Multiple sequence alignment - TraesCS5B01G298100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G298100 chr5B 100.000 4820 0 0 1 4820 480413628 480418447 0.000000e+00 8901.0
1 TraesCS5B01G298100 chr5B 96.161 1563 55 4 1471 3032 480438423 480439981 0.000000e+00 2549.0
2 TraesCS5B01G298100 chr5B 95.967 1562 60 3 1472 3032 480462198 480463757 0.000000e+00 2532.0
3 TraesCS5B01G298100 chr5B 95.903 1562 54 7 1473 3032 480458190 480459743 0.000000e+00 2521.0
4 TraesCS5B01G298100 chr5B 95.649 1563 58 6 1471 3032 480464213 480465766 0.000000e+00 2501.0
5 TraesCS5B01G298100 chr5B 95.460 1564 61 7 1471 3032 480436417 480437972 0.000000e+00 2486.0
6 TraesCS5B01G298100 chr5B 95.262 1562 64 6 1473 3032 480460199 480461752 0.000000e+00 2466.0
7 TraesCS5B01G298100 chr5B 94.882 1563 77 3 1471 3032 480456175 480457735 0.000000e+00 2440.0
8 TraesCS5B01G298100 chr5B 95.130 1499 70 3 1535 3032 480452493 480453989 0.000000e+00 2361.0
9 TraesCS5B01G298100 chr5B 87.359 443 51 5 4075 4515 462306681 462306242 2.000000e-138 503.0
10 TraesCS5B01G298100 chr5B 87.185 437 50 6 4075 4509 445636374 445635942 4.330000e-135 492.0
11 TraesCS5B01G298100 chr5B 98.182 55 1 0 668 722 480414243 480414297 3.970000e-16 97.1
12 TraesCS5B01G298100 chr5B 98.182 55 1 0 616 670 480414295 480414349 3.970000e-16 97.1
13 TraesCS5B01G298100 chr5D 89.833 3403 267 32 668 4048 400413290 400416635 0.000000e+00 4294.0
14 TraesCS5B01G298100 chr5D 90.276 689 48 5 1 670 400412657 400413345 0.000000e+00 883.0
15 TraesCS5B01G298100 chr5D 96.356 247 8 1 4574 4820 400423674 400423919 5.810000e-109 405.0
16 TraesCS5B01G298100 chr5D 95.951 247 10 0 4574 4820 400420915 400421161 7.510000e-108 401.0
17 TraesCS5B01G298100 chr5D 95.547 247 11 0 4574 4820 400422300 400422546 3.500000e-106 396.0
18 TraesCS5B01G298100 chr5D 95.142 247 12 0 4574 4820 400419540 400419786 1.630000e-104 390.0
19 TraesCS5B01G298100 chr5D 95.436 241 11 0 4574 4814 400425045 400425285 7.570000e-103 385.0
20 TraesCS5B01G298100 chr5D 94.332 247 14 0 4574 4820 400426420 400426666 3.520000e-101 379.0
21 TraesCS5B01G298100 chr5A 89.108 1873 166 20 668 2512 506114618 506116480 0.000000e+00 2294.0
22 TraesCS5B01G298100 chr5A 90.780 1410 95 8 2641 4048 506116538 506117914 0.000000e+00 1851.0
23 TraesCS5B01G298100 chr5A 91.412 687 39 5 1 670 506113990 506114673 0.000000e+00 924.0
24 TraesCS5B01G298100 chr5A 97.436 39 1 0 4498 4536 506117902 506117940 3.110000e-07 67.6
25 TraesCS5B01G298100 chr3D 82.017 1051 144 27 878 1910 572897830 572898853 0.000000e+00 852.0
26 TraesCS5B01G298100 chr3D 80.183 545 91 9 878 1406 572905571 572906114 4.520000e-105 392.0
27 TraesCS5B01G298100 chr3D 76.998 413 79 5 878 1274 572902811 572903223 6.280000e-54 222.0
28 TraesCS5B01G298100 chr3D 79.832 119 23 1 4686 4804 526466533 526466650 8.600000e-13 86.1
29 TraesCS5B01G298100 chr3A 81.382 1042 158 17 889 1913 705419462 705418440 0.000000e+00 817.0
30 TraesCS5B01G298100 chr3A 80.267 674 114 12 878 1532 705407576 705406903 1.560000e-134 490.0
31 TraesCS5B01G298100 chr3A 86.222 450 58 4 4045 4492 727261455 727261902 7.250000e-133 484.0
32 TraesCS5B01G298100 chr3A 78.992 119 24 1 4686 4804 660863344 660863461 4.000000e-11 80.5
33 TraesCS5B01G298100 chr3B 81.481 675 104 8 878 1532 760502023 760501350 7.100000e-148 534.0
34 TraesCS5B01G298100 chr7B 88.889 423 45 2 4076 4497 328829380 328828959 1.990000e-143 520.0
35 TraesCS5B01G298100 chr7B 88.971 136 12 3 4 138 69822463 69822330 1.070000e-36 165.0
36 TraesCS5B01G298100 chr7D 88.605 430 44 5 4071 4497 421452266 421451839 7.150000e-143 518.0
37 TraesCS5B01G298100 chr7D 88.018 434 48 4 4075 4506 564105135 564105566 1.200000e-140 510.0
38 TraesCS5B01G298100 chrUn 86.170 470 59 6 4047 4512 95756224 95755757 2.000000e-138 503.0
39 TraesCS5B01G298100 chrUn 80.183 545 91 9 878 1406 307220451 307220994 4.520000e-105 392.0
40 TraesCS5B01G298100 chr7A 87.529 433 50 4 4075 4505 666577855 666578285 9.320000e-137 497.0
41 TraesCS5B01G298100 chr2D 86.937 444 51 7 4071 4510 498420513 498420073 4.330000e-135 492.0
42 TraesCS5B01G298100 chr6A 87.050 139 16 1 1 139 562816848 562816984 6.460000e-34 156.0
43 TraesCS5B01G298100 chr6A 85.616 146 21 0 1 146 399724761 399724616 2.320000e-33 154.0
44 TraesCS5B01G298100 chr2A 85.621 153 17 5 1 149 57219327 57219478 6.460000e-34 156.0
45 TraesCS5B01G298100 chr6B 86.429 140 16 2 4 143 43808502 43808366 3.010000e-32 150.0
46 TraesCS5B01G298100 chr6B 86.429 140 16 2 4 143 43850153 43850017 3.010000e-32 150.0
47 TraesCS5B01G298100 chr6D 83.544 158 20 6 1 155 101213286 101213132 5.030000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G298100 chr5B 480413628 480418447 4819 False 8901.000000 8901 100.000000 1 4820 1 chr5B.!!$F1 4819
1 TraesCS5B01G298100 chr5B 480436417 480439981 3564 False 2517.500000 2549 95.810500 1471 3032 2 chr5B.!!$F3 1561
2 TraesCS5B01G298100 chr5B 480452493 480465766 13273 False 2470.166667 2532 95.465500 1471 3032 6 chr5B.!!$F4 1561
3 TraesCS5B01G298100 chr5D 400412657 400426666 14009 False 941.625000 4294 94.109125 1 4820 8 chr5D.!!$F1 4819
4 TraesCS5B01G298100 chr5A 506113990 506117940 3950 False 1284.150000 2294 92.184000 1 4536 4 chr5A.!!$F1 4535
5 TraesCS5B01G298100 chr3D 572897830 572906114 8284 False 488.666667 852 79.732667 878 1910 3 chr3D.!!$F2 1032
6 TraesCS5B01G298100 chr3A 705418440 705419462 1022 True 817.000000 817 81.382000 889 1913 1 chr3A.!!$R2 1024
7 TraesCS5B01G298100 chr3A 705406903 705407576 673 True 490.000000 490 80.267000 878 1532 1 chr3A.!!$R1 654
8 TraesCS5B01G298100 chr3B 760501350 760502023 673 True 534.000000 534 81.481000 878 1532 1 chr3B.!!$R1 654
9 TraesCS5B01G298100 chrUn 307220451 307220994 543 False 392.000000 392 80.183000 878 1406 1 chrUn.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 697 0.033405 CCGGACACCTTCCTAGGAGA 60.033 60.0 12.26 2.64 45.05 3.71 F
1034 1071 0.324091 TCCGAGTCTTACACCTCCCC 60.324 60.0 0.00 0.00 0.00 4.81 F
1707 6973 0.326927 CGGCAAACCCCTTCCTTCTA 59.673 55.0 0.00 0.00 0.00 2.10 F
3053 18722 0.459489 AGGAGCTCAACGAGATCTGC 59.541 55.0 17.19 0.00 43.60 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 12261 0.629058 GGGAAAGGTATGGCTCCCAA 59.371 55.000 0.99 0.0 46.00 4.12 R
2852 16512 5.263599 TGGCAACTTCCATCATATTTGAGT 58.736 37.500 0.00 0.0 33.85 3.41 R
3055 18724 3.199071 TGGGGGTATACACTTGATGTCAC 59.801 47.826 4.84 0.0 42.09 3.67 R
4462 20136 0.520404 TCGTTAGTGTCTCGGTCAGC 59.480 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.519808 TGAGAGTGATAGTGTATCTGGGTT 58.480 41.667 0.00 0.00 36.17 4.11
181 183 3.515611 GTGGCGGAACACCAAACA 58.484 55.556 0.00 0.00 44.74 2.83
258 260 9.959749 GTGTTACTTTGTTGGATTATCAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
265 267 9.474920 TTTGTTGGATTATCAGAAAATTCACAC 57.525 29.630 0.00 0.00 0.00 3.82
366 383 7.920682 AGAAGTTTAGCAAAAGGTTAACACATG 59.079 33.333 8.10 0.00 0.00 3.21
403 420 4.438148 ACAAAAGGTTGGTGCATTTGTAC 58.562 39.130 9.89 0.00 41.09 2.90
475 492 1.633561 AGATGACGTCAATCAGCACG 58.366 50.000 24.13 0.00 37.47 5.34
494 511 4.555262 CACGCATGTAATTTTCTTGGGTT 58.445 39.130 8.23 0.00 35.31 4.11
655 674 3.579534 ATGTCGACCCTTAGAGCTCTA 57.420 47.619 19.72 19.72 0.00 2.43
657 676 2.026542 TGTCGACCCTTAGAGCTCTACA 60.027 50.000 23.17 14.63 0.00 2.74
658 677 3.015327 GTCGACCCTTAGAGCTCTACAA 58.985 50.000 23.17 10.77 0.00 2.41
659 678 3.015327 TCGACCCTTAGAGCTCTACAAC 58.985 50.000 23.17 11.56 0.00 3.32
660 679 2.099427 CGACCCTTAGAGCTCTACAACC 59.901 54.545 23.17 10.37 0.00 3.77
661 680 2.099427 GACCCTTAGAGCTCTACAACCG 59.901 54.545 23.17 11.11 0.00 4.44
662 681 1.409427 CCCTTAGAGCTCTACAACCGG 59.591 57.143 23.17 16.36 0.00 5.28
664 683 2.099427 CCTTAGAGCTCTACAACCGGAC 59.901 54.545 23.17 0.00 0.00 4.79
665 684 2.502142 TAGAGCTCTACAACCGGACA 57.498 50.000 19.72 0.00 0.00 4.02
666 685 0.889306 AGAGCTCTACAACCGGACAC 59.111 55.000 16.50 0.00 0.00 3.67
667 686 0.108756 GAGCTCTACAACCGGACACC 60.109 60.000 9.46 0.00 0.00 4.16
670 689 1.672145 GCTCTACAACCGGACACCTTC 60.672 57.143 9.46 0.00 0.00 3.46
671 690 0.971386 TCTACAACCGGACACCTTCC 59.029 55.000 9.46 0.00 41.75 3.46
673 692 2.173519 CTACAACCGGACACCTTCCTA 58.826 52.381 9.46 0.00 43.25 2.94
674 693 0.974383 ACAACCGGACACCTTCCTAG 59.026 55.000 9.46 0.00 43.25 3.02
676 695 0.115745 AACCGGACACCTTCCTAGGA 59.884 55.000 9.46 7.62 45.05 2.94
677 696 0.324460 ACCGGACACCTTCCTAGGAG 60.324 60.000 9.46 3.85 45.05 3.69
678 697 0.033405 CCGGACACCTTCCTAGGAGA 60.033 60.000 12.26 2.64 45.05 3.71
679 698 1.411787 CCGGACACCTTCCTAGGAGAT 60.412 57.143 12.26 0.00 45.05 2.75
680 699 2.158505 CCGGACACCTTCCTAGGAGATA 60.159 54.545 12.26 0.00 45.05 1.98
683 702 5.322754 CGGACACCTTCCTAGGAGATAATA 58.677 45.833 12.26 0.00 45.05 0.98
684 703 5.416326 CGGACACCTTCCTAGGAGATAATAG 59.584 48.000 12.26 5.23 45.05 1.73
686 705 6.783482 GGACACCTTCCTAGGAGATAATAGTT 59.217 42.308 12.26 0.00 45.05 2.24
687 706 7.949006 GGACACCTTCCTAGGAGATAATAGTTA 59.051 40.741 12.26 0.00 45.05 2.24
689 708 9.315363 ACACCTTCCTAGGAGATAATAGTTATG 57.685 37.037 12.26 6.14 45.05 1.90
690 709 9.315363 CACCTTCCTAGGAGATAATAGTTATGT 57.685 37.037 12.26 0.00 45.05 2.29
691 710 9.900112 ACCTTCCTAGGAGATAATAGTTATGTT 57.100 33.333 12.26 0.00 45.05 2.71
695 714 9.310449 TCCTAGGAGATAATAGTTATGTTGACC 57.690 37.037 7.62 0.00 0.00 4.02
696 715 8.532819 CCTAGGAGATAATAGTTATGTTGACCC 58.467 40.741 1.05 0.00 0.00 4.46
698 717 8.568617 AGGAGATAATAGTTATGTTGACCCTT 57.431 34.615 0.00 0.00 0.00 3.95
700 719 9.930693 GGAGATAATAGTTATGTTGACCCTTAG 57.069 37.037 0.00 0.00 0.00 2.18
726 745 5.524971 TCTACAACCGGACACCTTATATG 57.475 43.478 9.46 0.00 0.00 1.78
727 746 2.914059 ACAACCGGACACCTTATATGC 58.086 47.619 9.46 0.00 0.00 3.14
792 811 2.648613 AATTGCCACCCAACCGGACA 62.649 55.000 9.46 0.00 35.99 4.02
855 874 1.862123 GTCAGGACGACGACACGTA 59.138 57.895 0.00 0.00 46.52 3.57
856 875 0.451792 GTCAGGACGACGACACGTAC 60.452 60.000 0.00 8.21 46.52 3.67
862 884 2.285486 GGACGACGACACGTACTATCTG 60.285 54.545 0.00 0.00 46.52 2.90
883 905 2.436646 CACTGTGGCCCATCCGAC 60.437 66.667 0.00 0.00 37.80 4.79
897 919 3.519510 CCATCCGACCCCACATATATTCT 59.480 47.826 0.00 0.00 0.00 2.40
903 925 4.563580 CGACCCCACATATATTCTTCCCTG 60.564 50.000 0.00 0.00 0.00 4.45
947 979 2.040606 GCACTCCACCCTCCCCTA 59.959 66.667 0.00 0.00 0.00 3.53
1034 1071 0.324091 TCCGAGTCTTACACCTCCCC 60.324 60.000 0.00 0.00 0.00 4.81
1051 1091 3.691342 CCGTTGACTGCCGGGAGA 61.691 66.667 31.46 4.83 40.54 3.71
1053 1093 1.079127 CGTTGACTGCCGGGAGATT 60.079 57.895 31.46 8.13 0.00 2.40
1057 1097 1.519455 GACTGCCGGGAGATTGTCG 60.519 63.158 31.46 1.55 0.00 4.35
1060 1100 2.892425 GCCGGGAGATTGTCGCAG 60.892 66.667 2.18 0.00 38.02 5.18
1122 1162 2.751913 CGCACGAGAGGAGTACGCT 61.752 63.158 0.00 0.00 0.00 5.07
1139 1179 2.915659 TGGACAGCGGTCGGACTT 60.916 61.111 10.95 0.00 45.28 3.01
1274 1314 3.438360 CGAAGGTGCTTATCAATTTGGC 58.562 45.455 0.00 0.00 0.00 4.52
1286 1326 7.148590 GCTTATCAATTTGGCACCAACTTAAAG 60.149 37.037 0.45 8.68 35.46 1.85
1292 1332 5.669164 TTGGCACCAACTTAAAGTTTCTT 57.331 34.783 0.00 0.00 36.03 2.52
1411 1457 6.354794 TGCCTTAATTGTGTAGTAGTGAGT 57.645 37.500 0.00 0.00 0.00 3.41
1460 1509 1.251251 AACATGCACTCTTCCCTTGC 58.749 50.000 0.00 0.00 36.76 4.01
1504 6762 6.582672 GTCTCGCCTCAAAAGAAAAATAAAGG 59.417 38.462 0.00 0.00 0.00 3.11
1535 6793 2.829914 GCAATGGAGATGGCGGCA 60.830 61.111 16.34 16.34 0.00 5.69
1555 6813 2.204059 AGCCTGGTCTTGCCTCCT 60.204 61.111 0.00 0.00 38.35 3.69
1707 6973 0.326927 CGGCAAACCCCTTCCTTCTA 59.673 55.000 0.00 0.00 0.00 2.10
1844 8935 2.359230 GAGAACCCAGCTGCGCTT 60.359 61.111 8.66 0.00 36.40 4.68
2610 12261 3.971245 AACATTGTGGGTGTGTTTTGT 57.029 38.095 0.00 0.00 32.53 2.83
2715 12366 3.044235 TCTGACATGCATTCGTCTGTT 57.956 42.857 15.79 0.00 34.01 3.16
2722 12373 4.627467 ACATGCATTCGTCTGTTAGAAGTC 59.373 41.667 0.00 0.00 0.00 3.01
2814 14470 2.238521 GCAGAAGGGAAAATGACACCA 58.761 47.619 0.00 0.00 0.00 4.17
3053 18722 0.459489 AGGAGCTCAACGAGATCTGC 59.541 55.000 17.19 0.00 43.60 4.26
3054 18723 0.529555 GGAGCTCAACGAGATCTGCC 60.530 60.000 17.19 0.00 43.60 4.85
3055 18724 0.869454 GAGCTCAACGAGATCTGCCG 60.869 60.000 9.40 0.07 41.26 5.69
3189 18858 6.036844 GGGTTCTTCGACCATATAGAAACAAC 59.963 42.308 11.35 0.00 41.65 3.32
3236 18905 7.180051 TGGGTCTTATGCCACTTATTTTCAATT 59.820 33.333 0.00 0.00 0.00 2.32
3444 19116 7.340999 AGGTTTATTTAACGCCATGGTTCTATT 59.659 33.333 14.67 3.67 37.64 1.73
3459 19131 7.894753 TGGTTCTATTGATGATTGCCAAATA 57.105 32.000 0.00 0.00 0.00 1.40
3469 19141 9.887629 TTGATGATTGCCAAATATTTTGTATGT 57.112 25.926 0.00 0.00 0.00 2.29
3503 19176 7.645942 AGGCTCTATGAGAGATCAGATCTATT 58.354 38.462 13.26 4.84 45.07 1.73
3506 19179 8.400947 GCTCTATGAGAGATCAGATCTATTCAC 58.599 40.741 21.26 8.12 45.07 3.18
3514 19187 8.306038 AGAGATCAGATCTATTCACTGTATTGC 58.694 37.037 13.26 0.00 40.38 3.56
3551 19224 7.187824 AGAACTGAATATGTTCCAAGCTAGA 57.812 36.000 0.00 0.00 43.28 2.43
3555 19228 8.218338 ACTGAATATGTTCCAAGCTAGAAATG 57.782 34.615 0.00 0.00 33.26 2.32
3564 19238 9.023962 TGTTCCAAGCTAGAAATGACAAATAAT 57.976 29.630 0.00 0.00 0.00 1.28
3634 19308 9.628500 ACTTATTAACCAGTCCTTTTCATATCC 57.372 33.333 0.00 0.00 0.00 2.59
3710 19384 1.836166 CATCACTGGTGGTCCTCATCT 59.164 52.381 0.70 0.00 34.23 2.90
3717 19391 3.221222 GGTCCTCATCTGACCCCG 58.779 66.667 0.00 0.00 45.38 5.73
3796 19470 5.396654 GCAACGAAAGAAGAAGAACATGAAC 59.603 40.000 0.00 0.00 0.00 3.18
3825 19499 8.747538 ACGCAAATATTCCTAGTTAAATTCCT 57.252 30.769 0.00 0.00 0.00 3.36
3846 19520 3.857157 AAAGTTGGGAACTAGCAGACA 57.143 42.857 0.00 0.00 41.91 3.41
3847 19521 2.841442 AGTTGGGAACTAGCAGACAC 57.159 50.000 0.00 0.00 40.69 3.67
3866 19540 2.738521 CGGAACCACCAGCAGTCG 60.739 66.667 0.00 0.00 38.90 4.18
3894 19568 7.393234 TGCACATTGTCTAAGCTATTTTACCTT 59.607 33.333 0.00 0.00 0.00 3.50
3901 19575 8.812972 TGTCTAAGCTATTTTACCTTTGAGAGA 58.187 33.333 0.00 0.00 0.00 3.10
3981 19655 6.654582 GTGGATTTTTATCAGGGCAATTTTGT 59.345 34.615 0.00 0.00 0.00 2.83
3998 19672 5.930837 TTTTGTGTTGTGGATTTCCTCTT 57.069 34.783 0.00 0.00 36.82 2.85
4094 19768 1.402456 CGATTTATCGCTACTCGGGGG 60.402 57.143 0.00 0.00 43.84 5.40
4114 19788 3.335579 GGGTGACCGATAAGATTATGCC 58.664 50.000 0.00 0.00 43.64 4.40
4115 19789 3.008049 GGGTGACCGATAAGATTATGCCT 59.992 47.826 0.00 0.00 43.64 4.75
4116 19790 4.505039 GGGTGACCGATAAGATTATGCCTT 60.505 45.833 0.00 0.00 43.64 4.35
4118 19792 5.057149 GTGACCGATAAGATTATGCCTTGT 58.943 41.667 0.00 0.00 0.00 3.16
4120 19794 5.070446 TGACCGATAAGATTATGCCTTGTCT 59.930 40.000 0.00 0.00 32.02 3.41
4122 19796 5.992217 ACCGATAAGATTATGCCTTGTCTTC 59.008 40.000 0.00 0.00 33.36 2.87
4124 19798 6.073548 CCGATAAGATTATGCCTTGTCTTCAC 60.074 42.308 0.00 0.00 33.36 3.18
4125 19799 6.073548 CGATAAGATTATGCCTTGTCTTCACC 60.074 42.308 0.00 0.00 33.36 4.02
4127 19801 5.121380 AGATTATGCCTTGTCTTCACCAT 57.879 39.130 0.00 0.00 0.00 3.55
4128 19802 5.513233 AGATTATGCCTTGTCTTCACCATT 58.487 37.500 0.00 0.00 0.00 3.16
4129 19803 5.954150 AGATTATGCCTTGTCTTCACCATTT 59.046 36.000 0.00 0.00 0.00 2.32
4130 19804 7.118723 AGATTATGCCTTGTCTTCACCATTTA 58.881 34.615 0.00 0.00 0.00 1.40
4132 19806 5.841957 ATGCCTTGTCTTCACCATTTATC 57.158 39.130 0.00 0.00 0.00 1.75
4133 19807 4.661222 TGCCTTGTCTTCACCATTTATCA 58.339 39.130 0.00 0.00 0.00 2.15
4134 19808 5.263599 TGCCTTGTCTTCACCATTTATCAT 58.736 37.500 0.00 0.00 0.00 2.45
4135 19809 5.716228 TGCCTTGTCTTCACCATTTATCATT 59.284 36.000 0.00 0.00 0.00 2.57
4137 19811 6.532657 GCCTTGTCTTCACCATTTATCATTTG 59.467 38.462 0.00 0.00 0.00 2.32
4138 19812 7.037438 CCTTGTCTTCACCATTTATCATTTGG 58.963 38.462 0.00 0.00 36.56 3.28
4139 19813 6.528537 TGTCTTCACCATTTATCATTTGGG 57.471 37.500 0.00 0.00 34.72 4.12
4140 19814 5.105392 TGTCTTCACCATTTATCATTTGGGC 60.105 40.000 0.00 0.00 34.72 5.36
4144 19818 4.720773 TCACCATTTATCATTTGGGCCAAT 59.279 37.500 21.65 7.64 34.72 3.16
4146 19820 5.887035 CACCATTTATCATTTGGGCCAATTT 59.113 36.000 21.65 8.17 34.72 1.82
4148 19822 7.720515 CACCATTTATCATTTGGGCCAATTTAT 59.279 33.333 21.65 15.42 34.72 1.40
4149 19823 8.943085 ACCATTTATCATTTGGGCCAATTTATA 58.057 29.630 21.65 14.41 34.72 0.98
4150 19824 9.439500 CCATTTATCATTTGGGCCAATTTATAG 57.561 33.333 21.65 4.90 0.00 1.31
4151 19825 8.938906 CATTTATCATTTGGGCCAATTTATAGC 58.061 33.333 21.65 0.00 0.00 2.97
4153 19827 5.789643 TCATTTGGGCCAATTTATAGCTC 57.210 39.130 21.65 0.00 0.00 4.09
4155 19829 5.302568 TCATTTGGGCCAATTTATAGCTCTG 59.697 40.000 21.65 0.00 0.00 3.35
4156 19830 4.518278 TTGGGCCAATTTATAGCTCTGA 57.482 40.909 16.66 0.00 0.00 3.27
4157 19831 3.820557 TGGGCCAATTTATAGCTCTGAC 58.179 45.455 2.13 0.00 0.00 3.51
4158 19832 3.201930 TGGGCCAATTTATAGCTCTGACA 59.798 43.478 2.13 0.00 0.00 3.58
4160 19834 4.276926 GGGCCAATTTATAGCTCTGACAAG 59.723 45.833 4.39 0.00 0.00 3.16
4161 19835 4.261363 GGCCAATTTATAGCTCTGACAAGC 60.261 45.833 0.00 2.52 42.82 4.01
4162 19836 4.336433 GCCAATTTATAGCTCTGACAAGCA 59.664 41.667 0.00 0.00 45.00 3.91
4163 19837 5.163622 GCCAATTTATAGCTCTGACAAGCAA 60.164 40.000 0.00 0.04 45.00 3.91
4164 19838 6.460676 GCCAATTTATAGCTCTGACAAGCAAT 60.461 38.462 0.00 1.86 45.00 3.56
4165 19839 7.486647 CCAATTTATAGCTCTGACAAGCAATT 58.513 34.615 0.00 6.29 45.00 2.32
4166 19840 7.977853 CCAATTTATAGCTCTGACAAGCAATTT 59.022 33.333 0.00 0.68 45.00 1.82
4172 19846 3.242870 GCTCTGACAAGCAATTTATCGGG 60.243 47.826 5.18 0.00 42.05 5.14
4174 19848 4.584874 TCTGACAAGCAATTTATCGGGAA 58.415 39.130 0.00 0.00 0.00 3.97
4175 19849 5.192927 TCTGACAAGCAATTTATCGGGAAT 58.807 37.500 0.00 0.00 0.00 3.01
4176 19850 5.296780 TCTGACAAGCAATTTATCGGGAATC 59.703 40.000 0.00 0.00 0.00 2.52
4177 19851 5.192927 TGACAAGCAATTTATCGGGAATCT 58.807 37.500 0.00 0.00 0.00 2.40
4178 19852 6.353323 TGACAAGCAATTTATCGGGAATCTA 58.647 36.000 0.00 0.00 0.00 1.98
4180 19854 5.531287 ACAAGCAATTTATCGGGAATCTACC 59.469 40.000 0.00 0.00 0.00 3.18
4181 19855 5.304686 AGCAATTTATCGGGAATCTACCA 57.695 39.130 0.00 0.00 0.00 3.25
4182 19856 5.690865 AGCAATTTATCGGGAATCTACCAA 58.309 37.500 0.00 0.00 0.00 3.67
4183 19857 6.306987 AGCAATTTATCGGGAATCTACCAAT 58.693 36.000 0.00 0.00 0.00 3.16
4186 19860 8.573035 GCAATTTATCGGGAATCTACCAATAAA 58.427 33.333 0.00 0.00 35.57 1.40
4193 19867 4.546570 GGAATCTACCAATAAATTGCGCC 58.453 43.478 4.18 0.00 36.48 6.53
4194 19868 4.278419 GGAATCTACCAATAAATTGCGCCT 59.722 41.667 4.18 0.00 36.48 5.52
4195 19869 5.472137 GGAATCTACCAATAAATTGCGCCTA 59.528 40.000 4.18 0.00 36.48 3.93
4196 19870 6.151144 GGAATCTACCAATAAATTGCGCCTAT 59.849 38.462 4.18 0.00 36.48 2.57
4197 19871 7.309194 GGAATCTACCAATAAATTGCGCCTATT 60.309 37.037 4.18 1.33 36.48 1.73
4200 19874 5.789643 ACCAATAAATTGCGCCTATTCAT 57.210 34.783 4.18 0.00 36.48 2.57
4201 19875 6.892658 ACCAATAAATTGCGCCTATTCATA 57.107 33.333 4.18 0.00 36.48 2.15
4202 19876 6.913170 ACCAATAAATTGCGCCTATTCATAG 58.087 36.000 4.18 0.00 36.48 2.23
4203 19877 5.801947 CCAATAAATTGCGCCTATTCATAGC 59.198 40.000 4.18 0.00 36.48 2.97
4204 19878 6.380995 CAATAAATTGCGCCTATTCATAGCA 58.619 36.000 4.18 0.00 35.90 3.49
4205 19879 3.904136 AATTGCGCCTATTCATAGCAC 57.096 42.857 4.18 0.00 37.57 4.40
4206 19880 2.620251 TTGCGCCTATTCATAGCACT 57.380 45.000 4.18 0.00 37.57 4.40
4207 19881 3.744238 TTGCGCCTATTCATAGCACTA 57.256 42.857 4.18 0.00 37.57 2.74
4208 19882 3.961480 TGCGCCTATTCATAGCACTAT 57.039 42.857 4.18 0.00 32.43 2.12
4209 19883 3.588955 TGCGCCTATTCATAGCACTATG 58.411 45.455 4.18 10.79 43.16 2.23
4210 19884 3.006859 TGCGCCTATTCATAGCACTATGT 59.993 43.478 15.44 2.61 42.57 2.29
4211 19885 3.997021 GCGCCTATTCATAGCACTATGTT 59.003 43.478 15.44 8.61 42.57 2.71
4212 19886 4.452455 GCGCCTATTCATAGCACTATGTTT 59.548 41.667 15.44 8.33 42.57 2.83
4213 19887 5.615544 GCGCCTATTCATAGCACTATGTTTG 60.616 44.000 15.44 7.37 42.57 2.93
4214 19888 5.615544 CGCCTATTCATAGCACTATGTTTGC 60.616 44.000 15.44 11.52 42.57 3.68
4215 19889 5.239306 GCCTATTCATAGCACTATGTTTGCA 59.761 40.000 15.44 0.00 42.83 4.08
4218 19892 5.956068 TTCATAGCACTATGTTTGCACAA 57.044 34.783 15.44 0.89 42.83 3.33
4245 19919 9.174166 ACTATATATCTTTGTGTTTTGTGGACC 57.826 33.333 0.00 0.00 0.00 4.46
4246 19920 9.396022 CTATATATCTTTGTGTTTTGTGGACCT 57.604 33.333 0.00 0.00 0.00 3.85
4248 19922 4.448537 TCTTTGTGTTTTGTGGACCTTG 57.551 40.909 0.00 0.00 0.00 3.61
4251 19925 5.477291 TCTTTGTGTTTTGTGGACCTTGTTA 59.523 36.000 0.00 0.00 0.00 2.41
4252 19926 4.705337 TGTGTTTTGTGGACCTTGTTAC 57.295 40.909 0.00 0.00 0.00 2.50
4253 19927 4.079970 TGTGTTTTGTGGACCTTGTTACA 58.920 39.130 0.00 0.00 0.00 2.41
4255 19929 5.886474 TGTGTTTTGTGGACCTTGTTACATA 59.114 36.000 0.00 0.00 0.00 2.29
4256 19930 6.377429 TGTGTTTTGTGGACCTTGTTACATAA 59.623 34.615 0.00 0.00 0.00 1.90
4257 19931 7.068839 TGTGTTTTGTGGACCTTGTTACATAAT 59.931 33.333 0.00 0.00 0.00 1.28
4259 19933 9.303116 TGTTTTGTGGACCTTGTTACATAATAT 57.697 29.630 0.00 0.00 0.00 1.28
4262 19936 9.961264 TTTGTGGACCTTGTTACATAATATGTA 57.039 29.630 8.90 8.90 44.38 2.29
4285 19959 8.687242 TGTAATGTTGTCCTATTTTGTTTGTCA 58.313 29.630 0.00 0.00 0.00 3.58
4293 19967 9.438228 TGTCCTATTTTGTTTGTCATTATACGA 57.562 29.630 0.00 0.00 0.00 3.43
4294 19968 9.916397 GTCCTATTTTGTTTGTCATTATACGAG 57.084 33.333 0.00 0.00 0.00 4.18
4295 19969 9.104965 TCCTATTTTGTTTGTCATTATACGAGG 57.895 33.333 0.00 0.00 0.00 4.63
4296 19970 9.104965 CCTATTTTGTTTGTCATTATACGAGGA 57.895 33.333 0.00 0.00 0.00 3.71
4301 19975 8.554835 TTGTTTGTCATTATACGAGGATTCAA 57.445 30.769 0.00 0.00 0.00 2.69
4303 19977 8.664798 TGTTTGTCATTATACGAGGATTCAAAG 58.335 33.333 0.00 0.00 0.00 2.77
4304 19978 7.786178 TTGTCATTATACGAGGATTCAAAGG 57.214 36.000 0.00 0.00 0.00 3.11
4305 19979 5.758296 TGTCATTATACGAGGATTCAAAGGC 59.242 40.000 0.00 0.00 0.00 4.35
4307 19981 7.152645 GTCATTATACGAGGATTCAAAGGCTA 58.847 38.462 0.00 0.00 0.00 3.93
4308 19982 7.329717 GTCATTATACGAGGATTCAAAGGCTAG 59.670 40.741 0.00 0.00 0.00 3.42
4309 19983 2.990066 ACGAGGATTCAAAGGCTAGG 57.010 50.000 0.00 0.00 0.00 3.02
4310 19984 2.467880 ACGAGGATTCAAAGGCTAGGA 58.532 47.619 0.00 0.00 0.00 2.94
4311 19985 2.838202 ACGAGGATTCAAAGGCTAGGAA 59.162 45.455 3.61 3.61 0.00 3.36
4313 19987 4.061596 CGAGGATTCAAAGGCTAGGAATC 58.938 47.826 22.92 22.92 43.79 2.52
4314 19988 4.443457 CGAGGATTCAAAGGCTAGGAATCA 60.443 45.833 27.89 3.13 45.42 2.57
4315 19989 5.440610 GAGGATTCAAAGGCTAGGAATCAA 58.559 41.667 27.89 2.85 45.42 2.57
4316 19990 6.023334 AGGATTCAAAGGCTAGGAATCAAT 57.977 37.500 27.89 19.08 45.42 2.57
4317 19991 5.832060 AGGATTCAAAGGCTAGGAATCAATG 59.168 40.000 27.89 4.85 45.42 2.82
4318 19992 5.595952 GGATTCAAAGGCTAGGAATCAATGT 59.404 40.000 27.89 6.42 45.42 2.71
4320 19994 7.285401 GGATTCAAAGGCTAGGAATCAATGTAA 59.715 37.037 27.89 0.30 45.42 2.41
4324 19998 5.700402 AGGCTAGGAATCAATGTAACACT 57.300 39.130 0.00 0.00 0.00 3.55
4325 19999 6.067217 AGGCTAGGAATCAATGTAACACTT 57.933 37.500 0.00 0.00 0.00 3.16
4326 20000 6.116126 AGGCTAGGAATCAATGTAACACTTC 58.884 40.000 0.00 0.00 0.00 3.01
4327 20001 6.069963 AGGCTAGGAATCAATGTAACACTTCT 60.070 38.462 0.00 0.00 0.00 2.85
4329 20003 6.595716 GCTAGGAATCAATGTAACACTTCTGT 59.404 38.462 0.00 0.00 0.00 3.41
4330 20004 7.764443 GCTAGGAATCAATGTAACACTTCTGTA 59.236 37.037 0.00 0.00 0.00 2.74
4331 20005 7.907214 AGGAATCAATGTAACACTTCTGTAC 57.093 36.000 0.00 0.00 0.00 2.90
4332 20006 7.450074 AGGAATCAATGTAACACTTCTGTACA 58.550 34.615 0.00 0.00 0.00 2.90
4343 20017 9.607285 GTAACACTTCTGTACAATATTGTTTGG 57.393 33.333 25.31 14.94 42.35 3.28
4345 20019 7.648142 ACACTTCTGTACAATATTGTTTGGTG 58.352 34.615 25.31 22.59 42.35 4.17
4348 20022 8.134895 ACTTCTGTACAATATTGTTTGGTGTTG 58.865 33.333 25.31 11.86 42.35 3.33
4349 20023 7.809546 TCTGTACAATATTGTTTGGTGTTGA 57.190 32.000 25.31 10.33 42.35 3.18
4350 20024 8.226819 TCTGTACAATATTGTTTGGTGTTGAA 57.773 30.769 25.31 1.45 42.35 2.69
4351 20025 8.855110 TCTGTACAATATTGTTTGGTGTTGAAT 58.145 29.630 25.31 0.00 42.35 2.57
4356 20030 9.801873 ACAATATTGTTTGGTGTTGAATATAGC 57.198 29.630 15.47 0.00 38.47 2.97
4357 20031 9.800433 CAATATTGTTTGGTGTTGAATATAGCA 57.200 29.630 7.32 0.00 0.00 3.49
4414 20088 5.767816 AAATGGTTGATTAATAGCCGTCC 57.232 39.130 0.00 0.00 0.00 4.79
4415 20089 2.828877 TGGTTGATTAATAGCCGTCCG 58.171 47.619 0.00 0.00 0.00 4.79
4418 20092 4.281435 TGGTTGATTAATAGCCGTCCGATA 59.719 41.667 0.00 0.00 0.00 2.92
4419 20093 5.221481 TGGTTGATTAATAGCCGTCCGATAA 60.221 40.000 0.00 0.00 0.00 1.75
4420 20094 5.697633 GGTTGATTAATAGCCGTCCGATAAA 59.302 40.000 0.00 0.00 0.00 1.40
4421 20095 6.203338 GGTTGATTAATAGCCGTCCGATAAAA 59.797 38.462 0.00 0.00 0.00 1.52
4422 20096 7.094933 GGTTGATTAATAGCCGTCCGATAAAAT 60.095 37.037 0.00 0.00 0.00 1.82
4423 20097 7.591006 TGATTAATAGCCGTCCGATAAAATC 57.409 36.000 0.00 0.00 0.00 2.17
4425 20099 7.658167 TGATTAATAGCCGTCCGATAAAATCAA 59.342 33.333 0.00 0.00 29.42 2.57
4427 20101 6.877611 AATAGCCGTCCGATAAAATCAATT 57.122 33.333 0.00 0.00 0.00 2.32
4429 20103 7.972832 ATAGCCGTCCGATAAAATCAATTAA 57.027 32.000 0.00 0.00 0.00 1.40
4430 20104 6.877611 AGCCGTCCGATAAAATCAATTAAT 57.122 33.333 0.00 0.00 0.00 1.40
4432 20106 8.385898 AGCCGTCCGATAAAATCAATTAATTA 57.614 30.769 0.00 0.00 0.00 1.40
4433 20107 8.842280 AGCCGTCCGATAAAATCAATTAATTAA 58.158 29.630 0.00 0.00 0.00 1.40
4460 20134 9.193133 TCGATTTCCGATTAATCTCTAATTCAC 57.807 33.333 13.45 0.00 43.23 3.18
4463 20137 7.715265 TTCCGATTAATCTCTAATTCACAGC 57.285 36.000 13.45 0.00 0.00 4.40
4464 20138 7.055667 TCCGATTAATCTCTAATTCACAGCT 57.944 36.000 13.45 0.00 0.00 4.24
4465 20139 6.925718 TCCGATTAATCTCTAATTCACAGCTG 59.074 38.462 13.48 13.48 0.00 4.24
4466 20140 6.925718 CCGATTAATCTCTAATTCACAGCTGA 59.074 38.462 23.35 0.00 0.00 4.26
4467 20141 7.095857 CCGATTAATCTCTAATTCACAGCTGAC 60.096 40.741 23.35 0.00 0.00 3.51
4468 20142 7.095857 CGATTAATCTCTAATTCACAGCTGACC 60.096 40.741 23.35 0.00 0.00 4.02
4469 20143 3.510388 TCTCTAATTCACAGCTGACCG 57.490 47.619 23.35 8.50 0.00 4.79
4470 20144 3.089284 TCTCTAATTCACAGCTGACCGA 58.911 45.455 23.35 10.93 0.00 4.69
4471 20145 3.129462 TCTCTAATTCACAGCTGACCGAG 59.871 47.826 23.35 14.46 0.00 4.63
4472 20146 3.089284 TCTAATTCACAGCTGACCGAGA 58.911 45.455 23.35 11.68 0.00 4.04
4473 20147 2.086054 AATTCACAGCTGACCGAGAC 57.914 50.000 23.35 0.00 0.00 3.36
4474 20148 0.969149 ATTCACAGCTGACCGAGACA 59.031 50.000 23.35 0.00 0.00 3.41
4475 20149 0.032130 TTCACAGCTGACCGAGACAC 59.968 55.000 23.35 0.00 0.00 3.67
4476 20150 0.823769 TCACAGCTGACCGAGACACT 60.824 55.000 23.35 0.00 0.00 3.55
4477 20151 0.881796 CACAGCTGACCGAGACACTA 59.118 55.000 23.35 0.00 0.00 2.74
4479 20153 1.269998 ACAGCTGACCGAGACACTAAC 59.730 52.381 23.35 0.00 0.00 2.34
4480 20154 0.522180 AGCTGACCGAGACACTAACG 59.478 55.000 0.00 0.00 0.00 3.18
4481 20155 0.520404 GCTGACCGAGACACTAACGA 59.480 55.000 0.00 0.00 0.00 3.85
4482 20156 1.132643 GCTGACCGAGACACTAACGAT 59.867 52.381 0.00 0.00 0.00 3.73
4483 20157 2.353889 GCTGACCGAGACACTAACGATA 59.646 50.000 0.00 0.00 0.00 2.92
4484 20158 3.181503 GCTGACCGAGACACTAACGATAA 60.182 47.826 0.00 0.00 0.00 1.75
4485 20159 4.589252 CTGACCGAGACACTAACGATAAG 58.411 47.826 0.00 0.00 0.00 1.73
4486 20160 3.181503 TGACCGAGACACTAACGATAAGC 60.182 47.826 0.00 0.00 0.00 3.09
4487 20161 2.098770 ACCGAGACACTAACGATAAGCC 59.901 50.000 0.00 0.00 0.00 4.35
4488 20162 2.098607 CCGAGACACTAACGATAAGCCA 59.901 50.000 0.00 0.00 0.00 4.75
4489 20163 3.243434 CCGAGACACTAACGATAAGCCAT 60.243 47.826 0.00 0.00 0.00 4.40
4490 20164 4.023450 CCGAGACACTAACGATAAGCCATA 60.023 45.833 0.00 0.00 0.00 2.74
4491 20165 5.335740 CCGAGACACTAACGATAAGCCATAT 60.336 44.000 0.00 0.00 0.00 1.78
4492 20166 5.795939 CGAGACACTAACGATAAGCCATATC 59.204 44.000 0.00 0.00 37.61 1.63
4493 20167 6.026947 AGACACTAACGATAAGCCATATCC 57.973 41.667 0.00 0.00 37.68 2.59
4498 20528 7.396339 ACACTAACGATAAGCCATATCCTCATA 59.604 37.037 0.00 0.00 37.68 2.15
4501 20531 9.254133 CTAACGATAAGCCATATCCTCATATTG 57.746 37.037 0.00 0.00 37.68 1.90
4502 20532 7.423844 ACGATAAGCCATATCCTCATATTGA 57.576 36.000 0.00 0.00 37.68 2.57
4505 20535 9.334947 CGATAAGCCATATCCTCATATTGATTT 57.665 33.333 2.47 0.00 37.68 2.17
4604 22657 9.665264 ATTCGTTCAAAAATAGTTGAAGTTCTC 57.335 29.630 4.17 0.00 45.65 2.87
4623 22676 6.373495 AGTTCTCGTTGTCCAAAGTTAAACTT 59.627 34.615 0.00 0.00 40.80 2.66
4629 22682 8.675504 TCGTTGTCCAAAGTTAAACTTATTTGA 58.324 29.630 0.00 0.00 37.47 2.69
4724 26910 8.154856 TGGGTATTTGATATTGTAGGTCTTAGC 58.845 37.037 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.336929 GGCCATGATCATATTTTGCTGCATA 60.337 40.000 8.15 0.00 0.00 3.14
106 107 2.494073 GGACCCGTGCATTTTAATGGAA 59.506 45.455 4.76 0.00 38.50 3.53
110 111 4.565022 CAAAAGGACCCGTGCATTTTAAT 58.435 39.130 0.00 0.00 0.00 1.40
112 113 2.288518 GCAAAAGGACCCGTGCATTTTA 60.289 45.455 6.74 0.00 36.97 1.52
113 114 1.540146 GCAAAAGGACCCGTGCATTTT 60.540 47.619 6.74 0.00 36.97 1.82
115 116 0.827507 AGCAAAAGGACCCGTGCATT 60.828 50.000 12.69 0.00 39.50 3.56
117 118 0.605319 CTAGCAAAAGGACCCGTGCA 60.605 55.000 12.69 0.00 39.50 4.57
181 183 8.952278 TGTATTTAGAAAATAATGACGGCAAGT 58.048 29.630 0.00 0.00 0.00 3.16
258 260 6.515272 ACAACTCAAAACTCAAGTGTGAAT 57.485 33.333 0.22 0.00 31.88 2.57
295 297 9.726034 GATAAATGTAGCAAAAATGACGTTTTG 57.274 29.630 6.15 7.75 46.62 2.44
366 383 4.509970 ACCTTTTGTTAAAGAAATTGCGGC 59.490 37.500 0.00 0.00 42.78 6.53
475 492 5.146010 TCCAACCCAAGAAAATTACATGC 57.854 39.130 0.00 0.00 0.00 4.06
556 573 7.436430 TGGACTATACTGTCATAGACGAATC 57.564 40.000 0.00 0.00 38.61 2.52
662 681 7.842887 AACTATTATCTCCTAGGAAGGTGTC 57.157 40.000 13.77 0.00 44.09 3.67
664 683 9.315363 ACATAACTATTATCTCCTAGGAAGGTG 57.685 37.037 13.77 9.14 44.09 4.00
665 684 9.900112 AACATAACTATTATCTCCTAGGAAGGT 57.100 33.333 13.77 7.31 44.09 3.50
670 689 8.532819 GGGTCAACATAACTATTATCTCCTAGG 58.467 40.741 0.82 0.82 0.00 3.02
671 690 9.315363 AGGGTCAACATAACTATTATCTCCTAG 57.685 37.037 0.00 0.00 0.00 3.02
673 692 8.568617 AAGGGTCAACATAACTATTATCTCCT 57.431 34.615 0.00 0.00 0.00 3.69
674 693 9.930693 CTAAGGGTCAACATAACTATTATCTCC 57.069 37.037 0.00 0.00 0.00 3.71
677 696 9.425577 GCTCTAAGGGTCAACATAACTATTATC 57.574 37.037 0.00 0.00 0.00 1.75
678 697 9.160412 AGCTCTAAGGGTCAACATAACTATTAT 57.840 33.333 0.00 0.00 0.00 1.28
679 698 8.548880 AGCTCTAAGGGTCAACATAACTATTA 57.451 34.615 0.00 0.00 0.00 0.98
680 699 7.345914 AGAGCTCTAAGGGTCAACATAACTATT 59.654 37.037 16.50 0.00 36.33 1.73
683 702 5.026790 AGAGCTCTAAGGGTCAACATAACT 58.973 41.667 16.50 0.00 36.33 2.24
684 703 5.346181 AGAGCTCTAAGGGTCAACATAAC 57.654 43.478 16.50 0.00 36.33 1.89
686 705 5.516044 TGTAGAGCTCTAAGGGTCAACATA 58.484 41.667 24.85 0.00 36.33 2.29
687 706 4.353777 TGTAGAGCTCTAAGGGTCAACAT 58.646 43.478 24.85 0.00 36.33 2.71
689 708 4.496360 GTTGTAGAGCTCTAAGGGTCAAC 58.504 47.826 25.83 25.83 36.33 3.18
690 709 3.514309 GGTTGTAGAGCTCTAAGGGTCAA 59.486 47.826 24.85 19.65 36.33 3.18
691 710 3.097614 GGTTGTAGAGCTCTAAGGGTCA 58.902 50.000 24.85 15.05 36.33 4.02
692 711 2.099427 CGGTTGTAGAGCTCTAAGGGTC 59.901 54.545 24.85 12.61 0.00 4.46
693 712 2.100989 CGGTTGTAGAGCTCTAAGGGT 58.899 52.381 24.85 0.00 0.00 4.34
694 713 1.409427 CCGGTTGTAGAGCTCTAAGGG 59.591 57.143 24.85 16.34 0.00 3.95
695 714 2.099427 GTCCGGTTGTAGAGCTCTAAGG 59.901 54.545 24.85 20.25 0.00 2.69
696 715 2.753452 TGTCCGGTTGTAGAGCTCTAAG 59.247 50.000 24.85 13.18 0.00 2.18
698 717 2.089980 GTGTCCGGTTGTAGAGCTCTA 58.910 52.381 19.72 19.72 0.00 2.43
700 719 0.108756 GGTGTCCGGTTGTAGAGCTC 60.109 60.000 5.27 5.27 0.00 4.09
701 720 0.542232 AGGTGTCCGGTTGTAGAGCT 60.542 55.000 0.00 0.00 0.00 4.09
702 721 0.320697 AAGGTGTCCGGTTGTAGAGC 59.679 55.000 0.00 0.00 0.00 4.09
726 745 1.576421 CTCCAGAAGTTTGGCACGC 59.424 57.895 0.00 0.00 38.16 5.34
727 746 1.237285 CCCTCCAGAAGTTTGGCACG 61.237 60.000 0.00 0.00 38.16 5.34
778 797 3.546714 GAGGTGTCCGGTTGGGTGG 62.547 68.421 0.00 0.00 37.00 4.61
792 811 2.837031 ATTTGGGCCGAATGCGAGGT 62.837 55.000 18.41 0.00 42.61 3.85
798 817 0.661020 GGACGTATTTGGGCCGAATG 59.339 55.000 26.28 14.46 0.00 2.67
845 864 1.268437 GGCCAGATAGTACGTGTCGTC 60.268 57.143 0.00 0.00 41.54 4.20
846 865 0.737219 GGCCAGATAGTACGTGTCGT 59.263 55.000 0.00 0.00 44.35 4.34
847 866 0.030369 GGGCCAGATAGTACGTGTCG 59.970 60.000 4.39 0.00 0.00 4.35
848 867 1.108776 TGGGCCAGATAGTACGTGTC 58.891 55.000 0.00 0.00 0.00 3.67
849 868 0.822164 GTGGGCCAGATAGTACGTGT 59.178 55.000 6.40 0.00 0.00 4.49
853 872 1.139058 CCACAGTGGGCCAGATAGTAC 59.861 57.143 6.40 0.00 32.67 2.73
855 874 2.300996 CCACAGTGGGCCAGATAGT 58.699 57.895 6.40 0.00 32.67 2.12
883 905 5.324832 AACAGGGAAGAATATATGTGGGG 57.675 43.478 0.00 0.00 0.00 4.96
897 919 1.228124 CCGGAGTGCAAACAGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
903 925 1.068541 GGTTTCATCCGGAGTGCAAAC 60.069 52.381 11.34 14.74 0.00 2.93
947 979 0.178947 TTTTGGGCGGAGGGAAATGT 60.179 50.000 0.00 0.00 0.00 2.71
1012 1049 2.657143 GGAGGTGTAAGACTCGGATCT 58.343 52.381 0.00 0.00 34.58 2.75
1057 1097 4.785453 CTCCTTGGGGTCGCCTGC 62.785 72.222 7.55 0.00 0.00 4.85
1060 1100 3.787001 CTCCTCCTTGGGGTCGCC 61.787 72.222 0.00 0.00 36.20 5.54
1105 1145 1.226435 CAGCGTACTCCTCTCGTGC 60.226 63.158 0.00 0.00 0.00 5.34
1122 1162 2.915659 AAGTCCGACCGCTGTCCA 60.916 61.111 2.40 0.00 38.32 4.02
1139 1179 2.653726 CAATGGATTTCGGGTGGATGA 58.346 47.619 0.00 0.00 0.00 2.92
1146 1186 1.727467 GGACGCAATGGATTTCGGG 59.273 57.895 0.00 0.00 0.00 5.14
1150 1190 2.760159 CGGCGGACGCAATGGATTT 61.760 57.895 18.95 0.00 44.11 2.17
1229 1269 1.080093 GTGTTCGGACGCCAGATGA 60.080 57.895 0.00 0.00 0.00 2.92
1274 1314 9.849166 TCTGTTTAAAGAAACTTTAAGTTGGTG 57.151 29.630 11.35 6.23 44.52 4.17
1286 1326 6.015688 CCCCCTAACCTTCTGTTTAAAGAAAC 60.016 42.308 0.00 0.00 44.48 2.78
1349 1394 8.788325 AACCCAGTAAACTAATACATCTTGTC 57.212 34.615 0.00 0.00 0.00 3.18
1369 1414 2.883026 CAACCCACCATCTTTAACCCA 58.117 47.619 0.00 0.00 0.00 4.51
1411 1457 1.009078 CTCCAAAATGCGCATCGAGA 58.991 50.000 25.53 16.47 0.00 4.04
1474 1525 1.416401 TCTTTTGAGGCGAGACCAAGT 59.584 47.619 0.00 0.00 43.14 3.16
1504 6762 6.683974 TCTCCATTGCTTAGCTAACATTTC 57.316 37.500 5.60 0.00 0.00 2.17
1520 6778 2.517875 GCTGCCGCCATCTCCATT 60.518 61.111 0.00 0.00 0.00 3.16
1535 6793 3.255397 AGGCAAGACCAGGCTGCT 61.255 61.111 9.56 0.00 43.14 4.24
1555 6813 1.752198 CCTTCTCCACCACCGAACA 59.248 57.895 0.00 0.00 0.00 3.18
1647 6913 2.373338 ATCCCTAGGCTCGGCTGCTA 62.373 60.000 2.05 0.00 0.00 3.49
1707 6973 3.438781 TGAAAAGACGAGCACACAAACTT 59.561 39.130 0.00 0.00 0.00 2.66
1844 8935 7.038729 TGGTTGCATCATTTAGGAAATGGTTTA 60.039 33.333 11.06 0.00 46.40 2.01
2610 12261 0.629058 GGGAAAGGTATGGCTCCCAA 59.371 55.000 0.99 0.00 46.00 4.12
2814 14470 7.500141 ACTTTTCCATTATTGTCAGCACTTTT 58.500 30.769 0.00 0.00 0.00 2.27
2824 16484 9.197306 GGTTCCCTTATACTTTTCCATTATTGT 57.803 33.333 0.00 0.00 0.00 2.71
2852 16512 5.263599 TGGCAACTTCCATCATATTTGAGT 58.736 37.500 0.00 0.00 33.85 3.41
3053 18722 3.454375 GGGTATACACTTGATGTCACGG 58.546 50.000 5.01 0.00 42.09 4.94
3054 18723 3.454375 GGGGTATACACTTGATGTCACG 58.546 50.000 4.84 0.00 42.09 4.35
3055 18724 3.199071 TGGGGGTATACACTTGATGTCAC 59.801 47.826 4.84 0.00 42.09 3.67
3198 18867 6.610830 TGGCATAAGACCCATTTGTATGAAAT 59.389 34.615 0.00 0.00 33.37 2.17
3312 18981 9.383519 CTCTTTTTCTTAGGCATGATTAGTGTA 57.616 33.333 0.00 0.00 0.00 2.90
3378 19047 7.200455 GCACAAACTAGTGGTTGTCTATTTTT 58.800 34.615 9.51 0.00 39.87 1.94
3379 19048 6.735130 GCACAAACTAGTGGTTGTCTATTTT 58.265 36.000 9.51 0.00 39.87 1.82
3380 19049 6.313744 GCACAAACTAGTGGTTGTCTATTT 57.686 37.500 9.51 0.00 39.87 1.40
3381 19050 5.941948 GCACAAACTAGTGGTTGTCTATT 57.058 39.130 9.51 0.00 39.87 1.73
3390 19059 6.985188 ATACAACATAGCACAAACTAGTGG 57.015 37.500 0.00 0.00 39.87 4.00
3391 19060 7.806690 ACAATACAACATAGCACAAACTAGTG 58.193 34.615 0.00 0.00 42.37 2.74
3392 19061 7.979444 ACAATACAACATAGCACAAACTAGT 57.021 32.000 0.00 0.00 0.00 2.57
3393 19062 9.973246 CTAACAATACAACATAGCACAAACTAG 57.027 33.333 0.00 0.00 0.00 2.57
3394 19063 8.941977 CCTAACAATACAACATAGCACAAACTA 58.058 33.333 0.00 0.00 0.00 2.24
3395 19064 7.447238 ACCTAACAATACAACATAGCACAAACT 59.553 33.333 0.00 0.00 0.00 2.66
3459 19131 6.074698 AGCCTACAAGGGTACATACAAAAT 57.925 37.500 0.00 0.00 45.76 1.82
3471 19143 3.838565 TCTCTCATAGAGCCTACAAGGG 58.161 50.000 0.00 0.00 42.04 3.95
3503 19176 5.929415 TCGACAACTAATTGCAATACAGTGA 59.071 36.000 21.15 13.83 39.66 3.41
3506 19179 6.647212 TCTCGACAACTAATTGCAATACAG 57.353 37.500 13.39 14.91 39.66 2.74
3514 19187 8.873830 ACATATTCAGTTCTCGACAACTAATTG 58.126 33.333 5.72 9.37 41.98 2.32
3717 19391 2.440980 GAGCACCTTGCCCCATCC 60.441 66.667 0.00 0.00 46.52 3.51
3764 19438 2.290641 TCTTCTTTCGTTGCCTTCTTGC 59.709 45.455 0.00 0.00 0.00 4.01
3775 19449 6.483307 TCATGTTCATGTTCTTCTTCTTTCGT 59.517 34.615 11.73 0.00 0.00 3.85
3778 19452 6.662616 CGTCATGTTCATGTTCTTCTTCTTT 58.337 36.000 11.73 0.00 0.00 2.52
3796 19470 9.950680 AATTTAACTAGGAATATTTGCGTCATG 57.049 29.630 0.00 0.00 0.00 3.07
3825 19499 4.504340 GGTGTCTGCTAGTTCCCAACTTTA 60.504 45.833 0.00 0.00 42.81 1.85
3846 19520 3.953775 CTGCTGGTGGTTCCGGGT 61.954 66.667 0.00 0.00 42.62 5.28
3847 19521 3.901797 GACTGCTGGTGGTTCCGGG 62.902 68.421 0.00 0.00 42.62 5.73
3866 19540 7.484959 GGTAAAATAGCTTAGACAATGTGCAAC 59.515 37.037 0.00 0.00 37.35 4.17
3894 19568 4.883083 ACTAAAGCAACACGATCTCTCAA 58.117 39.130 0.00 0.00 0.00 3.02
3901 19575 5.065988 ACTCAAACAACTAAAGCAACACGAT 59.934 36.000 0.00 0.00 0.00 3.73
3981 19655 4.097741 CACAACAAGAGGAAATCCACAACA 59.902 41.667 1.67 0.00 38.89 3.33
3998 19672 3.838120 TGTCGCAAAATTGTTCACAACA 58.162 36.364 0.00 0.00 38.86 3.33
4091 19765 3.868754 GCATAATCTTATCGGTCACCCCC 60.869 52.174 0.00 0.00 0.00 5.40
4092 19766 3.335579 GCATAATCTTATCGGTCACCCC 58.664 50.000 0.00 0.00 0.00 4.95
4094 19768 4.273148 AGGCATAATCTTATCGGTCACC 57.727 45.455 0.00 0.00 0.00 4.02
4095 19769 5.057149 ACAAGGCATAATCTTATCGGTCAC 58.943 41.667 0.00 0.00 0.00 3.67
4096 19770 5.070446 AGACAAGGCATAATCTTATCGGTCA 59.930 40.000 0.00 0.00 0.00 4.02
4097 19771 5.542779 AGACAAGGCATAATCTTATCGGTC 58.457 41.667 0.00 0.00 0.00 4.79
4098 19772 5.552870 AGACAAGGCATAATCTTATCGGT 57.447 39.130 0.00 0.00 0.00 4.69
4099 19773 5.991606 TGAAGACAAGGCATAATCTTATCGG 59.008 40.000 0.00 0.00 31.58 4.18
4101 19775 6.767902 TGGTGAAGACAAGGCATAATCTTATC 59.232 38.462 0.00 0.00 31.58 1.75
4102 19776 6.662755 TGGTGAAGACAAGGCATAATCTTAT 58.337 36.000 0.00 0.00 31.58 1.73
4103 19777 6.061022 TGGTGAAGACAAGGCATAATCTTA 57.939 37.500 0.00 0.00 31.58 2.10
4104 19778 4.922206 TGGTGAAGACAAGGCATAATCTT 58.078 39.130 0.00 0.00 34.11 2.40
4106 19780 5.841957 AATGGTGAAGACAAGGCATAATC 57.158 39.130 0.00 0.00 0.00 1.75
4107 19781 7.560991 TGATAAATGGTGAAGACAAGGCATAAT 59.439 33.333 0.00 0.00 0.00 1.28
4108 19782 6.889177 TGATAAATGGTGAAGACAAGGCATAA 59.111 34.615 0.00 0.00 0.00 1.90
4110 19784 5.263599 TGATAAATGGTGAAGACAAGGCAT 58.736 37.500 0.00 0.00 0.00 4.40
4111 19785 4.661222 TGATAAATGGTGAAGACAAGGCA 58.339 39.130 0.00 0.00 0.00 4.75
4113 19787 7.037438 CCAAATGATAAATGGTGAAGACAAGG 58.963 38.462 0.00 0.00 0.00 3.61
4114 19788 7.037438 CCCAAATGATAAATGGTGAAGACAAG 58.963 38.462 0.00 0.00 32.13 3.16
4115 19789 6.574073 GCCCAAATGATAAATGGTGAAGACAA 60.574 38.462 0.00 0.00 32.13 3.18
4116 19790 5.105392 GCCCAAATGATAAATGGTGAAGACA 60.105 40.000 0.00 0.00 32.13 3.41
4118 19792 4.405358 GGCCCAAATGATAAATGGTGAAGA 59.595 41.667 0.00 0.00 32.13 2.87
4120 19794 4.099633 TGGCCCAAATGATAAATGGTGAA 58.900 39.130 0.00 0.00 32.13 3.18
4122 19796 4.484537 TTGGCCCAAATGATAAATGGTG 57.515 40.909 0.00 0.00 32.13 4.17
4124 19798 9.439500 CTATAAATTGGCCCAAATGATAAATGG 57.561 33.333 0.00 0.00 0.00 3.16
4125 19799 8.938906 GCTATAAATTGGCCCAAATGATAAATG 58.061 33.333 0.00 0.00 0.00 2.32
4127 19801 8.261349 AGCTATAAATTGGCCCAAATGATAAA 57.739 30.769 0.00 0.00 0.00 1.40
4128 19802 7.729881 AGAGCTATAAATTGGCCCAAATGATAA 59.270 33.333 0.00 0.00 0.00 1.75
4129 19803 7.177216 CAGAGCTATAAATTGGCCCAAATGATA 59.823 37.037 0.00 0.00 0.00 2.15
4130 19804 6.014840 CAGAGCTATAAATTGGCCCAAATGAT 60.015 38.462 0.00 0.00 0.00 2.45
4132 19806 5.302568 TCAGAGCTATAAATTGGCCCAAATG 59.697 40.000 0.00 0.00 0.00 2.32
4133 19807 5.302823 GTCAGAGCTATAAATTGGCCCAAAT 59.697 40.000 0.00 0.00 0.00 2.32
4134 19808 4.644685 GTCAGAGCTATAAATTGGCCCAAA 59.355 41.667 0.00 0.00 0.00 3.28
4135 19809 4.207165 GTCAGAGCTATAAATTGGCCCAA 58.793 43.478 0.00 0.00 0.00 4.12
4137 19811 3.820557 TGTCAGAGCTATAAATTGGCCC 58.179 45.455 0.00 0.00 0.00 5.80
4138 19812 4.261363 GCTTGTCAGAGCTATAAATTGGCC 60.261 45.833 0.00 0.00 39.57 5.36
4139 19813 4.336433 TGCTTGTCAGAGCTATAAATTGGC 59.664 41.667 0.00 0.00 43.11 4.52
4140 19814 6.441093 TTGCTTGTCAGAGCTATAAATTGG 57.559 37.500 0.00 0.00 43.11 3.16
4144 19818 8.551205 CGATAAATTGCTTGTCAGAGCTATAAA 58.449 33.333 0.00 0.00 43.11 1.40
4146 19820 6.646653 CCGATAAATTGCTTGTCAGAGCTATA 59.353 38.462 0.00 0.00 43.11 1.31
4148 19822 4.811024 CCGATAAATTGCTTGTCAGAGCTA 59.189 41.667 0.00 2.52 43.11 3.32
4149 19823 3.624861 CCGATAAATTGCTTGTCAGAGCT 59.375 43.478 0.00 0.00 43.11 4.09
4150 19824 3.242870 CCCGATAAATTGCTTGTCAGAGC 60.243 47.826 0.00 0.00 43.00 4.09
4151 19825 4.191544 TCCCGATAAATTGCTTGTCAGAG 58.808 43.478 0.00 0.00 0.00 3.35
4153 19827 4.963276 TTCCCGATAAATTGCTTGTCAG 57.037 40.909 0.00 0.00 0.00 3.51
4155 19829 5.757850 AGATTCCCGATAAATTGCTTGTC 57.242 39.130 0.00 0.00 0.00 3.18
4156 19830 5.531287 GGTAGATTCCCGATAAATTGCTTGT 59.469 40.000 0.00 0.00 0.00 3.16
4157 19831 5.530915 TGGTAGATTCCCGATAAATTGCTTG 59.469 40.000 0.00 0.00 0.00 4.01
4158 19832 5.690865 TGGTAGATTCCCGATAAATTGCTT 58.309 37.500 0.00 0.00 0.00 3.91
4160 19834 6.575162 ATTGGTAGATTCCCGATAAATTGC 57.425 37.500 0.00 0.00 0.00 3.56
4164 19838 8.573035 GCAATTTATTGGTAGATTCCCGATAAA 58.427 33.333 12.11 12.11 45.65 1.40
4165 19839 7.094975 CGCAATTTATTGGTAGATTCCCGATAA 60.095 37.037 4.76 0.00 36.81 1.75
4166 19840 6.370442 CGCAATTTATTGGTAGATTCCCGATA 59.630 38.462 4.76 0.00 38.21 2.92
4167 19841 5.181245 CGCAATTTATTGGTAGATTCCCGAT 59.819 40.000 4.76 0.00 38.21 4.18
4168 19842 4.513692 CGCAATTTATTGGTAGATTCCCGA 59.486 41.667 4.76 0.00 38.21 5.14
4169 19843 4.783242 CGCAATTTATTGGTAGATTCCCG 58.217 43.478 4.76 0.00 38.21 5.14
4172 19846 5.438761 AGGCGCAATTTATTGGTAGATTC 57.561 39.130 10.83 0.00 38.21 2.52
4174 19848 6.714810 TGAATAGGCGCAATTTATTGGTAGAT 59.285 34.615 10.83 0.00 38.21 1.98
4175 19849 6.058833 TGAATAGGCGCAATTTATTGGTAGA 58.941 36.000 10.83 0.00 38.21 2.59
4176 19850 6.312399 TGAATAGGCGCAATTTATTGGTAG 57.688 37.500 10.83 0.00 38.21 3.18
4177 19851 6.892658 ATGAATAGGCGCAATTTATTGGTA 57.107 33.333 10.83 0.00 38.21 3.25
4178 19852 5.789643 ATGAATAGGCGCAATTTATTGGT 57.210 34.783 10.83 0.00 38.21 3.67
4180 19854 6.306356 GTGCTATGAATAGGCGCAATTTATTG 59.694 38.462 10.83 12.12 40.66 1.90
4181 19855 6.207417 AGTGCTATGAATAGGCGCAATTTATT 59.793 34.615 10.83 7.54 31.77 1.40
4182 19856 5.707298 AGTGCTATGAATAGGCGCAATTTAT 59.293 36.000 10.83 12.82 31.77 1.40
4183 19857 5.063204 AGTGCTATGAATAGGCGCAATTTA 58.937 37.500 10.83 5.66 31.77 1.40
4186 19860 3.131709 AGTGCTATGAATAGGCGCAAT 57.868 42.857 10.83 0.00 31.77 3.56
4188 19862 3.006859 ACATAGTGCTATGAATAGGCGCA 59.993 43.478 21.81 0.00 44.22 6.09
4193 19867 7.250445 TGTGCAAACATAGTGCTATGAATAG 57.750 36.000 21.81 11.48 44.22 1.73
4194 19868 7.622893 TTGTGCAAACATAGTGCTATGAATA 57.377 32.000 21.81 4.91 44.22 1.75
4195 19869 6.513806 TTGTGCAAACATAGTGCTATGAAT 57.486 33.333 21.81 10.10 44.22 2.57
4196 19870 5.956068 TTGTGCAAACATAGTGCTATGAA 57.044 34.783 21.81 5.12 44.22 2.57
4197 19871 5.956068 TTTGTGCAAACATAGTGCTATGA 57.044 34.783 21.81 0.91 44.22 2.15
4220 19894 9.396022 AGGTCCACAAAACACAAAGATATATAG 57.604 33.333 0.00 0.00 0.00 1.31
4221 19895 9.747898 AAGGTCCACAAAACACAAAGATATATA 57.252 29.630 0.00 0.00 0.00 0.86
4224 19898 6.323739 ACAAGGTCCACAAAACACAAAGATAT 59.676 34.615 0.00 0.00 0.00 1.63
4225 19899 5.654650 ACAAGGTCCACAAAACACAAAGATA 59.345 36.000 0.00 0.00 0.00 1.98
4226 19900 4.466015 ACAAGGTCCACAAAACACAAAGAT 59.534 37.500 0.00 0.00 0.00 2.40
4228 19902 4.186856 ACAAGGTCCACAAAACACAAAG 57.813 40.909 0.00 0.00 0.00 2.77
4230 19904 4.523173 TGTAACAAGGTCCACAAAACACAA 59.477 37.500 0.00 0.00 0.00 3.33
4231 19905 4.079970 TGTAACAAGGTCCACAAAACACA 58.920 39.130 0.00 0.00 0.00 3.72
4232 19906 4.705337 TGTAACAAGGTCCACAAAACAC 57.295 40.909 0.00 0.00 0.00 3.32
4233 19907 7.589958 ATTATGTAACAAGGTCCACAAAACA 57.410 32.000 0.00 0.00 0.00 2.83
4234 19908 9.567848 CATATTATGTAACAAGGTCCACAAAAC 57.432 33.333 0.00 0.00 0.00 2.43
4235 19909 9.303116 ACATATTATGTAACAAGGTCCACAAAA 57.697 29.630 7.55 0.00 42.78 2.44
4236 19910 8.871629 ACATATTATGTAACAAGGTCCACAAA 57.128 30.769 7.55 0.00 42.78 2.83
4259 19933 8.687242 TGACAAACAAAATAGGACAACATTACA 58.313 29.630 0.00 0.00 0.00 2.41
4267 19941 9.438228 TCGTATAATGACAAACAAAATAGGACA 57.562 29.630 0.00 0.00 0.00 4.02
4268 19942 9.916397 CTCGTATAATGACAAACAAAATAGGAC 57.084 33.333 0.00 0.00 0.00 3.85
4269 19943 9.104965 CCTCGTATAATGACAAACAAAATAGGA 57.895 33.333 0.00 0.00 0.00 2.94
4274 19948 9.004717 TGAATCCTCGTATAATGACAAACAAAA 57.995 29.630 0.00 0.00 0.00 2.44
4276 19950 8.554835 TTGAATCCTCGTATAATGACAAACAA 57.445 30.769 0.00 0.00 0.00 2.83
4278 19952 8.122952 CCTTTGAATCCTCGTATAATGACAAAC 58.877 37.037 0.00 0.00 0.00 2.93
4280 19954 6.260050 GCCTTTGAATCCTCGTATAATGACAA 59.740 38.462 0.00 0.00 0.00 3.18
4282 19956 5.992217 AGCCTTTGAATCCTCGTATAATGAC 59.008 40.000 0.00 0.00 0.00 3.06
4283 19957 6.174720 AGCCTTTGAATCCTCGTATAATGA 57.825 37.500 0.00 0.00 0.00 2.57
4285 19959 6.497259 TCCTAGCCTTTGAATCCTCGTATAAT 59.503 38.462 0.00 0.00 0.00 1.28
4287 19961 5.391256 TCCTAGCCTTTGAATCCTCGTATA 58.609 41.667 0.00 0.00 0.00 1.47
4289 19963 3.638860 TCCTAGCCTTTGAATCCTCGTA 58.361 45.455 0.00 0.00 0.00 3.43
4290 19964 2.467880 TCCTAGCCTTTGAATCCTCGT 58.532 47.619 0.00 0.00 0.00 4.18
4291 19965 3.543680 TTCCTAGCCTTTGAATCCTCG 57.456 47.619 0.00 0.00 0.00 4.63
4293 19967 5.456921 TTGATTCCTAGCCTTTGAATCCT 57.543 39.130 13.06 0.00 42.26 3.24
4294 19968 5.595952 ACATTGATTCCTAGCCTTTGAATCC 59.404 40.000 13.06 1.37 42.26 3.01
4295 19969 6.705863 ACATTGATTCCTAGCCTTTGAATC 57.294 37.500 10.19 10.19 42.90 2.52
4296 19970 7.615365 TGTTACATTGATTCCTAGCCTTTGAAT 59.385 33.333 0.00 0.00 0.00 2.57
4297 19971 6.945435 TGTTACATTGATTCCTAGCCTTTGAA 59.055 34.615 0.00 0.00 0.00 2.69
4298 19972 6.374333 GTGTTACATTGATTCCTAGCCTTTGA 59.626 38.462 0.00 0.00 0.00 2.69
4299 19973 6.375455 AGTGTTACATTGATTCCTAGCCTTTG 59.625 38.462 0.00 0.00 0.00 2.77
4301 19975 6.067217 AGTGTTACATTGATTCCTAGCCTT 57.933 37.500 0.00 0.00 0.00 4.35
4303 19977 6.037610 CAGAAGTGTTACATTGATTCCTAGCC 59.962 42.308 0.00 0.00 0.00 3.93
4304 19978 6.595716 ACAGAAGTGTTACATTGATTCCTAGC 59.404 38.462 0.00 0.00 30.30 3.42
4305 19979 9.088512 GTACAGAAGTGTTACATTGATTCCTAG 57.911 37.037 0.00 0.00 38.19 3.02
4307 19981 7.450074 TGTACAGAAGTGTTACATTGATTCCT 58.550 34.615 0.00 0.00 38.19 3.36
4308 19982 7.667043 TGTACAGAAGTGTTACATTGATTCC 57.333 36.000 0.00 0.00 38.19 3.01
4317 19991 9.607285 CCAAACAATATTGTACAGAAGTGTTAC 57.393 33.333 21.07 0.00 41.31 2.50
4318 19992 9.344772 ACCAAACAATATTGTACAGAAGTGTTA 57.655 29.630 21.07 0.00 41.31 2.41
4320 19994 7.284489 ACACCAAACAATATTGTACAGAAGTGT 59.716 33.333 21.07 21.34 41.31 3.55
4324 19998 8.226819 TCAACACCAAACAATATTGTACAGAA 57.773 30.769 21.07 0.00 41.31 3.02
4325 19999 7.809546 TCAACACCAAACAATATTGTACAGA 57.190 32.000 21.07 8.42 41.31 3.41
4330 20004 9.801873 GCTATATTCAACACCAAACAATATTGT 57.198 29.630 15.47 15.47 44.72 2.71
4331 20005 9.800433 TGCTATATTCAACACCAAACAATATTG 57.200 29.630 14.01 14.01 0.00 1.90
4350 20024 9.297037 GGTTCCCAACACTAAAATATGCTATAT 57.703 33.333 0.00 0.00 0.00 0.86
4351 20025 8.499406 AGGTTCCCAACACTAAAATATGCTATA 58.501 33.333 0.00 0.00 0.00 1.31
4352 20026 7.285401 CAGGTTCCCAACACTAAAATATGCTAT 59.715 37.037 0.00 0.00 0.00 2.97
4354 20028 5.418840 CAGGTTCCCAACACTAAAATATGCT 59.581 40.000 0.00 0.00 0.00 3.79
4355 20029 5.394115 CCAGGTTCCCAACACTAAAATATGC 60.394 44.000 0.00 0.00 0.00 3.14
4356 20030 5.127031 CCCAGGTTCCCAACACTAAAATATG 59.873 44.000 0.00 0.00 0.00 1.78
4357 20031 5.015817 TCCCAGGTTCCCAACACTAAAATAT 59.984 40.000 0.00 0.00 0.00 1.28
4358 20032 4.354387 TCCCAGGTTCCCAACACTAAAATA 59.646 41.667 0.00 0.00 0.00 1.40
4359 20033 3.141272 TCCCAGGTTCCCAACACTAAAAT 59.859 43.478 0.00 0.00 0.00 1.82
4362 20036 1.822425 TCCCAGGTTCCCAACACTAA 58.178 50.000 0.00 0.00 0.00 2.24
4363 20037 2.053747 ATCCCAGGTTCCCAACACTA 57.946 50.000 0.00 0.00 0.00 2.74
4364 20038 1.158007 AATCCCAGGTTCCCAACACT 58.842 50.000 0.00 0.00 0.00 3.55
4365 20039 2.009681 AAATCCCAGGTTCCCAACAC 57.990 50.000 0.00 0.00 0.00 3.32
4367 20041 2.310647 TCCTAAATCCCAGGTTCCCAAC 59.689 50.000 0.00 0.00 34.56 3.77
4370 20044 3.750501 TTTCCTAAATCCCAGGTTCCC 57.249 47.619 0.00 0.00 34.56 3.97
4390 20064 6.569780 GGACGGCTATTAATCAACCATTTTT 58.430 36.000 0.00 0.00 0.00 1.94
4391 20065 5.220970 CGGACGGCTATTAATCAACCATTTT 60.221 40.000 0.00 0.00 0.00 1.82
4392 20066 4.274950 CGGACGGCTATTAATCAACCATTT 59.725 41.667 0.00 0.00 0.00 2.32
4394 20068 3.070446 TCGGACGGCTATTAATCAACCAT 59.930 43.478 0.00 0.00 0.00 3.55
4395 20069 2.431419 TCGGACGGCTATTAATCAACCA 59.569 45.455 0.00 0.00 0.00 3.67
4396 20070 3.102052 TCGGACGGCTATTAATCAACC 57.898 47.619 0.00 0.00 0.00 3.77
4397 20071 6.774354 TTTATCGGACGGCTATTAATCAAC 57.226 37.500 0.00 0.00 0.00 3.18
4400 20074 7.591006 TGATTTTATCGGACGGCTATTAATC 57.409 36.000 0.00 0.00 0.00 1.75
4401 20075 7.972832 TTGATTTTATCGGACGGCTATTAAT 57.027 32.000 0.00 0.00 0.00 1.40
4402 20076 7.972832 ATTGATTTTATCGGACGGCTATTAA 57.027 32.000 0.00 0.00 0.00 1.40
4403 20077 7.972832 AATTGATTTTATCGGACGGCTATTA 57.027 32.000 0.00 0.00 0.00 0.98
4406 20080 7.972832 ATTAATTGATTTTATCGGACGGCTA 57.027 32.000 0.00 0.00 0.00 3.93
4408 20082 9.620660 ATTAATTAATTGATTTTATCGGACGGC 57.379 29.630 11.05 0.00 0.00 5.68
4435 20109 8.978539 TGTGAATTAGAGATTAATCGGAAATCG 58.021 33.333 9.78 0.00 38.20 3.34
4439 20113 7.439356 CAGCTGTGAATTAGAGATTAATCGGAA 59.561 37.037 5.25 6.09 0.00 4.30
4441 20115 6.925718 TCAGCTGTGAATTAGAGATTAATCGG 59.074 38.462 14.67 0.00 0.00 4.18
4443 20117 7.095857 CGGTCAGCTGTGAATTAGAGATTAATC 60.096 40.741 14.67 7.41 33.27 1.75
4444 20118 6.703607 CGGTCAGCTGTGAATTAGAGATTAAT 59.296 38.462 14.67 0.00 33.27 1.40
4445 20119 6.042777 CGGTCAGCTGTGAATTAGAGATTAA 58.957 40.000 14.67 0.00 33.27 1.40
4447 20121 4.160439 TCGGTCAGCTGTGAATTAGAGATT 59.840 41.667 14.67 0.00 33.27 2.40
4448 20122 3.701542 TCGGTCAGCTGTGAATTAGAGAT 59.298 43.478 14.67 0.00 33.27 2.75
4450 20124 3.129462 TCTCGGTCAGCTGTGAATTAGAG 59.871 47.826 14.67 13.10 33.27 2.43
4452 20126 3.182967 GTCTCGGTCAGCTGTGAATTAG 58.817 50.000 14.67 5.52 33.27 1.73
4453 20127 2.560981 TGTCTCGGTCAGCTGTGAATTA 59.439 45.455 14.67 0.00 33.27 1.40
4454 20128 1.344438 TGTCTCGGTCAGCTGTGAATT 59.656 47.619 14.67 0.00 33.27 2.17
4457 20131 0.823769 AGTGTCTCGGTCAGCTGTGA 60.824 55.000 14.67 9.52 0.00 3.58
4458 20132 0.881796 TAGTGTCTCGGTCAGCTGTG 59.118 55.000 14.67 5.32 0.00 3.66
4459 20133 1.269998 GTTAGTGTCTCGGTCAGCTGT 59.730 52.381 14.67 0.00 0.00 4.40
4460 20134 1.729472 CGTTAGTGTCTCGGTCAGCTG 60.729 57.143 7.63 7.63 0.00 4.24
4462 20136 0.520404 TCGTTAGTGTCTCGGTCAGC 59.480 55.000 0.00 0.00 0.00 4.26
4463 20137 4.589252 CTTATCGTTAGTGTCTCGGTCAG 58.411 47.826 0.00 0.00 0.00 3.51
4464 20138 3.181503 GCTTATCGTTAGTGTCTCGGTCA 60.182 47.826 0.00 0.00 0.00 4.02
4465 20139 3.361414 GCTTATCGTTAGTGTCTCGGTC 58.639 50.000 0.00 0.00 0.00 4.79
4466 20140 2.098770 GGCTTATCGTTAGTGTCTCGGT 59.901 50.000 0.00 0.00 0.00 4.69
4467 20141 2.098607 TGGCTTATCGTTAGTGTCTCGG 59.901 50.000 0.00 0.00 0.00 4.63
4468 20142 3.416119 TGGCTTATCGTTAGTGTCTCG 57.584 47.619 0.00 0.00 0.00 4.04
4469 20143 6.071840 AGGATATGGCTTATCGTTAGTGTCTC 60.072 42.308 12.61 0.00 38.08 3.36
4470 20144 5.775701 AGGATATGGCTTATCGTTAGTGTCT 59.224 40.000 12.61 1.58 38.08 3.41
4471 20145 6.026947 AGGATATGGCTTATCGTTAGTGTC 57.973 41.667 12.61 0.00 38.08 3.67
4472 20146 5.538813 TGAGGATATGGCTTATCGTTAGTGT 59.461 40.000 14.38 0.00 38.08 3.55
4473 20147 6.025749 TGAGGATATGGCTTATCGTTAGTG 57.974 41.667 14.38 0.00 38.08 2.74
4474 20148 6.859112 ATGAGGATATGGCTTATCGTTAGT 57.141 37.500 14.38 4.48 38.08 2.24
4475 20149 9.254133 CAATATGAGGATATGGCTTATCGTTAG 57.746 37.037 14.38 0.00 38.08 2.34
4476 20150 8.977412 TCAATATGAGGATATGGCTTATCGTTA 58.023 33.333 14.38 11.68 38.08 3.18
4477 20151 7.851228 TCAATATGAGGATATGGCTTATCGTT 58.149 34.615 14.38 6.45 38.08 3.85
4479 20153 8.899427 AATCAATATGAGGATATGGCTTATCG 57.101 34.615 12.61 0.00 38.08 2.92
4578 21478 9.665264 GAGAACTTCAACTATTTTTGAACGAAT 57.335 29.630 0.00 0.00 39.94 3.34
4579 21479 7.849026 CGAGAACTTCAACTATTTTTGAACGAA 59.151 33.333 0.00 0.00 39.94 3.85
4604 22657 8.844441 TCAAATAAGTTTAACTTTGGACAACG 57.156 30.769 15.83 0.00 39.51 4.10
4780 26966 6.744056 GCCCACTTCCCAAATAATTGAAGTTT 60.744 38.462 4.36 0.00 38.94 2.66
4795 26981 0.886490 CTCGCATATGCCCACTTCCC 60.886 60.000 21.77 0.00 37.91 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.