61.320 55.000 8.23 0.00 0.00 3.79
5123 5231 2.040544 CCATCGCTCCACCACAACC 61.041 63.158 0.00 0.00 0.00 3.77
5235 5344 1.000955 CACCGTGTCTCTGGTTTAGCT 59.999 52.381 0.00 0.00 35.96 3.32
5237 5346 2.069273 CCGTGTCTCTGGTTTAGCTTG 58.931 52.381 0.00 0.00 0.00 4.01
5240 5349 4.495422 CGTGTCTCTGGTTTAGCTTGTAT 58.505 43.478 0.00 0.00 0.00 2.29
5243 5352 6.588756 CGTGTCTCTGGTTTAGCTTGTATTTA 59.411 38.462 0.00 0.00 0.00 1.40
5244 5353 7.277981 CGTGTCTCTGGTTTAGCTTGTATTTAT 59.722 37.037 0.00 0.00 0.00 1.40
5247 5356 7.910683 GTCTCTGGTTTAGCTTGTATTTATTGC 59.089 37.037 0.00 0.00 0.00 3.56
5281 5390 6.397480 CGCATCACGTTTTCATTAGTGTTTTC 60.397 38.462 0.00 0.00 36.87 2.29
5282 5391 6.416455 GCATCACGTTTTCATTAGTGTTTTCA 59.584 34.615 0.00 0.00 36.16 2.69
5316 5425 7.014615 GTGGTAGGGGTTTTCGTATCTTATAGA 59.985 40.741 0.00 0.00 0.00 1.98
5319 5428 7.613551 AGGGGTTTTCGTATCTTATAGATGT 57.386 36.000 0.00 0.00 35.37 3.06
5334 5443 8.087750 TCTTATAGATGTTGTTTTGCCCTTTTG 58.912 33.333 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.013490 CAATACTTTAACTGCAAGATGTAATGC 57.987 33.333 0.00 0.00 42.86 3.56
20 21 9.502091 ACTCAATACTTTAACTGCAAGATGTAA 57.498 29.630 0.00 0.00 37.43 2.41
22 23 7.986085 ACTCAATACTTTAACTGCAAGATGT 57.014 32.000 0.00 0.00 37.43 3.06
23 24 9.155975 AGTACTCAATACTTTAACTGCAAGATG 57.844 33.333 0.00 0.00 41.71 2.90
40 41 9.593565 TCCTGATCAGTATTCATAGTACTCAAT 57.406 33.333 21.11 0.00 30.24 2.57
41 42 8.996651 TCCTGATCAGTATTCATAGTACTCAA 57.003 34.615 21.11 0.00 30.24 3.02
42 43 8.996651 TTCCTGATCAGTATTCATAGTACTCA 57.003 34.615 21.11 0.00 30.24 3.41
47 48 9.722184 CATGATTTCCTGATCAGTATTCATAGT 57.278 33.333 21.11 4.52 39.26 2.12
48 49 9.722184 ACATGATTTCCTGATCAGTATTCATAG 57.278 33.333 21.11 17.52 39.26 2.23
49 50 9.498176 CACATGATTTCCTGATCAGTATTCATA 57.502 33.333 21.11 2.97 39.26 2.15
50 51 7.040617 GCACATGATTTCCTGATCAGTATTCAT 60.041 37.037 21.11 19.05 39.26 2.57
51 52 6.261603 GCACATGATTTCCTGATCAGTATTCA 59.738 38.462 21.11 17.92 39.26 2.57
52 53 6.293845 GGCACATGATTTCCTGATCAGTATTC 60.294 42.308 21.11 13.71 39.26 1.75
53 54 5.533903 GGCACATGATTTCCTGATCAGTATT 59.466 40.000 21.11 5.71 39.26 1.89
54 55 5.068636 GGCACATGATTTCCTGATCAGTAT 58.931 41.667 21.11 11.26 39.26 2.12
55 56 4.454678 GGCACATGATTTCCTGATCAGTA 58.545 43.478 21.11 2.36 39.26 2.74
56 57 3.285484 GGCACATGATTTCCTGATCAGT 58.715 45.455 21.11 2.39 39.26 3.41
57 58 2.621998 GGGCACATGATTTCCTGATCAG 59.378 50.000 16.24 16.24 39.26 2.90
58 59 2.025131 TGGGCACATGATTTCCTGATCA 60.025 45.455 0.00 0.00 40.11 2.92
59 60 2.360165 GTGGGCACATGATTTCCTGATC 59.640 50.000 0.00 0.00 0.00 2.92
60 61 2.381911 GTGGGCACATGATTTCCTGAT 58.618 47.619 0.00 0.00 0.00 2.90
61 62 1.616725 GGTGGGCACATGATTTCCTGA 60.617 52.381 0.00 0.00 0.00 3.86
62 63 0.819582 GGTGGGCACATGATTTCCTG 59.180 55.000 0.00 0.00 0.00 3.86
63 64 0.409092 TGGTGGGCACATGATTTCCT 59.591 50.000 0.00 0.00 0.00 3.36
64 65 1.488390 ATGGTGGGCACATGATTTCC 58.512 50.000 0.00 0.00 0.00 3.13
65 66 2.896168 CAATGGTGGGCACATGATTTC 58.104 47.619 0.00 0.00 0.00 2.17
66 67 1.065998 GCAATGGTGGGCACATGATTT 60.066 47.619 0.00 0.00 0.00 2.17
67 68 0.538118 GCAATGGTGGGCACATGATT 59.462 50.000 0.00 0.00 0.00 2.57
68 69 0.615261 TGCAATGGTGGGCACATGAT 60.615 50.000 0.00 0.00 34.58 2.45
69 70 0.615261 ATGCAATGGTGGGCACATGA 60.615 50.000 0.00 0.00 43.75 3.07
70 71 0.250793 AATGCAATGGTGGGCACATG 59.749 50.000 0.00 0.00 43.75 3.21
71 72 0.985760 AAATGCAATGGTGGGCACAT 59.014 45.000 0.00 0.00 43.75 3.21
72 73 0.321021 GAAATGCAATGGTGGGCACA 59.679 50.000 0.00 0.00 43.75 4.57
73 74 0.321021 TGAAATGCAATGGTGGGCAC 59.679 50.000 0.00 0.00 43.75 5.01
74 75 0.609151 CTGAAATGCAATGGTGGGCA 59.391 50.000 0.00 0.00 45.23 5.36
75 76 0.108041 CCTGAAATGCAATGGTGGGC 60.108 55.000 0.00 0.00 0.00 5.36
76 77 1.066716 CACCTGAAATGCAATGGTGGG 60.067 52.381 14.85 6.33 43.01 4.61
77 78 1.673626 GCACCTGAAATGCAATGGTGG 60.674 52.381 20.41 11.19 45.79 4.61
79 80 0.609662 GGCACCTGAAATGCAATGGT 59.390 50.000 0.00 0.00 45.27 3.55
80 81 0.458889 CGGCACCTGAAATGCAATGG 60.459 55.000 0.00 0.00 45.27 3.16
81 82 0.527113 TCGGCACCTGAAATGCAATG 59.473 50.000 0.00 0.00 45.27 2.82
82 83 1.067635 GTTCGGCACCTGAAATGCAAT 60.068 47.619 0.00 0.00 45.27 3.56
83 84 0.313672 GTTCGGCACCTGAAATGCAA 59.686 50.000 0.00 0.00 45.27 4.08
84 85 1.851021 CGTTCGGCACCTGAAATGCA 61.851 55.000 0.00 0.00 45.27 3.96
85 86 1.154225 CGTTCGGCACCTGAAATGC 60.154 57.895 0.00 0.00 42.62 3.56
86 87 1.062587 GATCGTTCGGCACCTGAAATG 59.937 52.381 0.00 0.00 0.00 2.32
87 88 1.066143 AGATCGTTCGGCACCTGAAAT 60.066 47.619 0.00 0.00 0.00 2.17
88 89 0.320374 AGATCGTTCGGCACCTGAAA 59.680 50.000 0.00 0.00 0.00 2.69
89 90 0.320374 AAGATCGTTCGGCACCTGAA 59.680 50.000 0.00 0.00 0.00 3.02
90 91 0.389817 CAAGATCGTTCGGCACCTGA 60.390 55.000 0.00 0.00 0.00 3.86
91 92 1.970917 GCAAGATCGTTCGGCACCTG 61.971 60.000 7.89 0.00 0.00 4.00
92 93 1.741770 GCAAGATCGTTCGGCACCT 60.742 57.895 7.89 0.00 0.00 4.00
93 94 2.750888 GGCAAGATCGTTCGGCACC 61.751 63.158 12.90 0.57 0.00 5.01
94 95 2.785258 GGCAAGATCGTTCGGCAC 59.215 61.111 12.90 2.52 0.00 5.01
95 96 2.773397 TTCGGCAAGATCGTTCGGCA 62.773 55.000 12.90 0.00 0.00 5.69
96 97 1.429148 ATTCGGCAAGATCGTTCGGC 61.429 55.000 5.06 5.06 0.00 5.54
97 98 0.301687 CATTCGGCAAGATCGTTCGG 59.698 55.000 0.00 0.00 0.00 4.30
98 99 0.315382 GCATTCGGCAAGATCGTTCG 60.315 55.000 0.00 0.00 43.97 3.95
99 100 0.315382 CGCATTCGGCAAGATCGTTC 60.315 55.000 0.00 0.00 45.17 3.95
100 101 1.715585 CGCATTCGGCAAGATCGTT 59.284 52.632 0.00 0.00 45.17 3.85
101 102 2.813179 GCGCATTCGGCAAGATCGT 61.813 57.895 0.30 0.00 45.17 3.73
102 103 2.052766 GCGCATTCGGCAAGATCG 60.053 61.111 0.30 0.00 45.17 3.69
124 125 3.491619 CGGACAAGTGTATCCTCATGGAG 60.492 52.174 0.00 0.00 46.91 3.86
126 127 2.168521 ACGGACAAGTGTATCCTCATGG 59.831 50.000 0.00 0.00 32.33 3.66
127 128 3.131223 AGACGGACAAGTGTATCCTCATG 59.869 47.826 0.00 0.00 32.33 3.07
128 129 3.366396 AGACGGACAAGTGTATCCTCAT 58.634 45.455 0.00 0.00 32.33 2.90
259 260 1.559368 TTGCACATGATCAAAGGGGG 58.441 50.000 0.00 0.00 0.00 5.40
270 271 2.787601 AGTTGCTCTGTTTGCACATG 57.212 45.000 0.00 0.00 40.40 3.21
283 284 6.088016 TCTGTTTTGCATATGAAAGTTGCT 57.912 33.333 6.97 0.00 37.28 3.91
318 319 3.444742 TGCAGACTATCTTGCCCAAATTG 59.555 43.478 0.00 0.00 0.00 2.32
344 345 9.213777 TCCATAAAGACAATGTAGACTAAGGAT 57.786 33.333 0.00 0.00 0.00 3.24
345 346 8.603898 TCCATAAAGACAATGTAGACTAAGGA 57.396 34.615 0.00 0.00 0.00 3.36
346 347 7.928706 CCTCCATAAAGACAATGTAGACTAAGG 59.071 40.741 0.00 0.00 0.00 2.69
347 348 8.696374 TCCTCCATAAAGACAATGTAGACTAAG 58.304 37.037 0.00 0.00 0.00 2.18
349 350 8.783660 ATCCTCCATAAAGACAATGTAGACTA 57.216 34.615 0.00 0.00 0.00 2.59
353 354 9.593134 GCTATATCCTCCATAAAGACAATGTAG 57.407 37.037 0.00 0.00 0.00 2.74
354 355 9.100197 TGCTATATCCTCCATAAAGACAATGTA 57.900 33.333 0.00 0.00 0.00 2.29
355 356 7.977818 TGCTATATCCTCCATAAAGACAATGT 58.022 34.615 0.00 0.00 0.00 2.71
356 357 8.853077 TTGCTATATCCTCCATAAAGACAATG 57.147 34.615 0.00 0.00 0.00 2.82
357 358 9.458727 CATTGCTATATCCTCCATAAAGACAAT 57.541 33.333 0.00 0.00 0.00 2.71
358 359 7.884877 CCATTGCTATATCCTCCATAAAGACAA 59.115 37.037 0.00 0.00 0.00 3.18
359 360 7.017551 ACCATTGCTATATCCTCCATAAAGACA 59.982 37.037 0.00 0.00 0.00 3.41
360 361 7.398024 ACCATTGCTATATCCTCCATAAAGAC 58.602 38.462 0.00 0.00 0.00 3.01
361 362 7.237471 TGACCATTGCTATATCCTCCATAAAGA 59.763 37.037 0.00 0.00 0.00 2.52
362 363 7.335422 GTGACCATTGCTATATCCTCCATAAAG 59.665 40.741 0.00 0.00 0.00 1.85
363 364 7.017551 AGTGACCATTGCTATATCCTCCATAAA 59.982 37.037 0.00 0.00 0.00 1.40
364 365 6.501805 AGTGACCATTGCTATATCCTCCATAA 59.498 38.462 0.00 0.00 0.00 1.90
365 366 6.025539 AGTGACCATTGCTATATCCTCCATA 58.974 40.000 0.00 0.00 0.00 2.74
366 367 4.848660 AGTGACCATTGCTATATCCTCCAT 59.151 41.667 0.00 0.00 0.00 3.41
367 368 4.040829 CAGTGACCATTGCTATATCCTCCA 59.959 45.833 0.00 0.00 0.00 3.86
368 369 4.564406 CCAGTGACCATTGCTATATCCTCC 60.564 50.000 0.00 0.00 0.00 4.30
369 370 4.284490 TCCAGTGACCATTGCTATATCCTC 59.716 45.833 0.00 0.00 0.00 3.71
370 371 4.234550 TCCAGTGACCATTGCTATATCCT 58.765 43.478 0.00 0.00 0.00 3.24
371 372 4.623932 TCCAGTGACCATTGCTATATCC 57.376 45.455 0.00 0.00 0.00 2.59
372 373 7.365741 CAATTTCCAGTGACCATTGCTATATC 58.634 38.462 0.00 0.00 0.00 1.63
379 380 3.581755 CTGCAATTTCCAGTGACCATTG 58.418 45.455 0.00 0.00 0.00 2.82
398 399 4.492791 TCAAATTCATGCGCATATCCTG 57.507 40.909 24.84 12.53 0.00 3.86
431 432 8.726988 GCATATATCCTTAGCCGTTTTCATTAA 58.273 33.333 0.00 0.00 0.00 1.40
435 436 5.616270 TGCATATATCCTTAGCCGTTTTCA 58.384 37.500 0.00 0.00 0.00 2.69
436 437 5.122396 CCTGCATATATCCTTAGCCGTTTTC 59.878 44.000 0.00 0.00 0.00 2.29
438 439 4.286032 TCCTGCATATATCCTTAGCCGTTT 59.714 41.667 0.00 0.00 0.00 3.60
441 442 3.449018 AGTCCTGCATATATCCTTAGCCG 59.551 47.826 0.00 0.00 0.00 5.52
442 443 5.428184 AAGTCCTGCATATATCCTTAGCC 57.572 43.478 0.00 0.00 0.00 3.93
498 500 1.676014 CCTTACGCCTCAACCCTGAAG 60.676 57.143 0.00 0.00 0.00 3.02
507 509 0.981183 ATGTTGGTCCTTACGCCTCA 59.019 50.000 0.00 0.00 0.00 3.86
564 566 7.266400 AGATAAAAACTAGTAGCACCTACAGC 58.734 38.462 0.00 0.00 39.22 4.40
632 634 3.803778 GCTTTGGGAAAGTTGTGAATGTG 59.196 43.478 0.00 0.00 40.64 3.21
691 693 2.906182 TAGCTTCATCCAGCGGTGCG 62.906 60.000 9.63 2.75 45.24 5.34
696 698 0.866427 CATGCTAGCTTCATCCAGCG 59.134 55.000 17.23 0.00 45.24 5.18
700 702 2.611292 GTGTGACATGCTAGCTTCATCC 59.389 50.000 17.23 5.89 0.00 3.51
710 712 2.028112 AGAACATACCGTGTGACATGCT 60.028 45.455 1.81 0.00 41.14 3.79
721 723 7.910162 CAGGATTTTGTATTTCAGAACATACCG 59.090 37.037 10.51 0.00 0.00 4.02
722 724 8.956426 TCAGGATTTTGTATTTCAGAACATACC 58.044 33.333 10.51 0.00 0.00 2.73
725 727 8.859090 TGTTCAGGATTTTGTATTTCAGAACAT 58.141 29.630 0.00 0.00 37.35 2.71
726 728 8.134895 GTGTTCAGGATTTTGTATTTCAGAACA 58.865 33.333 0.00 0.00 39.19 3.18
727 729 8.352942 AGTGTTCAGGATTTTGTATTTCAGAAC 58.647 33.333 0.00 0.00 34.02 3.01
728 730 8.463930 AGTGTTCAGGATTTTGTATTTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
729 731 9.739276 ATAGTGTTCAGGATTTTGTATTTCAGA 57.261 29.630 0.00 0.00 0.00 3.27
732 734 9.788960 GGAATAGTGTTCAGGATTTTGTATTTC 57.211 33.333 1.81 0.00 0.00 2.17
745 747 6.573434 TGCTATGTGTAGGAATAGTGTTCAG 58.427 40.000 1.81 0.00 0.00 3.02
771 773 5.576774 CGATGCACTCAATGTACTGTAGAAA 59.423 40.000 0.00 0.00 0.00 2.52
804 806 7.094975 TGGATTGTTTACTTTATCAACGGAGTG 60.095 37.037 0.00 0.00 45.00 3.51
809 811 9.277565 CATTCTGGATTGTTTACTTTATCAACG 57.722 33.333 0.00 0.00 0.00 4.10
833 835 3.840468 TGCACATCTACGTTAACGACAT 58.160 40.909 33.06 17.82 43.02 3.06
847 849 6.914757 GCAAGTTTTCCTCTATTATGCACATC 59.085 38.462 0.00 0.00 0.00 3.06
1109 1112 2.894902 TGCAAAGTCGTTACACAGTCA 58.105 42.857 0.00 0.00 0.00 3.41
1168 1173 4.159321 TCTTTGTGCTTGTGGAAAACATGA 59.841 37.500 0.00 0.00 38.99 3.07
1178 1183 4.318332 TCACCTCTATCTTTGTGCTTGTG 58.682 43.478 0.00 0.00 0.00 3.33
1236 1241 2.369394 GTGGAAGATGGGGTGATGAAC 58.631 52.381 0.00 0.00 0.00 3.18
1321 1326 6.321181 ACAACCATTTACCTGCGAAATATGAT 59.679 34.615 0.00 0.00 0.00 2.45
1331 1336 4.839668 TGTACAACAACCATTTACCTGC 57.160 40.909 0.00 0.00 0.00 4.85
1456 1461 4.988598 ACCGAGCACTTGCCGTGG 62.989 66.667 0.00 0.10 43.97 4.94
1483 1488 0.404040 CCTTGTTCTGGTAAGGCCCA 59.596 55.000 0.00 0.00 37.27 5.36
1492 1497 2.095059 CCTCGCAATTTCCTTGTTCTGG 60.095 50.000 0.00 0.00 37.18 3.86
1620 1625 4.757149 GCTGTCAGGTTGAATATATGGGAC 59.243 45.833 1.14 0.00 0.00 4.46
1633 1638 5.189180 GGAAAGAGAATATGCTGTCAGGTT 58.811 41.667 1.14 0.00 0.00 3.50
1776 1781 5.065218 ACTTCAGGTGCGACATTATCAAATC 59.935 40.000 0.00 0.00 0.00 2.17
1875 1880 2.799412 CAGATTAGCTCTGTGAATCGCC 59.201 50.000 0.00 0.00 45.42 5.54
1924 2012 0.250513 GGTTCTCCATTGGCTCGTCT 59.749 55.000 0.00 0.00 0.00 4.18
1944 2032 4.439305 GCTCCTGCAATGATAAACACAA 57.561 40.909 0.00 0.00 39.41 3.33
2141 2229 1.876156 CTGCTGTTCTTCTTGTGGTCC 59.124 52.381 0.00 0.00 0.00 4.46
2189 2277 1.449246 GCAGAGTCATCAAGCGCCT 60.449 57.895 2.29 0.00 0.00 5.52
2261 2349 2.182827 CCACATCTGAGAGGAGTTCCA 58.817 52.381 0.00 0.00 38.89 3.53
2269 2357 1.728971 GCAACGTTCCACATCTGAGAG 59.271 52.381 0.00 0.00 0.00 3.20
2354 2442 0.876777 TGTCCAACGCGGTTGTACAG 60.877 55.000 12.47 0.55 37.43 2.74
2421 2512 6.310711 ACCGAGTTAGAATCAATCGAAACTTC 59.689 38.462 0.00 0.00 38.47 3.01
2514 2605 3.312421 CCAACTGTGTCGAAACTGTCAAT 59.688 43.478 17.46 1.08 31.79 2.57
2543 2634 4.821805 AGGTTTACCTCATTTATCATGGCG 59.178 41.667 0.00 0.00 44.77 5.69
2591 2682 9.042450 TCTCACTAGGAATGAAATAACTTACCA 57.958 33.333 0.00 0.00 0.00 3.25
2613 2704 2.943033 CAATGACATGCTGCTCATCTCA 59.057 45.455 0.00 1.56 35.15 3.27
2721 2812 7.655236 TTGCCACATGATTTTGACAAATTAG 57.345 32.000 0.00 0.00 32.35 1.73
2727 2818 3.181468 TGCTTTGCCACATGATTTTGACA 60.181 39.130 0.00 0.00 0.00 3.58
2808 2899 3.476552 GACATGAGGCCGGATAATTTGA 58.523 45.455 5.05 0.00 0.00 2.69
2821 2912 1.909302 ACTAACCACCAGGACATGAGG 59.091 52.381 0.00 0.00 38.69 3.86
2960 3052 6.410540 ACAAACAAACATGTTTTACCACCAT 58.589 32.000 21.10 0.00 39.68 3.55
2976 3068 5.471456 ACCACATTTGCAAAAGACAAACAAA 59.529 32.000 20.40 0.00 39.65 2.83
2990 3083 7.722795 AATTAACCTGTTTTACCACATTTGC 57.277 32.000 0.00 0.00 0.00 3.68
2995 3088 6.383147 TCCCAAAATTAACCTGTTTTACCACA 59.617 34.615 0.00 0.00 0.00 4.17
3004 3097 2.167662 CCGCTCCCAAAATTAACCTGT 58.832 47.619 0.00 0.00 0.00 4.00
3022 3115 6.641314 ACATTCGCAATTTATACTCTCTACCG 59.359 38.462 0.00 0.00 0.00 4.02
3084 3177 0.257039 AGAGGCATGGGGATGTCAAC 59.743 55.000 0.00 0.00 0.00 3.18
3085 3178 1.002069 AAGAGGCATGGGGATGTCAA 58.998 50.000 0.00 0.00 0.00 3.18
3086 3179 0.256752 CAAGAGGCATGGGGATGTCA 59.743 55.000 0.00 0.00 0.00 3.58
3121 3214 3.054065 AGGAATTCCAAAGGAGGCTACTG 60.054 47.826 26.22 0.00 38.89 2.74
3131 3224 9.627123 TTTACCTCATACATAGGAATTCCAAAG 57.373 33.333 26.22 16.28 37.57 2.77
3137 3230 9.670442 TCCTACTTTACCTCATACATAGGAATT 57.330 33.333 0.00 0.00 35.22 2.17
3138 3231 9.670442 TTCCTACTTTACCTCATACATAGGAAT 57.330 33.333 5.51 0.00 40.80 3.01
3144 3237 9.670442 TTCCTATTCCTACTTTACCTCATACAT 57.330 33.333 0.00 0.00 0.00 2.29
3145 3238 9.670442 ATTCCTATTCCTACTTTACCTCATACA 57.330 33.333 0.00 0.00 0.00 2.29
3149 3242 9.681062 CAAAATTCCTATTCCTACTTTACCTCA 57.319 33.333 0.00 0.00 0.00 3.86
3150 3243 9.682465 ACAAAATTCCTATTCCTACTTTACCTC 57.318 33.333 0.00 0.00 0.00 3.85
3212 3312 0.560688 ACCAAAGGGCTCCAAAGGAA 59.439 50.000 0.00 0.00 37.90 3.36
3220 3320 4.321974 CCATTTCTACAAACCAAAGGGCTC 60.322 45.833 0.00 0.00 37.90 4.70
3225 3325 7.232118 AGGAATCCATTTCTACAAACCAAAG 57.768 36.000 0.61 0.00 34.56 2.77
3226 3326 8.893563 ATAGGAATCCATTTCTACAAACCAAA 57.106 30.769 0.61 0.00 30.99 3.28
3227 3327 8.893563 AATAGGAATCCATTTCTACAAACCAA 57.106 30.769 0.61 0.00 30.99 3.67
3228 3328 7.559897 GGAATAGGAATCCATTTCTACAAACCA 59.440 37.037 0.61 0.00 36.92 3.67
3229 3329 7.780271 AGGAATAGGAATCCATTTCTACAAACC 59.220 37.037 0.61 0.00 39.55 3.27
3230 3330 8.753497 AGGAATAGGAATCCATTTCTACAAAC 57.247 34.615 0.61 0.00 39.55 2.93
3233 3333 9.170890 ACATAGGAATAGGAATCCATTTCTACA 57.829 33.333 0.61 0.00 39.55 2.74
3236 3336 9.398921 AGTACATAGGAATAGGAATCCATTTCT 57.601 33.333 0.61 6.31 39.55 2.52
3237 3337 9.660180 GAGTACATAGGAATAGGAATCCATTTC 57.340 37.037 0.61 3.90 39.55 2.17
3238 3338 8.606830 GGAGTACATAGGAATAGGAATCCATTT 58.393 37.037 0.61 0.00 39.55 2.32
3239 3339 7.182930 GGGAGTACATAGGAATAGGAATCCATT 59.817 40.741 0.61 0.00 39.55 3.16
3240 3340 6.674419 GGGAGTACATAGGAATAGGAATCCAT 59.326 42.308 0.61 0.00 39.55 3.41
3241 3341 6.023603 GGGAGTACATAGGAATAGGAATCCA 58.976 44.000 0.61 0.00 39.55 3.41
3242 3342 6.265304 AGGGAGTACATAGGAATAGGAATCC 58.735 44.000 0.00 0.00 37.22 3.01
3243 3343 6.381707 GGAGGGAGTACATAGGAATAGGAATC 59.618 46.154 0.00 0.00 0.00 2.52
3244 3344 6.265304 GGAGGGAGTACATAGGAATAGGAAT 58.735 44.000 0.00 0.00 0.00 3.01
3245 3345 5.652324 GGAGGGAGTACATAGGAATAGGAA 58.348 45.833 0.00 0.00 0.00 3.36
3246 3346 4.263816 CGGAGGGAGTACATAGGAATAGGA 60.264 50.000 0.00 0.00 0.00 2.94
3247 3347 4.017808 CGGAGGGAGTACATAGGAATAGG 58.982 52.174 0.00 0.00 0.00 2.57
3248 3348 4.664392 ACGGAGGGAGTACATAGGAATAG 58.336 47.826 0.00 0.00 0.00 1.73
3249 3349 4.508047 GGACGGAGGGAGTACATAGGAATA 60.508 50.000 0.00 0.00 0.00 1.75
3250 3350 3.498334 GACGGAGGGAGTACATAGGAAT 58.502 50.000 0.00 0.00 0.00 3.01
3251 3351 2.423947 GGACGGAGGGAGTACATAGGAA 60.424 54.545 0.00 0.00 0.00 3.36
3252 3352 1.144503 GGACGGAGGGAGTACATAGGA 59.855 57.143 0.00 0.00 0.00 2.94
3253 3353 1.618487 GGACGGAGGGAGTACATAGG 58.382 60.000 0.00 0.00 0.00 2.57
3254 3354 1.236628 CGGACGGAGGGAGTACATAG 58.763 60.000 0.00 0.00 0.00 2.23
3255 3355 0.179009 CCGGACGGAGGGAGTACATA 60.179 60.000 4.40 0.00 37.50 2.29
3256 3356 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
3257 3357 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
3258 3358 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3259 3359 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3260 3360 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3261 3361 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3262 3362 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3263 3363 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3264 3364 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3265 3365 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3266 3366 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3267 3367 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3268 3368 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3269 3369 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3270 3370 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3271 3371 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3272 3372 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3317 3417 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
3325 3425 9.132923 TCAATAAAAGGAGATGTATCTAGACGT 57.867 33.333 0.00 0.00 37.25 4.34
3339 3439 9.918630 ACTTGTCATCAAAATCAATAAAAGGAG 57.081 29.630 0.00 0.00 32.87 3.69
3347 3447 7.975616 CCGGAAATACTTGTCATCAAAATCAAT 59.024 33.333 0.00 0.00 32.87 2.57
3348 3448 7.175816 TCCGGAAATACTTGTCATCAAAATCAA 59.824 33.333 0.00 0.00 32.87 2.57
3349 3449 6.657117 TCCGGAAATACTTGTCATCAAAATCA 59.343 34.615 0.00 0.00 32.87 2.57
3350 3450 6.967199 GTCCGGAAATACTTGTCATCAAAATC 59.033 38.462 5.23 0.00 32.87 2.17
3351 3451 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3352 3452 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3353 3453 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3354 3454 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3355 3455 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3356 3456 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3357 3457 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3358 3458 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3359 3459 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3360 3460 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3361 3461 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3362 3462 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3363 3463 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3364 3464 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3365 3465 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3366 3466 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3367 3467 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3368 3468 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3369 3469 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3370 3470 2.354755 ATCCTACTCCCTCCGTCCGG 62.355 65.000 0.00 0.00 0.00 5.14
3371 3471 1.150992 ATCCTACTCCCTCCGTCCG 59.849 63.158 0.00 0.00 0.00 4.79
3372 3472 0.828343 CCATCCTACTCCCTCCGTCC 60.828 65.000 0.00 0.00 0.00 4.79
3373 3473 0.185416 TCCATCCTACTCCCTCCGTC 59.815 60.000 0.00 0.00 0.00 4.79
3374 3474 0.635009 TTCCATCCTACTCCCTCCGT 59.365 55.000 0.00 0.00 0.00 4.69
3375 3475 1.041437 GTTCCATCCTACTCCCTCCG 58.959 60.000 0.00 0.00 0.00 4.63
3376 3476 1.344087 TGGTTCCATCCTACTCCCTCC 60.344 57.143 0.00 0.00 0.00 4.30
3377 3477 2.176247 TGGTTCCATCCTACTCCCTC 57.824 55.000 0.00 0.00 0.00 4.30
3378 3478 2.661176 TTGGTTCCATCCTACTCCCT 57.339 50.000 0.00 0.00 0.00 4.20
3379 3479 2.106684 GGATTGGTTCCATCCTACTCCC 59.893 54.545 10.73 0.00 44.74 4.30
3380 3480 3.493767 GGATTGGTTCCATCCTACTCC 57.506 52.381 10.73 0.00 44.74 3.85
3390 3490 6.398095 CATTAAAAGGTGAAGGATTGGTTCC 58.602 40.000 0.00 0.00 45.85 3.62
3391 3491 6.210584 TCCATTAAAAGGTGAAGGATTGGTTC 59.789 38.462 0.00 0.00 0.00 3.62
3392 3492 6.081356 TCCATTAAAAGGTGAAGGATTGGTT 58.919 36.000 0.00 0.00 0.00 3.67
3393 3493 5.650283 TCCATTAAAAGGTGAAGGATTGGT 58.350 37.500 0.00 0.00 0.00 3.67
3394 3494 6.603940 TTCCATTAAAAGGTGAAGGATTGG 57.396 37.500 0.00 0.00 0.00 3.16
3395 3495 8.538409 CTTTTCCATTAAAAGGTGAAGGATTG 57.462 34.615 2.92 0.00 46.94 2.67
3407 3507 9.747898 TCTAGGCTAATGTCTTTTCCATTAAAA 57.252 29.630 0.00 0.00 35.11 1.52
3408 3508 9.920946 ATCTAGGCTAATGTCTTTTCCATTAAA 57.079 29.630 0.00 0.00 35.11 1.52
3409 3509 9.920946 AATCTAGGCTAATGTCTTTTCCATTAA 57.079 29.630 0.00 0.00 35.11 1.40
3410 3510 9.561069 GAATCTAGGCTAATGTCTTTTCCATTA 57.439 33.333 0.00 0.00 34.51 1.90
3411 3511 8.055181 TGAATCTAGGCTAATGTCTTTTCCATT 58.945 33.333 0.00 0.00 36.53 3.16
3412 3512 7.577303 TGAATCTAGGCTAATGTCTTTTCCAT 58.423 34.615 0.00 0.00 0.00 3.41
3413 3513 6.957631 TGAATCTAGGCTAATGTCTTTTCCA 58.042 36.000 0.00 0.00 0.00 3.53
3414 3514 7.865706 TTGAATCTAGGCTAATGTCTTTTCC 57.134 36.000 0.00 0.00 0.00 3.13
3415 3515 8.348507 CCATTGAATCTAGGCTAATGTCTTTTC 58.651 37.037 0.00 0.00 0.00 2.29
3416 3516 8.055181 TCCATTGAATCTAGGCTAATGTCTTTT 58.945 33.333 0.00 0.00 0.00 2.27
3417 3517 7.577303 TCCATTGAATCTAGGCTAATGTCTTT 58.423 34.615 0.00 0.00 0.00 2.52
3418 3518 7.141758 TCCATTGAATCTAGGCTAATGTCTT 57.858 36.000 0.00 0.00 0.00 3.01
3419 3519 6.753913 TCCATTGAATCTAGGCTAATGTCT 57.246 37.500 0.00 0.00 0.00 3.41
3420 3520 7.807977 TTTCCATTGAATCTAGGCTAATGTC 57.192 36.000 0.00 0.00 0.00 3.06
3421 3521 8.593945 TTTTTCCATTGAATCTAGGCTAATGT 57.406 30.769 0.00 0.00 0.00 2.71
3529 3629 6.632834 CGTACATTTCAACTTGAAGTCTTTGG 59.367 38.462 0.00 0.00 37.70 3.28
3536 3636 7.169308 ACAGACTACGTACATTTCAACTTGAAG 59.831 37.037 4.43 0.00 37.70 3.02
3622 3723 5.693555 TCTCATAGAGCAAATAGTTCATGCG 59.306 40.000 0.00 0.00 44.60 4.73
3735 3837 3.807622 GCGTACCATATTTAGCAAGAGCA 59.192 43.478 0.00 0.00 45.49 4.26
3755 3857 8.567948 AGACTTGTCAATATATAAAATTGGGCG 58.432 33.333 3.49 0.00 35.48 6.13
3776 3878 9.625747 AGAAAAGATCAAAGAGAGAAAAGACTT 57.374 29.630 0.00 0.00 0.00 3.01
3860 3962 7.277981 AGCTATGTGATTGAAACTAACCTAACG 59.722 37.037 0.00 0.00 0.00 3.18
3871 3973 7.998580 TGCATTGATTAGCTATGTGATTGAAA 58.001 30.769 0.00 0.00 33.12 2.69
3905 4007 2.423538 GCACTACTTCGGATGGCAAATT 59.576 45.455 0.00 0.00 0.00 1.82
3910 4012 2.596904 TTAGCACTACTTCGGATGGC 57.403 50.000 0.00 0.00 0.00 4.40
3964 4066 2.122768 CAGCTTCTAGGAGTTGGGGAT 58.877 52.381 6.99 0.00 0.00 3.85
3992 4094 2.637382 TCCACAGAACACCTGCTTATCA 59.363 45.455 0.00 0.00 46.81 2.15
4017 4119 0.447801 CATAGCACCTTCGTTGTGGC 59.552 55.000 0.00 0.00 34.27 5.01
4096 4198 2.868839 GCCAACGGTAACAGTTAGCTGA 60.869 50.000 14.09 0.00 45.28 4.26
4104 4206 0.534203 ACAGGTGCCAACGGTAACAG 60.534 55.000 0.00 0.00 0.00 3.16
4130 4232 7.070074 GCCTATATCAAAATAGCTAGCTCCCTA 59.930 40.741 23.26 3.42 0.00 3.53
4144 4246 3.838244 ACGAGCCAGCCTATATCAAAA 57.162 42.857 0.00 0.00 0.00 2.44
4166 4268 8.312669 TGGTCTGGAAAAAGGAAATTAAAAGA 57.687 30.769 0.00 0.00 0.00 2.52
4183 4285 7.232330 TGAATTAAACATCAACAATGGTCTGGA 59.768 33.333 0.00 0.00 39.90 3.86
4240 4342 7.450074 TGTTCCAAGACATAGAAGAAAAGCTA 58.550 34.615 0.00 0.00 0.00 3.32
4273 4375 7.165485 TGCATACTATGTTAGAACCAAACTGT 58.835 34.615 0.00 0.00 0.00 3.55
4274 4376 7.609760 TGCATACTATGTTAGAACCAAACTG 57.390 36.000 0.00 0.00 0.00 3.16
4276 4378 9.289303 CATTTGCATACTATGTTAGAACCAAAC 57.711 33.333 0.00 0.00 0.00 2.93
4297 4399 6.139048 TGGTGCTGTATCAATCATCATTTG 57.861 37.500 0.00 0.00 0.00 2.32
4304 4406 2.026915 ACTGCTGGTGCTGTATCAATCA 60.027 45.455 0.00 0.00 46.92 2.57
4315 4417 2.046507 CCTCTGGACTGCTGGTGC 60.047 66.667 0.00 0.00 40.20 5.01
4346 4448 1.073284 TGAAAGGGTACTTGGACAGGC 59.927 52.381 0.00 0.00 36.93 4.85
4375 4477 3.056107 CCATCATCATCCATCAATTGCCC 60.056 47.826 0.00 0.00 0.00 5.36
4376 4478 3.576982 ACCATCATCATCCATCAATTGCC 59.423 43.478 0.00 0.00 0.00 4.52
4382 4484 3.200385 TCACACACCATCATCATCCATCA 59.800 43.478 0.00 0.00 0.00 3.07
4487 4591 5.751680 AGTGATCAAACACAACGAATTCAG 58.248 37.500 6.22 1.11 42.45 3.02
4512 4616 8.483758 TGATAACCCTCCAAGTTTATAGAGAAC 58.516 37.037 0.00 0.00 0.00 3.01
4517 4621 5.998363 GGCTGATAACCCTCCAAGTTTATAG 59.002 44.000 0.00 0.00 0.00 1.31
4603 4707 6.171213 AGTAGGGCACAAAAGTTAGTATGAC 58.829 40.000 0.00 0.00 0.00 3.06
4607 4711 8.377034 TCAAATAGTAGGGCACAAAAGTTAGTA 58.623 33.333 0.00 0.00 0.00 1.82
4608 4712 7.228590 TCAAATAGTAGGGCACAAAAGTTAGT 58.771 34.615 0.00 0.00 0.00 2.24
4628 4732 5.472148 TCGCAAAGAAAGAATGCATCAAAT 58.528 33.333 0.00 0.00 40.04 2.32
4654 4758 1.153369 CATGTGAGCCCCACCTACG 60.153 63.158 4.63 0.00 45.09 3.51
4694 4799 7.254455 CGATCCCTGTATCACAAAAGTAATGAC 60.254 40.741 0.00 0.00 0.00 3.06
4714 4819 4.388378 ACAAAACTAGAGTAGCGATCCC 57.612 45.455 0.00 0.00 0.00 3.85
4778 4886 6.127535 ACTCATGCTCACCTGGAATAAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
4781 4889 4.885907 CACTCATGCTCACCTGGAATAAAT 59.114 41.667 0.00 0.00 0.00 1.40
4783 4891 3.519107 TCACTCATGCTCACCTGGAATAA 59.481 43.478 0.00 0.00 0.00 1.40
4792 4900 1.812922 CCGGCTCACTCATGCTCAC 60.813 63.158 0.00 0.00 0.00 3.51
4890 4998 2.193532 TCTGTTAGCAGAGGAGCCG 58.806 57.895 5.01 0.00 45.94 5.52
4921 5029 1.511318 CGAACCAAATGACACCCGCA 61.511 55.000 0.00 0.00 0.00 5.69
4922 5030 1.209127 CGAACCAAATGACACCCGC 59.791 57.895 0.00 0.00 0.00 6.13
4923 5031 0.887387 ACCGAACCAAATGACACCCG 60.887 55.000 0.00 0.00 0.00 5.28
4952 5060 1.196012 GTTGTCTTCCCGAGGAGGAT 58.804 55.000 7.77 0.00 39.91 3.24
4958 5066 0.393077 AGTGGTGTTGTCTTCCCGAG 59.607 55.000 0.00 0.00 0.00 4.63
4961 5069 1.270893 GGAGAGTGGTGTTGTCTTCCC 60.271 57.143 0.00 0.00 0.00 3.97
4970 5078 0.977395 GCTAACAGGGAGAGTGGTGT 59.023 55.000 0.00 0.00 0.00 4.16
4972 5080 0.542232 ACGCTAACAGGGAGAGTGGT 60.542 55.000 0.00 0.00 31.91 4.16
4975 5083 1.926108 AGAACGCTAACAGGGAGAGT 58.074 50.000 0.00 0.00 31.91 3.24
5008 5116 1.685820 GAAGGGCTACTGGTTGGCT 59.314 57.895 8.31 0.00 0.00 4.75
5042 5150 1.163554 GCCAGAAGCTGAGGAAGTTG 58.836 55.000 3.70 0.00 38.99 3.16
5053 5161 2.351455 GTTGAGAGGTAAGCCAGAAGC 58.649 52.381 0.00 0.00 44.25 3.86
5055 5163 1.275291 CGGTTGAGAGGTAAGCCAGAA 59.725 52.381 0.00 0.00 37.19 3.02
5056 5164 0.895530 CGGTTGAGAGGTAAGCCAGA 59.104 55.000 0.00 0.00 37.19 3.86
5058 5166 1.295423 GCGGTTGAGAGGTAAGCCA 59.705 57.895 0.00 0.00 37.19 4.75
5059 5167 1.810030 CGCGGTTGAGAGGTAAGCC 60.810 63.158 0.00 0.00 0.00 4.35
5060 5168 0.179108 ATCGCGGTTGAGAGGTAAGC 60.179 55.000 6.13 0.00 0.00 3.09
5061 5169 1.560923 CATCGCGGTTGAGAGGTAAG 58.439 55.000 6.13 0.00 0.00 2.34
5062 5170 0.459585 GCATCGCGGTTGAGAGGTAA 60.460 55.000 6.13 0.00 0.00 2.85
5063 5171 1.141019 GCATCGCGGTTGAGAGGTA 59.859 57.895 6.13 0.00 0.00 3.08
5064 5172 2.125512 GCATCGCGGTTGAGAGGT 60.126 61.111 6.13 0.00 0.00 3.85
5065 5173 2.169789 CAGCATCGCGGTTGAGAGG 61.170 63.158 6.13 0.00 0.00 3.69
5066 5174 2.806856 GCAGCATCGCGGTTGAGAG 61.807 63.158 6.13 0.00 0.00 3.20
5067 5175 2.815211 GCAGCATCGCGGTTGAGA 60.815 61.111 6.13 0.00 0.00 3.27
5068 5176 3.869272 GGCAGCATCGCGGTTGAG 61.869 66.667 6.13 2.62 0.00 3.02
5069 5177 4.695993 TGGCAGCATCGCGGTTGA 62.696 61.111 6.13 0.00 0.00 3.18
5070 5178 4.465512 GTGGCAGCATCGCGGTTG 62.466 66.667 6.13 5.88 0.00 3.77
5101 5209 2.606213 TGGTGGAGCGATGGTGGA 60.606 61.111 0.00 0.00 0.00 4.02
5123 5231 1.718361 CGAGCAACAACAACGTCATCG 60.718 52.381 0.00 0.00 43.34 3.84
5170 5278 1.666011 GACGAAGGAGAGGTGTGCA 59.334 57.895 0.00 0.00 0.00 4.57
5202 5311 0.950836 CACGGTGATGGAAGCAAACA 59.049 50.000 0.74 0.00 28.10 2.83
5203 5312 0.951558 ACACGGTGATGGAAGCAAAC 59.048 50.000 16.29 0.00 28.10 2.93
5235 5344 5.923486 CGAAATGCACGCAATAAATACAA 57.077 34.783 0.00 0.00 0.00 2.41
5263 5372 7.499438 TGTTGTGAAAACACTAATGAAAACG 57.501 32.000 0.00 0.00 0.00 3.60
5281 5390 3.713826 AACCCCTACCACTATGTTGTG 57.286 47.619 0.00 0.00 37.66 3.33
5282 5391 4.659115 GAAAACCCCTACCACTATGTTGT 58.341 43.478 0.00 0.00 0.00 3.32
5285 5394 2.908351 ACGAAAACCCCTACCACTATGT 59.092 45.455 0.00 0.00 0.00 2.29
5287 5396 5.214293 AGATACGAAAACCCCTACCACTAT 58.786 41.667 0.00 0.00 0.00 2.12
5316 5425 3.938334 GTGACAAAAGGGCAAAACAACAT 59.062 39.130 0.00 0.00 0.00 2.71
5319 5428 3.685139 TGTGACAAAAGGGCAAAACAA 57.315 38.095 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.