Multiple sequence alignment - TraesCS5B01G298200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G298200 chr5B 100.000 8003 0 0 1 8003 480751612 480759614 0.000000e+00 14779.0
1 TraesCS5B01G298200 chr5B 96.688 2234 70 3 5772 8003 480805205 480807436 0.000000e+00 3712.0
2 TraesCS5B01G298200 chr5B 96.023 1760 47 6 6265 8003 480793074 480794831 0.000000e+00 2841.0
3 TraesCS5B01G298200 chr5B 86.827 1617 180 18 2498 4097 711408257 711409857 0.000000e+00 1775.0
4 TraesCS5B01G298200 chr5B 97.586 497 12 0 5772 6268 480770793 480771289 0.000000e+00 852.0
5 TraesCS5B01G298200 chr5B 80.952 315 43 13 267 577 559699362 559699663 4.830000e-57 233.0
6 TraesCS5B01G298200 chr5B 95.161 62 3 0 5294 5355 480756841 480756902 1.840000e-16 99.0
7 TraesCS5B01G298200 chr5B 95.161 62 3 0 5230 5291 480756905 480756966 1.840000e-16 99.0
8 TraesCS5B01G298200 chr5B 93.478 46 3 0 4593 4638 692817819 692817864 1.440000e-07 69.4
9 TraesCS5B01G298200 chr5D 96.263 4977 111 18 2482 7428 400898225 400903156 0.000000e+00 8091.0
10 TraesCS5B01G298200 chr5D 94.619 2732 96 20 4778 7494 401003730 401006425 0.000000e+00 4183.0
11 TraesCS5B01G298200 chr5D 96.648 2357 63 4 5082 7428 401315758 401318108 0.000000e+00 3901.0
12 TraesCS5B01G298200 chr5D 93.114 1917 54 24 624 2490 400895522 400897410 0.000000e+00 2737.0
13 TraesCS5B01G298200 chr5D 87.500 1616 177 11 2498 4097 550600691 550602297 0.000000e+00 1842.0
14 TraesCS5B01G298200 chr5D 95.400 587 18 4 7426 8003 401318269 401318855 0.000000e+00 926.0
15 TraesCS5B01G298200 chr5D 94.746 590 19 5 7426 8003 400903317 400903906 0.000000e+00 907.0
16 TraesCS5B01G298200 chr5D 89.347 582 10 9 4039 4611 401001604 401002142 0.000000e+00 684.0
17 TraesCS5B01G298200 chr5D 94.000 450 19 5 7558 8003 401006442 401006887 0.000000e+00 675.0
18 TraesCS5B01G298200 chr5D 86.806 288 15 8 4651 4915 401002921 401003208 4.690000e-77 300.0
19 TraesCS5B01G298200 chr5D 98.387 62 1 0 5230 5291 400901031 400901092 8.490000e-20 110.0
20 TraesCS5B01G298200 chr5D 95.161 62 3 0 5294 5355 400900967 400901028 1.840000e-16 99.0
21 TraesCS5B01G298200 chr5D 93.651 63 3 1 5294 5355 401004156 401004218 8.550000e-15 93.5
22 TraesCS5B01G298200 chr5D 93.548 62 4 0 5230 5291 401315970 401316031 8.550000e-15 93.5
23 TraesCS5B01G298200 chr5D 91.935 62 2 2 5230 5291 401004221 401004279 5.150000e-12 84.2
24 TraesCS5B01G298200 chr5A 95.806 2742 79 15 5294 8003 506140472 506143209 0.000000e+00 4394.0
25 TraesCS5B01G298200 chr5A 93.973 1908 66 20 624 2490 506130014 506131913 0.000000e+00 2841.0
26 TraesCS5B01G298200 chr5A 95.658 1451 38 7 2783 4221 506138078 506139515 0.000000e+00 2307.0
27 TraesCS5B01G298200 chr5A 95.426 1115 35 7 4228 5340 506139482 506140582 0.000000e+00 1762.0
28 TraesCS5B01G298200 chr5A 78.520 1541 281 30 2482 3999 402919065 402917552 0.000000e+00 966.0
29 TraesCS5B01G298200 chr5A 98.770 244 3 0 2505 2748 506137833 506138076 1.230000e-117 435.0
30 TraesCS5B01G298200 chr5A 96.000 75 3 0 1832 1906 445702724 445702650 1.090000e-23 122.0
31 TraesCS5B01G298200 chr5A 96.000 75 3 0 1832 1906 562386492 562386566 1.090000e-23 122.0
32 TraesCS5B01G298200 chrUn 96.732 2234 69 3 5772 8003 301894888 301897119 0.000000e+00 3718.0
33 TraesCS5B01G298200 chrUn 97.152 1299 35 2 6265 7562 378853835 378855132 0.000000e+00 2193.0
34 TraesCS5B01G298200 chrUn 96.615 384 12 1 7621 8003 356980734 356980351 3.150000e-178 636.0
35 TraesCS5B01G298200 chrUn 94.737 38 2 0 1680 1717 62377536 62377573 8.670000e-05 60.2
36 TraesCS5B01G298200 chrUn 94.737 38 2 0 1680 1717 62444189 62444226 8.670000e-05 60.2
37 TraesCS5B01G298200 chrUn 94.737 38 2 0 1680 1717 62513245 62513282 8.670000e-05 60.2
38 TraesCS5B01G298200 chrUn 94.737 38 2 0 1680 1717 62572785 62572822 8.670000e-05 60.2
39 TraesCS5B01G298200 chr6D 87.368 1615 180 10 2498 4097 472122986 472124591 0.000000e+00 1831.0
40 TraesCS5B01G298200 chr6D 87.183 1615 183 10 2498 4097 17159827 17158222 0.000000e+00 1814.0
41 TraesCS5B01G298200 chr6D 93.525 139 9 0 5401 5539 73251950 73251812 2.930000e-49 207.0
42 TraesCS5B01G298200 chr6D 85.714 84 9 2 1915 1997 66615322 66615403 1.430000e-12 86.1
43 TraesCS5B01G298200 chr6D 85.714 84 9 2 1915 1997 66963353 66963434 1.430000e-12 86.1
44 TraesCS5B01G298200 chr4B 87.137 1617 180 14 2498 4097 8932770 8931165 0.000000e+00 1808.0
45 TraesCS5B01G298200 chr6B 86.959 1618 178 18 2498 4097 674954373 674955975 0.000000e+00 1788.0
46 TraesCS5B01G298200 chr6B 85.868 1118 135 13 2996 4097 715065776 715066886 0.000000e+00 1168.0
47 TraesCS5B01G298200 chr6B 76.168 428 68 19 13 423 718978304 718977894 2.280000e-45 195.0
48 TraesCS5B01G298200 chr6B 84.524 84 10 2 1915 1997 141192106 141192187 6.660000e-11 80.5
49 TraesCS5B01G298200 chr6B 84.524 84 10 2 1915 1997 141194526 141194607 6.660000e-11 80.5
50 TraesCS5B01G298200 chr7D 85.714 1120 143 7 2992 4097 20631964 20633080 0.000000e+00 1166.0
51 TraesCS5B01G298200 chr7D 93.525 139 9 0 5401 5539 594653369 594653507 2.930000e-49 207.0
52 TraesCS5B01G298200 chr7D 94.667 75 4 0 1832 1906 428711399 428711473 5.070000e-22 117.0
53 TraesCS5B01G298200 chr7D 85.106 94 11 3 1914 2005 183027528 183027436 8.550000e-15 93.5
54 TraesCS5B01G298200 chr7D 82.114 123 7 6 1999 2118 632176210 632176320 3.080000e-14 91.6
55 TraesCS5B01G298200 chr7A 78.412 1524 281 31 2482 3984 39331820 39333316 0.000000e+00 948.0
56 TraesCS5B01G298200 chr2A 78.412 1524 278 30 2482 3982 37163379 37161884 0.000000e+00 944.0
57 TraesCS5B01G298200 chr2A 85.567 97 10 4 1904 1997 602696284 602696189 1.840000e-16 99.0
58 TraesCS5B01G298200 chr6A 78.052 1540 288 33 2482 3999 563139095 563137584 0.000000e+00 926.0
59 TraesCS5B01G298200 chr6A 79.076 368 56 10 265 625 4178441 4178088 4.830000e-57 233.0
60 TraesCS5B01G298200 chr6A 94.737 38 2 0 1680 1717 4254789 4254752 8.670000e-05 60.2
61 TraesCS5B01G298200 chr6A 94.737 38 2 0 1680 1717 4375195 4375158 8.670000e-05 60.2
62 TraesCS5B01G298200 chr6A 94.737 38 2 0 1680 1717 4433483 4433446 8.670000e-05 60.2
63 TraesCS5B01G298200 chr3B 93.525 139 9 0 5401 5539 350051748 350051886 2.930000e-49 207.0
64 TraesCS5B01G298200 chr2D 93.478 138 9 0 5402 5539 147703994 147704131 1.050000e-48 206.0
65 TraesCS5B01G298200 chr4D 92.806 139 10 0 5401 5539 332132165 332132303 1.360000e-47 202.0
66 TraesCS5B01G298200 chr1A 76.923 247 36 15 22 268 13411367 13411142 3.920000e-23 121.0
67 TraesCS5B01G298200 chr1A 84.706 85 11 2 1 83 13411480 13411396 5.150000e-12 84.2
68 TraesCS5B01G298200 chr1A 81.132 106 15 5 1905 2008 3115896 3115998 6.660000e-11 80.5
69 TraesCS5B01G298200 chr1A 93.478 46 3 0 4593 4638 361351032 361351077 1.440000e-07 69.4
70 TraesCS5B01G298200 chr1B 92.683 82 4 2 1824 1905 395260714 395260793 5.070000e-22 117.0
71 TraesCS5B01G298200 chr2B 91.463 82 7 0 1824 1905 245996252 245996333 6.560000e-21 113.0
72 TraesCS5B01G298200 chr2B 93.151 73 5 0 1926 1998 37796468 37796396 3.050000e-19 108.0
73 TraesCS5B01G298200 chr3D 92.208 77 6 0 1830 1906 346198640 346198564 8.490000e-20 110.0
74 TraesCS5B01G298200 chr3D 90.244 82 8 0 1824 1905 394193456 394193537 3.050000e-19 108.0
75 TraesCS5B01G298200 chr3D 89.157 83 8 1 1926 2007 31992597 31992679 1.420000e-17 102.0
76 TraesCS5B01G298200 chr3A 93.478 46 3 0 4593 4638 650111805 650111760 1.440000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G298200 chr5B 480751612 480759614 8002 False 4992.333333 14779 96.774000 1 8003 3 chr5B.!!$F7 8002
1 TraesCS5B01G298200 chr5B 480805205 480807436 2231 False 3712.000000 3712 96.688000 5772 8003 1 chr5B.!!$F3 2231
2 TraesCS5B01G298200 chr5B 480793074 480794831 1757 False 2841.000000 2841 96.023000 6265 8003 1 chr5B.!!$F2 1738
3 TraesCS5B01G298200 chr5B 711408257 711409857 1600 False 1775.000000 1775 86.827000 2498 4097 1 chr5B.!!$F6 1599
4 TraesCS5B01G298200 chr5D 400895522 400903906 8384 False 2388.800000 8091 95.534200 624 8003 5 chr5D.!!$F2 7379
5 TraesCS5B01G298200 chr5D 550600691 550602297 1606 False 1842.000000 1842 87.500000 2498 4097 1 chr5D.!!$F1 1599
6 TraesCS5B01G298200 chr5D 401315758 401318855 3097 False 1640.166667 3901 95.198667 5082 8003 3 chr5D.!!$F4 2921
7 TraesCS5B01G298200 chr5D 401001604 401006887 5283 False 1003.283333 4183 91.726333 4039 8003 6 chr5D.!!$F3 3964
8 TraesCS5B01G298200 chr5A 506130014 506131913 1899 False 2841.000000 2841 93.973000 624 2490 1 chr5A.!!$F1 1866
9 TraesCS5B01G298200 chr5A 506137833 506143209 5376 False 2224.500000 4394 96.415000 2505 8003 4 chr5A.!!$F3 5498
10 TraesCS5B01G298200 chr5A 402917552 402919065 1513 True 966.000000 966 78.520000 2482 3999 1 chr5A.!!$R1 1517
11 TraesCS5B01G298200 chrUn 301894888 301897119 2231 False 3718.000000 3718 96.732000 5772 8003 1 chrUn.!!$F5 2231
12 TraesCS5B01G298200 chrUn 378853835 378855132 1297 False 2193.000000 2193 97.152000 6265 7562 1 chrUn.!!$F6 1297
13 TraesCS5B01G298200 chr6D 472122986 472124591 1605 False 1831.000000 1831 87.368000 2498 4097 1 chr6D.!!$F3 1599
14 TraesCS5B01G298200 chr6D 17158222 17159827 1605 True 1814.000000 1814 87.183000 2498 4097 1 chr6D.!!$R1 1599
15 TraesCS5B01G298200 chr4B 8931165 8932770 1605 True 1808.000000 1808 87.137000 2498 4097 1 chr4B.!!$R1 1599
16 TraesCS5B01G298200 chr6B 674954373 674955975 1602 False 1788.000000 1788 86.959000 2498 4097 1 chr6B.!!$F1 1599
17 TraesCS5B01G298200 chr6B 715065776 715066886 1110 False 1168.000000 1168 85.868000 2996 4097 1 chr6B.!!$F2 1101
18 TraesCS5B01G298200 chr7D 20631964 20633080 1116 False 1166.000000 1166 85.714000 2992 4097 1 chr7D.!!$F1 1105
19 TraesCS5B01G298200 chr7A 39331820 39333316 1496 False 948.000000 948 78.412000 2482 3984 1 chr7A.!!$F1 1502
20 TraesCS5B01G298200 chr2A 37161884 37163379 1495 True 944.000000 944 78.412000 2482 3982 1 chr2A.!!$R1 1500
21 TraesCS5B01G298200 chr6A 563137584 563139095 1511 True 926.000000 926 78.052000 2482 3999 1 chr6A.!!$R5 1517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 463 0.031994 GCCCTTGTGTGCACGATTTT 59.968 50.000 13.13 0.00 0.00 1.82 F
555 556 0.040425 GCCGACACAAATGTTCGCTT 60.040 50.000 10.53 0.00 39.95 4.68 F
574 575 0.109532 TGGTCGATCCAAACAGGCAA 59.890 50.000 4.51 0.00 44.12 4.52 F
609 610 0.319211 TGTGTCCGTTTAGGTCGCTG 60.319 55.000 0.00 0.00 41.99 5.18 F
617 618 0.669318 TTTAGGTCGCTGCGTTGGAG 60.669 55.000 22.48 0.00 0.00 3.86 F
1828 1869 0.974010 TAGGACCCTGGTAAGTGCCG 60.974 60.000 0.00 0.00 0.00 5.69 F
2936 3813 0.824109 TAGTAATGCCTGAGCGCACT 59.176 50.000 11.47 2.94 42.70 4.40 F
3158 4044 0.902531 ACACTACTAGCATTGCCGGT 59.097 50.000 1.90 7.14 0.00 5.28 F
4068 4960 2.100197 TCATCCGAGTCTACACCTTGG 58.900 52.381 0.00 0.00 35.14 3.61 F
4258 5158 3.764434 ACCACTCCATGACAGTAGTACAG 59.236 47.826 2.52 0.00 0.00 2.74 F
4877 7203 3.768922 GAGCTGCTCAGGACGCCT 61.769 66.667 24.02 0.00 0.00 5.52 F
5184 7517 1.937924 GCCCCTTTCCTGGCCACTAT 61.938 60.000 0.00 0.00 41.97 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1849 0.540454 GGCACTTACCAGGGTCCTAC 59.460 60.000 0.00 0.00 0.00 3.18 R
1828 1869 1.446618 CAGGGCGGAATTGCTTTGC 60.447 57.895 0.00 0.00 34.52 3.68 R
1950 1991 1.878948 GCACAAAGTAACACCGCCCTA 60.879 52.381 0.00 0.00 0.00 3.53 R
2119 2171 2.843730 TCTTATGCCTTCCTGGTTGCTA 59.156 45.455 0.00 0.00 38.35 3.49 R
2139 2191 5.166398 AGCTGTTCTTTGCTTTGCATTATC 58.834 37.500 0.00 0.00 38.76 1.75 R
3146 4032 0.323302 TCAAGTGACCGGCAATGCTA 59.677 50.000 4.82 0.00 0.00 3.49 R
3894 4786 0.616395 TCACAGGATGCCCGAAGGTA 60.616 55.000 0.00 0.00 45.09 3.08 R
5053 7386 0.389817 CGTCCCACTTCATCGCTTCA 60.390 55.000 0.00 0.00 0.00 3.02 R
5059 7392 1.599542 GCATTAGCGTCCCACTTCATC 59.400 52.381 0.00 0.00 0.00 2.92 R
5060 7393 1.668419 GCATTAGCGTCCCACTTCAT 58.332 50.000 0.00 0.00 0.00 2.57 R
6756 9108 1.034292 GGACCTTGAGGCAAGCATCC 61.034 60.000 4.13 10.83 39.85 3.51 R
7249 9602 3.725754 CCACCAGTGGCTGTTACTT 57.274 52.632 9.78 0.00 44.73 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.778143 GCCCATCTGGTTCGGCGT 62.778 66.667 6.85 0.00 36.04 5.68
37 38 2.819595 CCCATCTGGTTCGGCGTG 60.820 66.667 6.85 0.00 0.00 5.34
38 39 2.264480 CCATCTGGTTCGGCGTGA 59.736 61.111 6.85 0.00 0.00 4.35
39 40 2.100631 CCATCTGGTTCGGCGTGAC 61.101 63.158 6.85 7.22 0.00 3.67
40 41 2.126071 ATCTGGTTCGGCGTGACG 60.126 61.111 6.85 0.00 0.00 4.35
63 64 3.787001 GCAGGAAGCCGCCTACCT 61.787 66.667 0.00 0.00 36.22 3.08
64 65 2.501610 CAGGAAGCCGCCTACCTC 59.498 66.667 0.00 0.00 36.22 3.85
65 66 2.764547 AGGAAGCCGCCTACCTCC 60.765 66.667 0.00 0.00 36.22 4.30
66 67 3.081409 GGAAGCCGCCTACCTCCA 61.081 66.667 0.00 0.00 0.00 3.86
67 68 2.666098 GGAAGCCGCCTACCTCCAA 61.666 63.158 0.00 0.00 0.00 3.53
68 69 1.449778 GAAGCCGCCTACCTCCAAC 60.450 63.158 0.00 0.00 0.00 3.77
69 70 2.180159 GAAGCCGCCTACCTCCAACA 62.180 60.000 0.00 0.00 0.00 3.33
70 71 1.774894 AAGCCGCCTACCTCCAACAA 61.775 55.000 0.00 0.00 0.00 2.83
71 72 1.077716 GCCGCCTACCTCCAACAAT 60.078 57.895 0.00 0.00 0.00 2.71
72 73 1.376609 GCCGCCTACCTCCAACAATG 61.377 60.000 0.00 0.00 0.00 2.82
82 83 3.177600 CAACAATGGAGGACGCCG 58.822 61.111 0.00 0.00 0.00 6.46
83 84 2.046314 AACAATGGAGGACGCCGG 60.046 61.111 0.00 0.00 0.00 6.13
84 85 4.778143 ACAATGGAGGACGCCGGC 62.778 66.667 19.07 19.07 0.00 6.13
85 86 4.473520 CAATGGAGGACGCCGGCT 62.474 66.667 26.68 11.91 0.00 5.52
86 87 2.762459 AATGGAGGACGCCGGCTA 60.762 61.111 26.68 1.86 0.00 3.93
87 88 2.797278 AATGGAGGACGCCGGCTAG 61.797 63.158 26.68 12.89 0.00 3.42
88 89 4.753662 TGGAGGACGCCGGCTAGT 62.754 66.667 26.68 16.64 0.00 2.57
89 90 4.208686 GGAGGACGCCGGCTAGTG 62.209 72.222 26.68 11.62 0.00 2.74
90 91 3.450115 GAGGACGCCGGCTAGTGT 61.450 66.667 26.68 15.36 0.00 3.55
91 92 2.044650 AGGACGCCGGCTAGTGTA 60.045 61.111 26.68 0.00 0.00 2.90
92 93 1.660560 GAGGACGCCGGCTAGTGTAA 61.661 60.000 26.68 0.00 0.00 2.41
93 94 1.226888 GGACGCCGGCTAGTGTAAG 60.227 63.158 26.68 8.67 0.00 2.34
94 95 1.660560 GGACGCCGGCTAGTGTAAGA 61.661 60.000 26.68 0.00 0.00 2.10
95 96 0.248539 GACGCCGGCTAGTGTAAGAG 60.249 60.000 26.68 7.01 0.00 2.85
96 97 1.589196 CGCCGGCTAGTGTAAGAGC 60.589 63.158 26.68 0.00 38.00 4.09
97 98 1.589196 GCCGGCTAGTGTAAGAGCG 60.589 63.158 22.15 0.00 39.72 5.03
98 99 1.589196 CCGGCTAGTGTAAGAGCGC 60.589 63.158 0.00 0.00 39.72 5.92
99 100 1.939785 CGGCTAGTGTAAGAGCGCG 60.940 63.158 0.00 0.00 39.72 6.86
100 101 2.231618 GGCTAGTGTAAGAGCGCGC 61.232 63.158 26.66 26.66 39.72 6.86
101 102 2.231618 GCTAGTGTAAGAGCGCGCC 61.232 63.158 30.33 19.60 0.00 6.53
102 103 1.939785 CTAGTGTAAGAGCGCGCCG 60.940 63.158 30.33 0.00 0.00 6.46
103 104 2.319011 CTAGTGTAAGAGCGCGCCGA 62.319 60.000 30.33 7.72 0.00 5.54
104 105 2.588146 TAGTGTAAGAGCGCGCCGAC 62.588 60.000 30.33 20.32 0.00 4.79
105 106 3.744719 TGTAAGAGCGCGCCGACT 61.745 61.111 30.33 21.61 0.00 4.18
106 107 3.248171 GTAAGAGCGCGCCGACTG 61.248 66.667 30.33 0.00 0.00 3.51
117 118 4.193334 CCGACTGCGAGCGATGGA 62.193 66.667 0.00 0.00 40.82 3.41
118 119 2.026734 CGACTGCGAGCGATGGAT 59.973 61.111 0.00 0.00 40.82 3.41
119 120 2.298629 CGACTGCGAGCGATGGATG 61.299 63.158 0.00 0.00 40.82 3.51
120 121 1.953138 GACTGCGAGCGATGGATGG 60.953 63.158 0.00 0.00 0.00 3.51
121 122 2.355445 GACTGCGAGCGATGGATGGA 62.355 60.000 0.00 0.00 0.00 3.41
122 123 1.664017 CTGCGAGCGATGGATGGAG 60.664 63.158 0.00 0.00 0.00 3.86
123 124 3.040763 GCGAGCGATGGATGGAGC 61.041 66.667 0.00 0.00 0.00 4.70
124 125 2.733301 CGAGCGATGGATGGAGCT 59.267 61.111 0.00 0.00 43.33 4.09
125 126 1.664017 CGAGCGATGGATGGAGCTG 60.664 63.158 0.00 0.00 40.39 4.24
126 127 1.301558 GAGCGATGGATGGAGCTGG 60.302 63.158 0.00 0.00 40.39 4.85
127 128 1.752358 GAGCGATGGATGGAGCTGGA 61.752 60.000 0.00 0.00 40.39 3.86
128 129 1.301558 GCGATGGATGGAGCTGGAG 60.302 63.158 0.00 0.00 0.00 3.86
129 130 1.301558 CGATGGATGGAGCTGGAGC 60.302 63.158 0.00 0.00 42.49 4.70
152 153 2.818714 CTGGCGCAGGAAGCAGAG 60.819 66.667 10.83 0.00 46.13 3.35
153 154 4.399395 TGGCGCAGGAAGCAGAGG 62.399 66.667 10.83 0.00 46.13 3.69
154 155 4.087892 GGCGCAGGAAGCAGAGGA 62.088 66.667 10.83 0.00 46.13 3.71
155 156 2.511145 GCGCAGGAAGCAGAGGAG 60.511 66.667 0.30 0.00 46.13 3.69
156 157 2.186384 CGCAGGAAGCAGAGGAGG 59.814 66.667 0.00 0.00 46.13 4.30
157 158 2.354401 CGCAGGAAGCAGAGGAGGA 61.354 63.158 0.00 0.00 46.13 3.71
158 159 1.521616 GCAGGAAGCAGAGGAGGAG 59.478 63.158 0.00 0.00 44.79 3.69
159 160 1.521616 CAGGAAGCAGAGGAGGAGC 59.478 63.158 0.00 0.00 0.00 4.70
160 161 2.057408 AGGAAGCAGAGGAGGAGCG 61.057 63.158 0.00 0.00 0.00 5.03
161 162 2.202864 GAAGCAGAGGAGGAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
162 163 3.731653 GAAGCAGAGGAGGAGCGCC 62.732 68.421 2.29 0.00 0.00 6.53
171 172 3.721706 AGGAGCGCCTGGAAAGGG 61.722 66.667 8.76 0.00 44.90 3.95
172 173 3.717294 GGAGCGCCTGGAAAGGGA 61.717 66.667 2.29 0.00 0.00 4.20
173 174 2.124942 GAGCGCCTGGAAAGGGAG 60.125 66.667 2.29 0.00 0.00 4.30
174 175 3.689002 GAGCGCCTGGAAAGGGAGG 62.689 68.421 2.29 0.00 0.00 4.30
175 176 3.717294 GCGCCTGGAAAGGGAGGA 61.717 66.667 0.00 0.00 0.00 3.71
176 177 2.586792 CGCCTGGAAAGGGAGGAG 59.413 66.667 0.00 0.00 0.00 3.69
177 178 3.002371 GCCTGGAAAGGGAGGAGG 58.998 66.667 0.00 0.00 0.00 4.30
178 179 1.616628 GCCTGGAAAGGGAGGAGGA 60.617 63.158 0.00 0.00 0.00 3.71
179 180 1.631071 GCCTGGAAAGGGAGGAGGAG 61.631 65.000 0.00 0.00 0.00 3.69
180 181 0.985490 CCTGGAAAGGGAGGAGGAGG 60.985 65.000 0.00 0.00 0.00 4.30
181 182 0.043334 CTGGAAAGGGAGGAGGAGGA 59.957 60.000 0.00 0.00 0.00 3.71
182 183 0.043334 TGGAAAGGGAGGAGGAGGAG 59.957 60.000 0.00 0.00 0.00 3.69
183 184 1.341913 GGAAAGGGAGGAGGAGGAGC 61.342 65.000 0.00 0.00 0.00 4.70
184 185 1.681486 GAAAGGGAGGAGGAGGAGCG 61.681 65.000 0.00 0.00 0.00 5.03
185 186 2.463497 AAAGGGAGGAGGAGGAGCGT 62.463 60.000 0.00 0.00 0.00 5.07
186 187 3.151022 GGGAGGAGGAGGAGCGTG 61.151 72.222 0.00 0.00 0.00 5.34
187 188 3.844090 GGAGGAGGAGGAGCGTGC 61.844 72.222 0.00 0.00 0.00 5.34
188 189 3.844090 GAGGAGGAGGAGCGTGCC 61.844 72.222 0.00 0.00 0.00 5.01
214 215 3.053896 GGTAGTGCAACCGCCACC 61.054 66.667 0.00 0.00 37.80 4.61
215 216 2.281208 GTAGTGCAACCGCCACCA 60.281 61.111 0.00 0.00 37.80 4.17
216 217 2.281208 TAGTGCAACCGCCACCAC 60.281 61.111 0.00 0.00 37.80 4.16
217 218 2.813726 TAGTGCAACCGCCACCACT 61.814 57.895 0.00 0.00 41.12 4.00
218 219 1.473497 TAGTGCAACCGCCACCACTA 61.473 55.000 0.00 0.00 39.15 2.74
219 220 2.031919 TGCAACCGCCACCACTAG 59.968 61.111 0.00 0.00 37.32 2.57
220 221 2.746277 GCAACCGCCACCACTAGG 60.746 66.667 0.00 0.00 42.21 3.02
221 222 3.065306 CAACCGCCACCACTAGGA 58.935 61.111 0.00 0.00 38.69 2.94
222 223 1.375523 CAACCGCCACCACTAGGAC 60.376 63.158 0.00 0.00 38.69 3.85
223 224 1.839747 AACCGCCACCACTAGGACA 60.840 57.895 0.00 0.00 38.69 4.02
224 225 1.827399 AACCGCCACCACTAGGACAG 61.827 60.000 0.00 0.00 38.69 3.51
225 226 2.125512 CGCCACCACTAGGACAGC 60.126 66.667 0.00 0.00 38.69 4.40
226 227 2.269241 GCCACCACTAGGACAGCC 59.731 66.667 0.00 0.00 38.69 4.85
227 228 2.592993 GCCACCACTAGGACAGCCA 61.593 63.158 0.00 0.00 38.69 4.75
228 229 1.599047 CCACCACTAGGACAGCCAG 59.401 63.158 0.00 0.00 38.69 4.85
229 230 1.078848 CACCACTAGGACAGCCAGC 60.079 63.158 0.00 0.00 38.69 4.85
230 231 1.536418 ACCACTAGGACAGCCAGCA 60.536 57.895 0.00 0.00 38.69 4.41
231 232 1.078848 CCACTAGGACAGCCAGCAC 60.079 63.158 0.00 0.00 36.89 4.40
232 233 1.078848 CACTAGGACAGCCAGCACC 60.079 63.158 0.00 0.00 36.29 5.01
233 234 2.185350 CTAGGACAGCCAGCACCG 59.815 66.667 0.00 0.00 36.29 4.94
234 235 3.376935 CTAGGACAGCCAGCACCGG 62.377 68.421 0.00 0.00 36.29 5.28
246 247 4.308458 CACCGGCGGGACAGACAA 62.308 66.667 31.78 0.00 36.97 3.18
247 248 4.309950 ACCGGCGGGACAGACAAC 62.310 66.667 31.78 0.00 36.97 3.32
248 249 4.308458 CCGGCGGGACAGACAACA 62.308 66.667 20.56 0.00 34.06 3.33
249 250 2.738521 CGGCGGGACAGACAACAG 60.739 66.667 0.00 0.00 0.00 3.16
250 251 2.741092 GGCGGGACAGACAACAGA 59.259 61.111 0.00 0.00 0.00 3.41
251 252 1.374758 GGCGGGACAGACAACAGAG 60.375 63.158 0.00 0.00 0.00 3.35
252 253 1.374758 GCGGGACAGACAACAGAGG 60.375 63.158 0.00 0.00 0.00 3.69
253 254 1.816863 GCGGGACAGACAACAGAGGA 61.817 60.000 0.00 0.00 0.00 3.71
254 255 0.244994 CGGGACAGACAACAGAGGAG 59.755 60.000 0.00 0.00 0.00 3.69
255 256 0.610687 GGGACAGACAACAGAGGAGG 59.389 60.000 0.00 0.00 0.00 4.30
256 257 0.036858 GGACAGACAACAGAGGAGGC 60.037 60.000 0.00 0.00 0.00 4.70
257 258 0.681733 GACAGACAACAGAGGAGGCA 59.318 55.000 0.00 0.00 0.00 4.75
258 259 1.070758 GACAGACAACAGAGGAGGCAA 59.929 52.381 0.00 0.00 0.00 4.52
259 260 1.202698 ACAGACAACAGAGGAGGCAAC 60.203 52.381 0.00 0.00 0.00 4.17
260 261 0.034059 AGACAACAGAGGAGGCAACG 59.966 55.000 0.00 0.00 46.39 4.10
261 262 1.569479 GACAACAGAGGAGGCAACGC 61.569 60.000 0.00 0.00 46.39 4.84
262 263 2.357517 AACAGAGGAGGCAACGCG 60.358 61.111 3.53 3.53 46.39 6.01
263 264 3.165160 AACAGAGGAGGCAACGCGT 62.165 57.895 5.58 5.58 46.39 6.01
264 265 3.114616 CAGAGGAGGCAACGCGTG 61.115 66.667 14.98 8.57 46.39 5.34
287 288 3.554692 CTGGCGCCGACGTTCATC 61.555 66.667 23.90 0.00 42.83 2.92
288 289 4.365505 TGGCGCCGACGTTCATCA 62.366 61.111 23.90 0.00 42.83 3.07
289 290 3.115892 GGCGCCGACGTTCATCAA 61.116 61.111 12.58 0.00 42.83 2.57
290 291 2.095843 GCGCCGACGTTCATCAAC 59.904 61.111 0.00 0.00 42.83 3.18
291 292 2.776072 CGCCGACGTTCATCAACC 59.224 61.111 0.00 0.00 33.53 3.77
292 293 1.736645 CGCCGACGTTCATCAACCT 60.737 57.895 0.00 0.00 33.53 3.50
293 294 1.683790 CGCCGACGTTCATCAACCTC 61.684 60.000 0.00 0.00 33.53 3.85
294 295 0.669318 GCCGACGTTCATCAACCTCA 60.669 55.000 0.00 0.00 0.00 3.86
295 296 2.007049 GCCGACGTTCATCAACCTCAT 61.007 52.381 0.00 0.00 0.00 2.90
296 297 1.927174 CCGACGTTCATCAACCTCATC 59.073 52.381 0.00 0.00 0.00 2.92
297 298 2.606108 CGACGTTCATCAACCTCATCA 58.394 47.619 0.00 0.00 0.00 3.07
298 299 2.600420 CGACGTTCATCAACCTCATCAG 59.400 50.000 0.00 0.00 0.00 2.90
299 300 2.349886 GACGTTCATCAACCTCATCAGC 59.650 50.000 0.00 0.00 0.00 4.26
300 301 1.667724 CGTTCATCAACCTCATCAGCC 59.332 52.381 0.00 0.00 0.00 4.85
301 302 2.019984 GTTCATCAACCTCATCAGCCC 58.980 52.381 0.00 0.00 0.00 5.19
302 303 0.548031 TCATCAACCTCATCAGCCCC 59.452 55.000 0.00 0.00 0.00 5.80
303 304 0.816825 CATCAACCTCATCAGCCCCG 60.817 60.000 0.00 0.00 0.00 5.73
304 305 1.987807 ATCAACCTCATCAGCCCCGG 61.988 60.000 0.00 0.00 0.00 5.73
305 306 3.411517 AACCTCATCAGCCCCGGG 61.412 66.667 15.80 15.80 0.00 5.73
306 307 3.943137 AACCTCATCAGCCCCGGGA 62.943 63.158 26.32 0.42 0.00 5.14
307 308 3.089874 CCTCATCAGCCCCGGGAA 61.090 66.667 26.32 4.40 0.00 3.97
308 309 2.507944 CTCATCAGCCCCGGGAAG 59.492 66.667 26.32 11.63 0.00 3.46
309 310 3.089874 TCATCAGCCCCGGGAAGG 61.090 66.667 26.32 10.81 40.63 3.46
310 311 3.089874 CATCAGCCCCGGGAAGGA 61.090 66.667 26.32 16.47 45.00 3.36
311 312 3.090532 ATCAGCCCCGGGAAGGAC 61.091 66.667 26.32 5.61 45.00 3.85
355 356 4.135493 GCTGACGGCGCGAACTTC 62.135 66.667 12.10 5.45 0.00 3.01
356 357 2.430921 CTGACGGCGCGAACTTCT 60.431 61.111 12.10 0.00 0.00 2.85
357 358 2.022129 CTGACGGCGCGAACTTCTT 61.022 57.895 12.10 0.00 0.00 2.52
358 359 1.557443 CTGACGGCGCGAACTTCTTT 61.557 55.000 12.10 0.00 0.00 2.52
359 360 1.155424 TGACGGCGCGAACTTCTTTT 61.155 50.000 12.10 0.00 0.00 2.27
360 361 0.785979 GACGGCGCGAACTTCTTTTA 59.214 50.000 12.10 0.00 0.00 1.52
361 362 0.788391 ACGGCGCGAACTTCTTTTAG 59.212 50.000 12.10 0.00 0.00 1.85
362 363 0.788391 CGGCGCGAACTTCTTTTAGT 59.212 50.000 12.10 0.00 0.00 2.24
363 364 1.193874 CGGCGCGAACTTCTTTTAGTT 59.806 47.619 12.10 0.00 40.92 2.24
364 365 2.349155 CGGCGCGAACTTCTTTTAGTTT 60.349 45.455 12.10 0.00 38.43 2.66
365 366 3.624900 GGCGCGAACTTCTTTTAGTTTT 58.375 40.909 12.10 0.00 38.43 2.43
366 367 4.608890 CGGCGCGAACTTCTTTTAGTTTTA 60.609 41.667 12.10 0.00 38.43 1.52
367 368 4.610122 GGCGCGAACTTCTTTTAGTTTTAC 59.390 41.667 12.10 0.00 38.43 2.01
368 369 5.438117 GCGCGAACTTCTTTTAGTTTTACT 58.562 37.500 12.10 0.00 38.43 2.24
369 370 6.346838 GGCGCGAACTTCTTTTAGTTTTACTA 60.347 38.462 12.10 0.00 38.43 1.82
370 371 7.065283 GCGCGAACTTCTTTTAGTTTTACTAA 58.935 34.615 12.10 0.00 38.79 2.24
371 372 7.743400 GCGCGAACTTCTTTTAGTTTTACTAAT 59.257 33.333 12.10 0.00 40.08 1.73
372 373 9.037417 CGCGAACTTCTTTTAGTTTTACTAATG 57.963 33.333 0.00 0.00 40.08 1.90
373 374 9.874215 GCGAACTTCTTTTAGTTTTACTAATGT 57.126 29.630 0.55 0.00 40.08 2.71
389 390 9.699703 TTTACTAATGTTTAAATGGACTTTGGC 57.300 29.630 0.00 0.00 0.00 4.52
390 391 6.697395 ACTAATGTTTAAATGGACTTTGGCC 58.303 36.000 0.00 0.00 0.00 5.36
391 392 3.651803 TGTTTAAATGGACTTTGGCCG 57.348 42.857 0.00 0.00 0.00 6.13
392 393 2.297597 TGTTTAAATGGACTTTGGCCGG 59.702 45.455 0.00 0.00 0.00 6.13
393 394 0.892063 TTAAATGGACTTTGGCCGGC 59.108 50.000 21.18 21.18 0.00 6.13
394 395 0.251386 TAAATGGACTTTGGCCGGCA 60.251 50.000 30.85 12.04 0.00 5.69
395 396 1.535204 AAATGGACTTTGGCCGGCAG 61.535 55.000 30.85 20.04 0.00 4.85
396 397 3.944250 ATGGACTTTGGCCGGCAGG 62.944 63.158 30.85 16.59 41.62 4.85
397 398 4.660938 GGACTTTGGCCGGCAGGT 62.661 66.667 30.85 19.80 40.50 4.00
398 399 2.597510 GACTTTGGCCGGCAGGTT 60.598 61.111 30.85 7.76 40.50 3.50
399 400 2.912025 ACTTTGGCCGGCAGGTTG 60.912 61.111 30.85 15.93 40.50 3.77
400 401 2.597217 CTTTGGCCGGCAGGTTGA 60.597 61.111 30.85 6.38 40.50 3.18
401 402 1.978617 CTTTGGCCGGCAGGTTGAT 60.979 57.895 30.85 0.00 40.50 2.57
402 403 1.532794 TTTGGCCGGCAGGTTGATT 60.533 52.632 30.85 0.00 40.50 2.57
403 404 1.814772 TTTGGCCGGCAGGTTGATTG 61.815 55.000 30.85 0.00 40.50 2.67
404 405 3.451894 GGCCGGCAGGTTGATTGG 61.452 66.667 30.85 0.00 40.50 3.16
405 406 2.676471 GCCGGCAGGTTGATTGGT 60.676 61.111 24.80 0.00 40.50 3.67
406 407 2.700773 GCCGGCAGGTTGATTGGTC 61.701 63.158 24.80 0.00 40.50 4.02
407 408 1.303236 CCGGCAGGTTGATTGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
408 409 0.680921 CCGGCAGGTTGATTGGTCAT 60.681 55.000 0.00 0.00 33.56 3.06
409 410 1.176527 CGGCAGGTTGATTGGTCATT 58.823 50.000 0.00 0.00 33.56 2.57
410 411 1.545582 CGGCAGGTTGATTGGTCATTT 59.454 47.619 0.00 0.00 33.56 2.32
411 412 2.752354 CGGCAGGTTGATTGGTCATTTA 59.248 45.455 0.00 0.00 33.56 1.40
412 413 3.381272 CGGCAGGTTGATTGGTCATTTAT 59.619 43.478 0.00 0.00 33.56 1.40
413 414 4.685924 GGCAGGTTGATTGGTCATTTATG 58.314 43.478 0.00 0.00 33.56 1.90
414 415 4.160252 GGCAGGTTGATTGGTCATTTATGT 59.840 41.667 0.00 0.00 33.56 2.29
415 416 5.337491 GGCAGGTTGATTGGTCATTTATGTT 60.337 40.000 0.00 0.00 33.56 2.71
416 417 6.165577 GCAGGTTGATTGGTCATTTATGTTT 58.834 36.000 0.00 0.00 33.56 2.83
417 418 7.319646 GCAGGTTGATTGGTCATTTATGTTTA 58.680 34.615 0.00 0.00 33.56 2.01
418 419 7.816995 GCAGGTTGATTGGTCATTTATGTTTAA 59.183 33.333 0.00 0.00 33.56 1.52
419 420 9.874205 CAGGTTGATTGGTCATTTATGTTTAAT 57.126 29.630 0.00 0.00 33.56 1.40
446 447 7.551035 TGTTTAATCATGCATATTTTTGCCC 57.449 32.000 0.00 0.00 42.06 5.36
447 448 7.337167 TGTTTAATCATGCATATTTTTGCCCT 58.663 30.769 0.00 0.00 42.06 5.19
448 449 7.828223 TGTTTAATCATGCATATTTTTGCCCTT 59.172 29.630 0.00 0.00 42.06 3.95
449 450 7.789273 TTAATCATGCATATTTTTGCCCTTG 57.211 32.000 0.00 0.00 42.06 3.61
450 451 4.822685 TCATGCATATTTTTGCCCTTGT 57.177 36.364 0.00 0.00 42.06 3.16
451 452 4.505808 TCATGCATATTTTTGCCCTTGTG 58.494 39.130 0.00 0.00 42.06 3.33
452 453 4.020396 TCATGCATATTTTTGCCCTTGTGT 60.020 37.500 0.00 0.00 42.06 3.72
453 454 3.661944 TGCATATTTTTGCCCTTGTGTG 58.338 40.909 0.00 0.00 42.06 3.82
454 455 2.416202 GCATATTTTTGCCCTTGTGTGC 59.584 45.455 0.00 0.00 36.60 4.57
455 456 3.661944 CATATTTTTGCCCTTGTGTGCA 58.338 40.909 0.00 0.00 35.27 4.57
456 457 1.952193 ATTTTTGCCCTTGTGTGCAC 58.048 45.000 10.75 10.75 37.18 4.57
457 458 0.459237 TTTTTGCCCTTGTGTGCACG 60.459 50.000 13.13 0.00 37.18 5.34
458 459 1.315981 TTTTGCCCTTGTGTGCACGA 61.316 50.000 13.13 0.00 37.18 4.35
459 460 1.106351 TTTGCCCTTGTGTGCACGAT 61.106 50.000 13.13 0.00 37.18 3.73
460 461 1.106351 TTGCCCTTGTGTGCACGATT 61.106 50.000 13.13 0.00 37.18 3.34
461 462 1.106351 TGCCCTTGTGTGCACGATTT 61.106 50.000 13.13 0.00 31.31 2.17
462 463 0.031994 GCCCTTGTGTGCACGATTTT 59.968 50.000 13.13 0.00 0.00 1.82
463 464 1.537990 GCCCTTGTGTGCACGATTTTT 60.538 47.619 13.13 0.00 0.00 1.94
481 482 0.241481 TTTTTGTTATGGCCGGTCGC 59.759 50.000 0.00 0.00 0.00 5.19
482 483 0.606944 TTTTGTTATGGCCGGTCGCT 60.607 50.000 0.00 0.00 37.74 4.93
483 484 1.302383 TTTGTTATGGCCGGTCGCTG 61.302 55.000 0.00 0.00 37.74 5.18
484 485 2.173758 TTGTTATGGCCGGTCGCTGA 62.174 55.000 0.00 0.00 37.74 4.26
485 486 1.227556 GTTATGGCCGGTCGCTGAT 60.228 57.895 0.00 0.00 37.74 2.90
486 487 0.814010 GTTATGGCCGGTCGCTGATT 60.814 55.000 0.00 0.00 37.74 2.57
487 488 0.107410 TTATGGCCGGTCGCTGATTT 60.107 50.000 0.00 0.00 37.74 2.17
488 489 0.813610 TATGGCCGGTCGCTGATTTG 60.814 55.000 0.00 0.00 37.74 2.32
489 490 3.508840 GGCCGGTCGCTGATTTGG 61.509 66.667 1.90 0.00 37.74 3.28
490 491 2.435938 GCCGGTCGCTGATTTGGA 60.436 61.111 1.90 0.00 0.00 3.53
491 492 1.819632 GCCGGTCGCTGATTTGGAT 60.820 57.895 1.90 0.00 0.00 3.41
492 493 1.776034 GCCGGTCGCTGATTTGGATC 61.776 60.000 1.90 0.00 0.00 3.36
493 494 0.179073 CCGGTCGCTGATTTGGATCT 60.179 55.000 0.00 0.00 33.28 2.75
494 495 0.933097 CGGTCGCTGATTTGGATCTG 59.067 55.000 0.00 0.00 35.14 2.90
515 516 2.118076 CCCATTGGGTGCACCTGT 59.882 61.111 33.91 17.85 38.25 4.00
516 517 1.382240 CCCATTGGGTGCACCTGTA 59.618 57.895 33.91 19.83 38.25 2.74
517 518 0.680921 CCCATTGGGTGCACCTGTAG 60.681 60.000 33.91 20.93 38.25 2.74
518 519 0.327924 CCATTGGGTGCACCTGTAGA 59.672 55.000 33.91 16.19 41.11 2.59
519 520 1.064463 CCATTGGGTGCACCTGTAGAT 60.064 52.381 33.91 17.59 41.11 1.98
520 521 2.292267 CATTGGGTGCACCTGTAGATC 58.708 52.381 33.91 16.73 41.11 2.75
521 522 1.656587 TTGGGTGCACCTGTAGATCT 58.343 50.000 33.91 0.00 41.11 2.75
522 523 2.543037 TGGGTGCACCTGTAGATCTA 57.457 50.000 33.91 0.00 41.11 1.98
523 524 2.827755 TGGGTGCACCTGTAGATCTAA 58.172 47.619 33.91 5.68 41.11 2.10
524 525 3.178046 TGGGTGCACCTGTAGATCTAAA 58.822 45.455 33.91 0.00 41.11 1.85
525 526 3.780294 TGGGTGCACCTGTAGATCTAAAT 59.220 43.478 33.91 0.00 41.11 1.40
526 527 4.966168 TGGGTGCACCTGTAGATCTAAATA 59.034 41.667 33.91 0.00 41.11 1.40
527 528 5.427157 TGGGTGCACCTGTAGATCTAAATAA 59.573 40.000 33.91 0.00 41.11 1.40
528 529 6.069905 TGGGTGCACCTGTAGATCTAAATAAA 60.070 38.462 33.91 0.00 41.11 1.40
529 530 6.826741 GGGTGCACCTGTAGATCTAAATAAAA 59.173 38.462 33.91 0.00 35.85 1.52
530 531 7.502561 GGGTGCACCTGTAGATCTAAATAAAAT 59.497 37.037 33.91 0.00 35.85 1.82
531 532 8.903820 GGTGCACCTGTAGATCTAAATAAAATT 58.096 33.333 29.12 0.00 0.00 1.82
532 533 9.722056 GTGCACCTGTAGATCTAAATAAAATTG 57.278 33.333 5.22 0.00 0.00 2.32
533 534 8.405531 TGCACCTGTAGATCTAAATAAAATTGC 58.594 33.333 3.40 6.31 0.00 3.56
534 535 8.405531 GCACCTGTAGATCTAAATAAAATTGCA 58.594 33.333 3.40 0.00 0.00 4.08
537 538 9.403110 CCTGTAGATCTAAATAAAATTGCATGC 57.597 33.333 11.82 11.82 0.00 4.06
538 539 9.403110 CTGTAGATCTAAATAAAATTGCATGCC 57.597 33.333 16.68 0.00 0.00 4.40
539 540 8.075574 TGTAGATCTAAATAAAATTGCATGCCG 58.924 33.333 16.68 0.00 0.00 5.69
540 541 7.275888 AGATCTAAATAAAATTGCATGCCGA 57.724 32.000 16.68 4.01 0.00 5.54
541 542 7.141363 AGATCTAAATAAAATTGCATGCCGAC 58.859 34.615 16.68 0.00 0.00 4.79
542 543 6.201226 TCTAAATAAAATTGCATGCCGACA 57.799 33.333 16.68 0.00 0.00 4.35
543 544 6.033341 TCTAAATAAAATTGCATGCCGACAC 58.967 36.000 16.68 0.00 0.00 3.67
544 545 3.865011 ATAAAATTGCATGCCGACACA 57.135 38.095 16.68 0.00 0.00 3.72
545 546 2.522836 AAAATTGCATGCCGACACAA 57.477 40.000 16.68 1.18 0.00 3.33
546 547 2.522836 AAATTGCATGCCGACACAAA 57.477 40.000 16.68 0.34 0.00 2.83
547 548 2.747396 AATTGCATGCCGACACAAAT 57.253 40.000 16.68 3.10 0.00 2.32
548 549 1.999048 ATTGCATGCCGACACAAATG 58.001 45.000 16.68 0.00 0.00 2.32
549 550 0.672889 TTGCATGCCGACACAAATGT 59.327 45.000 16.68 0.00 43.71 2.71
550 551 0.672889 TGCATGCCGACACAAATGTT 59.327 45.000 16.68 0.00 39.95 2.71
551 552 1.335780 TGCATGCCGACACAAATGTTC 60.336 47.619 16.68 0.00 39.95 3.18
552 553 1.605500 CATGCCGACACAAATGTTCG 58.394 50.000 9.58 9.58 39.95 3.95
553 554 0.109781 ATGCCGACACAAATGTTCGC 60.110 50.000 10.53 8.09 39.95 4.70
554 555 1.163420 TGCCGACACAAATGTTCGCT 61.163 50.000 10.53 0.00 39.95 4.93
555 556 0.040425 GCCGACACAAATGTTCGCTT 60.040 50.000 10.53 0.00 39.95 4.68
556 557 1.673760 CCGACACAAATGTTCGCTTG 58.326 50.000 10.53 0.00 39.95 4.01
557 558 1.662876 CCGACACAAATGTTCGCTTGG 60.663 52.381 10.53 0.00 39.95 3.61
558 559 1.002900 CGACACAAATGTTCGCTTGGT 60.003 47.619 5.62 0.00 39.95 3.67
559 560 2.650608 GACACAAATGTTCGCTTGGTC 58.349 47.619 0.00 0.00 39.95 4.02
560 561 1.002900 ACACAAATGTTCGCTTGGTCG 60.003 47.619 0.00 0.00 34.46 4.79
561 562 1.262950 CACAAATGTTCGCTTGGTCGA 59.737 47.619 0.00 0.00 36.60 4.20
562 563 2.095768 CACAAATGTTCGCTTGGTCGAT 60.096 45.455 0.00 0.00 38.37 3.59
563 564 2.159627 ACAAATGTTCGCTTGGTCGATC 59.840 45.455 0.00 0.00 38.37 3.69
564 565 1.369625 AATGTTCGCTTGGTCGATCC 58.630 50.000 0.00 0.00 38.37 3.36
565 566 0.249120 ATGTTCGCTTGGTCGATCCA 59.751 50.000 0.00 0.00 45.60 3.41
572 573 4.713946 TGGTCGATCCAAACAGGC 57.286 55.556 4.51 0.00 44.12 4.85
573 574 1.757949 TGGTCGATCCAAACAGGCA 59.242 52.632 4.51 0.00 44.12 4.75
574 575 0.109532 TGGTCGATCCAAACAGGCAA 59.890 50.000 4.51 0.00 44.12 4.52
575 576 1.243902 GGTCGATCCAAACAGGCAAA 58.756 50.000 0.00 0.00 37.29 3.68
576 577 1.611491 GGTCGATCCAAACAGGCAAAA 59.389 47.619 0.00 0.00 37.29 2.44
577 578 2.035321 GGTCGATCCAAACAGGCAAAAA 59.965 45.455 0.00 0.00 37.29 1.94
596 597 3.481112 AAACGAACAAAGTGTGTGTCC 57.519 42.857 0.00 0.00 40.60 4.02
597 598 1.003851 ACGAACAAAGTGTGTGTCCG 58.996 50.000 0.00 0.00 40.60 4.79
598 599 1.003851 CGAACAAAGTGTGTGTCCGT 58.996 50.000 0.00 0.00 40.60 4.69
599 600 1.395608 CGAACAAAGTGTGTGTCCGTT 59.604 47.619 0.00 0.00 40.60 4.44
600 601 2.159626 CGAACAAAGTGTGTGTCCGTTT 60.160 45.455 0.00 0.00 40.60 3.60
601 602 3.062369 CGAACAAAGTGTGTGTCCGTTTA 59.938 43.478 0.00 0.00 40.60 2.01
602 603 4.584394 GAACAAAGTGTGTGTCCGTTTAG 58.416 43.478 0.00 0.00 40.60 1.85
603 604 2.940410 ACAAAGTGTGTGTCCGTTTAGG 59.060 45.455 0.00 0.00 39.72 2.69
604 605 2.940410 CAAAGTGTGTGTCCGTTTAGGT 59.060 45.455 0.00 0.00 41.99 3.08
605 606 2.521105 AGTGTGTGTCCGTTTAGGTC 57.479 50.000 0.00 0.00 41.99 3.85
606 607 1.134226 GTGTGTGTCCGTTTAGGTCG 58.866 55.000 0.00 0.00 41.99 4.79
607 608 0.598158 TGTGTGTCCGTTTAGGTCGC 60.598 55.000 0.00 0.00 41.99 5.19
608 609 0.319297 GTGTGTCCGTTTAGGTCGCT 60.319 55.000 0.00 0.00 41.99 4.93
609 610 0.319211 TGTGTCCGTTTAGGTCGCTG 60.319 55.000 0.00 0.00 41.99 5.18
610 611 1.373748 TGTCCGTTTAGGTCGCTGC 60.374 57.895 0.00 0.00 41.99 5.25
611 612 2.126228 TCCGTTTAGGTCGCTGCG 60.126 61.111 17.25 17.25 41.99 5.18
612 613 2.431942 CCGTTTAGGTCGCTGCGT 60.432 61.111 22.48 5.32 34.51 5.24
613 614 2.025418 CCGTTTAGGTCGCTGCGTT 61.025 57.895 22.48 11.32 34.51 4.84
614 615 1.129809 CGTTTAGGTCGCTGCGTTG 59.870 57.895 22.48 0.00 0.00 4.10
615 616 1.495951 GTTTAGGTCGCTGCGTTGG 59.504 57.895 22.48 0.00 0.00 3.77
616 617 0.947180 GTTTAGGTCGCTGCGTTGGA 60.947 55.000 22.48 0.00 0.00 3.53
617 618 0.669318 TTTAGGTCGCTGCGTTGGAG 60.669 55.000 22.48 0.00 0.00 3.86
618 619 1.812686 TTAGGTCGCTGCGTTGGAGT 61.813 55.000 22.48 4.81 0.00 3.85
619 620 1.812686 TAGGTCGCTGCGTTGGAGTT 61.813 55.000 22.48 4.80 0.00 3.01
620 621 2.551270 GTCGCTGCGTTGGAGTTG 59.449 61.111 22.48 0.00 0.00 3.16
621 622 3.345808 TCGCTGCGTTGGAGTTGC 61.346 61.111 22.48 0.00 0.00 4.17
622 623 3.349006 CGCTGCGTTGGAGTTGCT 61.349 61.111 14.93 0.00 0.00 3.91
635 636 5.902613 TGGAGTTGCTCTAAAATTCATGG 57.097 39.130 0.00 0.00 0.00 3.66
641 642 7.899973 AGTTGCTCTAAAATTCATGGATTTGT 58.100 30.769 12.83 6.14 30.06 2.83
651 652 8.543293 AAATTCATGGATTTGTCCACATAGAT 57.457 30.769 11.33 0.00 43.37 1.98
701 719 1.716826 GGTGGTTTGGAACGTCGCAA 61.717 55.000 0.00 0.00 0.00 4.85
718 740 2.221517 CGCAAGAATGTTTTGCTTTGGG 59.778 45.455 8.15 0.00 46.62 4.12
721 743 2.837498 AGAATGTTTTGCTTTGGGTGC 58.163 42.857 0.00 0.00 0.00 5.01
748 770 1.153628 GTGCGGGCTCGTGATACTT 60.154 57.895 8.30 0.00 38.89 2.24
822 844 3.251729 GTCTACCCAAACCGGAAAACTTC 59.748 47.826 9.46 0.00 36.56 3.01
833 855 4.653888 AAACTTCCCCCACGGCCG 62.654 66.667 26.86 26.86 0.00 6.13
895 919 2.158959 GGATTCGCGTGACGTCCAG 61.159 63.158 19.53 8.07 44.19 3.86
902 926 2.355837 GTGACGTCCAGCGCAGAA 60.356 61.111 14.12 0.00 46.11 3.02
926 950 1.599797 AGCCCCCACGAACGAAAAG 60.600 57.895 0.14 0.00 0.00 2.27
937 969 4.058817 ACGAACGAAAAGAAAGCAGAGAT 58.941 39.130 0.14 0.00 0.00 2.75
972 1004 2.515290 TCTATCTCCCACGCGCGA 60.515 61.111 39.36 14.00 0.00 5.87
1255 1287 3.259902 GGCAACTACACTGTAAGGCTAC 58.740 50.000 0.00 0.00 39.30 3.58
1257 1289 4.159135 GGCAACTACACTGTAAGGCTACTA 59.841 45.833 0.00 0.00 39.30 1.82
1338 1377 3.231818 CTTAGGTCCCGATCCAGTGTAT 58.768 50.000 0.00 0.00 0.00 2.29
1468 1509 1.671328 TGCGACCTCGTCTTAGAGATG 59.329 52.381 0.00 0.00 40.57 2.90
1635 1676 4.516698 CAGGAATTGCTTCAACTGTGTACT 59.483 41.667 0.00 0.00 32.70 2.73
1643 1684 4.740934 GCTTCAACTGTGTACTCTGAGGTT 60.741 45.833 9.85 0.00 0.00 3.50
1652 1693 4.404073 GTGTACTCTGAGGTTCTGATCCAT 59.596 45.833 9.85 0.00 0.00 3.41
1828 1869 0.974010 TAGGACCCTGGTAAGTGCCG 60.974 60.000 0.00 0.00 0.00 5.69
1883 1924 5.938125 GGCAACTTTAGTTACAAGAGGATGA 59.062 40.000 0.00 0.00 36.32 2.92
1966 2007 1.070601 ACGTTAGGGCGGTGTTACTTT 59.929 47.619 0.00 0.00 35.98 2.66
1975 2016 1.606668 CGGTGTTACTTTGTGCCACAT 59.393 47.619 0.00 0.00 0.00 3.21
1993 2034 5.816449 CACATGTGTGGCACTTATCATTA 57.184 39.130 19.83 0.00 42.10 1.90
2095 2147 4.924305 GCATCCAGCCAAATCAATAGAA 57.076 40.909 0.00 0.00 37.23 2.10
2139 2191 2.134789 AGCAACCAGGAAGGCATAAG 57.865 50.000 0.00 0.00 43.14 1.73
2701 3577 2.224606 CTGGCACATCGCTATCCATTT 58.775 47.619 0.00 0.00 41.91 2.32
2747 3623 5.506317 GCTCAAAGTAGTTGACAGCAATGTT 60.506 40.000 0.00 0.00 41.47 2.71
2748 3624 5.820131 TCAAAGTAGTTGACAGCAATGTTG 58.180 37.500 0.00 0.00 41.47 3.33
2749 3625 4.442073 CAAAGTAGTTGACAGCAATGTTGC 59.558 41.667 9.63 9.63 46.29 4.17
2776 3652 4.469469 ACTCCTTTCCAAAAGGATTCCA 57.531 40.909 18.78 0.29 44.75 3.53
2936 3813 0.824109 TAGTAATGCCTGAGCGCACT 59.176 50.000 11.47 2.94 42.70 4.40
2947 3824 1.343142 TGAGCGCACTAAGTCTTTCCA 59.657 47.619 11.47 0.00 0.00 3.53
3145 4031 2.349886 GCTGCTGCTACATTGACACTAC 59.650 50.000 8.53 0.00 36.03 2.73
3146 4032 3.854666 CTGCTGCTACATTGACACTACT 58.145 45.455 0.00 0.00 0.00 2.57
3148 4034 4.998788 TGCTGCTACATTGACACTACTAG 58.001 43.478 0.00 0.00 0.00 2.57
3149 4035 3.799420 GCTGCTACATTGACACTACTAGC 59.201 47.826 0.00 0.00 0.00 3.42
3150 4036 4.678044 GCTGCTACATTGACACTACTAGCA 60.678 45.833 0.00 0.00 36.18 3.49
3152 4038 5.977635 TGCTACATTGACACTACTAGCATT 58.022 37.500 0.00 0.00 33.39 3.56
3154 4040 5.277058 GCTACATTGACACTACTAGCATTGC 60.277 44.000 0.00 0.00 0.00 3.56
3155 4041 3.941483 ACATTGACACTACTAGCATTGCC 59.059 43.478 4.70 0.00 0.00 4.52
3156 4042 2.293677 TGACACTACTAGCATTGCCG 57.706 50.000 4.70 0.00 0.00 5.69
3157 4043 1.134818 TGACACTACTAGCATTGCCGG 60.135 52.381 4.70 0.00 0.00 6.13
3158 4044 0.902531 ACACTACTAGCATTGCCGGT 59.097 50.000 1.90 7.14 0.00 5.28
3386 4274 2.818921 TGCTTGCTTATGGGGTTTGAT 58.181 42.857 0.00 0.00 0.00 2.57
3413 4304 7.506938 TGAATCCAACATCTTCTTCCTTTTCTT 59.493 33.333 0.00 0.00 0.00 2.52
3548 4440 6.488006 GGGATGCTAGCTTCATAGAAAAATCA 59.512 38.462 26.51 0.00 0.00 2.57
3615 4507 5.441500 TGAGTGGACACCTTTGATTAAACA 58.558 37.500 0.00 0.00 0.00 2.83
3729 4621 2.929398 GCTTGTGTTTGGTTTTGACCTG 59.071 45.455 0.00 0.00 0.00 4.00
3811 4703 5.831525 TCTAAGTCAACACTAGTTCTGACCA 59.168 40.000 22.19 13.89 36.57 4.02
3894 4786 2.437281 CTCCAGCCTGACATCATTAGGT 59.563 50.000 0.00 0.00 34.06 3.08
4068 4960 2.100197 TCATCCGAGTCTACACCTTGG 58.900 52.381 0.00 0.00 35.14 3.61
4209 5109 5.248477 ACTTACAATACACCACTCCATGACT 59.752 40.000 0.00 0.00 0.00 3.41
4258 5158 3.764434 ACCACTCCATGACAGTAGTACAG 59.236 47.826 2.52 0.00 0.00 2.74
4877 7203 3.768922 GAGCTGCTCAGGACGCCT 61.769 66.667 24.02 0.00 0.00 5.52
5066 7399 5.452078 TTTTTGGATTGAAGCGATGAAGT 57.548 34.783 0.00 0.00 0.00 3.01
5085 7418 3.609103 GTGGGACGCTAATGCTATTTG 57.391 47.619 0.00 0.00 36.97 2.32
5184 7517 1.937924 GCCCCTTTCCTGGCCACTAT 61.938 60.000 0.00 0.00 41.97 2.12
5303 7637 4.556104 GCTGAGTGTGACGTTTAGTAGACA 60.556 45.833 0.00 0.00 0.00 3.41
5305 7639 5.276270 TGAGTGTGACGTTTAGTAGACAAC 58.724 41.667 0.00 0.00 30.02 3.32
5532 7867 6.592607 TGGAGTTTGATTTTCTGTCGGTATAC 59.407 38.462 0.00 0.00 0.00 1.47
6083 8429 7.732025 TCTCCTTTTGATGTTCAGTACAAGTA 58.268 34.615 0.00 0.00 40.89 2.24
6370 8717 7.337689 CCATTTCACTTCAGATTCTTCACCATA 59.662 37.037 0.00 0.00 0.00 2.74
6373 8720 5.721480 TCACTTCAGATTCTTCACCATAGGA 59.279 40.000 0.00 0.00 0.00 2.94
6756 9108 2.349817 GGTGGCTGATAATCGCATTTCG 60.350 50.000 0.00 0.00 40.15 3.46
6999 9351 4.602340 GTACCAGACCACTCTTTCTTCA 57.398 45.455 0.00 0.00 0.00 3.02
7249 9602 6.294675 CCAAACTCCAATGAGCAGATTGTTAA 60.295 38.462 6.88 0.00 42.74 2.01
7256 9609 7.446931 TCCAATGAGCAGATTGTTAAAGTAACA 59.553 33.333 6.88 0.00 46.13 2.41
7340 9693 3.746492 GTCTGTTGTTGTGATCTGTACCC 59.254 47.826 0.00 0.00 0.00 3.69
7512 10033 5.521735 CAGTATCAGTAGATGCACCTGTTTC 59.478 44.000 0.00 0.00 39.09 2.78
7553 10078 4.708726 ATTGCAAGTGCTGGTATTTCTC 57.291 40.909 4.94 0.00 42.66 2.87
7736 10280 0.178947 TTTGGGTGGTGGGTTCCATC 60.179 55.000 0.00 0.00 39.81 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.778143 ACGCCGAACCAGATGGGC 62.778 66.667 3.48 0.00 42.05 5.36
20 21 2.819595 CACGCCGAACCAGATGGG 60.820 66.667 3.48 0.00 44.81 4.00
21 22 2.100631 GTCACGCCGAACCAGATGG 61.101 63.158 0.00 0.00 42.17 3.51
22 23 2.444624 CGTCACGCCGAACCAGATG 61.445 63.158 0.00 0.00 0.00 2.90
23 24 2.126071 CGTCACGCCGAACCAGAT 60.126 61.111 0.00 0.00 0.00 2.90
46 47 3.741830 GAGGTAGGCGGCTTCCTGC 62.742 68.421 36.37 24.10 37.01 4.85
47 48 2.501610 GAGGTAGGCGGCTTCCTG 59.498 66.667 36.37 0.00 37.01 3.86
48 49 2.764547 GGAGGTAGGCGGCTTCCT 60.765 66.667 32.81 32.81 40.21 3.36
49 50 2.666098 TTGGAGGTAGGCGGCTTCC 61.666 63.158 24.71 24.71 0.00 3.46
50 51 1.449778 GTTGGAGGTAGGCGGCTTC 60.450 63.158 19.76 12.84 0.00 3.86
51 52 1.774894 TTGTTGGAGGTAGGCGGCTT 61.775 55.000 19.76 0.00 0.00 4.35
52 53 1.562672 ATTGTTGGAGGTAGGCGGCT 61.563 55.000 18.33 18.33 0.00 5.52
53 54 1.077716 ATTGTTGGAGGTAGGCGGC 60.078 57.895 0.00 0.00 0.00 6.53
54 55 0.748005 CCATTGTTGGAGGTAGGCGG 60.748 60.000 0.00 0.00 46.92 6.13
55 56 2.780595 CCATTGTTGGAGGTAGGCG 58.219 57.895 0.00 0.00 46.92 5.52
64 65 2.398554 CGGCGTCCTCCATTGTTGG 61.399 63.158 0.00 0.00 45.15 3.77
65 66 2.398554 CCGGCGTCCTCCATTGTTG 61.399 63.158 6.01 0.00 0.00 3.33
66 67 2.046314 CCGGCGTCCTCCATTGTT 60.046 61.111 6.01 0.00 0.00 2.83
67 68 4.778143 GCCGGCGTCCTCCATTGT 62.778 66.667 12.58 0.00 0.00 2.71
68 69 2.978452 CTAGCCGGCGTCCTCCATTG 62.978 65.000 23.20 0.00 0.00 2.82
69 70 2.762459 TAGCCGGCGTCCTCCATT 60.762 61.111 23.20 1.83 0.00 3.16
70 71 3.227276 CTAGCCGGCGTCCTCCAT 61.227 66.667 23.20 2.71 0.00 3.41
71 72 4.753662 ACTAGCCGGCGTCCTCCA 62.754 66.667 23.20 0.21 0.00 3.86
72 73 4.208686 CACTAGCCGGCGTCCTCC 62.209 72.222 23.20 0.00 0.00 4.30
73 74 1.660560 TTACACTAGCCGGCGTCCTC 61.661 60.000 23.20 0.00 0.00 3.71
74 75 1.664321 CTTACACTAGCCGGCGTCCT 61.664 60.000 23.20 5.85 0.00 3.85
75 76 1.226888 CTTACACTAGCCGGCGTCC 60.227 63.158 23.20 0.00 0.00 4.79
76 77 0.248539 CTCTTACACTAGCCGGCGTC 60.249 60.000 23.20 0.00 0.00 5.19
77 78 1.807886 CTCTTACACTAGCCGGCGT 59.192 57.895 23.20 15.65 0.00 5.68
78 79 1.589196 GCTCTTACACTAGCCGGCG 60.589 63.158 23.20 10.77 32.40 6.46
79 80 1.589196 CGCTCTTACACTAGCCGGC 60.589 63.158 21.89 21.89 35.22 6.13
80 81 1.589196 GCGCTCTTACACTAGCCGG 60.589 63.158 0.00 0.00 35.22 6.13
81 82 1.939785 CGCGCTCTTACACTAGCCG 60.940 63.158 5.56 0.00 35.22 5.52
82 83 2.231618 GCGCGCTCTTACACTAGCC 61.232 63.158 26.67 0.00 35.22 3.93
83 84 2.231618 GGCGCGCTCTTACACTAGC 61.232 63.158 32.29 5.31 35.33 3.42
84 85 1.939785 CGGCGCGCTCTTACACTAG 60.940 63.158 32.29 5.74 0.00 2.57
85 86 2.101575 CGGCGCGCTCTTACACTA 59.898 61.111 32.29 0.00 0.00 2.74
86 87 3.744719 TCGGCGCGCTCTTACACT 61.745 61.111 32.29 0.00 0.00 3.55
87 88 3.542742 GTCGGCGCGCTCTTACAC 61.543 66.667 32.29 11.38 0.00 2.90
88 89 3.744719 AGTCGGCGCGCTCTTACA 61.745 61.111 32.29 5.54 0.00 2.41
89 90 3.248171 CAGTCGGCGCGCTCTTAC 61.248 66.667 32.29 21.87 0.00 2.34
100 101 3.490793 ATCCATCGCTCGCAGTCGG 62.491 63.158 0.00 0.00 36.13 4.79
101 102 2.026734 ATCCATCGCTCGCAGTCG 59.973 61.111 0.00 0.00 0.00 4.18
102 103 1.953138 CCATCCATCGCTCGCAGTC 60.953 63.158 0.00 0.00 0.00 3.51
103 104 2.107750 CCATCCATCGCTCGCAGT 59.892 61.111 0.00 0.00 0.00 4.40
104 105 1.664017 CTCCATCCATCGCTCGCAG 60.664 63.158 0.00 0.00 0.00 5.18
105 106 2.418777 CTCCATCCATCGCTCGCA 59.581 61.111 0.00 0.00 0.00 5.10
106 107 3.040763 GCTCCATCCATCGCTCGC 61.041 66.667 0.00 0.00 0.00 5.03
107 108 1.664017 CAGCTCCATCCATCGCTCG 60.664 63.158 0.00 0.00 0.00 5.03
108 109 1.301558 CCAGCTCCATCCATCGCTC 60.302 63.158 0.00 0.00 0.00 5.03
109 110 1.756408 CTCCAGCTCCATCCATCGCT 61.756 60.000 0.00 0.00 0.00 4.93
110 111 1.301558 CTCCAGCTCCATCCATCGC 60.302 63.158 0.00 0.00 0.00 4.58
111 112 1.301558 GCTCCAGCTCCATCCATCG 60.302 63.158 0.00 0.00 38.21 3.84
112 113 4.796314 GCTCCAGCTCCATCCATC 57.204 61.111 0.00 0.00 38.21 3.51
135 136 2.818714 CTCTGCTTCCTGCGCCAG 60.819 66.667 4.18 3.49 46.63 4.85
136 137 4.399395 CCTCTGCTTCCTGCGCCA 62.399 66.667 4.18 0.00 46.63 5.69
137 138 4.087892 TCCTCTGCTTCCTGCGCC 62.088 66.667 4.18 0.00 46.63 6.53
138 139 2.511145 CTCCTCTGCTTCCTGCGC 60.511 66.667 0.00 0.00 46.63 6.09
139 140 2.186384 CCTCCTCTGCTTCCTGCG 59.814 66.667 0.00 0.00 46.63 5.18
140 141 1.521616 CTCCTCCTCTGCTTCCTGC 59.478 63.158 0.00 0.00 43.25 4.85
141 142 1.521616 GCTCCTCCTCTGCTTCCTG 59.478 63.158 0.00 0.00 0.00 3.86
142 143 2.057408 CGCTCCTCCTCTGCTTCCT 61.057 63.158 0.00 0.00 0.00 3.36
143 144 2.498726 CGCTCCTCCTCTGCTTCC 59.501 66.667 0.00 0.00 0.00 3.46
144 145 2.202864 GCGCTCCTCCTCTGCTTC 60.203 66.667 0.00 0.00 0.00 3.86
145 146 3.780173 GGCGCTCCTCCTCTGCTT 61.780 66.667 7.64 0.00 0.00 3.91
146 147 4.775977 AGGCGCTCCTCCTCTGCT 62.776 66.667 7.64 0.00 38.72 4.24
147 148 4.527583 CAGGCGCTCCTCCTCTGC 62.528 72.222 7.64 0.00 41.93 4.26
148 149 3.847602 CCAGGCGCTCCTCCTCTG 61.848 72.222 7.64 3.73 41.93 3.35
149 150 3.608759 TTCCAGGCGCTCCTCCTCT 62.609 63.158 7.64 0.00 41.93 3.69
150 151 2.585791 CTTTCCAGGCGCTCCTCCTC 62.586 65.000 7.64 0.00 41.93 3.71
151 152 2.607750 TTTCCAGGCGCTCCTCCT 60.608 61.111 7.64 0.00 41.93 3.69
152 153 2.124942 CTTTCCAGGCGCTCCTCC 60.125 66.667 7.64 0.00 41.93 4.30
153 154 2.124942 CCTTTCCAGGCGCTCCTC 60.125 66.667 7.64 0.00 41.93 3.71
154 155 3.721706 CCCTTTCCAGGCGCTCCT 61.722 66.667 7.64 0.00 45.66 3.69
155 156 3.689002 CTCCCTTTCCAGGCGCTCC 62.689 68.421 7.64 0.00 39.20 4.70
156 157 2.124942 CTCCCTTTCCAGGCGCTC 60.125 66.667 7.64 0.00 39.20 5.03
157 158 3.721706 CCTCCCTTTCCAGGCGCT 61.722 66.667 7.64 0.00 39.20 5.92
158 159 3.689002 CTCCTCCCTTTCCAGGCGC 62.689 68.421 0.00 0.00 39.20 6.53
159 160 2.586792 CTCCTCCCTTTCCAGGCG 59.413 66.667 0.00 0.00 39.20 5.52
160 161 1.616628 TCCTCCTCCCTTTCCAGGC 60.617 63.158 0.00 0.00 39.20 4.85
161 162 0.985490 CCTCCTCCTCCCTTTCCAGG 60.985 65.000 0.00 0.00 40.45 4.45
162 163 0.043334 TCCTCCTCCTCCCTTTCCAG 59.957 60.000 0.00 0.00 0.00 3.86
163 164 0.043334 CTCCTCCTCCTCCCTTTCCA 59.957 60.000 0.00 0.00 0.00 3.53
164 165 1.341913 GCTCCTCCTCCTCCCTTTCC 61.342 65.000 0.00 0.00 0.00 3.13
165 166 1.681486 CGCTCCTCCTCCTCCCTTTC 61.681 65.000 0.00 0.00 0.00 2.62
166 167 1.687493 CGCTCCTCCTCCTCCCTTT 60.687 63.158 0.00 0.00 0.00 3.11
167 168 2.042435 CGCTCCTCCTCCTCCCTT 60.042 66.667 0.00 0.00 0.00 3.95
168 169 3.351885 ACGCTCCTCCTCCTCCCT 61.352 66.667 0.00 0.00 0.00 4.20
169 170 3.151022 CACGCTCCTCCTCCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
170 171 3.844090 GCACGCTCCTCCTCCTCC 61.844 72.222 0.00 0.00 0.00 4.30
171 172 3.844090 GGCACGCTCCTCCTCCTC 61.844 72.222 0.00 0.00 0.00 3.71
189 190 3.041351 TTGCACTACCGCTGCACG 61.041 61.111 0.00 2.27 44.32 5.34
190 191 2.556287 GTTGCACTACCGCTGCAC 59.444 61.111 0.00 0.00 44.32 4.57
191 192 2.668212 GGTTGCACTACCGCTGCA 60.668 61.111 0.00 0.00 42.95 4.41
197 198 3.053896 GGTGGCGGTTGCACTACC 61.054 66.667 0.00 0.00 45.35 3.18
198 199 2.281208 TGGTGGCGGTTGCACTAC 60.281 61.111 0.00 0.00 45.35 2.73
199 200 1.473497 TAGTGGTGGCGGTTGCACTA 61.473 55.000 0.00 0.00 45.35 2.74
200 201 2.731691 CTAGTGGTGGCGGTTGCACT 62.732 60.000 0.00 0.00 45.35 4.40
201 202 2.281208 TAGTGGTGGCGGTTGCAC 60.281 61.111 0.00 0.00 45.35 4.57
202 203 2.031919 CTAGTGGTGGCGGTTGCA 59.968 61.111 0.00 0.00 45.35 4.08
203 204 2.746277 CCTAGTGGTGGCGGTTGC 60.746 66.667 0.00 0.00 41.71 4.17
204 205 1.375523 GTCCTAGTGGTGGCGGTTG 60.376 63.158 0.00 0.00 34.23 3.77
205 206 1.827399 CTGTCCTAGTGGTGGCGGTT 61.827 60.000 0.00 0.00 34.23 4.44
206 207 2.203728 TGTCCTAGTGGTGGCGGT 60.204 61.111 0.00 0.00 34.23 5.68
207 208 2.579201 CTGTCCTAGTGGTGGCGG 59.421 66.667 0.00 0.00 34.23 6.13
208 209 2.125512 GCTGTCCTAGTGGTGGCG 60.126 66.667 0.00 0.00 34.23 5.69
209 210 2.269241 GGCTGTCCTAGTGGTGGC 59.731 66.667 0.00 0.00 34.23 5.01
210 211 1.599047 CTGGCTGTCCTAGTGGTGG 59.401 63.158 0.00 0.00 34.23 4.61
211 212 1.078848 GCTGGCTGTCCTAGTGGTG 60.079 63.158 0.00 0.00 34.23 4.17
212 213 1.536418 TGCTGGCTGTCCTAGTGGT 60.536 57.895 0.00 0.00 34.23 4.16
213 214 1.078848 GTGCTGGCTGTCCTAGTGG 60.079 63.158 0.00 0.00 0.00 4.00
214 215 1.078848 GGTGCTGGCTGTCCTAGTG 60.079 63.158 0.00 0.00 0.00 2.74
215 216 2.650116 CGGTGCTGGCTGTCCTAGT 61.650 63.158 0.00 0.00 0.00 2.57
216 217 2.185350 CGGTGCTGGCTGTCCTAG 59.815 66.667 0.00 0.00 0.00 3.02
217 218 3.390521 CCGGTGCTGGCTGTCCTA 61.391 66.667 0.00 0.00 0.00 2.94
229 230 4.308458 TTGTCTGTCCCGCCGGTG 62.308 66.667 8.42 8.42 0.00 4.94
230 231 4.309950 GTTGTCTGTCCCGCCGGT 62.310 66.667 1.90 0.00 0.00 5.28
231 232 4.308458 TGTTGTCTGTCCCGCCGG 62.308 66.667 0.00 0.00 0.00 6.13
232 233 2.738521 CTGTTGTCTGTCCCGCCG 60.739 66.667 0.00 0.00 0.00 6.46
233 234 1.374758 CTCTGTTGTCTGTCCCGCC 60.375 63.158 0.00 0.00 0.00 6.13
234 235 1.374758 CCTCTGTTGTCTGTCCCGC 60.375 63.158 0.00 0.00 0.00 6.13
235 236 0.244994 CTCCTCTGTTGTCTGTCCCG 59.755 60.000 0.00 0.00 0.00 5.14
236 237 0.610687 CCTCCTCTGTTGTCTGTCCC 59.389 60.000 0.00 0.00 0.00 4.46
237 238 0.036858 GCCTCCTCTGTTGTCTGTCC 60.037 60.000 0.00 0.00 0.00 4.02
238 239 0.681733 TGCCTCCTCTGTTGTCTGTC 59.318 55.000 0.00 0.00 0.00 3.51
239 240 1.131638 TTGCCTCCTCTGTTGTCTGT 58.868 50.000 0.00 0.00 0.00 3.41
240 241 1.517242 GTTGCCTCCTCTGTTGTCTG 58.483 55.000 0.00 0.00 0.00 3.51
241 242 0.034059 CGTTGCCTCCTCTGTTGTCT 59.966 55.000 0.00 0.00 0.00 3.41
242 243 1.569479 GCGTTGCCTCCTCTGTTGTC 61.569 60.000 0.00 0.00 0.00 3.18
243 244 1.598130 GCGTTGCCTCCTCTGTTGT 60.598 57.895 0.00 0.00 0.00 3.32
244 245 2.671177 CGCGTTGCCTCCTCTGTTG 61.671 63.158 0.00 0.00 0.00 3.33
245 246 2.357517 CGCGTTGCCTCCTCTGTT 60.358 61.111 0.00 0.00 0.00 3.16
246 247 3.616721 ACGCGTTGCCTCCTCTGT 61.617 61.111 5.58 0.00 0.00 3.41
247 248 3.114616 CACGCGTTGCCTCCTCTG 61.115 66.667 10.22 0.00 0.00 3.35
270 271 3.554692 GATGAACGTCGGCGCCAG 61.555 66.667 28.98 19.33 42.83 4.85
271 272 3.867700 TTGATGAACGTCGGCGCCA 62.868 57.895 28.98 8.73 42.83 5.69
272 273 3.115892 TTGATGAACGTCGGCGCC 61.116 61.111 19.07 19.07 42.83 6.53
273 274 2.095843 GTTGATGAACGTCGGCGC 59.904 61.111 10.50 0.00 42.83 6.53
274 275 1.683790 GAGGTTGATGAACGTCGGCG 61.684 60.000 8.42 8.42 37.26 6.46
275 276 0.669318 TGAGGTTGATGAACGTCGGC 60.669 55.000 12.08 0.00 45.85 5.54
276 277 1.927174 GATGAGGTTGATGAACGTCGG 59.073 52.381 12.08 0.00 45.85 4.79
277 278 2.600420 CTGATGAGGTTGATGAACGTCG 59.400 50.000 12.08 0.00 45.85 5.12
278 279 2.349886 GCTGATGAGGTTGATGAACGTC 59.650 50.000 10.33 10.33 44.04 4.34
279 280 2.350522 GCTGATGAGGTTGATGAACGT 58.649 47.619 0.00 0.00 32.28 3.99
280 281 1.667724 GGCTGATGAGGTTGATGAACG 59.332 52.381 0.00 0.00 32.28 3.95
281 282 2.019984 GGGCTGATGAGGTTGATGAAC 58.980 52.381 0.00 0.00 0.00 3.18
282 283 1.064463 GGGGCTGATGAGGTTGATGAA 60.064 52.381 0.00 0.00 0.00 2.57
283 284 0.548031 GGGGCTGATGAGGTTGATGA 59.452 55.000 0.00 0.00 0.00 2.92
284 285 0.816825 CGGGGCTGATGAGGTTGATG 60.817 60.000 0.00 0.00 0.00 3.07
285 286 1.528824 CGGGGCTGATGAGGTTGAT 59.471 57.895 0.00 0.00 0.00 2.57
286 287 2.669133 CCGGGGCTGATGAGGTTGA 61.669 63.158 0.00 0.00 0.00 3.18
287 288 2.124570 CCGGGGCTGATGAGGTTG 60.125 66.667 0.00 0.00 0.00 3.77
288 289 3.411517 CCCGGGGCTGATGAGGTT 61.412 66.667 14.71 0.00 0.00 3.50
289 290 3.943137 TTCCCGGGGCTGATGAGGT 62.943 63.158 23.50 0.00 0.00 3.85
290 291 3.089874 TTCCCGGGGCTGATGAGG 61.090 66.667 23.50 0.00 0.00 3.86
291 292 2.507944 CTTCCCGGGGCTGATGAG 59.492 66.667 23.50 3.77 0.00 2.90
292 293 3.089874 CCTTCCCGGGGCTGATGA 61.090 66.667 23.50 0.00 0.00 2.92
293 294 3.089874 TCCTTCCCGGGGCTGATG 61.090 66.667 23.50 2.96 0.00 3.07
294 295 3.090532 GTCCTTCCCGGGGCTGAT 61.091 66.667 23.50 0.00 0.00 2.90
338 339 4.135493 GAAGTTCGCGCCGTCAGC 62.135 66.667 0.00 0.00 38.52 4.26
339 340 1.557443 AAAGAAGTTCGCGCCGTCAG 61.557 55.000 0.00 0.00 0.00 3.51
340 341 1.155424 AAAAGAAGTTCGCGCCGTCA 61.155 50.000 0.00 0.00 0.00 4.35
341 342 0.785979 TAAAAGAAGTTCGCGCCGTC 59.214 50.000 0.00 1.99 0.00 4.79
342 343 0.788391 CTAAAAGAAGTTCGCGCCGT 59.212 50.000 0.00 0.00 0.00 5.68
343 344 0.788391 ACTAAAAGAAGTTCGCGCCG 59.212 50.000 0.00 0.00 0.00 6.46
344 345 2.963498 AACTAAAAGAAGTTCGCGCC 57.037 45.000 0.00 0.00 34.60 6.53
345 346 5.438117 AGTAAAACTAAAAGAAGTTCGCGC 58.562 37.500 0.00 0.00 38.76 6.86
346 347 9.037417 CATTAGTAAAACTAAAAGAAGTTCGCG 57.963 33.333 0.00 0.00 43.16 5.87
347 348 9.874215 ACATTAGTAAAACTAAAAGAAGTTCGC 57.126 29.630 3.80 0.00 43.16 4.70
363 364 9.699703 GCCAAAGTCCATTTAAACATTAGTAAA 57.300 29.630 0.00 0.00 0.00 2.01
364 365 8.308207 GGCCAAAGTCCATTTAAACATTAGTAA 58.692 33.333 0.00 0.00 0.00 2.24
365 366 7.362229 CGGCCAAAGTCCATTTAAACATTAGTA 60.362 37.037 2.24 0.00 0.00 1.82
366 367 6.571537 CGGCCAAAGTCCATTTAAACATTAGT 60.572 38.462 2.24 0.00 0.00 2.24
367 368 5.804979 CGGCCAAAGTCCATTTAAACATTAG 59.195 40.000 2.24 0.00 0.00 1.73
368 369 5.336849 CCGGCCAAAGTCCATTTAAACATTA 60.337 40.000 2.24 0.00 0.00 1.90
369 370 4.562552 CCGGCCAAAGTCCATTTAAACATT 60.563 41.667 2.24 0.00 0.00 2.71
370 371 3.056179 CCGGCCAAAGTCCATTTAAACAT 60.056 43.478 2.24 0.00 0.00 2.71
371 372 2.297597 CCGGCCAAAGTCCATTTAAACA 59.702 45.455 2.24 0.00 0.00 2.83
372 373 2.929161 GCCGGCCAAAGTCCATTTAAAC 60.929 50.000 18.11 0.00 0.00 2.01
373 374 1.273886 GCCGGCCAAAGTCCATTTAAA 59.726 47.619 18.11 0.00 0.00 1.52
374 375 0.892063 GCCGGCCAAAGTCCATTTAA 59.108 50.000 18.11 0.00 0.00 1.52
375 376 0.251386 TGCCGGCCAAAGTCCATTTA 60.251 50.000 26.77 0.00 0.00 1.40
376 377 1.532794 TGCCGGCCAAAGTCCATTT 60.533 52.632 26.77 0.00 0.00 2.32
377 378 1.978617 CTGCCGGCCAAAGTCCATT 60.979 57.895 26.77 0.00 0.00 3.16
378 379 2.361610 CTGCCGGCCAAAGTCCAT 60.362 61.111 26.77 0.00 0.00 3.41
379 380 4.659172 CCTGCCGGCCAAAGTCCA 62.659 66.667 26.77 0.19 0.00 4.02
380 381 4.660938 ACCTGCCGGCCAAAGTCC 62.661 66.667 26.77 0.00 0.00 3.85
381 382 2.597510 AACCTGCCGGCCAAAGTC 60.598 61.111 26.77 0.00 0.00 3.01
382 383 2.713531 ATCAACCTGCCGGCCAAAGT 62.714 55.000 26.77 13.14 0.00 2.66
383 384 1.535204 AATCAACCTGCCGGCCAAAG 61.535 55.000 26.77 15.21 0.00 2.77
384 385 1.532794 AATCAACCTGCCGGCCAAA 60.533 52.632 26.77 3.87 0.00 3.28
385 386 2.117206 AATCAACCTGCCGGCCAA 59.883 55.556 26.77 4.79 0.00 4.52
386 387 2.676121 CAATCAACCTGCCGGCCA 60.676 61.111 26.77 11.42 0.00 5.36
387 388 3.451894 CCAATCAACCTGCCGGCC 61.452 66.667 26.77 6.44 0.00 6.13
388 389 2.676471 ACCAATCAACCTGCCGGC 60.676 61.111 22.73 22.73 0.00 6.13
389 390 0.680921 ATGACCAATCAACCTGCCGG 60.681 55.000 0.00 0.00 38.69 6.13
390 391 1.176527 AATGACCAATCAACCTGCCG 58.823 50.000 0.00 0.00 38.69 5.69
391 392 4.160252 ACATAAATGACCAATCAACCTGCC 59.840 41.667 0.00 0.00 38.69 4.85
392 393 5.329035 ACATAAATGACCAATCAACCTGC 57.671 39.130 0.00 0.00 38.69 4.85
393 394 9.874205 ATTAAACATAAATGACCAATCAACCTG 57.126 29.630 0.00 0.00 38.69 4.00
433 434 2.416202 GCACACAAGGGCAAAAATATGC 59.584 45.455 0.00 0.00 45.67 3.14
434 435 3.432933 GTGCACACAAGGGCAAAAATATG 59.567 43.478 13.17 0.00 42.45 1.78
435 436 3.663025 GTGCACACAAGGGCAAAAATAT 58.337 40.909 13.17 0.00 42.45 1.28
436 437 2.544694 CGTGCACACAAGGGCAAAAATA 60.545 45.455 18.64 0.00 42.45 1.40
437 438 1.805871 CGTGCACACAAGGGCAAAAAT 60.806 47.619 18.64 0.00 42.45 1.82
438 439 0.459237 CGTGCACACAAGGGCAAAAA 60.459 50.000 18.64 0.00 42.45 1.94
439 440 1.140589 CGTGCACACAAGGGCAAAA 59.859 52.632 18.64 0.00 42.45 2.44
440 441 1.106351 ATCGTGCACACAAGGGCAAA 61.106 50.000 18.64 0.00 42.45 3.68
441 442 1.106351 AATCGTGCACACAAGGGCAA 61.106 50.000 18.64 0.00 42.45 4.52
442 443 1.106351 AAATCGTGCACACAAGGGCA 61.106 50.000 18.64 0.00 37.77 5.36
443 444 0.031994 AAAATCGTGCACACAAGGGC 59.968 50.000 18.64 0.00 0.00 5.19
444 445 2.507339 AAAAATCGTGCACACAAGGG 57.493 45.000 18.64 0.00 0.00 3.95
462 463 0.241481 GCGACCGGCCATAACAAAAA 59.759 50.000 0.00 0.00 34.80 1.94
463 464 0.606944 AGCGACCGGCCATAACAAAA 60.607 50.000 0.00 0.00 45.17 2.44
464 465 1.003112 AGCGACCGGCCATAACAAA 60.003 52.632 0.00 0.00 45.17 2.83
465 466 1.743623 CAGCGACCGGCCATAACAA 60.744 57.895 0.00 0.00 45.17 2.83
466 467 1.966901 ATCAGCGACCGGCCATAACA 61.967 55.000 0.00 0.00 45.17 2.41
467 468 0.814010 AATCAGCGACCGGCCATAAC 60.814 55.000 0.00 0.00 45.17 1.89
468 469 0.107410 AAATCAGCGACCGGCCATAA 60.107 50.000 0.00 0.00 45.17 1.90
469 470 0.813610 CAAATCAGCGACCGGCCATA 60.814 55.000 0.00 0.00 45.17 2.74
470 471 2.114670 CAAATCAGCGACCGGCCAT 61.115 57.895 0.00 0.00 45.17 4.40
471 472 2.745884 CAAATCAGCGACCGGCCA 60.746 61.111 0.00 0.00 45.17 5.36
472 473 3.508840 CCAAATCAGCGACCGGCC 61.509 66.667 0.00 0.00 45.17 6.13
473 474 1.776034 GATCCAAATCAGCGACCGGC 61.776 60.000 0.00 0.00 44.05 6.13
474 475 0.179073 AGATCCAAATCAGCGACCGG 60.179 55.000 0.00 0.00 34.07 5.28
475 476 0.933097 CAGATCCAAATCAGCGACCG 59.067 55.000 0.00 0.00 34.07 4.79
476 477 0.659957 GCAGATCCAAATCAGCGACC 59.340 55.000 0.00 0.00 35.12 4.79
477 478 0.659957 GGCAGATCCAAATCAGCGAC 59.340 55.000 0.00 0.00 43.36 5.19
478 479 0.252761 TGGCAGATCCAAATCAGCGA 59.747 50.000 0.00 0.00 43.36 4.93
479 480 2.784547 TGGCAGATCCAAATCAGCG 58.215 52.632 0.00 0.00 43.36 5.18
487 488 1.307309 CCAATGGGTGGCAGATCCA 59.693 57.895 6.61 6.61 41.72 3.41
488 489 4.265206 CCAATGGGTGGCAGATCC 57.735 61.111 0.00 0.00 41.72 3.36
499 500 0.327924 TCTACAGGTGCACCCAATGG 59.672 55.000 32.29 18.99 36.42 3.16
500 501 2.092753 AGATCTACAGGTGCACCCAATG 60.093 50.000 32.29 25.09 36.42 2.82
501 502 2.200081 AGATCTACAGGTGCACCCAAT 58.800 47.619 32.29 19.72 36.42 3.16
502 503 1.656587 AGATCTACAGGTGCACCCAA 58.343 50.000 32.29 16.61 36.42 4.12
503 504 2.543037 TAGATCTACAGGTGCACCCA 57.457 50.000 32.29 16.64 36.42 4.51
504 505 3.906720 TTTAGATCTACAGGTGCACCC 57.093 47.619 32.29 14.93 36.42 4.61
505 506 7.859325 TTTTATTTAGATCTACAGGTGCACC 57.141 36.000 29.22 29.22 0.00 5.01
506 507 9.722056 CAATTTTATTTAGATCTACAGGTGCAC 57.278 33.333 8.80 8.80 0.00 4.57
507 508 8.405531 GCAATTTTATTTAGATCTACAGGTGCA 58.594 33.333 0.67 0.00 0.00 4.57
508 509 8.405531 TGCAATTTTATTTAGATCTACAGGTGC 58.594 33.333 0.67 5.43 0.00 5.01
511 512 9.403110 GCATGCAATTTTATTTAGATCTACAGG 57.597 33.333 14.21 0.00 0.00 4.00
512 513 9.403110 GGCATGCAATTTTATTTAGATCTACAG 57.597 33.333 21.36 0.00 0.00 2.74
513 514 8.075574 CGGCATGCAATTTTATTTAGATCTACA 58.924 33.333 21.36 0.00 0.00 2.74
514 515 8.289618 TCGGCATGCAATTTTATTTAGATCTAC 58.710 33.333 21.36 0.00 0.00 2.59
515 516 8.289618 GTCGGCATGCAATTTTATTTAGATCTA 58.710 33.333 21.36 0.00 0.00 1.98
516 517 7.141363 GTCGGCATGCAATTTTATTTAGATCT 58.859 34.615 21.36 0.00 0.00 2.75
517 518 6.917477 TGTCGGCATGCAATTTTATTTAGATC 59.083 34.615 21.36 0.00 0.00 2.75
518 519 6.697019 GTGTCGGCATGCAATTTTATTTAGAT 59.303 34.615 21.36 0.00 0.00 1.98
519 520 6.033341 GTGTCGGCATGCAATTTTATTTAGA 58.967 36.000 21.36 0.00 0.00 2.10
520 521 5.804473 TGTGTCGGCATGCAATTTTATTTAG 59.196 36.000 21.36 0.00 0.00 1.85
521 522 5.714047 TGTGTCGGCATGCAATTTTATTTA 58.286 33.333 21.36 0.00 0.00 1.40
522 523 4.564041 TGTGTCGGCATGCAATTTTATTT 58.436 34.783 21.36 0.00 0.00 1.40
523 524 4.185467 TGTGTCGGCATGCAATTTTATT 57.815 36.364 21.36 0.00 0.00 1.40
524 525 3.865011 TGTGTCGGCATGCAATTTTAT 57.135 38.095 21.36 0.00 0.00 1.40
525 526 3.650070 TTGTGTCGGCATGCAATTTTA 57.350 38.095 21.36 0.00 0.00 1.52
526 527 2.522836 TTGTGTCGGCATGCAATTTT 57.477 40.000 21.36 0.00 0.00 1.82
527 528 2.522836 TTTGTGTCGGCATGCAATTT 57.477 40.000 21.36 0.00 0.00 1.82
528 529 2.288948 ACATTTGTGTCGGCATGCAATT 60.289 40.909 21.36 0.00 0.00 2.32
529 530 1.273048 ACATTTGTGTCGGCATGCAAT 59.727 42.857 21.36 5.66 0.00 3.56
530 531 0.672889 ACATTTGTGTCGGCATGCAA 59.327 45.000 21.36 3.63 0.00 4.08
531 532 0.672889 AACATTTGTGTCGGCATGCA 59.327 45.000 21.36 0.00 0.00 3.96
532 533 1.339711 GAACATTTGTGTCGGCATGC 58.660 50.000 9.90 9.90 0.00 4.06
533 534 1.605500 CGAACATTTGTGTCGGCATG 58.394 50.000 0.00 0.00 0.00 4.06
534 535 0.109781 GCGAACATTTGTGTCGGCAT 60.110 50.000 0.00 0.00 0.00 4.40
535 536 1.163420 AGCGAACATTTGTGTCGGCA 61.163 50.000 13.26 0.00 0.00 5.69
536 537 0.040425 AAGCGAACATTTGTGTCGGC 60.040 50.000 13.26 0.00 0.00 5.54
537 538 1.662876 CCAAGCGAACATTTGTGTCGG 60.663 52.381 13.26 0.00 0.00 4.79
538 539 1.002900 ACCAAGCGAACATTTGTGTCG 60.003 47.619 9.43 9.43 0.00 4.35
539 540 2.650608 GACCAAGCGAACATTTGTGTC 58.349 47.619 0.00 0.00 0.00 3.67
540 541 1.002900 CGACCAAGCGAACATTTGTGT 60.003 47.619 0.00 0.00 0.00 3.72
541 542 1.262950 TCGACCAAGCGAACATTTGTG 59.737 47.619 0.00 0.00 37.35 3.33
542 543 1.588674 TCGACCAAGCGAACATTTGT 58.411 45.000 0.00 0.00 37.35 2.83
543 544 2.476185 GGATCGACCAAGCGAACATTTG 60.476 50.000 0.00 0.00 44.22 2.32
544 545 1.737793 GGATCGACCAAGCGAACATTT 59.262 47.619 0.00 0.00 44.22 2.32
545 546 1.338674 TGGATCGACCAAGCGAACATT 60.339 47.619 4.51 0.00 46.75 2.71
546 547 0.249120 TGGATCGACCAAGCGAACAT 59.751 50.000 4.51 0.00 46.75 2.71
547 548 1.668867 TGGATCGACCAAGCGAACA 59.331 52.632 4.51 0.00 46.75 3.18
548 549 4.590487 TGGATCGACCAAGCGAAC 57.410 55.556 4.51 0.00 46.75 3.95
556 557 1.243902 TTTGCCTGTTTGGATCGACC 58.756 50.000 0.00 0.00 38.35 4.79
557 558 3.363341 TTTTTGCCTGTTTGGATCGAC 57.637 42.857 0.00 0.00 38.35 4.20
574 575 4.231439 GGACACACACTTTGTTCGTTTTT 58.769 39.130 0.00 0.00 35.67 1.94
575 576 3.668491 CGGACACACACTTTGTTCGTTTT 60.668 43.478 0.00 0.00 40.49 2.43
576 577 2.159626 CGGACACACACTTTGTTCGTTT 60.160 45.455 0.00 0.00 40.49 3.60
577 578 1.395608 CGGACACACACTTTGTTCGTT 59.604 47.619 0.00 0.00 40.49 3.85
578 579 1.003851 CGGACACACACTTTGTTCGT 58.996 50.000 0.00 0.00 40.49 3.85
579 580 3.798506 CGGACACACACTTTGTTCG 57.201 52.632 0.00 0.00 39.51 3.95
580 581 3.481112 AAACGGACACACACTTTGTTC 57.519 42.857 0.00 0.00 35.67 3.18
581 582 3.375922 CCTAAACGGACACACACTTTGTT 59.624 43.478 0.00 0.00 32.30 2.83
582 583 2.940410 CCTAAACGGACACACACTTTGT 59.060 45.455 0.00 0.00 34.45 2.83
583 584 2.940410 ACCTAAACGGACACACACTTTG 59.060 45.455 0.00 0.00 36.31 2.77
584 585 3.200483 GACCTAAACGGACACACACTTT 58.800 45.455 0.00 0.00 36.31 2.66
585 586 2.800629 CGACCTAAACGGACACACACTT 60.801 50.000 0.00 0.00 36.31 3.16
586 587 1.269413 CGACCTAAACGGACACACACT 60.269 52.381 0.00 0.00 36.31 3.55
587 588 1.134226 CGACCTAAACGGACACACAC 58.866 55.000 0.00 0.00 36.31 3.82
588 589 0.598158 GCGACCTAAACGGACACACA 60.598 55.000 0.00 0.00 36.31 3.72
589 590 0.319297 AGCGACCTAAACGGACACAC 60.319 55.000 0.00 0.00 36.31 3.82
590 591 0.319211 CAGCGACCTAAACGGACACA 60.319 55.000 0.00 0.00 36.31 3.72
591 592 1.623973 GCAGCGACCTAAACGGACAC 61.624 60.000 0.00 0.00 36.31 3.67
592 593 1.373748 GCAGCGACCTAAACGGACA 60.374 57.895 0.00 0.00 36.31 4.02
593 594 2.442188 CGCAGCGACCTAAACGGAC 61.442 63.158 9.98 0.00 36.31 4.79
594 595 2.126228 CGCAGCGACCTAAACGGA 60.126 61.111 9.98 0.00 36.31 4.69
595 596 2.025418 AACGCAGCGACCTAAACGG 61.025 57.895 24.65 0.00 39.35 4.44
596 597 1.129809 CAACGCAGCGACCTAAACG 59.870 57.895 24.65 0.00 0.00 3.60
597 598 0.947180 TCCAACGCAGCGACCTAAAC 60.947 55.000 24.65 0.00 0.00 2.01
598 599 0.669318 CTCCAACGCAGCGACCTAAA 60.669 55.000 24.65 0.38 0.00 1.85
599 600 1.080093 CTCCAACGCAGCGACCTAA 60.080 57.895 24.65 1.53 0.00 2.69
600 601 1.812686 AACTCCAACGCAGCGACCTA 61.813 55.000 24.65 3.04 0.00 3.08
601 602 3.165160 AACTCCAACGCAGCGACCT 62.165 57.895 24.65 1.91 0.00 3.85
602 603 2.665185 AACTCCAACGCAGCGACC 60.665 61.111 24.65 0.00 0.00 4.79
603 604 2.551270 CAACTCCAACGCAGCGAC 59.449 61.111 24.65 0.00 0.00 5.19
604 605 3.345808 GCAACTCCAACGCAGCGA 61.346 61.111 24.65 0.00 0.00 4.93
605 606 3.300667 GAGCAACTCCAACGCAGCG 62.301 63.158 14.82 14.82 0.00 5.18
606 607 0.670546 TAGAGCAACTCCAACGCAGC 60.671 55.000 0.00 0.00 0.00 5.25
607 608 1.795768 TTAGAGCAACTCCAACGCAG 58.204 50.000 0.00 0.00 0.00 5.18
608 609 2.248280 TTTAGAGCAACTCCAACGCA 57.752 45.000 0.00 0.00 0.00 5.24
609 610 3.831715 ATTTTAGAGCAACTCCAACGC 57.168 42.857 0.00 0.00 0.00 4.84
610 611 5.356882 TGAATTTTAGAGCAACTCCAACG 57.643 39.130 0.00 0.00 0.00 4.10
611 612 6.071952 TCCATGAATTTTAGAGCAACTCCAAC 60.072 38.462 0.00 0.00 0.00 3.77
612 613 6.009589 TCCATGAATTTTAGAGCAACTCCAA 58.990 36.000 0.00 0.00 0.00 3.53
613 614 5.569355 TCCATGAATTTTAGAGCAACTCCA 58.431 37.500 0.00 0.00 0.00 3.86
614 615 6.705863 ATCCATGAATTTTAGAGCAACTCC 57.294 37.500 0.00 0.00 0.00 3.85
615 616 8.031277 ACAAATCCATGAATTTTAGAGCAACTC 58.969 33.333 0.00 0.00 0.00 3.01
616 617 7.899973 ACAAATCCATGAATTTTAGAGCAACT 58.100 30.769 0.00 0.00 0.00 3.16
617 618 7.276438 GGACAAATCCATGAATTTTAGAGCAAC 59.724 37.037 0.00 0.00 45.47 4.17
618 619 7.322664 GGACAAATCCATGAATTTTAGAGCAA 58.677 34.615 0.00 0.00 45.47 3.91
619 620 6.866480 GGACAAATCCATGAATTTTAGAGCA 58.134 36.000 0.00 0.00 45.47 4.26
641 642 8.623903 GCACAAATTCAAGAATATCTATGTGGA 58.376 33.333 17.33 0.00 0.00 4.02
651 652 3.366883 GGCACGGCACAAATTCAAGAATA 60.367 43.478 0.00 0.00 0.00 1.75
676 677 1.205179 ACGTTCCAAACCACCCAAAAC 59.795 47.619 0.00 0.00 0.00 2.43
701 719 2.802774 CGCACCCAAAGCAAAACATTCT 60.803 45.455 0.00 0.00 0.00 2.40
748 770 1.303236 CCGGTTTGGGATGCTCACA 60.303 57.895 0.00 0.00 0.00 3.58
833 855 0.375106 CGGATGCTCTTCGGCTTTTC 59.625 55.000 0.00 0.00 0.00 2.29
895 919 2.472909 GGGGCTGTGTATTCTGCGC 61.473 63.158 0.00 0.00 41.64 6.09
900 924 0.035820 TTCGTGGGGGCTGTGTATTC 60.036 55.000 0.00 0.00 0.00 1.75
902 926 1.298667 GTTCGTGGGGGCTGTGTAT 59.701 57.895 0.00 0.00 0.00 2.29
926 950 5.739959 AGGTTTTCTCCTATCTCTGCTTTC 58.260 41.667 0.00 0.00 35.87 2.62
937 969 8.387813 GGAGATAGAGATCTAGGTTTTCTCCTA 58.612 40.741 19.95 6.28 42.80 2.94
972 1004 3.067480 GCTCTGCTCTGCTCTCGCT 62.067 63.158 0.00 0.00 36.97 4.93
1130 1162 2.341101 ATGACCTCGCGGAAGTCGT 61.341 57.895 6.13 9.56 41.72 4.34
1255 1287 1.404315 GGCGAGAACAGGGACAGTTAG 60.404 57.143 0.00 0.00 38.44 2.34
1257 1289 1.122019 AGGCGAGAACAGGGACAGTT 61.122 55.000 0.00 0.00 41.88 3.16
1338 1377 2.375174 ACTAAAAGCCATGGGTCACAGA 59.625 45.455 18.59 0.42 0.00 3.41
1468 1509 1.544724 AGAGCAGAGACTCCACTGTC 58.455 55.000 0.00 0.00 37.39 3.51
1498 1539 1.502190 GCTAAACAGCAAGCCGGAC 59.498 57.895 5.05 0.00 32.40 4.79
1635 1676 7.345653 ACAACTATAATGGATCAGAACCTCAGA 59.654 37.037 0.00 0.00 0.00 3.27
1643 1684 5.665360 TGGGTCACAACTATAATGGATCAGA 59.335 40.000 0.00 0.00 0.00 3.27
1652 1693 4.518278 ATGCCATGGGTCACAACTATAA 57.482 40.909 15.13 0.00 0.00 0.98
1719 1760 4.640789 AGCGTTTCACACATTTTAACCA 57.359 36.364 0.00 0.00 0.00 3.67
1764 1805 1.202927 ACGCTAAATGGGGCATAGCAT 60.203 47.619 5.06 0.00 41.62 3.79
1808 1849 0.540454 GGCACTTACCAGGGTCCTAC 59.460 60.000 0.00 0.00 0.00 3.18
1819 1860 1.985684 GAATTGCTTTGCGGCACTTAC 59.014 47.619 0.05 0.00 42.27 2.34
1828 1869 1.446618 CAGGGCGGAATTGCTTTGC 60.447 57.895 0.00 0.00 34.52 3.68
1950 1991 1.878948 GCACAAAGTAACACCGCCCTA 60.879 52.381 0.00 0.00 0.00 3.53
1975 2016 3.521531 TCCCTAATGATAAGTGCCACACA 59.478 43.478 0.00 0.00 36.74 3.72
2119 2171 2.843730 TCTTATGCCTTCCTGGTTGCTA 59.156 45.455 0.00 0.00 38.35 3.49
2139 2191 5.166398 AGCTGTTCTTTGCTTTGCATTATC 58.834 37.500 0.00 0.00 38.76 1.75
2701 3577 3.444742 CCAATGGCTAATGTGCTGAGAAA 59.555 43.478 0.00 0.00 0.00 2.52
2747 3623 2.727123 TTGGAAAGGAGTTGACAGCA 57.273 45.000 0.00 0.00 0.00 4.41
2748 3624 3.243535 CCTTTTGGAAAGGAGTTGACAGC 60.244 47.826 12.97 0.00 44.07 4.40
2749 3625 4.574599 CCTTTTGGAAAGGAGTTGACAG 57.425 45.455 12.97 0.00 44.07 3.51
2776 3652 2.034124 AGCTCACAAAGTGGTGCAATT 58.966 42.857 14.54 0.00 38.66 2.32
2936 3813 8.343168 TGAGAAAAACACTTTGGAAAGACTTA 57.657 30.769 6.13 0.00 39.31 2.24
2947 3824 8.250332 TGTTAGCTTTGATGAGAAAAACACTTT 58.750 29.630 0.00 0.00 0.00 2.66
3145 4031 0.729116 CAAGTGACCGGCAATGCTAG 59.271 55.000 4.82 0.00 0.00 3.42
3146 4032 0.323302 TCAAGTGACCGGCAATGCTA 59.677 50.000 4.82 0.00 0.00 3.49
3148 4034 0.527565 ATTCAAGTGACCGGCAATGC 59.472 50.000 0.00 0.00 0.00 3.56
3149 4035 3.427503 GGTTATTCAAGTGACCGGCAATG 60.428 47.826 0.00 4.10 0.00 2.82
3150 4036 2.752903 GGTTATTCAAGTGACCGGCAAT 59.247 45.455 0.00 0.00 0.00 3.56
3152 4038 1.349688 AGGTTATTCAAGTGACCGGCA 59.650 47.619 0.00 0.00 37.26 5.69
3154 4040 4.760204 AGAAAAGGTTATTCAAGTGACCGG 59.240 41.667 0.00 0.00 37.26 5.28
3155 4041 5.689819 CAGAAAAGGTTATTCAAGTGACCG 58.310 41.667 0.00 0.00 37.26 4.79
3156 4042 5.461526 GCAGAAAAGGTTATTCAAGTGACC 58.538 41.667 0.00 0.00 0.00 4.02
3157 4043 5.461526 GGCAGAAAAGGTTATTCAAGTGAC 58.538 41.667 0.00 0.00 0.00 3.67
3158 4044 4.522789 GGGCAGAAAAGGTTATTCAAGTGA 59.477 41.667 0.00 0.00 0.00 3.41
3386 4274 7.506938 AGAAAAGGAAGAAGATGTTGGATTCAA 59.493 33.333 0.00 0.00 0.00 2.69
3413 4304 2.231478 GAGATGAGTGGACCGTTCTTGA 59.769 50.000 0.00 0.00 0.00 3.02
3729 4621 1.000274 GGCAATCAGGTTGTGGTGTTC 60.000 52.381 0.00 0.00 40.07 3.18
3811 4703 2.182516 AAGATCGAGGGATTGGAGGT 57.817 50.000 0.00 0.00 31.51 3.85
3845 4737 2.877708 GCTTTGCTCCTAAAGAGTGCCT 60.878 50.000 0.00 0.00 45.21 4.75
3846 4738 1.470494 GCTTTGCTCCTAAAGAGTGCC 59.530 52.381 0.00 0.00 45.21 5.01
3894 4786 0.616395 TCACAGGATGCCCGAAGGTA 60.616 55.000 0.00 0.00 45.09 3.08
3931 4823 8.250143 ACAAGGATAAAGTTTCACCTTTCAAT 57.750 30.769 17.88 6.93 38.65 2.57
4258 5158 3.811722 TTGTCACGCAGATTGATGAAC 57.188 42.857 0.00 0.00 0.00 3.18
4591 5495 9.316730 GTTGATGTATGGATTGCAAATTTGTAT 57.683 29.630 19.03 12.69 0.00 2.29
4775 6418 1.475403 CTCCTCTTCCTTAGGTCGCA 58.525 55.000 0.00 0.00 35.48 5.10
4839 7165 1.616628 GGCTTCCCCTTCTCCCAGA 60.617 63.158 0.00 0.00 0.00 3.86
4841 7167 3.009115 CGGCTTCCCCTTCTCCCA 61.009 66.667 0.00 0.00 0.00 4.37
4950 7283 2.364647 GGATCGAATCGAACCCTACCTT 59.635 50.000 19.40 0.00 41.81 3.50
5053 7386 0.389817 CGTCCCACTTCATCGCTTCA 60.390 55.000 0.00 0.00 0.00 3.02
5059 7392 1.599542 GCATTAGCGTCCCACTTCATC 59.400 52.381 0.00 0.00 0.00 2.92
5060 7393 1.668419 GCATTAGCGTCCCACTTCAT 58.332 50.000 0.00 0.00 0.00 2.57
5061 7394 3.153024 GCATTAGCGTCCCACTTCA 57.847 52.632 0.00 0.00 0.00 3.02
5085 7418 8.892905 GTTATTTAGCGCTAAATTTCTGCATAC 58.107 33.333 43.51 27.70 41.49 2.39
5303 7637 4.387862 CCTGTTACACTAATTCGAAGCGTT 59.612 41.667 3.35 0.00 0.00 4.84
5305 7639 3.241995 GCCTGTTACACTAATTCGAAGCG 60.242 47.826 3.35 0.00 0.00 4.68
5532 7867 2.124122 GGCTACAAAACAACGGCAAAG 58.876 47.619 0.00 0.00 0.00 2.77
5773 8119 7.873719 TTGGAGATTAGTTTCTTGTCAAACA 57.126 32.000 0.00 0.00 38.53 2.83
6104 8450 2.548057 CAGCCAAGCGAGAAGTAACAAA 59.452 45.455 0.00 0.00 0.00 2.83
6370 8717 4.163078 ACGATGATCCATGAAACTCTTCCT 59.837 41.667 0.00 0.00 0.00 3.36
6373 8720 3.624861 GCACGATGATCCATGAAACTCTT 59.375 43.478 0.00 0.00 0.00 2.85
6483 8831 1.499502 GCACTCGCAAGGAAGAAGC 59.500 57.895 0.00 0.00 38.36 3.86
6756 9108 1.034292 GGACCTTGAGGCAAGCATCC 61.034 60.000 4.13 10.83 39.85 3.51
7249 9602 3.725754 CCACCAGTGGCTGTTACTT 57.274 52.632 9.78 0.00 44.73 2.24
7340 9693 7.764695 ATTTGATGATTGTGTACATGCATTG 57.235 32.000 0.00 0.00 0.00 2.82
7376 9729 3.052455 ACATCGAGCACACATTGGTAA 57.948 42.857 0.00 0.00 35.52 2.85
7736 10280 6.590234 AAAAGGTGCTATAAACTTGGGAAG 57.410 37.500 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.