Multiple sequence alignment - TraesCS5B01G298000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G298000 chr5B 100.000 4357 0 0 1 4357 480305042 480300686 0.000000e+00 8046
1 TraesCS5B01G298000 chr5D 97.339 2029 54 0 1342 3370 400297270 400295242 0.000000e+00 3448
2 TraesCS5B01G298000 chr5D 88.591 149 9 3 3757 3898 400295024 400294877 1.610000e-39 174
3 TraesCS5B01G298000 chr5A 96.843 2059 58 3 1342 3393 505628055 505625997 0.000000e+00 3435
4 TraesCS5B01G298000 chr5A 89.954 219 8 3 3484 3688 505625963 505625745 2.000000e-68 270
5 TraesCS5B01G298000 chr5A 85.279 197 19 3 3709 3896 505625759 505625564 1.240000e-45 195
6 TraesCS5B01G298000 chr7B 91.777 2043 148 13 1354 3377 586265794 586263753 0.000000e+00 2824
7 TraesCS5B01G298000 chr7B 92.517 1951 134 7 1375 3313 586659634 586661584 0.000000e+00 2784
8 TraesCS5B01G298000 chr7B 96.167 1200 34 3 145 1342 520120539 520121728 0.000000e+00 1951
9 TraesCS5B01G298000 chr7B 89.546 507 50 3 2810 3314 586668643 586669148 1.320000e-179 640
10 TraesCS5B01G298000 chr7B 90.749 454 37 4 3902 4355 56384332 56384780 6.230000e-168 601
11 TraesCS5B01G298000 chr7B 80.879 455 47 26 3902 4355 595680932 595680517 5.440000e-84 322
12 TraesCS5B01G298000 chr7A 91.942 1998 150 9 1390 3377 624967076 624965080 0.000000e+00 2787
13 TraesCS5B01G298000 chr7D 92.176 1981 136 13 1351 3314 543602249 543604227 0.000000e+00 2782
14 TraesCS5B01G298000 chr7D 92.225 1942 137 10 1354 3282 543059639 543057699 0.000000e+00 2737
15 TraesCS5B01G298000 chr3A 99.329 1342 9 0 1 1342 35855091 35856432 0.000000e+00 2429
16 TraesCS5B01G298000 chr1A 97.251 1346 37 0 1 1346 458920342 458918997 0.000000e+00 2281
17 TraesCS5B01G298000 chr2A 96.313 1356 36 2 1 1342 388473166 388474521 0.000000e+00 2215
18 TraesCS5B01G298000 chr2A 96.018 1356 40 2 1 1342 92973661 92972306 0.000000e+00 2193
19 TraesCS5B01G298000 chr2A 80.979 1819 315 18 1469 3275 776218355 776216556 0.000000e+00 1413
20 TraesCS5B01G298000 chr2A 80.983 468 52 23 3900 4355 768679373 768678931 1.940000e-88 337
21 TraesCS5B01G298000 chr6B 96.165 1356 38 2 1 1342 57590051 57591406 0.000000e+00 2204
22 TraesCS5B01G298000 chr6B 89.624 1224 79 16 1 1180 420846215 420847434 0.000000e+00 1513
23 TraesCS5B01G298000 chr2D 88.431 1383 115 18 1 1342 616445539 616444161 0.000000e+00 1626
24 TraesCS5B01G298000 chr2D 81.683 1818 304 20 1469 3275 651417415 651419214 0.000000e+00 1485
25 TraesCS5B01G298000 chr3B 99.655 870 3 0 473 1342 532197478 532196609 0.000000e+00 1591
26 TraesCS5B01G298000 chr3B 99.163 478 4 0 1 478 532206753 532206276 0.000000e+00 861
27 TraesCS5B01G298000 chrUn 97.031 842 25 0 212 1053 41935508 41934667 0.000000e+00 1417
28 TraesCS5B01G298000 chrUn 95.732 820 21 1 537 1342 382215290 382216109 0.000000e+00 1308
29 TraesCS5B01G298000 chrUn 95.732 820 21 1 537 1342 382217037 382217856 0.000000e+00 1308
30 TraesCS5B01G298000 chrUn 95.610 820 22 2 537 1342 382224025 382224844 0.000000e+00 1303
31 TraesCS5B01G298000 chrUn 97.297 407 11 0 1 407 315702677 315703083 0.000000e+00 691
32 TraesCS5B01G298000 chr4A 75.809 1236 280 13 1829 3050 110638673 110637443 3.730000e-170 608
33 TraesCS5B01G298000 chr4D 75.639 1252 284 15 1814 3050 354136552 354137797 1.730000e-168 603


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G298000 chr5B 480300686 480305042 4356 True 8046 8046 100.000 1 4357 1 chr5B.!!$R1 4356
1 TraesCS5B01G298000 chr5D 400294877 400297270 2393 True 1811 3448 92.965 1342 3898 2 chr5D.!!$R1 2556
2 TraesCS5B01G298000 chr5A 505625564 505628055 2491 True 1300 3435 90.692 1342 3896 3 chr5A.!!$R1 2554
3 TraesCS5B01G298000 chr7B 586263753 586265794 2041 True 2824 2824 91.777 1354 3377 1 chr7B.!!$R1 2023
4 TraesCS5B01G298000 chr7B 586659634 586661584 1950 False 2784 2784 92.517 1375 3313 1 chr7B.!!$F3 1938
5 TraesCS5B01G298000 chr7B 520120539 520121728 1189 False 1951 1951 96.167 145 1342 1 chr7B.!!$F2 1197
6 TraesCS5B01G298000 chr7B 586668643 586669148 505 False 640 640 89.546 2810 3314 1 chr7B.!!$F4 504
7 TraesCS5B01G298000 chr7A 624965080 624967076 1996 True 2787 2787 91.942 1390 3377 1 chr7A.!!$R1 1987
8 TraesCS5B01G298000 chr7D 543602249 543604227 1978 False 2782 2782 92.176 1351 3314 1 chr7D.!!$F1 1963
9 TraesCS5B01G298000 chr7D 543057699 543059639 1940 True 2737 2737 92.225 1354 3282 1 chr7D.!!$R1 1928
10 TraesCS5B01G298000 chr3A 35855091 35856432 1341 False 2429 2429 99.329 1 1342 1 chr3A.!!$F1 1341
11 TraesCS5B01G298000 chr1A 458918997 458920342 1345 True 2281 2281 97.251 1 1346 1 chr1A.!!$R1 1345
12 TraesCS5B01G298000 chr2A 388473166 388474521 1355 False 2215 2215 96.313 1 1342 1 chr2A.!!$F1 1341
13 TraesCS5B01G298000 chr2A 92972306 92973661 1355 True 2193 2193 96.018 1 1342 1 chr2A.!!$R1 1341
14 TraesCS5B01G298000 chr2A 776216556 776218355 1799 True 1413 1413 80.979 1469 3275 1 chr2A.!!$R3 1806
15 TraesCS5B01G298000 chr6B 57590051 57591406 1355 False 2204 2204 96.165 1 1342 1 chr6B.!!$F1 1341
16 TraesCS5B01G298000 chr6B 420846215 420847434 1219 False 1513 1513 89.624 1 1180 1 chr6B.!!$F2 1179
17 TraesCS5B01G298000 chr2D 616444161 616445539 1378 True 1626 1626 88.431 1 1342 1 chr2D.!!$R1 1341
18 TraesCS5B01G298000 chr2D 651417415 651419214 1799 False 1485 1485 81.683 1469 3275 1 chr2D.!!$F1 1806
19 TraesCS5B01G298000 chr3B 532196609 532197478 869 True 1591 1591 99.655 473 1342 1 chr3B.!!$R1 869
20 TraesCS5B01G298000 chrUn 41934667 41935508 841 True 1417 1417 97.031 212 1053 1 chrUn.!!$R1 841
21 TraesCS5B01G298000 chrUn 382215290 382217856 2566 False 1308 1308 95.732 537 1342 2 chrUn.!!$F3 805
22 TraesCS5B01G298000 chrUn 382224025 382224844 819 False 1303 1303 95.610 537 1342 1 chrUn.!!$F2 805
23 TraesCS5B01G298000 chr4A 110637443 110638673 1230 True 608 608 75.809 1829 3050 1 chr4A.!!$R1 1221
24 TraesCS5B01G298000 chr4D 354136552 354137797 1245 False 603 603 75.639 1814 3050 1 chr4D.!!$F1 1236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 2585 8.659925 TGCATTGTAAAGTCATTTTGTTTCAT 57.340 26.923 0.00 0.00 0.0 2.57 F
2383 3703 0.734253 CGGTTCGAGGAGCTCAACAG 60.734 60.000 17.19 8.14 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3158 4479 1.283321 GCATCCTGGACCTTCTCCTTT 59.717 52.381 0.00 0.00 40.26 3.11 R
3922 5282 0.029967 TTTTCGCTGCGCATGAAACA 59.970 45.000 27.54 19.05 31.81 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1311 2585 8.659925 TGCATTGTAAAGTCATTTTGTTTCAT 57.340 26.923 0.00 0.00 0.00 2.57
1364 2638 5.062809 GTCAAATCAAACCAAGCAAAACGAA 59.937 36.000 0.00 0.00 0.00 3.85
1405 2689 1.873903 GCCGATGTGGATGTTCGCTAT 60.874 52.381 0.00 0.00 42.00 2.97
1412 2696 1.679153 TGGATGTTCGCTATGCTCGTA 59.321 47.619 0.00 0.00 0.00 3.43
1671 2976 1.138883 GAGCGCACCATCTACGACA 59.861 57.895 11.47 0.00 0.00 4.35
1699 3004 3.833645 CATCGGCCGGGACTTCGA 61.834 66.667 27.83 2.60 36.07 3.71
1734 3039 2.110967 CGGGACATCAAGCTGCTGG 61.111 63.158 1.35 0.00 0.00 4.85
1946 3251 4.431131 CGCCAGGCCACCAAGGAT 62.431 66.667 5.01 0.00 41.22 3.24
2356 3676 2.103934 CTTCTCGGAGCCGCTCAG 59.896 66.667 21.76 17.77 39.59 3.35
2383 3703 0.734253 CGGTTCGAGGAGCTCAACAG 60.734 60.000 17.19 8.14 0.00 3.16
2558 3878 0.965363 CCAACAAGGGGGTCAATCCG 60.965 60.000 0.00 0.00 37.00 4.18
3110 4431 3.371898 TCGAGACATACGTGTACGACATT 59.628 43.478 11.79 0.00 40.00 2.71
3158 4479 0.911769 ACGCCATGGAAGGAGATGAA 59.088 50.000 18.40 0.00 32.29 2.57
3329 4650 1.400494 GCACCGGATGATAACAACACC 59.600 52.381 9.46 0.00 0.00 4.16
3331 4652 1.295792 CCGGATGATAACAACACCGG 58.704 55.000 16.36 16.36 45.72 5.28
3376 4700 0.822532 GCATGGGCAGCTTGCTAGAT 60.823 55.000 0.00 0.00 44.28 1.98
3377 4701 1.688772 CATGGGCAGCTTGCTAGATT 58.311 50.000 0.00 0.00 44.28 2.40
3378 4702 2.029623 CATGGGCAGCTTGCTAGATTT 58.970 47.619 0.00 0.00 44.28 2.17
3379 4703 2.220653 TGGGCAGCTTGCTAGATTTT 57.779 45.000 0.00 0.00 44.28 1.82
3380 4704 2.528564 TGGGCAGCTTGCTAGATTTTT 58.471 42.857 0.00 0.00 44.28 1.94
3412 4736 1.659794 TTTTTGCGAGGGAGCTTGC 59.340 52.632 0.00 0.00 38.13 4.01
3413 4737 0.823356 TTTTTGCGAGGGAGCTTGCT 60.823 50.000 0.00 0.00 38.13 3.91
3414 4738 0.036164 TTTTGCGAGGGAGCTTGCTA 59.964 50.000 0.00 0.00 38.13 3.49
3415 4739 0.391661 TTTGCGAGGGAGCTTGCTAG 60.392 55.000 0.00 0.00 38.13 3.42
3416 4740 1.257750 TTGCGAGGGAGCTTGCTAGA 61.258 55.000 0.00 0.00 38.13 2.43
3422 4746 3.431486 CGAGGGAGCTTGCTAGATCTTTT 60.431 47.826 12.96 0.00 37.00 2.27
3429 4753 7.041712 GGGAGCTTGCTAGATCTTTTGTATTAC 60.042 40.741 12.96 0.00 37.00 1.89
3462 4798 9.995003 TTTATTTTTATCTGTTTTGCATCCTGT 57.005 25.926 0.00 0.00 0.00 4.00
3608 4956 4.714802 TGGAAAGCAGGTATAACTCTAGCA 59.285 41.667 1.85 0.00 0.00 3.49
3650 5000 6.818644 TGTACTTGCTCACTATCCAAATTCTC 59.181 38.462 0.00 0.00 0.00 2.87
3676 5026 4.929819 AAACTTACGTTTTGCCCTGAAT 57.070 36.364 0.00 0.00 40.30 2.57
3677 5027 4.929819 AACTTACGTTTTGCCCTGAATT 57.070 36.364 0.00 0.00 0.00 2.17
3678 5028 4.929819 ACTTACGTTTTGCCCTGAATTT 57.070 36.364 0.00 0.00 0.00 1.82
3679 5029 4.616953 ACTTACGTTTTGCCCTGAATTTG 58.383 39.130 0.00 0.00 0.00 2.32
3680 5030 4.098807 ACTTACGTTTTGCCCTGAATTTGT 59.901 37.500 0.00 0.00 0.00 2.83
3681 5031 5.299782 ACTTACGTTTTGCCCTGAATTTGTA 59.700 36.000 0.00 0.00 0.00 2.41
3682 5032 4.237349 ACGTTTTGCCCTGAATTTGTAG 57.763 40.909 0.00 0.00 0.00 2.74
3683 5033 3.634910 ACGTTTTGCCCTGAATTTGTAGT 59.365 39.130 0.00 0.00 0.00 2.73
3684 5034 3.980775 CGTTTTGCCCTGAATTTGTAGTG 59.019 43.478 0.00 0.00 0.00 2.74
3685 5035 4.261405 CGTTTTGCCCTGAATTTGTAGTGA 60.261 41.667 0.00 0.00 0.00 3.41
3686 5036 4.846779 TTTGCCCTGAATTTGTAGTGAC 57.153 40.909 0.00 0.00 0.00 3.67
3687 5037 2.790433 TGCCCTGAATTTGTAGTGACC 58.210 47.619 0.00 0.00 0.00 4.02
3688 5038 1.737793 GCCCTGAATTTGTAGTGACCG 59.262 52.381 0.00 0.00 0.00 4.79
3689 5039 1.737793 CCCTGAATTTGTAGTGACCGC 59.262 52.381 0.00 0.00 0.00 5.68
3690 5040 1.737793 CCTGAATTTGTAGTGACCGCC 59.262 52.381 0.00 0.00 0.00 6.13
3691 5041 1.737793 CTGAATTTGTAGTGACCGCCC 59.262 52.381 0.00 0.00 0.00 6.13
3692 5042 1.092348 GAATTTGTAGTGACCGCCCC 58.908 55.000 0.00 0.00 0.00 5.80
3693 5043 0.323087 AATTTGTAGTGACCGCCCCC 60.323 55.000 0.00 0.00 0.00 5.40
3694 5044 2.530958 ATTTGTAGTGACCGCCCCCG 62.531 60.000 0.00 0.00 0.00 5.73
3700 5050 4.896829 TGACCGCCCCCGCAAAAA 62.897 61.111 0.00 0.00 34.03 1.94
3736 5086 6.665992 TGTAGTGACCAAAGTACTCATCTT 57.334 37.500 0.00 0.00 0.00 2.40
3738 5088 5.552870 AGTGACCAAAGTACTCATCTTGT 57.447 39.130 0.00 0.00 0.00 3.16
3753 5107 6.851222 TCATCTTGTGAGAGTTGACTTTTC 57.149 37.500 0.00 0.00 34.85 2.29
3755 5109 5.006153 TCTTGTGAGAGTTGACTTTTCGA 57.994 39.130 0.00 0.00 0.00 3.71
3803 5159 2.749621 GTGGGCTTAGATTGGACACTTG 59.250 50.000 0.00 0.00 0.00 3.16
3804 5160 1.745653 GGGCTTAGATTGGACACTTGC 59.254 52.381 0.00 0.00 0.00 4.01
3812 5168 4.764172 AGATTGGACACTTGCAGACTATC 58.236 43.478 0.00 0.00 0.00 2.08
3836 5192 3.117512 CCCCTCCAAACAAGCATATAGGT 60.118 47.826 0.00 0.00 0.00 3.08
3844 5200 6.238759 CCAAACAAGCATATAGGTTAGAAGGC 60.239 42.308 0.00 0.00 35.88 4.35
3846 5202 6.253946 ACAAGCATATAGGTTAGAAGGCTT 57.746 37.500 0.00 0.00 40.64 4.35
3847 5203 7.374975 ACAAGCATATAGGTTAGAAGGCTTA 57.625 36.000 0.00 0.00 38.19 3.09
3848 5204 7.802117 ACAAGCATATAGGTTAGAAGGCTTAA 58.198 34.615 0.00 0.00 38.19 1.85
3849 5205 7.934120 ACAAGCATATAGGTTAGAAGGCTTAAG 59.066 37.037 0.00 0.00 38.19 1.85
3850 5206 6.468543 AGCATATAGGTTAGAAGGCTTAAGC 58.531 40.000 19.53 19.53 41.14 3.09
3898 5258 6.712095 TGGTTCCAGATAGCATGATATTGAAC 59.288 38.462 21.43 21.43 0.00 3.18
3899 5259 6.939163 GGTTCCAGATAGCATGATATTGAACT 59.061 38.462 24.85 10.93 0.00 3.01
3900 5260 7.094890 GGTTCCAGATAGCATGATATTGAACTG 60.095 40.741 24.85 18.39 0.00 3.16
3901 5261 6.470278 TCCAGATAGCATGATATTGAACTGG 58.530 40.000 21.81 21.81 41.38 4.00
3902 5262 5.646793 CCAGATAGCATGATATTGAACTGGG 59.353 44.000 20.78 8.80 37.91 4.45
3903 5263 6.470278 CAGATAGCATGATATTGAACTGGGA 58.530 40.000 4.72 0.00 0.00 4.37
3904 5264 6.370994 CAGATAGCATGATATTGAACTGGGAC 59.629 42.308 4.72 0.00 0.00 4.46
3905 5265 3.470709 AGCATGATATTGAACTGGGACG 58.529 45.455 0.00 0.00 0.00 4.79
3906 5266 2.031682 GCATGATATTGAACTGGGACGC 60.032 50.000 0.00 0.00 0.00 5.19
3907 5267 1.934589 TGATATTGAACTGGGACGCG 58.065 50.000 3.53 3.53 0.00 6.01
3908 5268 1.217882 GATATTGAACTGGGACGCGG 58.782 55.000 12.47 0.00 0.00 6.46
3909 5269 0.539986 ATATTGAACTGGGACGCGGT 59.460 50.000 12.47 0.00 0.00 5.68
3910 5270 0.322322 TATTGAACTGGGACGCGGTT 59.678 50.000 15.96 15.96 0.00 4.44
3911 5271 0.536460 ATTGAACTGGGACGCGGTTT 60.536 50.000 16.94 0.04 0.00 3.27
3912 5272 0.748729 TTGAACTGGGACGCGGTTTT 60.749 50.000 16.94 0.00 0.00 2.43
3913 5273 0.748729 TGAACTGGGACGCGGTTTTT 60.749 50.000 16.94 0.00 0.00 1.94
3931 5291 2.392933 TTTCCGTTCGTGTTTCATGC 57.607 45.000 0.00 0.00 0.00 4.06
3932 5292 0.233590 TTCCGTTCGTGTTTCATGCG 59.766 50.000 0.00 0.00 0.00 4.73
3933 5293 1.792057 CCGTTCGTGTTTCATGCGC 60.792 57.895 0.00 0.00 0.00 6.09
3934 5294 1.083080 CGTTCGTGTTTCATGCGCA 60.083 52.632 14.96 14.96 0.00 6.09
3935 5295 1.054348 CGTTCGTGTTTCATGCGCAG 61.054 55.000 18.32 8.46 0.00 5.18
3948 5308 4.440214 CGCAGCGAAAATCCACAC 57.560 55.556 9.98 0.00 0.00 3.82
3949 5309 1.154225 CGCAGCGAAAATCCACACC 60.154 57.895 9.98 0.00 0.00 4.16
3950 5310 1.154225 GCAGCGAAAATCCACACCG 60.154 57.895 0.00 0.00 0.00 4.94
3951 5311 1.852067 GCAGCGAAAATCCACACCGT 61.852 55.000 0.00 0.00 0.00 4.83
3952 5312 0.591170 CAGCGAAAATCCACACCGTT 59.409 50.000 0.00 0.00 0.00 4.44
3953 5313 1.801771 CAGCGAAAATCCACACCGTTA 59.198 47.619 0.00 0.00 0.00 3.18
3954 5314 2.418628 CAGCGAAAATCCACACCGTTAT 59.581 45.455 0.00 0.00 0.00 1.89
3955 5315 3.078837 AGCGAAAATCCACACCGTTATT 58.921 40.909 0.00 0.00 0.00 1.40
3956 5316 3.504520 AGCGAAAATCCACACCGTTATTT 59.495 39.130 0.00 0.00 0.00 1.40
3957 5317 3.606346 GCGAAAATCCACACCGTTATTTG 59.394 43.478 0.00 0.00 0.00 2.32
3958 5318 4.614078 GCGAAAATCCACACCGTTATTTGA 60.614 41.667 0.00 0.00 0.00 2.69
3959 5319 5.636837 CGAAAATCCACACCGTTATTTGAT 58.363 37.500 0.00 0.00 0.00 2.57
3960 5320 5.511377 CGAAAATCCACACCGTTATTTGATG 59.489 40.000 0.00 0.00 0.00 3.07
3961 5321 4.370364 AATCCACACCGTTATTTGATGC 57.630 40.909 0.00 0.00 0.00 3.91
3962 5322 2.784347 TCCACACCGTTATTTGATGCA 58.216 42.857 0.00 0.00 0.00 3.96
3963 5323 3.351740 TCCACACCGTTATTTGATGCAT 58.648 40.909 0.00 0.00 0.00 3.96
3964 5324 4.518249 TCCACACCGTTATTTGATGCATA 58.482 39.130 0.00 0.00 0.00 3.14
3965 5325 5.129634 TCCACACCGTTATTTGATGCATAT 58.870 37.500 0.00 0.00 0.00 1.78
3966 5326 6.292150 TCCACACCGTTATTTGATGCATATA 58.708 36.000 0.00 0.00 0.00 0.86
3967 5327 6.939730 TCCACACCGTTATTTGATGCATATAT 59.060 34.615 0.00 0.00 0.00 0.86
3968 5328 7.022979 CCACACCGTTATTTGATGCATATATG 58.977 38.462 8.45 8.45 0.00 1.78
3969 5329 7.022979 CACACCGTTATTTGATGCATATATGG 58.977 38.462 14.51 2.58 0.00 2.74
3970 5330 6.939730 ACACCGTTATTTGATGCATATATGGA 59.060 34.615 14.51 12.15 0.00 3.41
3971 5331 7.611467 ACACCGTTATTTGATGCATATATGGAT 59.389 33.333 18.57 18.57 41.76 3.41
3980 5340 5.892160 ATGCATATATGGATCAGTGTTGC 57.108 39.130 13.50 0.00 33.26 4.17
3981 5341 4.716794 TGCATATATGGATCAGTGTTGCA 58.283 39.130 14.51 0.00 35.42 4.08
3982 5342 5.318630 TGCATATATGGATCAGTGTTGCAT 58.681 37.500 14.51 12.18 33.09 3.96
3983 5343 5.182380 TGCATATATGGATCAGTGTTGCATG 59.818 40.000 16.05 4.55 33.09 4.06
3984 5344 5.637809 CATATATGGATCAGTGTTGCATGC 58.362 41.667 11.82 11.82 0.00 4.06
3985 5345 1.842052 ATGGATCAGTGTTGCATGCA 58.158 45.000 18.46 18.46 0.00 3.96
3986 5346 1.618487 TGGATCAGTGTTGCATGCAA 58.382 45.000 28.80 28.80 0.00 4.08
3987 5347 1.542472 TGGATCAGTGTTGCATGCAAG 59.458 47.619 32.64 20.64 36.52 4.01
3988 5348 1.814394 GGATCAGTGTTGCATGCAAGA 59.186 47.619 32.64 28.73 36.52 3.02
3989 5349 2.159421 GGATCAGTGTTGCATGCAAGAG 60.159 50.000 32.64 20.10 36.52 2.85
3990 5350 2.259266 TCAGTGTTGCATGCAAGAGA 57.741 45.000 32.64 21.98 36.52 3.10
3991 5351 2.574450 TCAGTGTTGCATGCAAGAGAA 58.426 42.857 32.64 16.42 36.52 2.87
3992 5352 2.551032 TCAGTGTTGCATGCAAGAGAAG 59.449 45.455 32.64 21.81 36.52 2.85
3993 5353 1.884579 AGTGTTGCATGCAAGAGAAGG 59.115 47.619 32.64 0.00 36.52 3.46
3994 5354 1.881973 GTGTTGCATGCAAGAGAAGGA 59.118 47.619 32.64 6.88 36.52 3.36
3995 5355 1.881973 TGTTGCATGCAAGAGAAGGAC 59.118 47.619 32.64 19.31 36.52 3.85
3996 5356 1.135859 GTTGCATGCAAGAGAAGGACG 60.136 52.381 32.64 0.00 36.52 4.79
3997 5357 0.035317 TGCATGCAAGAGAAGGACGT 59.965 50.000 20.30 0.00 0.00 4.34
3998 5358 0.445436 GCATGCAAGAGAAGGACGTG 59.555 55.000 14.21 0.00 0.00 4.49
3999 5359 1.081892 CATGCAAGAGAAGGACGTGG 58.918 55.000 0.00 0.00 0.00 4.94
4000 5360 0.687354 ATGCAAGAGAAGGACGTGGT 59.313 50.000 0.00 0.00 0.00 4.16
4001 5361 0.249868 TGCAAGAGAAGGACGTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
4002 5362 0.951040 GCAAGAGAAGGACGTGGTGG 60.951 60.000 0.00 0.00 0.00 4.61
4003 5363 0.679505 CAAGAGAAGGACGTGGTGGA 59.320 55.000 0.00 0.00 0.00 4.02
4004 5364 1.276421 CAAGAGAAGGACGTGGTGGAT 59.724 52.381 0.00 0.00 0.00 3.41
4005 5365 1.187087 AGAGAAGGACGTGGTGGATC 58.813 55.000 0.00 0.00 0.00 3.36
4006 5366 0.175989 GAGAAGGACGTGGTGGATCC 59.824 60.000 4.20 4.20 0.00 3.36
4007 5367 0.544357 AGAAGGACGTGGTGGATCCA 60.544 55.000 11.44 11.44 45.01 3.41
4016 5376 1.933021 TGGTGGATCCACTTAGACGT 58.067 50.000 37.26 0.00 45.52 4.34
4017 5377 2.253610 TGGTGGATCCACTTAGACGTT 58.746 47.619 37.26 0.00 45.52 3.99
4018 5378 2.028476 TGGTGGATCCACTTAGACGTTG 60.028 50.000 37.26 0.00 45.52 4.10
4019 5379 2.232941 GGTGGATCCACTTAGACGTTGA 59.767 50.000 37.26 0.00 45.52 3.18
4020 5380 3.512680 GTGGATCCACTTAGACGTTGAG 58.487 50.000 33.47 0.00 43.12 3.02
4021 5381 2.094182 TGGATCCACTTAGACGTTGAGC 60.094 50.000 11.44 0.00 0.00 4.26
4022 5382 2.541556 GATCCACTTAGACGTTGAGCC 58.458 52.381 0.00 0.00 0.00 4.70
4023 5383 0.606604 TCCACTTAGACGTTGAGCCC 59.393 55.000 0.00 0.00 0.00 5.19
4024 5384 0.320374 CCACTTAGACGTTGAGCCCA 59.680 55.000 0.00 0.00 0.00 5.36
4025 5385 1.429463 CACTTAGACGTTGAGCCCAC 58.571 55.000 0.00 0.00 0.00 4.61
4026 5386 1.045407 ACTTAGACGTTGAGCCCACA 58.955 50.000 0.00 0.00 0.00 4.17
4027 5387 1.000955 ACTTAGACGTTGAGCCCACAG 59.999 52.381 0.00 0.00 0.00 3.66
4028 5388 0.320374 TTAGACGTTGAGCCCACAGG 59.680 55.000 0.00 0.00 0.00 4.00
4040 5400 1.668419 CCCACAGGCTAGTATGTTGC 58.332 55.000 0.00 0.00 0.00 4.17
4041 5401 1.065491 CCCACAGGCTAGTATGTTGCA 60.065 52.381 0.00 0.00 0.00 4.08
4042 5402 2.421952 CCCACAGGCTAGTATGTTGCAT 60.422 50.000 0.00 0.00 0.00 3.96
4043 5403 2.615447 CCACAGGCTAGTATGTTGCATG 59.385 50.000 0.00 0.00 43.01 4.06
4044 5404 3.634397 ACAGGCTAGTATGTTGCATGT 57.366 42.857 0.00 0.00 44.95 3.21
4045 5405 3.310774 CACAGGCTAGTATGTTGCATGTC 59.689 47.826 1.55 0.00 46.43 3.06
4046 5406 3.055167 ACAGGCTAGTATGTTGCATGTCA 60.055 43.478 0.00 0.00 46.43 3.58
4047 5407 3.558829 CAGGCTAGTATGTTGCATGTCAG 59.441 47.826 0.00 0.00 34.40 3.51
4048 5408 3.198635 AGGCTAGTATGTTGCATGTCAGT 59.801 43.478 0.00 0.00 0.00 3.41
4049 5409 3.941483 GGCTAGTATGTTGCATGTCAGTT 59.059 43.478 0.00 0.00 0.00 3.16
4050 5410 4.396166 GGCTAGTATGTTGCATGTCAGTTT 59.604 41.667 0.00 0.00 0.00 2.66
4051 5411 5.106157 GGCTAGTATGTTGCATGTCAGTTTT 60.106 40.000 0.00 0.00 0.00 2.43
4052 5412 6.381801 GCTAGTATGTTGCATGTCAGTTTTT 58.618 36.000 0.00 0.00 0.00 1.94
4068 5428 2.350899 TTTTTCCTGCGCATGTCATG 57.649 45.000 12.24 8.56 0.00 3.07
4079 5439 2.184385 CATGTCATGCGCTCTTTTCC 57.816 50.000 9.73 0.00 0.00 3.13
4080 5440 1.098050 ATGTCATGCGCTCTTTTCCC 58.902 50.000 9.73 0.00 0.00 3.97
4081 5441 0.036732 TGTCATGCGCTCTTTTCCCT 59.963 50.000 9.73 0.00 0.00 4.20
4082 5442 1.168714 GTCATGCGCTCTTTTCCCTT 58.831 50.000 9.73 0.00 0.00 3.95
4083 5443 1.131315 GTCATGCGCTCTTTTCCCTTC 59.869 52.381 9.73 0.00 0.00 3.46
4084 5444 0.453390 CATGCGCTCTTTTCCCTTCC 59.547 55.000 9.73 0.00 0.00 3.46
4085 5445 0.038166 ATGCGCTCTTTTCCCTTCCA 59.962 50.000 9.73 0.00 0.00 3.53
4086 5446 0.038166 TGCGCTCTTTTCCCTTCCAT 59.962 50.000 9.73 0.00 0.00 3.41
4087 5447 0.453390 GCGCTCTTTTCCCTTCCATG 59.547 55.000 0.00 0.00 0.00 3.66
4088 5448 0.453390 CGCTCTTTTCCCTTCCATGC 59.547 55.000 0.00 0.00 0.00 4.06
4089 5449 1.844687 GCTCTTTTCCCTTCCATGCT 58.155 50.000 0.00 0.00 0.00 3.79
4090 5450 1.747924 GCTCTTTTCCCTTCCATGCTC 59.252 52.381 0.00 0.00 0.00 4.26
4091 5451 2.881403 GCTCTTTTCCCTTCCATGCTCA 60.881 50.000 0.00 0.00 0.00 4.26
4092 5452 2.751806 CTCTTTTCCCTTCCATGCTCAC 59.248 50.000 0.00 0.00 0.00 3.51
4093 5453 2.376518 TCTTTTCCCTTCCATGCTCACT 59.623 45.455 0.00 0.00 0.00 3.41
4094 5454 2.978156 TTTCCCTTCCATGCTCACTT 57.022 45.000 0.00 0.00 0.00 3.16
4095 5455 2.978156 TTCCCTTCCATGCTCACTTT 57.022 45.000 0.00 0.00 0.00 2.66
4096 5456 2.978156 TCCCTTCCATGCTCACTTTT 57.022 45.000 0.00 0.00 0.00 2.27
4097 5457 4.380843 TTCCCTTCCATGCTCACTTTTA 57.619 40.909 0.00 0.00 0.00 1.52
4098 5458 4.380843 TCCCTTCCATGCTCACTTTTAA 57.619 40.909 0.00 0.00 0.00 1.52
4099 5459 4.335416 TCCCTTCCATGCTCACTTTTAAG 58.665 43.478 0.00 0.00 0.00 1.85
4100 5460 4.082125 CCCTTCCATGCTCACTTTTAAGT 58.918 43.478 0.00 0.00 40.60 2.24
4110 5470 1.892209 ACTTTTAAGTGACGGGCCAG 58.108 50.000 4.39 1.85 37.98 4.85
4111 5471 0.521735 CTTTTAAGTGACGGGCCAGC 59.478 55.000 4.39 0.00 0.00 4.85
4112 5472 0.109723 TTTTAAGTGACGGGCCAGCT 59.890 50.000 4.39 0.00 0.00 4.24
4113 5473 0.321298 TTTAAGTGACGGGCCAGCTC 60.321 55.000 4.39 1.55 0.00 4.09
4114 5474 2.180159 TTAAGTGACGGGCCAGCTCC 62.180 60.000 4.39 0.00 0.00 4.70
4116 5476 4.021925 GTGACGGGCCAGCTCCTT 62.022 66.667 4.39 0.00 0.00 3.36
4117 5477 2.284331 TGACGGGCCAGCTCCTTA 60.284 61.111 4.39 0.00 0.00 2.69
4118 5478 1.916273 TGACGGGCCAGCTCCTTAA 60.916 57.895 4.39 0.00 0.00 1.85
4119 5479 1.271840 TGACGGGCCAGCTCCTTAAT 61.272 55.000 4.39 0.00 0.00 1.40
4120 5480 0.107165 GACGGGCCAGCTCCTTAATT 60.107 55.000 4.39 0.00 0.00 1.40
4121 5481 0.331616 ACGGGCCAGCTCCTTAATTT 59.668 50.000 4.39 0.00 0.00 1.82
4122 5482 1.562475 ACGGGCCAGCTCCTTAATTTA 59.438 47.619 4.39 0.00 0.00 1.40
4123 5483 2.025699 ACGGGCCAGCTCCTTAATTTAA 60.026 45.455 4.39 0.00 0.00 1.52
4124 5484 3.020984 CGGGCCAGCTCCTTAATTTAAA 58.979 45.455 4.39 0.00 0.00 1.52
4125 5485 3.636764 CGGGCCAGCTCCTTAATTTAAAT 59.363 43.478 4.39 0.00 0.00 1.40
4126 5486 4.261614 CGGGCCAGCTCCTTAATTTAAATC 60.262 45.833 4.39 0.00 0.00 2.17
4127 5487 4.261614 GGGCCAGCTCCTTAATTTAAATCG 60.262 45.833 4.39 0.00 0.00 3.34
4128 5488 4.338400 GGCCAGCTCCTTAATTTAAATCGT 59.662 41.667 0.00 0.00 0.00 3.73
4129 5489 5.505819 GGCCAGCTCCTTAATTTAAATCGTC 60.506 44.000 0.00 0.00 0.00 4.20
4130 5490 5.065988 GCCAGCTCCTTAATTTAAATCGTCA 59.934 40.000 0.10 0.00 0.00 4.35
4131 5491 6.238759 GCCAGCTCCTTAATTTAAATCGTCAT 60.239 38.462 0.10 0.00 0.00 3.06
4132 5492 7.134815 CCAGCTCCTTAATTTAAATCGTCATG 58.865 38.462 0.10 0.00 0.00 3.07
4133 5493 6.634436 CAGCTCCTTAATTTAAATCGTCATGC 59.366 38.462 0.10 3.58 0.00 4.06
4134 5494 6.318648 AGCTCCTTAATTTAAATCGTCATGCA 59.681 34.615 0.10 0.00 0.00 3.96
4135 5495 7.013655 AGCTCCTTAATTTAAATCGTCATGCAT 59.986 33.333 0.10 0.00 0.00 3.96
4136 5496 8.289618 GCTCCTTAATTTAAATCGTCATGCATA 58.710 33.333 0.00 0.00 0.00 3.14
4138 5498 9.944663 TCCTTAATTTAAATCGTCATGCATAAC 57.055 29.630 0.00 0.00 0.00 1.89
4139 5499 9.950680 CCTTAATTTAAATCGTCATGCATAACT 57.049 29.630 0.00 0.00 0.00 2.24
4142 5502 8.841444 AATTTAAATCGTCATGCATAACTGAC 57.159 30.769 0.00 3.14 38.69 3.51
4146 5506 2.726555 GTCATGCATAACTGACGCTG 57.273 50.000 0.00 0.00 33.14 5.18
4147 5507 1.009078 TCATGCATAACTGACGCTGC 58.991 50.000 0.00 0.00 35.21 5.25
4148 5508 1.012086 CATGCATAACTGACGCTGCT 58.988 50.000 0.00 0.00 35.66 4.24
4149 5509 2.159114 TCATGCATAACTGACGCTGCTA 60.159 45.455 0.00 0.00 35.66 3.49
4150 5510 2.378445 TGCATAACTGACGCTGCTAA 57.622 45.000 0.00 0.00 35.66 3.09
4151 5511 2.905075 TGCATAACTGACGCTGCTAAT 58.095 42.857 0.00 0.00 35.66 1.73
4152 5512 3.270027 TGCATAACTGACGCTGCTAATT 58.730 40.909 0.00 0.00 35.66 1.40
4153 5513 4.438148 TGCATAACTGACGCTGCTAATTA 58.562 39.130 0.00 0.00 35.66 1.40
4154 5514 4.270084 TGCATAACTGACGCTGCTAATTAC 59.730 41.667 0.00 0.00 35.66 1.89
4155 5515 4.508124 GCATAACTGACGCTGCTAATTACT 59.492 41.667 0.00 0.00 0.00 2.24
4156 5516 5.557136 GCATAACTGACGCTGCTAATTACTG 60.557 44.000 0.00 0.00 0.00 2.74
4157 5517 3.594603 ACTGACGCTGCTAATTACTGT 57.405 42.857 0.00 0.00 0.00 3.55
4158 5518 3.254060 ACTGACGCTGCTAATTACTGTG 58.746 45.455 0.00 0.00 0.00 3.66
4159 5519 2.604914 CTGACGCTGCTAATTACTGTGG 59.395 50.000 0.00 0.00 0.00 4.17
4160 5520 1.933853 GACGCTGCTAATTACTGTGGG 59.066 52.381 0.00 0.00 0.00 4.61
4161 5521 1.299541 CGCTGCTAATTACTGTGGGG 58.700 55.000 0.00 0.00 0.00 4.96
4162 5522 1.680338 GCTGCTAATTACTGTGGGGG 58.320 55.000 0.00 0.00 0.00 5.40
4163 5523 1.064685 GCTGCTAATTACTGTGGGGGT 60.065 52.381 0.00 0.00 0.00 4.95
4164 5524 2.643551 CTGCTAATTACTGTGGGGGTG 58.356 52.381 0.00 0.00 0.00 4.61
4165 5525 2.238646 CTGCTAATTACTGTGGGGGTGA 59.761 50.000 0.00 0.00 0.00 4.02
4166 5526 2.645297 TGCTAATTACTGTGGGGGTGAA 59.355 45.455 0.00 0.00 0.00 3.18
4167 5527 3.014623 GCTAATTACTGTGGGGGTGAAC 58.985 50.000 0.00 0.00 0.00 3.18
4168 5528 3.560453 GCTAATTACTGTGGGGGTGAACA 60.560 47.826 0.00 0.00 0.00 3.18
4170 5530 1.809133 TTACTGTGGGGGTGAACAGA 58.191 50.000 9.63 0.00 45.43 3.41
4171 5531 1.809133 TACTGTGGGGGTGAACAGAA 58.191 50.000 9.63 0.00 45.43 3.02
4172 5532 1.149101 ACTGTGGGGGTGAACAGAAT 58.851 50.000 9.63 0.00 45.43 2.40
4173 5533 2.344592 ACTGTGGGGGTGAACAGAATA 58.655 47.619 9.63 0.00 45.43 1.75
4174 5534 2.714250 ACTGTGGGGGTGAACAGAATAA 59.286 45.455 9.63 0.00 45.43 1.40
4175 5535 3.333680 ACTGTGGGGGTGAACAGAATAAT 59.666 43.478 9.63 0.00 45.43 1.28
4176 5536 4.538490 ACTGTGGGGGTGAACAGAATAATA 59.462 41.667 9.63 0.00 45.43 0.98
4177 5537 4.850680 TGTGGGGGTGAACAGAATAATAC 58.149 43.478 0.00 0.00 0.00 1.89
4178 5538 4.538490 TGTGGGGGTGAACAGAATAATACT 59.462 41.667 0.00 0.00 0.00 2.12
4179 5539 4.881850 GTGGGGGTGAACAGAATAATACTG 59.118 45.833 0.00 0.00 40.68 2.74
4181 5541 5.727279 TGGGGGTGAACAGAATAATACTGTA 59.273 40.000 0.00 0.00 46.01 2.74
4182 5542 6.126883 TGGGGGTGAACAGAATAATACTGTAG 60.127 42.308 0.00 0.00 46.01 2.74
4183 5543 6.126854 GGGGGTGAACAGAATAATACTGTAGT 60.127 42.308 0.00 0.00 46.01 2.73
4184 5544 7.070322 GGGGGTGAACAGAATAATACTGTAGTA 59.930 40.741 0.00 0.00 46.01 1.82
4185 5545 8.648693 GGGGTGAACAGAATAATACTGTAGTAT 58.351 37.037 2.17 2.17 46.01 2.12
4220 5580 9.812347 TCATATGCATAAGGATTTTTATCTGGT 57.188 29.630 11.13 0.00 0.00 4.00
4224 5584 7.885297 TGCATAAGGATTTTTATCTGGTATGC 58.115 34.615 0.00 0.00 40.92 3.14
4225 5585 7.505248 TGCATAAGGATTTTTATCTGGTATGCA 59.495 33.333 17.11 17.11 45.30 3.96
4226 5586 8.526147 GCATAAGGATTTTTATCTGGTATGCAT 58.474 33.333 3.79 3.79 40.48 3.96
4230 5590 9.646522 AAGGATTTTTATCTGGTATGCATAACT 57.353 29.630 21.96 5.32 0.00 2.24
4235 5595 9.688091 TTTTTATCTGGTATGCATAACTAACCA 57.312 29.630 21.96 18.63 37.88 3.67
4236 5596 8.671384 TTTATCTGGTATGCATAACTAACCAC 57.329 34.615 21.96 3.42 35.34 4.16
4237 5597 5.950544 TCTGGTATGCATAACTAACCACT 57.049 39.130 21.96 0.00 35.34 4.00
4238 5598 7.612065 ATCTGGTATGCATAACTAACCACTA 57.388 36.000 21.96 10.04 35.34 2.74
4239 5599 7.426606 TCTGGTATGCATAACTAACCACTAA 57.573 36.000 21.96 5.19 35.34 2.24
4240 5600 8.029782 TCTGGTATGCATAACTAACCACTAAT 57.970 34.615 21.96 0.00 35.34 1.73
4241 5601 8.148351 TCTGGTATGCATAACTAACCACTAATC 58.852 37.037 21.96 0.00 35.34 1.75
4242 5602 7.797062 TGGTATGCATAACTAACCACTAATCA 58.203 34.615 21.96 0.00 35.34 2.57
4243 5603 7.713507 TGGTATGCATAACTAACCACTAATCAC 59.286 37.037 21.96 0.00 35.34 3.06
4244 5604 7.713507 GGTATGCATAACTAACCACTAATCACA 59.286 37.037 14.74 0.00 0.00 3.58
4245 5605 9.104965 GTATGCATAACTAACCACTAATCACAA 57.895 33.333 8.28 0.00 0.00 3.33
4246 5606 7.609760 TGCATAACTAACCACTAATCACAAG 57.390 36.000 0.00 0.00 0.00 3.16
4247 5607 7.165485 TGCATAACTAACCACTAATCACAAGT 58.835 34.615 0.00 0.00 0.00 3.16
4248 5608 8.315482 TGCATAACTAACCACTAATCACAAGTA 58.685 33.333 0.00 0.00 0.00 2.24
4249 5609 9.326413 GCATAACTAACCACTAATCACAAGTAT 57.674 33.333 0.00 0.00 0.00 2.12
4276 5636 9.716556 AAATAGTCATAAGAACTCTAGGAAGGA 57.283 33.333 0.00 0.00 0.00 3.36
4277 5637 9.890915 AATAGTCATAAGAACTCTAGGAAGGAT 57.109 33.333 0.00 0.00 0.00 3.24
4278 5638 7.595819 AGTCATAAGAACTCTAGGAAGGATG 57.404 40.000 0.00 0.00 0.00 3.51
4279 5639 7.129425 AGTCATAAGAACTCTAGGAAGGATGT 58.871 38.462 0.00 0.00 0.00 3.06
4280 5640 7.069331 AGTCATAAGAACTCTAGGAAGGATGTG 59.931 40.741 0.00 0.00 0.00 3.21
4281 5641 6.897966 TCATAAGAACTCTAGGAAGGATGTGT 59.102 38.462 0.00 0.00 0.00 3.72
4282 5642 7.400339 TCATAAGAACTCTAGGAAGGATGTGTT 59.600 37.037 0.00 0.00 0.00 3.32
4283 5643 6.441088 AAGAACTCTAGGAAGGATGTGTTT 57.559 37.500 0.00 0.00 0.00 2.83
4284 5644 5.799213 AGAACTCTAGGAAGGATGTGTTTG 58.201 41.667 0.00 0.00 0.00 2.93
4285 5645 5.544176 AGAACTCTAGGAAGGATGTGTTTGA 59.456 40.000 0.00 0.00 0.00 2.69
4286 5646 5.825593 ACTCTAGGAAGGATGTGTTTGAA 57.174 39.130 0.00 0.00 0.00 2.69
4287 5647 5.552178 ACTCTAGGAAGGATGTGTTTGAAC 58.448 41.667 0.00 0.00 0.00 3.18
4288 5648 5.308237 ACTCTAGGAAGGATGTGTTTGAACT 59.692 40.000 0.00 0.00 0.00 3.01
4289 5649 6.183361 ACTCTAGGAAGGATGTGTTTGAACTT 60.183 38.462 0.00 0.00 0.00 2.66
4290 5650 6.601332 TCTAGGAAGGATGTGTTTGAACTTT 58.399 36.000 0.00 0.00 0.00 2.66
4291 5651 7.060421 TCTAGGAAGGATGTGTTTGAACTTTT 58.940 34.615 0.00 0.00 0.00 2.27
4292 5652 5.906073 AGGAAGGATGTGTTTGAACTTTTG 58.094 37.500 0.00 0.00 0.00 2.44
4293 5653 4.507756 GGAAGGATGTGTTTGAACTTTTGC 59.492 41.667 0.00 0.00 0.00 3.68
4294 5654 4.734398 AGGATGTGTTTGAACTTTTGCA 57.266 36.364 0.00 0.00 0.00 4.08
4295 5655 5.280654 AGGATGTGTTTGAACTTTTGCAT 57.719 34.783 0.00 0.00 0.00 3.96
4296 5656 5.051816 AGGATGTGTTTGAACTTTTGCATG 58.948 37.500 0.00 0.00 0.00 4.06
4297 5657 5.049167 GGATGTGTTTGAACTTTTGCATGA 58.951 37.500 0.00 0.00 0.00 3.07
4298 5658 5.523188 GGATGTGTTTGAACTTTTGCATGAA 59.477 36.000 0.00 0.00 0.00 2.57
4299 5659 6.036953 GGATGTGTTTGAACTTTTGCATGAAA 59.963 34.615 0.00 0.00 0.00 2.69
4300 5660 6.791887 TGTGTTTGAACTTTTGCATGAAAA 57.208 29.167 0.00 0.00 32.44 2.29
4301 5661 7.375106 TGTGTTTGAACTTTTGCATGAAAAT 57.625 28.000 0.00 0.00 32.98 1.82
4302 5662 7.462731 TGTGTTTGAACTTTTGCATGAAAATC 58.537 30.769 0.00 0.00 32.98 2.17
4303 5663 7.118825 TGTGTTTGAACTTTTGCATGAAAATCA 59.881 29.630 0.00 0.00 32.98 2.57
4304 5664 7.637132 GTGTTTGAACTTTTGCATGAAAATCAG 59.363 33.333 0.00 0.00 32.98 2.90
4305 5665 7.548427 TGTTTGAACTTTTGCATGAAAATCAGA 59.452 29.630 0.00 0.00 32.98 3.27
4306 5666 8.389603 GTTTGAACTTTTGCATGAAAATCAGAA 58.610 29.630 0.00 0.00 32.98 3.02
4307 5667 7.703298 TGAACTTTTGCATGAAAATCAGAAG 57.297 32.000 0.00 0.00 32.98 2.85
4308 5668 7.490840 TGAACTTTTGCATGAAAATCAGAAGA 58.509 30.769 0.00 0.00 32.98 2.87
4309 5669 7.980662 TGAACTTTTGCATGAAAATCAGAAGAA 59.019 29.630 0.00 0.00 32.98 2.52
4310 5670 7.704789 ACTTTTGCATGAAAATCAGAAGAAC 57.295 32.000 0.00 0.00 32.98 3.01
4311 5671 7.495055 ACTTTTGCATGAAAATCAGAAGAACT 58.505 30.769 0.00 0.00 32.98 3.01
4312 5672 7.983484 ACTTTTGCATGAAAATCAGAAGAACTT 59.017 29.630 0.00 0.00 32.98 2.66
4313 5673 8.721019 TTTTGCATGAAAATCAGAAGAACTTT 57.279 26.923 0.00 0.00 0.00 2.66
4314 5674 8.721019 TTTGCATGAAAATCAGAAGAACTTTT 57.279 26.923 0.00 0.00 0.00 2.27
4315 5675 7.703298 TGCATGAAAATCAGAAGAACTTTTG 57.297 32.000 0.00 0.00 0.00 2.44
4316 5676 7.490840 TGCATGAAAATCAGAAGAACTTTTGA 58.509 30.769 9.55 9.55 37.94 2.69
4317 5677 7.980662 TGCATGAAAATCAGAAGAACTTTTGAA 59.019 29.630 10.83 0.00 37.27 2.69
4318 5678 8.819974 GCATGAAAATCAGAAGAACTTTTGAAA 58.180 29.630 10.83 0.00 37.27 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 296 1.822371 GGTCACCACACCAACAACTTT 59.178 47.619 0.00 0.00 36.32 2.66
1405 2689 3.195002 GCAATGCCGCTACGAGCA 61.195 61.111 0.00 5.80 42.58 4.26
1412 2696 2.046892 ACGAGAAGCAATGCCGCT 60.047 55.556 0.00 0.00 46.67 5.52
2383 3703 1.623973 CGTCTTCCGGAAAAGGTCGC 61.624 60.000 19.39 2.71 0.00 5.19
3110 4431 1.443194 GCCGTCGAGCGTGTTCTTA 60.443 57.895 0.00 0.00 39.32 2.10
3158 4479 1.283321 GCATCCTGGACCTTCTCCTTT 59.717 52.381 0.00 0.00 40.26 3.11
3329 4650 1.882623 TCATCATGATCGTCCTCTCCG 59.117 52.381 4.86 0.00 0.00 4.63
3331 4652 4.278170 AGAGTTCATCATGATCGTCCTCTC 59.722 45.833 4.86 8.14 0.00 3.20
3394 4718 0.823356 AGCAAGCTCCCTCGCAAAAA 60.823 50.000 0.00 0.00 0.00 1.94
3395 4719 0.036164 TAGCAAGCTCCCTCGCAAAA 59.964 50.000 0.00 0.00 0.00 2.44
3396 4720 0.391661 CTAGCAAGCTCCCTCGCAAA 60.392 55.000 0.00 0.00 0.00 3.68
3397 4721 1.219124 CTAGCAAGCTCCCTCGCAA 59.781 57.895 0.00 0.00 0.00 4.85
3398 4722 1.045350 ATCTAGCAAGCTCCCTCGCA 61.045 55.000 0.00 0.00 0.00 5.10
3399 4723 0.319469 GATCTAGCAAGCTCCCTCGC 60.319 60.000 0.00 0.00 0.00 5.03
3400 4724 1.327303 AGATCTAGCAAGCTCCCTCG 58.673 55.000 0.00 0.00 0.00 4.63
3401 4725 3.836365 AAAGATCTAGCAAGCTCCCTC 57.164 47.619 0.00 0.00 0.00 4.30
3402 4726 3.265479 ACAAAAGATCTAGCAAGCTCCCT 59.735 43.478 0.00 0.00 0.00 4.20
3403 4727 3.615155 ACAAAAGATCTAGCAAGCTCCC 58.385 45.455 0.00 0.00 0.00 4.30
3404 4728 6.934048 AATACAAAAGATCTAGCAAGCTCC 57.066 37.500 0.00 0.00 0.00 4.70
3405 4729 8.655651 AGTAATACAAAAGATCTAGCAAGCTC 57.344 34.615 0.00 0.00 0.00 4.09
3482 4818 9.959721 ACATCACAAGTTTATATTACAGGAAGT 57.040 29.630 0.00 0.00 0.00 3.01
3548 4884 7.610580 AACAAAGAGATTGGGGAAAATTACA 57.389 32.000 0.00 0.00 43.66 2.41
3619 4967 4.994852 GGATAGTGAGCAAGTACACACAAA 59.005 41.667 0.00 0.00 39.18 2.83
3632 4982 4.433615 TGACGAGAATTTGGATAGTGAGC 58.566 43.478 0.00 0.00 0.00 4.26
3673 5023 1.092348 GGGGCGGTCACTACAAATTC 58.908 55.000 0.00 0.00 0.00 2.17
3674 5024 0.323087 GGGGGCGGTCACTACAAATT 60.323 55.000 0.00 0.00 0.00 1.82
3675 5025 1.301954 GGGGGCGGTCACTACAAAT 59.698 57.895 0.00 0.00 0.00 2.32
3676 5026 2.751688 GGGGGCGGTCACTACAAA 59.248 61.111 0.00 0.00 0.00 2.83
3677 5027 3.697747 CGGGGGCGGTCACTACAA 61.698 66.667 0.00 0.00 0.00 2.41
3683 5033 4.896829 TTTTTGCGGGGGCGGTCA 62.897 61.111 0.00 0.00 0.00 4.02
3703 5053 9.797556 GTACTTTGGTCACTACAAATTCTTTTT 57.202 29.630 0.00 0.00 37.22 1.94
3704 5054 9.185680 AGTACTTTGGTCACTACAAATTCTTTT 57.814 29.630 0.00 0.00 37.22 2.27
3705 5055 8.747538 AGTACTTTGGTCACTACAAATTCTTT 57.252 30.769 0.00 0.00 37.22 2.52
3706 5056 7.990886 TGAGTACTTTGGTCACTACAAATTCTT 59.009 33.333 0.00 0.00 37.22 2.52
3707 5057 7.506114 TGAGTACTTTGGTCACTACAAATTCT 58.494 34.615 0.00 0.00 37.22 2.40
3736 5086 3.123804 GCTCGAAAAGTCAACTCTCACA 58.876 45.455 0.00 0.00 0.00 3.58
3738 5088 3.452755 TGCTCGAAAAGTCAACTCTCA 57.547 42.857 0.00 0.00 0.00 3.27
3746 5096 8.728088 TTTTTGAGATAAATGCTCGAAAAGTC 57.272 30.769 12.37 0.00 44.62 3.01
3773 5129 3.737559 ATCTAAGCCCACCATGTGAAA 57.262 42.857 0.00 0.00 35.23 2.69
3783 5139 2.879756 GCAAGTGTCCAATCTAAGCCCA 60.880 50.000 0.00 0.00 0.00 5.36
3803 5159 1.686325 TTGGAGGGGCGATAGTCTGC 61.686 60.000 0.00 0.00 43.22 4.26
3804 5160 0.830648 TTTGGAGGGGCGATAGTCTG 59.169 55.000 0.00 0.00 43.22 3.51
3812 5168 0.679640 TATGCTTGTTTGGAGGGGCG 60.680 55.000 0.00 0.00 0.00 6.13
3844 5200 7.760794 TCAGCAACCATAAAATCAATGCTTAAG 59.239 33.333 0.00 0.00 40.40 1.85
3846 5202 7.167924 TCAGCAACCATAAAATCAATGCTTA 57.832 32.000 0.00 0.00 40.40 3.09
3847 5203 6.040209 TCAGCAACCATAAAATCAATGCTT 57.960 33.333 0.00 0.00 40.40 3.91
3848 5204 5.394883 CCTCAGCAACCATAAAATCAATGCT 60.395 40.000 0.00 0.00 42.90 3.79
3849 5205 4.807304 CCTCAGCAACCATAAAATCAATGC 59.193 41.667 0.00 0.00 0.00 3.56
3850 5206 5.808540 CACCTCAGCAACCATAAAATCAATG 59.191 40.000 0.00 0.00 0.00 2.82
3910 5270 3.109619 GCATGAAACACGAACGGAAAAA 58.890 40.909 0.00 0.00 0.00 1.94
3911 5271 2.722071 GCATGAAACACGAACGGAAAA 58.278 42.857 0.00 0.00 0.00 2.29
3912 5272 1.333347 CGCATGAAACACGAACGGAAA 60.333 47.619 0.00 0.00 0.00 3.13
3913 5273 0.233590 CGCATGAAACACGAACGGAA 59.766 50.000 0.00 0.00 0.00 4.30
3914 5274 1.856688 CGCATGAAACACGAACGGA 59.143 52.632 0.00 0.00 0.00 4.69
3915 5275 1.792057 GCGCATGAAACACGAACGG 60.792 57.895 0.30 0.00 0.00 4.44
3916 5276 1.054348 CTGCGCATGAAACACGAACG 61.054 55.000 12.24 0.00 0.00 3.95
3917 5277 1.330080 GCTGCGCATGAAACACGAAC 61.330 55.000 12.24 0.00 0.00 3.95
3918 5278 1.082169 GCTGCGCATGAAACACGAA 60.082 52.632 12.24 0.00 0.00 3.85
3919 5279 2.555782 GCTGCGCATGAAACACGA 59.444 55.556 12.24 0.00 0.00 4.35
3920 5280 2.762672 TTCGCTGCGCATGAAACACG 62.763 55.000 18.65 6.74 0.00 4.49
3921 5281 0.660005 TTTCGCTGCGCATGAAACAC 60.660 50.000 25.28 5.61 0.00 3.32
3922 5282 0.029967 TTTTCGCTGCGCATGAAACA 59.970 45.000 27.54 19.05 31.81 2.83
3923 5283 1.318491 GATTTTCGCTGCGCATGAAAC 59.682 47.619 27.54 17.99 31.81 2.78
3924 5284 1.616620 GATTTTCGCTGCGCATGAAA 58.383 45.000 25.28 25.28 0.00 2.69
3925 5285 0.179166 GGATTTTCGCTGCGCATGAA 60.179 50.000 18.65 15.99 0.00 2.57
3926 5286 1.304509 TGGATTTTCGCTGCGCATGA 61.305 50.000 18.65 9.83 0.00 3.07
3927 5287 1.135699 GTGGATTTTCGCTGCGCATG 61.136 55.000 18.65 7.06 0.00 4.06
3928 5288 1.137404 GTGGATTTTCGCTGCGCAT 59.863 52.632 18.65 9.02 0.00 4.73
3929 5289 2.257302 TGTGGATTTTCGCTGCGCA 61.257 52.632 18.65 10.98 0.00 6.09
3930 5290 1.797537 GTGTGGATTTTCGCTGCGC 60.798 57.895 18.65 0.00 0.00 6.09
3931 5291 1.154225 GGTGTGGATTTTCGCTGCG 60.154 57.895 17.25 17.25 0.00 5.18
3932 5292 1.154225 CGGTGTGGATTTTCGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
3933 5293 0.591170 AACGGTGTGGATTTTCGCTG 59.409 50.000 0.00 0.00 0.00 5.18
3934 5294 2.172851 TAACGGTGTGGATTTTCGCT 57.827 45.000 0.00 0.00 0.00 4.93
3935 5295 3.481112 AATAACGGTGTGGATTTTCGC 57.519 42.857 0.00 0.00 0.00 4.70
3936 5296 5.037015 TCAAATAACGGTGTGGATTTTCG 57.963 39.130 0.00 0.00 0.00 3.46
3937 5297 5.288472 GCATCAAATAACGGTGTGGATTTTC 59.712 40.000 0.00 0.00 0.00 2.29
3938 5298 5.167845 GCATCAAATAACGGTGTGGATTTT 58.832 37.500 0.00 0.00 0.00 1.82
3939 5299 4.219507 TGCATCAAATAACGGTGTGGATTT 59.780 37.500 0.00 0.00 0.00 2.17
3940 5300 3.761218 TGCATCAAATAACGGTGTGGATT 59.239 39.130 0.00 0.00 0.00 3.01
3941 5301 3.351740 TGCATCAAATAACGGTGTGGAT 58.648 40.909 0.00 0.00 0.00 3.41
3942 5302 2.784347 TGCATCAAATAACGGTGTGGA 58.216 42.857 0.00 0.00 0.00 4.02
3943 5303 3.781079 ATGCATCAAATAACGGTGTGG 57.219 42.857 0.00 0.00 0.00 4.17
3944 5304 7.022979 CCATATATGCATCAAATAACGGTGTG 58.977 38.462 0.19 0.00 0.00 3.82
3945 5305 6.939730 TCCATATATGCATCAAATAACGGTGT 59.060 34.615 0.19 0.00 0.00 4.16
3946 5306 7.376435 TCCATATATGCATCAAATAACGGTG 57.624 36.000 0.19 0.00 0.00 4.94
3947 5307 7.828717 TGATCCATATATGCATCAAATAACGGT 59.171 33.333 15.59 0.00 0.00 4.83
3948 5308 8.212317 TGATCCATATATGCATCAAATAACGG 57.788 34.615 15.59 1.77 0.00 4.44
3949 5309 8.886719 ACTGATCCATATATGCATCAAATAACG 58.113 33.333 17.93 9.40 0.00 3.18
3950 5310 9.999009 CACTGATCCATATATGCATCAAATAAC 57.001 33.333 17.93 0.00 0.00 1.89
3951 5311 9.743581 ACACTGATCCATATATGCATCAAATAA 57.256 29.630 17.93 0.00 0.00 1.40
3952 5312 9.743581 AACACTGATCCATATATGCATCAAATA 57.256 29.630 17.93 0.00 0.00 1.40
3953 5313 8.520351 CAACACTGATCCATATATGCATCAAAT 58.480 33.333 17.93 8.49 0.00 2.32
3954 5314 7.522562 GCAACACTGATCCATATATGCATCAAA 60.523 37.037 17.93 0.00 0.00 2.69
3955 5315 6.072342 GCAACACTGATCCATATATGCATCAA 60.072 38.462 17.93 5.14 0.00 2.57
3956 5316 5.413523 GCAACACTGATCCATATATGCATCA 59.586 40.000 16.71 16.71 0.00 3.07
3957 5317 5.413523 TGCAACACTGATCCATATATGCATC 59.586 40.000 9.38 9.38 36.46 3.91
3958 5318 5.318630 TGCAACACTGATCCATATATGCAT 58.681 37.500 3.79 3.79 36.46 3.96
3959 5319 4.716794 TGCAACACTGATCCATATATGCA 58.283 39.130 7.24 0.00 38.78 3.96
3960 5320 5.637809 CATGCAACACTGATCCATATATGC 58.362 41.667 7.24 0.00 0.00 3.14
3961 5321 5.182380 TGCATGCAACACTGATCCATATATG 59.818 40.000 20.30 5.68 0.00 1.78
3962 5322 5.318630 TGCATGCAACACTGATCCATATAT 58.681 37.500 20.30 0.00 0.00 0.86
3963 5323 4.716794 TGCATGCAACACTGATCCATATA 58.283 39.130 20.30 0.00 0.00 0.86
3964 5324 3.558033 TGCATGCAACACTGATCCATAT 58.442 40.909 20.30 0.00 0.00 1.78
3965 5325 3.002038 TGCATGCAACACTGATCCATA 57.998 42.857 20.30 0.00 0.00 2.74
3966 5326 1.842052 TGCATGCAACACTGATCCAT 58.158 45.000 20.30 0.00 0.00 3.41
3967 5327 1.542472 CTTGCATGCAACACTGATCCA 59.458 47.619 28.80 5.07 0.00 3.41
3968 5328 1.814394 TCTTGCATGCAACACTGATCC 59.186 47.619 28.80 0.00 0.00 3.36
3969 5329 2.745821 TCTCTTGCATGCAACACTGATC 59.254 45.455 28.80 0.00 0.00 2.92
3970 5330 2.786777 TCTCTTGCATGCAACACTGAT 58.213 42.857 28.80 0.00 0.00 2.90
3971 5331 2.259266 TCTCTTGCATGCAACACTGA 57.741 45.000 28.80 21.76 0.00 3.41
3972 5332 2.351447 CCTTCTCTTGCATGCAACACTG 60.351 50.000 28.80 18.79 0.00 3.66
3973 5333 1.884579 CCTTCTCTTGCATGCAACACT 59.115 47.619 28.80 0.00 0.00 3.55
3974 5334 1.881973 TCCTTCTCTTGCATGCAACAC 59.118 47.619 28.80 0.00 0.00 3.32
3975 5335 1.881973 GTCCTTCTCTTGCATGCAACA 59.118 47.619 28.80 18.41 0.00 3.33
3976 5336 1.135859 CGTCCTTCTCTTGCATGCAAC 60.136 52.381 28.80 16.08 0.00 4.17
3977 5337 1.159285 CGTCCTTCTCTTGCATGCAA 58.841 50.000 30.12 30.12 0.00 4.08
3978 5338 0.035317 ACGTCCTTCTCTTGCATGCA 59.965 50.000 18.46 18.46 0.00 3.96
3979 5339 0.445436 CACGTCCTTCTCTTGCATGC 59.555 55.000 11.82 11.82 0.00 4.06
3980 5340 1.081892 CCACGTCCTTCTCTTGCATG 58.918 55.000 0.00 0.00 0.00 4.06
3981 5341 0.687354 ACCACGTCCTTCTCTTGCAT 59.313 50.000 0.00 0.00 0.00 3.96
3982 5342 0.249868 CACCACGTCCTTCTCTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
3983 5343 0.951040 CCACCACGTCCTTCTCTTGC 60.951 60.000 0.00 0.00 0.00 4.01
3984 5344 0.679505 TCCACCACGTCCTTCTCTTG 59.320 55.000 0.00 0.00 0.00 3.02
3985 5345 1.550976 GATCCACCACGTCCTTCTCTT 59.449 52.381 0.00 0.00 0.00 2.85
3986 5346 1.187087 GATCCACCACGTCCTTCTCT 58.813 55.000 0.00 0.00 0.00 3.10
3987 5347 0.175989 GGATCCACCACGTCCTTCTC 59.824 60.000 6.95 0.00 38.79 2.87
3988 5348 0.544357 TGGATCCACCACGTCCTTCT 60.544 55.000 11.44 0.00 44.64 2.85
3989 5349 1.980052 TGGATCCACCACGTCCTTC 59.020 57.895 11.44 0.00 44.64 3.46
3990 5350 4.225860 TGGATCCACCACGTCCTT 57.774 55.556 11.44 0.00 44.64 3.36
3999 5359 3.512680 CTCAACGTCTAAGTGGATCCAC 58.487 50.000 33.72 33.72 46.50 4.02
4000 5360 2.094182 GCTCAACGTCTAAGTGGATCCA 60.094 50.000 11.44 11.44 0.00 3.41
4001 5361 2.541556 GCTCAACGTCTAAGTGGATCC 58.458 52.381 4.20 4.20 0.00 3.36
4002 5362 2.541556 GGCTCAACGTCTAAGTGGATC 58.458 52.381 0.00 0.00 0.00 3.36
4003 5363 1.207329 GGGCTCAACGTCTAAGTGGAT 59.793 52.381 0.00 0.00 0.00 3.41
4004 5364 0.606604 GGGCTCAACGTCTAAGTGGA 59.393 55.000 0.00 0.00 0.00 4.02
4005 5365 0.320374 TGGGCTCAACGTCTAAGTGG 59.680 55.000 0.00 0.00 0.00 4.00
4006 5366 1.270094 TGTGGGCTCAACGTCTAAGTG 60.270 52.381 0.00 0.00 0.00 3.16
4007 5367 1.000955 CTGTGGGCTCAACGTCTAAGT 59.999 52.381 0.00 0.00 0.00 2.24
4008 5368 1.673033 CCTGTGGGCTCAACGTCTAAG 60.673 57.143 0.00 0.00 0.00 2.18
4009 5369 0.320374 CCTGTGGGCTCAACGTCTAA 59.680 55.000 0.00 0.00 0.00 2.10
4010 5370 1.972198 CCTGTGGGCTCAACGTCTA 59.028 57.895 0.00 0.00 0.00 2.59
4011 5371 2.743718 CCTGTGGGCTCAACGTCT 59.256 61.111 0.00 0.00 0.00 4.18
4021 5381 1.065491 TGCAACATACTAGCCTGTGGG 60.065 52.381 0.00 0.00 0.00 4.61
4022 5382 2.401583 TGCAACATACTAGCCTGTGG 57.598 50.000 0.00 0.00 0.00 4.17
4023 5383 3.273434 ACATGCAACATACTAGCCTGTG 58.727 45.455 0.00 0.00 36.12 3.66
4024 5384 3.055167 TGACATGCAACATACTAGCCTGT 60.055 43.478 0.00 0.00 39.30 4.00
4025 5385 3.534554 TGACATGCAACATACTAGCCTG 58.465 45.455 0.00 0.00 0.00 4.85
4026 5386 3.198635 ACTGACATGCAACATACTAGCCT 59.801 43.478 0.00 0.00 0.00 4.58
4027 5387 3.535561 ACTGACATGCAACATACTAGCC 58.464 45.455 0.00 0.00 0.00 3.93
4028 5388 5.551760 AAACTGACATGCAACATACTAGC 57.448 39.130 0.00 0.00 0.00 3.42
4049 5409 2.350899 CATGACATGCGCAGGAAAAA 57.649 45.000 30.79 10.98 0.00 1.94
4060 5420 1.202222 GGGAAAAGAGCGCATGACATG 60.202 52.381 11.47 11.27 0.00 3.21
4061 5421 1.098050 GGGAAAAGAGCGCATGACAT 58.902 50.000 11.47 0.00 0.00 3.06
4062 5422 0.036732 AGGGAAAAGAGCGCATGACA 59.963 50.000 11.47 0.00 0.00 3.58
4063 5423 1.131315 GAAGGGAAAAGAGCGCATGAC 59.869 52.381 11.47 0.00 0.00 3.06
4064 5424 1.453155 GAAGGGAAAAGAGCGCATGA 58.547 50.000 11.47 0.00 0.00 3.07
4065 5425 0.453390 GGAAGGGAAAAGAGCGCATG 59.547 55.000 11.47 0.00 0.00 4.06
4066 5426 0.038166 TGGAAGGGAAAAGAGCGCAT 59.962 50.000 11.47 0.00 0.00 4.73
4067 5427 0.038166 ATGGAAGGGAAAAGAGCGCA 59.962 50.000 11.47 0.00 0.00 6.09
4068 5428 0.453390 CATGGAAGGGAAAAGAGCGC 59.547 55.000 0.00 0.00 0.00 5.92
4069 5429 0.453390 GCATGGAAGGGAAAAGAGCG 59.547 55.000 0.00 0.00 0.00 5.03
4070 5430 1.747924 GAGCATGGAAGGGAAAAGAGC 59.252 52.381 0.00 0.00 0.00 4.09
4071 5431 2.751806 GTGAGCATGGAAGGGAAAAGAG 59.248 50.000 0.00 0.00 0.00 2.85
4072 5432 2.376518 AGTGAGCATGGAAGGGAAAAGA 59.623 45.455 0.00 0.00 0.00 2.52
4073 5433 2.800250 AGTGAGCATGGAAGGGAAAAG 58.200 47.619 0.00 0.00 0.00 2.27
4074 5434 2.978156 AGTGAGCATGGAAGGGAAAA 57.022 45.000 0.00 0.00 0.00 2.29
4075 5435 2.978156 AAGTGAGCATGGAAGGGAAA 57.022 45.000 0.00 0.00 0.00 3.13
4076 5436 2.978156 AAAGTGAGCATGGAAGGGAA 57.022 45.000 0.00 0.00 0.00 3.97
4077 5437 2.978156 AAAAGTGAGCATGGAAGGGA 57.022 45.000 0.00 0.00 0.00 4.20
4078 5438 4.082125 ACTTAAAAGTGAGCATGGAAGGG 58.918 43.478 0.00 0.00 37.98 3.95
4091 5451 1.892209 CTGGCCCGTCACTTAAAAGT 58.108 50.000 0.00 0.00 40.60 2.66
4092 5452 0.521735 GCTGGCCCGTCACTTAAAAG 59.478 55.000 0.00 0.00 0.00 2.27
4093 5453 0.109723 AGCTGGCCCGTCACTTAAAA 59.890 50.000 0.00 0.00 0.00 1.52
4094 5454 0.321298 GAGCTGGCCCGTCACTTAAA 60.321 55.000 0.00 0.00 0.00 1.52
4095 5455 1.295423 GAGCTGGCCCGTCACTTAA 59.705 57.895 0.00 0.00 0.00 1.85
4096 5456 2.656069 GGAGCTGGCCCGTCACTTA 61.656 63.158 0.00 0.00 0.00 2.24
4097 5457 4.021925 GGAGCTGGCCCGTCACTT 62.022 66.667 0.00 0.00 0.00 3.16
4099 5459 2.180159 TTAAGGAGCTGGCCCGTCAC 62.180 60.000 0.00 0.00 0.00 3.67
4100 5460 1.271840 ATTAAGGAGCTGGCCCGTCA 61.272 55.000 0.00 0.00 0.00 4.35
4101 5461 0.107165 AATTAAGGAGCTGGCCCGTC 60.107 55.000 0.00 0.00 0.00 4.79
4102 5462 0.331616 AAATTAAGGAGCTGGCCCGT 59.668 50.000 0.00 0.00 0.00 5.28
4103 5463 2.341846 TAAATTAAGGAGCTGGCCCG 57.658 50.000 0.00 0.00 0.00 6.13
4104 5464 4.261614 CGATTTAAATTAAGGAGCTGGCCC 60.262 45.833 0.00 0.00 0.00 5.80
4105 5465 4.338400 ACGATTTAAATTAAGGAGCTGGCC 59.662 41.667 1.43 0.00 0.00 5.36
4106 5466 5.065988 TGACGATTTAAATTAAGGAGCTGGC 59.934 40.000 1.43 0.00 0.00 4.85
4107 5467 6.677781 TGACGATTTAAATTAAGGAGCTGG 57.322 37.500 1.43 0.00 0.00 4.85
4108 5468 6.634436 GCATGACGATTTAAATTAAGGAGCTG 59.366 38.462 1.43 0.00 0.00 4.24
4109 5469 6.318648 TGCATGACGATTTAAATTAAGGAGCT 59.681 34.615 1.43 0.00 0.00 4.09
4110 5470 6.494842 TGCATGACGATTTAAATTAAGGAGC 58.505 36.000 1.43 4.71 0.00 4.70
4112 5472 9.944663 GTTATGCATGACGATTTAAATTAAGGA 57.055 29.630 10.16 0.00 0.00 3.36
4113 5473 9.950680 AGTTATGCATGACGATTTAAATTAAGG 57.049 29.630 15.16 0.00 0.00 2.69
4116 5476 9.929722 GTCAGTTATGCATGACGATTTAAATTA 57.070 29.630 15.16 0.00 36.76 1.40
4117 5477 8.841444 GTCAGTTATGCATGACGATTTAAATT 57.159 30.769 15.16 0.00 36.76 1.82
4127 5487 1.267732 GCAGCGTCAGTTATGCATGAC 60.268 52.381 13.46 13.46 43.05 3.06
4128 5488 1.009078 GCAGCGTCAGTTATGCATGA 58.991 50.000 10.16 0.00 43.05 3.07
4129 5489 1.012086 AGCAGCGTCAGTTATGCATG 58.988 50.000 10.16 0.00 43.05 4.06
4130 5490 2.602257 TAGCAGCGTCAGTTATGCAT 57.398 45.000 3.79 3.79 43.05 3.96
4131 5491 2.378445 TTAGCAGCGTCAGTTATGCA 57.622 45.000 0.00 0.00 43.05 3.96
4132 5492 3.951979 AATTAGCAGCGTCAGTTATGC 57.048 42.857 0.00 0.00 40.71 3.14
4133 5493 5.520288 ACAGTAATTAGCAGCGTCAGTTATG 59.480 40.000 0.00 0.00 0.00 1.90
4134 5494 5.520288 CACAGTAATTAGCAGCGTCAGTTAT 59.480 40.000 0.00 0.00 0.00 1.89
4135 5495 4.862574 CACAGTAATTAGCAGCGTCAGTTA 59.137 41.667 0.00 0.00 0.00 2.24
4136 5496 3.679980 CACAGTAATTAGCAGCGTCAGTT 59.320 43.478 0.00 0.00 0.00 3.16
4137 5497 3.254060 CACAGTAATTAGCAGCGTCAGT 58.746 45.455 0.00 0.00 0.00 3.41
4138 5498 2.604914 CCACAGTAATTAGCAGCGTCAG 59.395 50.000 0.00 0.00 0.00 3.51
4139 5499 2.616960 CCACAGTAATTAGCAGCGTCA 58.383 47.619 0.00 0.00 0.00 4.35
4140 5500 1.933853 CCCACAGTAATTAGCAGCGTC 59.066 52.381 0.00 0.00 0.00 5.19
4141 5501 1.406887 CCCCACAGTAATTAGCAGCGT 60.407 52.381 0.00 0.00 0.00 5.07
4142 5502 1.299541 CCCCACAGTAATTAGCAGCG 58.700 55.000 0.00 0.00 0.00 5.18
4143 5503 1.064685 ACCCCCACAGTAATTAGCAGC 60.065 52.381 0.00 0.00 0.00 5.25
4144 5504 2.238646 TCACCCCCACAGTAATTAGCAG 59.761 50.000 0.00 0.00 0.00 4.24
4145 5505 2.270858 TCACCCCCACAGTAATTAGCA 58.729 47.619 0.00 0.00 0.00 3.49
4146 5506 3.014623 GTTCACCCCCACAGTAATTAGC 58.985 50.000 0.00 0.00 0.00 3.09
4147 5507 4.019681 TCTGTTCACCCCCACAGTAATTAG 60.020 45.833 0.00 0.00 41.16 1.73
4148 5508 3.911260 TCTGTTCACCCCCACAGTAATTA 59.089 43.478 0.00 0.00 41.16 1.40
4149 5509 2.714250 TCTGTTCACCCCCACAGTAATT 59.286 45.455 0.00 0.00 41.16 1.40
4150 5510 2.344592 TCTGTTCACCCCCACAGTAAT 58.655 47.619 0.00 0.00 41.16 1.89
4151 5511 1.809133 TCTGTTCACCCCCACAGTAA 58.191 50.000 0.00 0.00 41.16 2.24
4152 5512 1.809133 TTCTGTTCACCCCCACAGTA 58.191 50.000 0.00 0.00 41.16 2.74
4153 5513 1.149101 ATTCTGTTCACCCCCACAGT 58.851 50.000 0.00 0.00 41.16 3.55
4154 5514 3.433306 TTATTCTGTTCACCCCCACAG 57.567 47.619 0.00 0.00 41.65 3.66
4155 5515 4.538490 AGTATTATTCTGTTCACCCCCACA 59.462 41.667 0.00 0.00 0.00 4.17
4156 5516 4.881850 CAGTATTATTCTGTTCACCCCCAC 59.118 45.833 0.00 0.00 0.00 4.61
4157 5517 4.538490 ACAGTATTATTCTGTTCACCCCCA 59.462 41.667 0.00 0.00 42.50 4.96
4158 5518 5.112129 ACAGTATTATTCTGTTCACCCCC 57.888 43.478 0.00 0.00 42.50 5.40
4159 5519 6.885922 ACTACAGTATTATTCTGTTCACCCC 58.114 40.000 9.62 0.00 42.50 4.95
4194 5554 9.812347 ACCAGATAAAAATCCTTATGCATATGA 57.188 29.630 18.58 13.40 0.00 2.15
4198 5558 8.526147 GCATACCAGATAAAAATCCTTATGCAT 58.474 33.333 3.79 3.79 39.27 3.96
4199 5559 7.505248 TGCATACCAGATAAAAATCCTTATGCA 59.495 33.333 15.32 15.32 44.19 3.96
4200 5560 7.885297 TGCATACCAGATAAAAATCCTTATGC 58.115 34.615 0.00 0.00 39.69 3.14
4204 5564 9.646522 AGTTATGCATACCAGATAAAAATCCTT 57.353 29.630 5.74 0.00 0.00 3.36
4209 5569 9.688091 TGGTTAGTTATGCATACCAGATAAAAA 57.312 29.630 13.20 0.00 34.13 1.94
4210 5570 9.116067 GTGGTTAGTTATGCATACCAGATAAAA 57.884 33.333 16.83 0.00 39.40 1.52
4211 5571 8.491134 AGTGGTTAGTTATGCATACCAGATAAA 58.509 33.333 16.83 0.00 39.40 1.40
4212 5572 8.029782 AGTGGTTAGTTATGCATACCAGATAA 57.970 34.615 16.83 5.23 39.40 1.75
4213 5573 7.612065 AGTGGTTAGTTATGCATACCAGATA 57.388 36.000 16.83 0.00 39.40 1.98
4214 5574 6.500589 AGTGGTTAGTTATGCATACCAGAT 57.499 37.500 16.83 7.70 39.40 2.90
4215 5575 5.950544 AGTGGTTAGTTATGCATACCAGA 57.049 39.130 16.83 0.00 39.40 3.86
4216 5576 7.931407 TGATTAGTGGTTAGTTATGCATACCAG 59.069 37.037 16.83 0.00 39.40 4.00
4217 5577 7.713507 GTGATTAGTGGTTAGTTATGCATACCA 59.286 37.037 13.20 13.20 36.58 3.25
4218 5578 7.713507 TGTGATTAGTGGTTAGTTATGCATACC 59.286 37.037 5.74 7.30 0.00 2.73
4219 5579 8.657074 TGTGATTAGTGGTTAGTTATGCATAC 57.343 34.615 5.74 2.14 0.00 2.39
4220 5580 9.325198 CTTGTGATTAGTGGTTAGTTATGCATA 57.675 33.333 1.16 1.16 0.00 3.14
4221 5581 7.829211 ACTTGTGATTAGTGGTTAGTTATGCAT 59.171 33.333 3.79 3.79 0.00 3.96
4222 5582 7.165485 ACTTGTGATTAGTGGTTAGTTATGCA 58.835 34.615 0.00 0.00 0.00 3.96
4223 5583 7.611213 ACTTGTGATTAGTGGTTAGTTATGC 57.389 36.000 0.00 0.00 0.00 3.14
4250 5610 9.716556 TCCTTCCTAGAGTTCTTATGACTATTT 57.283 33.333 0.00 0.00 0.00 1.40
4251 5611 9.890915 ATCCTTCCTAGAGTTCTTATGACTATT 57.109 33.333 0.00 0.00 0.00 1.73
4252 5612 9.308000 CATCCTTCCTAGAGTTCTTATGACTAT 57.692 37.037 0.00 0.00 0.00 2.12
4253 5613 8.282982 ACATCCTTCCTAGAGTTCTTATGACTA 58.717 37.037 0.00 0.00 0.00 2.59
4254 5614 7.069331 CACATCCTTCCTAGAGTTCTTATGACT 59.931 40.741 0.00 0.00 0.00 3.41
4255 5615 7.147811 ACACATCCTTCCTAGAGTTCTTATGAC 60.148 40.741 0.00 0.00 0.00 3.06
4256 5616 6.897966 ACACATCCTTCCTAGAGTTCTTATGA 59.102 38.462 0.00 0.00 0.00 2.15
4257 5617 7.118496 ACACATCCTTCCTAGAGTTCTTATG 57.882 40.000 0.00 0.00 0.00 1.90
4258 5618 7.741554 AACACATCCTTCCTAGAGTTCTTAT 57.258 36.000 0.00 0.00 0.00 1.73
4259 5619 7.234782 TCAAACACATCCTTCCTAGAGTTCTTA 59.765 37.037 0.00 0.00 0.00 2.10
4260 5620 6.043243 TCAAACACATCCTTCCTAGAGTTCTT 59.957 38.462 0.00 0.00 0.00 2.52
4261 5621 5.544176 TCAAACACATCCTTCCTAGAGTTCT 59.456 40.000 0.00 0.00 0.00 3.01
4262 5622 5.794894 TCAAACACATCCTTCCTAGAGTTC 58.205 41.667 0.00 0.00 0.00 3.01
4263 5623 5.825593 TCAAACACATCCTTCCTAGAGTT 57.174 39.130 0.00 0.00 0.00 3.01
4264 5624 5.308237 AGTTCAAACACATCCTTCCTAGAGT 59.692 40.000 0.00 0.00 0.00 3.24
4265 5625 5.799213 AGTTCAAACACATCCTTCCTAGAG 58.201 41.667 0.00 0.00 0.00 2.43
4266 5626 5.825593 AGTTCAAACACATCCTTCCTAGA 57.174 39.130 0.00 0.00 0.00 2.43
4267 5627 6.884280 AAAGTTCAAACACATCCTTCCTAG 57.116 37.500 0.00 0.00 0.00 3.02
4268 5628 6.460953 GCAAAAGTTCAAACACATCCTTCCTA 60.461 38.462 0.00 0.00 0.00 2.94
4269 5629 5.682212 GCAAAAGTTCAAACACATCCTTCCT 60.682 40.000 0.00 0.00 0.00 3.36
4270 5630 4.507756 GCAAAAGTTCAAACACATCCTTCC 59.492 41.667 0.00 0.00 0.00 3.46
4271 5631 5.108517 TGCAAAAGTTCAAACACATCCTTC 58.891 37.500 0.00 0.00 0.00 3.46
4272 5632 5.083533 TGCAAAAGTTCAAACACATCCTT 57.916 34.783 0.00 0.00 0.00 3.36
4273 5633 4.734398 TGCAAAAGTTCAAACACATCCT 57.266 36.364 0.00 0.00 0.00 3.24
4274 5634 5.049167 TCATGCAAAAGTTCAAACACATCC 58.951 37.500 0.00 0.00 0.00 3.51
4275 5635 6.586868 TTCATGCAAAAGTTCAAACACATC 57.413 33.333 0.00 0.00 0.00 3.06
4276 5636 6.981762 TTTCATGCAAAAGTTCAAACACAT 57.018 29.167 0.00 0.00 0.00 3.21
4277 5637 6.791887 TTTTCATGCAAAAGTTCAAACACA 57.208 29.167 0.00 0.00 30.07 3.72
4278 5638 7.462731 TGATTTTCATGCAAAAGTTCAAACAC 58.537 30.769 0.00 0.00 37.40 3.32
4279 5639 7.548427 TCTGATTTTCATGCAAAAGTTCAAACA 59.452 29.630 0.00 0.00 37.40 2.83
4280 5640 7.908230 TCTGATTTTCATGCAAAAGTTCAAAC 58.092 30.769 0.00 0.00 37.40 2.93
4281 5641 8.489990 TTCTGATTTTCATGCAAAAGTTCAAA 57.510 26.923 0.00 0.00 37.40 2.69
4282 5642 7.980662 TCTTCTGATTTTCATGCAAAAGTTCAA 59.019 29.630 0.00 0.00 37.40 2.69
4283 5643 7.490840 TCTTCTGATTTTCATGCAAAAGTTCA 58.509 30.769 0.00 0.00 37.40 3.18
4284 5644 7.935338 TCTTCTGATTTTCATGCAAAAGTTC 57.065 32.000 0.00 0.00 37.40 3.01
4285 5645 7.983484 AGTTCTTCTGATTTTCATGCAAAAGTT 59.017 29.630 0.00 0.00 37.40 2.66
4286 5646 7.495055 AGTTCTTCTGATTTTCATGCAAAAGT 58.505 30.769 0.00 0.00 37.40 2.66
4287 5647 7.941795 AGTTCTTCTGATTTTCATGCAAAAG 57.058 32.000 0.00 0.00 37.40 2.27
4288 5648 8.721019 AAAGTTCTTCTGATTTTCATGCAAAA 57.279 26.923 0.00 0.59 38.38 2.44
4289 5649 8.605746 CAAAAGTTCTTCTGATTTTCATGCAAA 58.394 29.630 0.00 0.00 0.00 3.68
4290 5650 7.980662 TCAAAAGTTCTTCTGATTTTCATGCAA 59.019 29.630 0.00 0.00 0.00 4.08
4291 5651 7.490840 TCAAAAGTTCTTCTGATTTTCATGCA 58.509 30.769 0.00 0.00 0.00 3.96
4292 5652 7.935338 TCAAAAGTTCTTCTGATTTTCATGC 57.065 32.000 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.