Multiple sequence alignment - TraesCS5B01G297900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G297900 chr5B 100.000 2582 0 0 1 2582 480297821 480300402 0.000000e+00 4769
1 TraesCS5B01G297900 chr5B 91.818 110 7 2 2467 2575 704989369 704989261 4.450000e-33 152
2 TraesCS5B01G297900 chr5A 91.360 2014 113 26 2 1959 505623156 505625164 0.000000e+00 2699
3 TraesCS5B01G297900 chr5A 86.423 383 23 12 1943 2310 505625177 505625545 2.410000e-105 392
4 TraesCS5B01G297900 chr5D 92.342 1123 52 11 89 1186 400292742 400293855 0.000000e+00 1567
5 TraesCS5B01G297900 chr5D 89.514 658 28 13 1652 2308 400294240 400294857 0.000000e+00 795
6 TraesCS5B01G297900 chr5D 91.816 391 23 3 1236 1618 400293848 400294237 1.050000e-148 536
7 TraesCS5B01G297900 chr5D 95.652 92 4 0 2309 2400 330119955 330119864 5.760000e-32 148
8 TraesCS5B01G297900 chr1A 80.802 1422 131 71 357 1672 560313559 560314944 0.000000e+00 983
9 TraesCS5B01G297900 chr1B 82.821 1042 96 39 357 1346 645520610 645519600 0.000000e+00 856
10 TraesCS5B01G297900 chr1B 94.898 98 5 0 2467 2564 476030853 476030756 1.240000e-33 154
11 TraesCS5B01G297900 chr1D 83.198 988 106 31 724 1692 467626525 467625579 0.000000e+00 850
12 TraesCS5B01G297900 chr1D 86.503 326 24 6 357 675 467627652 467627340 8.850000e-90 340
13 TraesCS5B01G297900 chr4D 85.283 265 31 5 1381 1645 432433841 432434097 1.520000e-67 267
14 TraesCS5B01G297900 chr7B 93.789 161 7 1 2309 2469 56385241 56385084 3.320000e-59 239
15 TraesCS5B01G297900 chr2A 91.391 151 12 1 2306 2456 768678465 768678614 3.370000e-49 206
16 TraesCS5B01G297900 chr2B 94.949 99 5 0 2467 2565 629108532 629108630 3.440000e-34 156
17 TraesCS5B01G297900 chr2B 93.204 103 7 0 2467 2569 172750179 172750077 4.450000e-33 152
18 TraesCS5B01G297900 chr3D 91.818 110 9 0 2461 2570 48070905 48071014 1.240000e-33 154
19 TraesCS5B01G297900 chr3D 90.991 111 8 2 2468 2576 603946257 603946147 5.760000e-32 148
20 TraesCS5B01G297900 chrUn 89.655 116 9 3 2466 2578 71546894 71546779 7.450000e-31 145
21 TraesCS5B01G297900 chrUn 89.655 116 9 3 2466 2578 268022474 268022359 7.450000e-31 145
22 TraesCS5B01G297900 chr7D 92.157 102 8 0 2467 2568 540413445 540413344 7.450000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G297900 chr5B 480297821 480300402 2581 False 4769.0 4769 100.0000 1 2582 1 chr5B.!!$F1 2581
1 TraesCS5B01G297900 chr5A 505623156 505625545 2389 False 1545.5 2699 88.8915 2 2310 2 chr5A.!!$F1 2308
2 TraesCS5B01G297900 chr5D 400292742 400294857 2115 False 966.0 1567 91.2240 89 2308 3 chr5D.!!$F1 2219
3 TraesCS5B01G297900 chr1A 560313559 560314944 1385 False 983.0 983 80.8020 357 1672 1 chr1A.!!$F1 1315
4 TraesCS5B01G297900 chr1B 645519600 645520610 1010 True 856.0 856 82.8210 357 1346 1 chr1B.!!$R2 989
5 TraesCS5B01G297900 chr1D 467625579 467627652 2073 True 595.0 850 84.8505 357 1692 2 chr1D.!!$R1 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.106268 TTGCCCTTTCAGTGCCTTCA 60.106 50.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 2746 0.10852 GGATCCGGCGACACTTTACA 60.109 55.0 9.3 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.892284 TGAAACTGAACCTGCTTAACCA 58.108 40.909 0.00 0.00 0.00 3.67
23 24 4.278170 TGAAACTGAACCTGCTTAACCATG 59.722 41.667 0.00 0.00 0.00 3.66
29 30 4.042311 TGAACCTGCTTAACCATGACCTTA 59.958 41.667 0.00 0.00 0.00 2.69
40 41 4.265073 ACCATGACCTTAATTCACTCTGC 58.735 43.478 0.00 0.00 0.00 4.26
42 43 4.334759 CCATGACCTTAATTCACTCTGCTG 59.665 45.833 0.00 0.00 0.00 4.41
46 47 5.221722 TGACCTTAATTCACTCTGCTGTTCT 60.222 40.000 0.00 0.00 0.00 3.01
54 55 1.133668 ACTCTGCTGTTCTTGCCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
63 64 0.185901 TCTTGCCCTTTCAGTGCCTT 59.814 50.000 0.00 0.00 0.00 4.35
65 66 0.106268 TTGCCCTTTCAGTGCCTTCA 60.106 50.000 0.00 0.00 0.00 3.02
77 85 3.813724 CAGTGCCTTCATATGGAGTGATG 59.186 47.826 10.23 0.14 0.00 3.07
80 88 4.752101 GTGCCTTCATATGGAGTGATGTAC 59.248 45.833 10.23 0.97 0.00 2.90
83 91 5.246203 GCCTTCATATGGAGTGATGTACCTA 59.754 44.000 10.23 0.00 0.00 3.08
84 92 6.573289 GCCTTCATATGGAGTGATGTACCTAG 60.573 46.154 10.23 0.00 0.00 3.02
98 106 4.901868 TGTACCTAGCGGTGAAAAAGAAT 58.098 39.130 0.00 0.00 45.18 2.40
155 163 0.107456 CATTGGTCGATGAGGAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
161 169 2.812619 CGATGAGGAGGGGGCCTTC 61.813 68.421 0.84 1.27 38.73 3.46
232 240 8.902540 TTCTTCTCTAAATAAACACAGCTTCA 57.097 30.769 0.00 0.00 0.00 3.02
234 242 6.706055 TCTCTAAATAAACACAGCTTCACG 57.294 37.500 0.00 0.00 0.00 4.35
235 243 5.637810 TCTCTAAATAAACACAGCTTCACGG 59.362 40.000 0.00 0.00 0.00 4.94
236 244 2.989422 AATAAACACAGCTTCACGGC 57.011 45.000 0.00 0.00 0.00 5.68
238 246 2.823924 TAAACACAGCTTCACGGCTA 57.176 45.000 0.00 0.00 41.00 3.93
239 247 1.512926 AAACACAGCTTCACGGCTAG 58.487 50.000 0.00 0.00 41.00 3.42
241 249 1.374631 CACAGCTTCACGGCTAGCA 60.375 57.895 18.24 0.00 41.00 3.49
242 250 1.079543 ACAGCTTCACGGCTAGCAG 60.080 57.895 18.24 15.90 41.00 4.24
247 262 1.535462 GCTTCACGGCTAGCAGAAAAA 59.465 47.619 22.16 10.69 37.35 1.94
249 264 2.543777 TCACGGCTAGCAGAAAAACT 57.456 45.000 22.16 0.00 0.00 2.66
305 320 3.009301 ACTTAGACGAATAATCCGGCG 57.991 47.619 0.00 0.00 40.56 6.46
307 322 2.983402 TAGACGAATAATCCGGCGAG 57.017 50.000 9.30 0.00 40.56 5.03
314 329 1.399714 ATAATCCGGCGAGTGTCTGA 58.600 50.000 9.30 0.00 0.00 3.27
319 334 1.078759 CCGGCGAGTGTCTGACATTC 61.079 60.000 19.76 19.76 32.30 2.67
330 345 4.919754 GTGTCTGACATTCTTTGCCATTTC 59.080 41.667 14.37 0.00 0.00 2.17
334 349 4.309099 TGACATTCTTTGCCATTTCTTGC 58.691 39.130 0.00 0.00 0.00 4.01
345 360 4.168760 GCCATTTCTTGCATGTAGTGTTC 58.831 43.478 0.00 0.00 0.00 3.18
355 370 4.632688 TGCATGTAGTGTTCATCATGTCAG 59.367 41.667 0.00 0.00 39.54 3.51
518 539 1.002544 ACCTAAGTGCTGAAGCCACTC 59.997 52.381 0.00 0.00 41.18 3.51
538 560 5.416952 CACTCATGAGCTCAAAATAAAGGGT 59.583 40.000 22.50 7.89 0.00 4.34
570 597 2.743636 TACTTGAAGTCTGAAGCCCG 57.256 50.000 0.00 0.00 0.00 6.13
716 1530 3.277142 ACTTTTACCTATTCCTGGCCG 57.723 47.619 0.00 0.00 0.00 6.13
732 1560 3.426615 TGGCCGTATCATTCCTTTTTGT 58.573 40.909 0.00 0.00 0.00 2.83
756 1584 2.639286 CTTTTCGCGTGCTTGCCT 59.361 55.556 5.77 0.00 0.00 4.75
985 1827 8.506168 TTAACTGTGCTATAAAATAGCTTGCT 57.494 30.769 17.29 0.00 40.95 3.91
1078 1936 2.754012 AGAGGAGACAGATGGAGAGG 57.246 55.000 0.00 0.00 0.00 3.69
1086 1944 0.617413 CAGATGGAGAGGTTGCCTGT 59.383 55.000 0.00 0.00 31.76 4.00
1198 2068 6.202570 GTCTCATGCCATCTAGAGATTTTGTC 59.797 42.308 0.00 0.00 39.13 3.18
1228 2113 5.078411 TCTGCCTGACTGAGAGATTTTAC 57.922 43.478 0.00 0.00 0.00 2.01
1285 2173 0.035439 GAAGACCGAGGCAATCCCAA 60.035 55.000 0.00 0.00 35.39 4.12
1346 2234 6.172630 TCTAGCTATTTGTGTTCATGCAAGA 58.827 36.000 0.00 0.00 0.00 3.02
1363 2251 2.086054 AGAAGCTAGTGGCAGTTTCG 57.914 50.000 0.00 0.00 44.79 3.46
1443 2342 1.451747 GTAGCGGGAGAGGTCGACT 60.452 63.158 16.46 0.90 0.00 4.18
1563 2462 4.537688 AGAGGAGGAATTGAGAACATGGAA 59.462 41.667 0.00 0.00 0.00 3.53
1833 2746 4.990426 CCAAAAATCTCAACGGCTGATTTT 59.010 37.500 0.00 11.86 46.10 1.82
1846 2759 3.234386 GCTGATTTTGTAAAGTGTCGCC 58.766 45.455 0.00 0.00 0.00 5.54
1868 2781 5.409826 GCCGGATCCAGAATTTATAGACTTG 59.590 44.000 13.41 0.00 0.00 3.16
1894 2807 3.665745 GTTGCACTGGAATGGAACATT 57.334 42.857 5.41 0.00 46.74 2.71
2006 2951 6.238103 CGAGCGAGTTTACACAATCCATAATT 60.238 38.462 0.00 0.00 0.00 1.40
2008 2953 7.472543 AGCGAGTTTACACAATCCATAATTTC 58.527 34.615 0.00 0.00 0.00 2.17
2009 2954 6.691388 GCGAGTTTACACAATCCATAATTTCC 59.309 38.462 0.00 0.00 0.00 3.13
2070 3020 8.166422 AGTGTCCATAGAAAAAGTTACTTTGG 57.834 34.615 11.35 7.91 33.64 3.28
2092 3050 3.520569 GTGCCAAAAGTTGTTGTGACAT 58.479 40.909 0.00 0.00 35.29 3.06
2093 3051 3.932089 GTGCCAAAAGTTGTTGTGACATT 59.068 39.130 0.00 0.00 35.29 2.71
2308 3266 2.159612 GGAATTTGCGTACTTTCCGTCC 60.160 50.000 0.00 0.00 0.00 4.79
2309 3267 1.073177 ATTTGCGTACTTTCCGTCCG 58.927 50.000 0.00 0.00 0.00 4.79
2310 3268 0.031857 TTTGCGTACTTTCCGTCCGA 59.968 50.000 0.00 0.00 0.00 4.55
2311 3269 0.244450 TTGCGTACTTTCCGTCCGAT 59.756 50.000 0.00 0.00 0.00 4.18
2312 3270 1.093972 TGCGTACTTTCCGTCCGATA 58.906 50.000 0.00 0.00 0.00 2.92
2313 3271 1.472082 TGCGTACTTTCCGTCCGATAA 59.528 47.619 0.00 0.00 0.00 1.75
2314 3272 2.094803 TGCGTACTTTCCGTCCGATAAA 60.095 45.455 0.00 0.00 0.00 1.40
2315 3273 2.533129 GCGTACTTTCCGTCCGATAAAG 59.467 50.000 10.78 10.78 36.51 1.85
2316 3274 2.533129 CGTACTTTCCGTCCGATAAAGC 59.467 50.000 11.74 0.00 34.31 3.51
2317 3275 2.019948 ACTTTCCGTCCGATAAAGCC 57.980 50.000 11.74 0.00 34.31 4.35
2318 3276 1.276989 ACTTTCCGTCCGATAAAGCCA 59.723 47.619 11.74 0.00 34.31 4.75
2319 3277 2.093128 ACTTTCCGTCCGATAAAGCCAT 60.093 45.455 11.74 0.00 34.31 4.40
2320 3278 2.702592 TTCCGTCCGATAAAGCCATT 57.297 45.000 0.00 0.00 0.00 3.16
2321 3279 2.702592 TCCGTCCGATAAAGCCATTT 57.297 45.000 0.00 0.00 0.00 2.32
2322 3280 3.823281 TCCGTCCGATAAAGCCATTTA 57.177 42.857 0.00 0.00 35.41 1.40
2323 3281 3.460103 TCCGTCCGATAAAGCCATTTAC 58.540 45.455 0.00 0.00 33.78 2.01
2324 3282 3.118702 TCCGTCCGATAAAGCCATTTACA 60.119 43.478 0.00 0.00 33.78 2.41
2325 3283 3.813166 CCGTCCGATAAAGCCATTTACAT 59.187 43.478 0.00 0.00 33.78 2.29
2326 3284 4.274950 CCGTCCGATAAAGCCATTTACATT 59.725 41.667 0.00 0.00 33.78 2.71
2327 3285 5.440685 CGTCCGATAAAGCCATTTACATTC 58.559 41.667 0.00 0.00 33.78 2.67
2328 3286 5.440685 GTCCGATAAAGCCATTTACATTCG 58.559 41.667 0.00 0.00 33.78 3.34
2329 3287 4.024387 TCCGATAAAGCCATTTACATTCGC 60.024 41.667 0.00 0.00 33.01 4.70
2330 3288 3.900116 CGATAAAGCCATTTACATTCGCG 59.100 43.478 0.00 0.00 33.78 5.87
2331 3289 4.551990 CGATAAAGCCATTTACATTCGCGT 60.552 41.667 5.77 0.00 33.78 6.01
2332 3290 3.569250 AAAGCCATTTACATTCGCGTT 57.431 38.095 5.77 0.00 0.00 4.84
2333 3291 2.825086 AGCCATTTACATTCGCGTTC 57.175 45.000 5.77 0.00 0.00 3.95
2334 3292 1.400494 AGCCATTTACATTCGCGTTCC 59.600 47.619 5.77 0.00 0.00 3.62
2335 3293 1.131504 GCCATTTACATTCGCGTTCCA 59.868 47.619 5.77 0.00 0.00 3.53
2336 3294 2.223479 GCCATTTACATTCGCGTTCCAT 60.223 45.455 5.77 0.00 0.00 3.41
2337 3295 3.617669 CCATTTACATTCGCGTTCCATC 58.382 45.455 5.77 0.00 0.00 3.51
2338 3296 3.548014 CCATTTACATTCGCGTTCCATCC 60.548 47.826 5.77 0.00 0.00 3.51
2339 3297 2.388310 TTACATTCGCGTTCCATCCA 57.612 45.000 5.77 0.00 0.00 3.41
2340 3298 1.647346 TACATTCGCGTTCCATCCAC 58.353 50.000 5.77 0.00 0.00 4.02
2341 3299 0.321210 ACATTCGCGTTCCATCCACA 60.321 50.000 5.77 0.00 0.00 4.17
2342 3300 0.374758 CATTCGCGTTCCATCCACAG 59.625 55.000 5.77 0.00 0.00 3.66
2343 3301 1.369091 ATTCGCGTTCCATCCACAGC 61.369 55.000 5.77 0.00 0.00 4.40
2344 3302 3.853330 CGCGTTCCATCCACAGCG 61.853 66.667 0.00 0.00 41.56 5.18
2345 3303 4.166011 GCGTTCCATCCACAGCGC 62.166 66.667 0.00 0.00 38.15 5.92
2346 3304 3.499737 CGTTCCATCCACAGCGCC 61.500 66.667 2.29 0.00 0.00 6.53
2347 3305 2.359850 GTTCCATCCACAGCGCCA 60.360 61.111 2.29 0.00 0.00 5.69
2348 3306 1.971167 GTTCCATCCACAGCGCCAA 60.971 57.895 2.29 0.00 0.00 4.52
2349 3307 1.001020 TTCCATCCACAGCGCCAAT 60.001 52.632 2.29 0.00 0.00 3.16
2350 3308 1.031571 TTCCATCCACAGCGCCAATC 61.032 55.000 2.29 0.00 0.00 2.67
2351 3309 1.452651 CCATCCACAGCGCCAATCT 60.453 57.895 2.29 0.00 0.00 2.40
2352 3310 1.442526 CCATCCACAGCGCCAATCTC 61.443 60.000 2.29 0.00 0.00 2.75
2353 3311 1.153086 ATCCACAGCGCCAATCTCC 60.153 57.895 2.29 0.00 0.00 3.71
2354 3312 1.913951 ATCCACAGCGCCAATCTCCA 61.914 55.000 2.29 0.00 0.00 3.86
2355 3313 2.401766 CCACAGCGCCAATCTCCAC 61.402 63.158 2.29 0.00 0.00 4.02
2356 3314 2.045926 ACAGCGCCAATCTCCACC 60.046 61.111 2.29 0.00 0.00 4.61
2357 3315 3.197790 CAGCGCCAATCTCCACCG 61.198 66.667 2.29 0.00 0.00 4.94
2361 3319 4.424711 GCCAATCTCCACCGCCCA 62.425 66.667 0.00 0.00 0.00 5.36
2362 3320 2.354729 CCAATCTCCACCGCCCAA 59.645 61.111 0.00 0.00 0.00 4.12
2363 3321 1.304052 CCAATCTCCACCGCCCAAA 60.304 57.895 0.00 0.00 0.00 3.28
2364 3322 0.897863 CCAATCTCCACCGCCCAAAA 60.898 55.000 0.00 0.00 0.00 2.44
2365 3323 0.243636 CAATCTCCACCGCCCAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
2366 3324 0.112412 AATCTCCACCGCCCAAAACT 59.888 50.000 0.00 0.00 0.00 2.66
2367 3325 0.609131 ATCTCCACCGCCCAAAACTG 60.609 55.000 0.00 0.00 0.00 3.16
2368 3326 2.909965 TCCACCGCCCAAAACTGC 60.910 61.111 0.00 0.00 0.00 4.40
2369 3327 2.912025 CCACCGCCCAAAACTGCT 60.912 61.111 0.00 0.00 0.00 4.24
2370 3328 2.644992 CACCGCCCAAAACTGCTC 59.355 61.111 0.00 0.00 0.00 4.26
2371 3329 2.192861 CACCGCCCAAAACTGCTCA 61.193 57.895 0.00 0.00 0.00 4.26
2372 3330 1.228552 ACCGCCCAAAACTGCTCAT 60.229 52.632 0.00 0.00 0.00 2.90
2373 3331 1.213537 CCGCCCAAAACTGCTCATG 59.786 57.895 0.00 0.00 0.00 3.07
2374 3332 1.243342 CCGCCCAAAACTGCTCATGA 61.243 55.000 0.00 0.00 0.00 3.07
2375 3333 0.813184 CGCCCAAAACTGCTCATGAT 59.187 50.000 0.00 0.00 0.00 2.45
2376 3334 1.202222 CGCCCAAAACTGCTCATGATC 60.202 52.381 0.00 0.00 0.00 2.92
2377 3335 1.202222 GCCCAAAACTGCTCATGATCG 60.202 52.381 0.00 0.00 0.00 3.69
2378 3336 2.358957 CCCAAAACTGCTCATGATCGA 58.641 47.619 0.00 0.00 0.00 3.59
2379 3337 2.749076 CCCAAAACTGCTCATGATCGAA 59.251 45.455 0.00 0.00 0.00 3.71
2380 3338 3.191162 CCCAAAACTGCTCATGATCGAAA 59.809 43.478 0.00 0.00 0.00 3.46
2381 3339 4.409570 CCAAAACTGCTCATGATCGAAAG 58.590 43.478 0.00 0.00 0.00 2.62
2396 3354 4.934075 TCGAAAGATGCATGTGAGAAAG 57.066 40.909 2.46 0.00 33.31 2.62
2397 3355 3.125829 TCGAAAGATGCATGTGAGAAAGC 59.874 43.478 2.46 0.00 33.31 3.51
2398 3356 3.126514 CGAAAGATGCATGTGAGAAAGCT 59.873 43.478 2.46 0.00 0.00 3.74
2399 3357 4.413087 GAAAGATGCATGTGAGAAAGCTG 58.587 43.478 2.46 0.00 0.00 4.24
2400 3358 3.345508 AGATGCATGTGAGAAAGCTGA 57.654 42.857 2.46 0.00 0.00 4.26
2401 3359 3.008330 AGATGCATGTGAGAAAGCTGAC 58.992 45.455 2.46 0.00 0.00 3.51
2402 3360 2.259266 TGCATGTGAGAAAGCTGACA 57.741 45.000 0.00 0.00 42.41 3.58
2404 3362 3.151554 TGCATGTGAGAAAGCTGACATT 58.848 40.909 0.00 0.00 44.95 2.71
2405 3363 3.057806 TGCATGTGAGAAAGCTGACATTG 60.058 43.478 0.00 0.00 44.95 2.82
2406 3364 3.672511 GCATGTGAGAAAGCTGACATTGG 60.673 47.826 0.00 0.00 44.95 3.16
2407 3365 1.881973 TGTGAGAAAGCTGACATTGGC 59.118 47.619 0.00 0.00 33.17 4.52
2408 3366 1.881973 GTGAGAAAGCTGACATTGGCA 59.118 47.619 0.00 0.00 0.00 4.92
2409 3367 2.490903 GTGAGAAAGCTGACATTGGCAT 59.509 45.455 0.00 0.00 0.00 4.40
2410 3368 2.751259 TGAGAAAGCTGACATTGGCATC 59.249 45.455 0.00 0.00 0.00 3.91
2411 3369 3.015327 GAGAAAGCTGACATTGGCATCT 58.985 45.455 0.00 0.00 32.45 2.90
2412 3370 2.753452 AGAAAGCTGACATTGGCATCTG 59.247 45.455 0.00 0.00 0.00 2.90
2413 3371 0.815734 AAGCTGACATTGGCATCTGC 59.184 50.000 9.60 9.60 39.38 4.26
2414 3372 0.323087 AGCTGACATTGGCATCTGCA 60.323 50.000 17.13 7.49 44.36 4.41
2415 3373 0.528924 GCTGACATTGGCATCTGCAA 59.471 50.000 11.95 0.00 44.36 4.08
2416 3374 1.734707 GCTGACATTGGCATCTGCAAC 60.735 52.381 11.95 0.50 44.36 4.17
2417 3375 0.889994 TGACATTGGCATCTGCAACC 59.110 50.000 4.33 0.00 44.36 3.77
2418 3376 0.179156 GACATTGGCATCTGCAACCG 60.179 55.000 4.33 0.00 44.36 4.44
2419 3377 0.895100 ACATTGGCATCTGCAACCGT 60.895 50.000 4.33 0.00 44.36 4.83
2420 3378 0.457166 CATTGGCATCTGCAACCGTG 60.457 55.000 4.33 0.00 44.36 4.94
2421 3379 0.895100 ATTGGCATCTGCAACCGTGT 60.895 50.000 4.33 0.00 44.36 4.49
2422 3380 1.514678 TTGGCATCTGCAACCGTGTC 61.515 55.000 4.33 0.00 44.36 3.67
2423 3381 2.690778 GGCATCTGCAACCGTGTCC 61.691 63.158 4.33 0.00 44.36 4.02
2424 3382 1.672356 GCATCTGCAACCGTGTCCT 60.672 57.895 0.00 0.00 41.59 3.85
2425 3383 1.237285 GCATCTGCAACCGTGTCCTT 61.237 55.000 0.00 0.00 41.59 3.36
2426 3384 0.798776 CATCTGCAACCGTGTCCTTC 59.201 55.000 0.00 0.00 0.00 3.46
2427 3385 0.687354 ATCTGCAACCGTGTCCTTCT 59.313 50.000 0.00 0.00 0.00 2.85
2428 3386 0.033504 TCTGCAACCGTGTCCTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
2429 3387 0.034059 CTGCAACCGTGTCCTTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
2430 3388 0.468226 TGCAACCGTGTCCTTCTCTT 59.532 50.000 0.00 0.00 0.00 2.85
2431 3389 1.134220 TGCAACCGTGTCCTTCTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
2432 3390 1.531578 GCAACCGTGTCCTTCTCTTTC 59.468 52.381 0.00 0.00 0.00 2.62
2433 3391 1.792949 CAACCGTGTCCTTCTCTTTCG 59.207 52.381 0.00 0.00 0.00 3.46
2434 3392 0.319641 ACCGTGTCCTTCTCTTTCGC 60.320 55.000 0.00 0.00 0.00 4.70
2435 3393 0.319555 CCGTGTCCTTCTCTTTCGCA 60.320 55.000 0.00 0.00 0.00 5.10
2436 3394 1.673033 CCGTGTCCTTCTCTTTCGCAT 60.673 52.381 0.00 0.00 0.00 4.73
2437 3395 1.391485 CGTGTCCTTCTCTTTCGCATG 59.609 52.381 0.00 0.00 0.00 4.06
2438 3396 1.129437 GTGTCCTTCTCTTTCGCATGC 59.871 52.381 7.91 7.91 0.00 4.06
2439 3397 1.270785 TGTCCTTCTCTTTCGCATGCA 60.271 47.619 19.57 1.73 0.00 3.96
2440 3398 2.012673 GTCCTTCTCTTTCGCATGCAT 58.987 47.619 19.57 0.00 0.00 3.96
2441 3399 2.011947 TCCTTCTCTTTCGCATGCATG 58.988 47.619 22.70 22.70 0.00 4.06
2453 3411 1.888215 CATGCATGCCAGGTAGTAGG 58.112 55.000 14.93 0.00 0.00 3.18
2454 3412 1.141657 CATGCATGCCAGGTAGTAGGT 59.858 52.381 14.93 0.00 0.00 3.08
2455 3413 0.541392 TGCATGCCAGGTAGTAGGTG 59.459 55.000 16.68 0.00 0.00 4.00
2456 3414 0.815615 GCATGCCAGGTAGTAGGTGC 60.816 60.000 6.36 0.00 0.00 5.01
2457 3415 0.530650 CATGCCAGGTAGTAGGTGCG 60.531 60.000 0.00 0.00 0.00 5.34
2458 3416 1.686325 ATGCCAGGTAGTAGGTGCGG 61.686 60.000 0.00 0.00 0.00 5.69
2459 3417 2.056223 GCCAGGTAGTAGGTGCGGA 61.056 63.158 0.00 0.00 0.00 5.54
2460 3418 1.400530 GCCAGGTAGTAGGTGCGGAT 61.401 60.000 0.00 0.00 0.00 4.18
2461 3419 1.991121 CCAGGTAGTAGGTGCGGATA 58.009 55.000 0.00 0.00 0.00 2.59
2462 3420 1.887198 CCAGGTAGTAGGTGCGGATAG 59.113 57.143 0.00 0.00 0.00 2.08
2463 3421 1.887198 CAGGTAGTAGGTGCGGATAGG 59.113 57.143 0.00 0.00 0.00 2.57
2464 3422 1.498145 AGGTAGTAGGTGCGGATAGGT 59.502 52.381 0.00 0.00 0.00 3.08
2465 3423 1.612463 GGTAGTAGGTGCGGATAGGTG 59.388 57.143 0.00 0.00 0.00 4.00
2466 3424 1.000496 GTAGTAGGTGCGGATAGGTGC 60.000 57.143 0.00 0.00 0.00 5.01
2467 3425 0.397254 AGTAGGTGCGGATAGGTGCT 60.397 55.000 0.00 0.00 0.00 4.40
2468 3426 1.133575 AGTAGGTGCGGATAGGTGCTA 60.134 52.381 0.00 0.00 0.00 3.49
2469 3427 1.000496 GTAGGTGCGGATAGGTGCTAC 60.000 57.143 0.00 0.00 0.00 3.58
2470 3428 0.397254 AGGTGCGGATAGGTGCTACT 60.397 55.000 0.00 0.00 0.00 2.57
2471 3429 0.032267 GGTGCGGATAGGTGCTACTC 59.968 60.000 0.00 0.00 0.00 2.59
2472 3430 0.032267 GTGCGGATAGGTGCTACTCC 59.968 60.000 0.00 0.00 0.00 3.85
2473 3431 1.113517 TGCGGATAGGTGCTACTCCC 61.114 60.000 0.00 0.00 0.00 4.30
2474 3432 0.828343 GCGGATAGGTGCTACTCCCT 60.828 60.000 0.00 0.00 34.74 4.20
2475 3433 1.705873 CGGATAGGTGCTACTCCCTT 58.294 55.000 0.00 0.00 32.08 3.95
2476 3434 1.614413 CGGATAGGTGCTACTCCCTTC 59.386 57.143 0.00 0.00 32.08 3.46
2477 3435 1.614413 GGATAGGTGCTACTCCCTTCG 59.386 57.143 0.00 0.00 32.08 3.79
2478 3436 2.308690 GATAGGTGCTACTCCCTTCGT 58.691 52.381 0.00 0.00 32.08 3.85
2479 3437 2.226962 TAGGTGCTACTCCCTTCGTT 57.773 50.000 0.00 0.00 32.08 3.85
2480 3438 0.896226 AGGTGCTACTCCCTTCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
2481 3439 0.896226 GGTGCTACTCCCTTCGTTCT 59.104 55.000 0.00 0.00 0.00 3.01
2482 3440 2.097825 GGTGCTACTCCCTTCGTTCTA 58.902 52.381 0.00 0.00 0.00 2.10
2483 3441 2.494870 GGTGCTACTCCCTTCGTTCTAA 59.505 50.000 0.00 0.00 0.00 2.10
2484 3442 3.056322 GGTGCTACTCCCTTCGTTCTAAA 60.056 47.826 0.00 0.00 0.00 1.85
2485 3443 4.562143 GGTGCTACTCCCTTCGTTCTAAAA 60.562 45.833 0.00 0.00 0.00 1.52
2486 3444 5.176592 GTGCTACTCCCTTCGTTCTAAAAT 58.823 41.667 0.00 0.00 0.00 1.82
2487 3445 6.335777 GTGCTACTCCCTTCGTTCTAAAATA 58.664 40.000 0.00 0.00 0.00 1.40
2488 3446 6.476053 GTGCTACTCCCTTCGTTCTAAAATAG 59.524 42.308 0.00 0.00 0.00 1.73
2489 3447 6.379133 TGCTACTCCCTTCGTTCTAAAATAGA 59.621 38.462 0.00 0.00 0.00 1.98
2490 3448 7.069578 TGCTACTCCCTTCGTTCTAAAATAGAT 59.930 37.037 0.00 0.00 34.22 1.98
2491 3449 7.382759 GCTACTCCCTTCGTTCTAAAATAGATG 59.617 40.741 0.00 0.00 34.22 2.90
2492 3450 7.419711 ACTCCCTTCGTTCTAAAATAGATGA 57.580 36.000 0.00 0.00 34.22 2.92
2493 3451 7.266400 ACTCCCTTCGTTCTAAAATAGATGAC 58.734 38.462 0.00 0.00 34.22 3.06
2494 3452 7.124448 ACTCCCTTCGTTCTAAAATAGATGACT 59.876 37.037 0.00 0.00 34.22 3.41
2495 3453 7.490000 TCCCTTCGTTCTAAAATAGATGACTC 58.510 38.462 0.00 0.00 34.22 3.36
2496 3454 7.123697 TCCCTTCGTTCTAAAATAGATGACTCA 59.876 37.037 0.00 0.00 34.22 3.41
2497 3455 7.764443 CCCTTCGTTCTAAAATAGATGACTCAA 59.236 37.037 0.00 0.00 34.22 3.02
2498 3456 8.596380 CCTTCGTTCTAAAATAGATGACTCAAC 58.404 37.037 0.00 0.00 34.22 3.18
2499 3457 9.360093 CTTCGTTCTAAAATAGATGACTCAACT 57.640 33.333 0.00 0.00 34.22 3.16
2500 3458 9.706691 TTCGTTCTAAAATAGATGACTCAACTT 57.293 29.630 0.00 0.00 34.22 2.66
2501 3459 9.706691 TCGTTCTAAAATAGATGACTCAACTTT 57.293 29.630 0.00 0.00 34.22 2.66
2502 3460 9.746711 CGTTCTAAAATAGATGACTCAACTTTG 57.253 33.333 0.00 0.00 34.22 2.77
2513 3471 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
2514 3472 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
2515 3473 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
2516 3474 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2517 3475 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
2540 3498 7.723324 ACTAAAACTAGTACAAAGCTGAGTCA 58.277 34.615 0.00 0.00 0.00 3.41
2541 3499 8.368668 ACTAAAACTAGTACAAAGCTGAGTCAT 58.631 33.333 0.00 0.00 0.00 3.06
2542 3500 7.659652 AAAACTAGTACAAAGCTGAGTCATC 57.340 36.000 0.00 0.00 0.00 2.92
2543 3501 6.597832 AACTAGTACAAAGCTGAGTCATCT 57.402 37.500 0.00 0.00 0.00 2.90
2544 3502 7.704578 AACTAGTACAAAGCTGAGTCATCTA 57.295 36.000 0.00 0.00 0.00 1.98
2545 3503 7.889873 ACTAGTACAAAGCTGAGTCATCTAT 57.110 36.000 0.00 0.00 0.00 1.98
2546 3504 8.299990 ACTAGTACAAAGCTGAGTCATCTATT 57.700 34.615 0.00 0.00 0.00 1.73
2547 3505 8.754080 ACTAGTACAAAGCTGAGTCATCTATTT 58.246 33.333 0.00 0.00 0.00 1.40
2548 3506 9.593134 CTAGTACAAAGCTGAGTCATCTATTTT 57.407 33.333 0.00 0.00 0.00 1.82
2549 3507 8.261492 AGTACAAAGCTGAGTCATCTATTTTG 57.739 34.615 0.00 1.63 0.00 2.44
2550 3508 6.506500 ACAAAGCTGAGTCATCTATTTTGG 57.493 37.500 10.21 0.00 30.60 3.28
2551 3509 6.240894 ACAAAGCTGAGTCATCTATTTTGGA 58.759 36.000 10.21 0.00 30.60 3.53
2552 3510 6.716628 ACAAAGCTGAGTCATCTATTTTGGAA 59.283 34.615 10.21 0.00 30.60 3.53
2553 3511 6.749923 AAGCTGAGTCATCTATTTTGGAAC 57.250 37.500 0.00 0.00 0.00 3.62
2554 3512 4.872691 AGCTGAGTCATCTATTTTGGAACG 59.127 41.667 0.00 0.00 0.00 3.95
2555 3513 4.034510 GCTGAGTCATCTATTTTGGAACGG 59.965 45.833 0.00 0.00 0.00 4.44
2556 3514 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2557 3515 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2558 3516 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2559 3517 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2560 3518 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2561 3519 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2562 3520 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2563 3521 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2564 3522 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2565 3523 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
2566 3524 2.544844 TTGGAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
2567 3525 2.544844 TGGAACGGAGGGAGTAGATT 57.455 50.000 0.00 0.00 0.00 2.40
2568 3526 2.385803 TGGAACGGAGGGAGTAGATTC 58.614 52.381 0.00 0.00 0.00 2.52
2569 3527 2.024273 TGGAACGGAGGGAGTAGATTCT 60.024 50.000 0.00 0.00 0.00 2.40
2570 3528 3.032459 GGAACGGAGGGAGTAGATTCTT 58.968 50.000 0.00 0.00 0.00 2.52
2571 3529 3.181474 GGAACGGAGGGAGTAGATTCTTG 60.181 52.174 0.00 0.00 0.00 3.02
2572 3530 1.757699 ACGGAGGGAGTAGATTCTTGC 59.242 52.381 0.00 0.00 0.00 4.01
2573 3531 1.757118 CGGAGGGAGTAGATTCTTGCA 59.243 52.381 0.00 0.00 0.00 4.08
2574 3532 2.366916 CGGAGGGAGTAGATTCTTGCAT 59.633 50.000 0.00 0.00 0.00 3.96
2575 3533 3.737850 GGAGGGAGTAGATTCTTGCATG 58.262 50.000 0.00 0.00 0.00 4.06
2576 3534 3.135530 GGAGGGAGTAGATTCTTGCATGT 59.864 47.826 0.00 0.00 0.00 3.21
2577 3535 4.376146 GAGGGAGTAGATTCTTGCATGTC 58.624 47.826 0.00 0.00 0.00 3.06
2578 3536 3.135530 AGGGAGTAGATTCTTGCATGTCC 59.864 47.826 0.00 0.00 0.00 4.02
2579 3537 3.118261 GGGAGTAGATTCTTGCATGTCCA 60.118 47.826 0.00 0.00 0.00 4.02
2580 3538 4.125703 GGAGTAGATTCTTGCATGTCCAG 58.874 47.826 0.00 0.00 0.00 3.86
2581 3539 3.539604 AGTAGATTCTTGCATGTCCAGC 58.460 45.455 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.892284 TGGTTAAGCAGGTTCAGTTTCA 58.108 40.909 2.54 0.00 0.00 2.69
21 22 5.171339 ACAGCAGAGTGAATTAAGGTCAT 57.829 39.130 0.00 0.00 0.00 3.06
23 24 5.241662 AGAACAGCAGAGTGAATTAAGGTC 58.758 41.667 0.00 0.00 0.00 3.85
29 30 2.555757 GGCAAGAACAGCAGAGTGAATT 59.444 45.455 0.00 0.00 0.00 2.17
54 55 3.106827 TCACTCCATATGAAGGCACTGA 58.893 45.455 3.65 0.00 40.86 3.41
63 64 4.459337 CGCTAGGTACATCACTCCATATGA 59.541 45.833 3.65 0.00 0.00 2.15
65 66 3.764434 CCGCTAGGTACATCACTCCATAT 59.236 47.826 0.00 0.00 0.00 1.78
80 88 5.873179 TGTAATTCTTTTTCACCGCTAGG 57.127 39.130 0.00 0.00 45.13 3.02
83 91 4.142687 CCGATGTAATTCTTTTTCACCGCT 60.143 41.667 0.00 0.00 0.00 5.52
84 92 4.095610 CCGATGTAATTCTTTTTCACCGC 58.904 43.478 0.00 0.00 0.00 5.68
98 106 0.108186 CACTGCTGGAGCCGATGTAA 60.108 55.000 0.00 0.00 41.18 2.41
206 214 9.507329 TGAAGCTGTGTTTATTTAGAGAAGAAT 57.493 29.630 0.00 0.00 0.00 2.40
230 238 2.143122 CAGTTTTTCTGCTAGCCGTGA 58.857 47.619 13.29 5.16 37.36 4.35
231 239 2.143122 TCAGTTTTTCTGCTAGCCGTG 58.857 47.619 13.29 2.57 43.32 4.94
232 240 2.417719 CTCAGTTTTTCTGCTAGCCGT 58.582 47.619 13.29 0.00 43.32 5.68
234 242 2.154462 TGCTCAGTTTTTCTGCTAGCC 58.846 47.619 13.29 0.00 40.84 3.93
235 243 3.365767 CCTTGCTCAGTTTTTCTGCTAGC 60.366 47.826 8.10 8.10 43.32 3.42
236 244 3.365767 GCCTTGCTCAGTTTTTCTGCTAG 60.366 47.826 0.00 0.00 43.32 3.42
238 246 1.339291 GCCTTGCTCAGTTTTTCTGCT 59.661 47.619 0.00 0.00 43.32 4.24
239 247 1.603931 GGCCTTGCTCAGTTTTTCTGC 60.604 52.381 0.00 0.00 43.32 4.26
241 249 0.954452 CGGCCTTGCTCAGTTTTTCT 59.046 50.000 0.00 0.00 0.00 2.52
242 250 0.664466 GCGGCCTTGCTCAGTTTTTC 60.664 55.000 0.00 0.00 0.00 2.29
247 262 2.670934 CAAGCGGCCTTGCTCAGT 60.671 61.111 5.54 0.00 46.60 3.41
249 264 2.359107 CTCAAGCGGCCTTGCTCA 60.359 61.111 5.54 0.00 46.60 4.26
252 267 3.435186 GGACTCAAGCGGCCTTGC 61.435 66.667 0.00 0.00 46.38 4.01
295 310 1.067212 GTCAGACACTCGCCGGATTAT 59.933 52.381 5.05 0.00 0.00 1.28
298 313 1.323271 ATGTCAGACACTCGCCGGAT 61.323 55.000 5.05 0.00 0.00 4.18
305 320 3.141398 TGGCAAAGAATGTCAGACACTC 58.859 45.455 5.05 4.31 39.16 3.51
314 329 4.339872 TGCAAGAAATGGCAAAGAATGT 57.660 36.364 0.00 0.00 37.03 2.71
319 334 4.624024 CACTACATGCAAGAAATGGCAAAG 59.376 41.667 0.00 0.00 44.20 2.77
330 345 5.122711 TGACATGATGAACACTACATGCAAG 59.877 40.000 0.00 0.00 42.28 4.01
334 349 6.104665 AGTCTGACATGATGAACACTACATG 58.895 40.000 10.88 0.00 43.56 3.21
345 360 6.629128 AGTTTGTCTCTAGTCTGACATGATG 58.371 40.000 10.88 0.00 41.93 3.07
355 370 6.362820 CCTAACGTCAAAGTTTGTCTCTAGTC 59.637 42.308 15.08 0.00 35.70 2.59
518 539 4.706476 TGGACCCTTTATTTTGAGCTCATG 59.294 41.667 19.04 2.34 0.00 3.07
538 560 8.262227 TCAGACTTCAAGTAAACTAAAGTTGGA 58.738 33.333 10.45 8.96 38.44 3.53
716 1530 4.421058 GGGCGAACAAAAAGGAATGATAC 58.579 43.478 0.00 0.00 0.00 2.24
756 1584 2.809119 TGAAAACTCGGCGAATTGCTAA 59.191 40.909 12.13 0.00 45.43 3.09
985 1827 1.833630 CTCATGTAGAGGGCCTGAACA 59.166 52.381 12.95 15.81 40.84 3.18
1198 2068 4.763073 TCTCAGTCAGGCAGAACAATATG 58.237 43.478 0.00 0.00 0.00 1.78
1228 2113 1.303799 GCCGCTGATGCATATGGGAG 61.304 60.000 0.00 0.21 39.64 4.30
1346 2234 0.685097 TCCGAAACTGCCACTAGCTT 59.315 50.000 0.00 0.00 44.23 3.74
1363 2251 2.504367 ACAGTTTGCACAGTATGGTCC 58.496 47.619 0.00 0.00 43.62 4.46
1401 2297 1.427368 AGCCTGGGGTGAACATAACAA 59.573 47.619 0.00 0.00 0.00 2.83
1402 2298 1.072266 AGCCTGGGGTGAACATAACA 58.928 50.000 0.00 0.00 0.00 2.41
1403 2299 1.271926 ACAGCCTGGGGTGAACATAAC 60.272 52.381 23.20 0.00 45.42 1.89
1404 2300 1.004277 GACAGCCTGGGGTGAACATAA 59.996 52.381 23.20 0.00 45.42 1.90
1409 2305 1.534476 TACGACAGCCTGGGGTGAA 60.534 57.895 23.20 5.16 45.42 3.18
1563 2462 2.618241 ACGAACACACATGCATCTTTGT 59.382 40.909 0.00 0.00 0.00 2.83
1569 2468 2.766313 ACACTACGAACACACATGCAT 58.234 42.857 0.00 0.00 0.00 3.96
1706 2615 6.398935 GCAACAACTAATTTGATGACGCTTTC 60.399 38.462 4.30 0.00 39.74 2.62
1782 2695 7.769044 TGGCTTCTTCTTACCATAACATTAGTC 59.231 37.037 0.00 0.00 0.00 2.59
1833 2746 0.108520 GGATCCGGCGACACTTTACA 60.109 55.000 9.30 0.00 0.00 2.41
1846 2759 6.525629 ACCAAGTCTATAAATTCTGGATCCG 58.474 40.000 7.39 2.06 0.00 4.18
1868 2781 0.318120 CATTCCAGTGCAACCCAACC 59.682 55.000 0.00 0.00 37.80 3.77
1963 2907 1.752833 GGTCTCTCCCGTGGTTTGT 59.247 57.895 0.00 0.00 0.00 2.83
1985 2929 6.905076 CGGAAATTATGGATTGTGTAAACTCG 59.095 38.462 0.00 0.00 0.00 4.18
2006 2951 5.357314 TGAAAATGTTCAAACTACACCGGAA 59.643 36.000 9.46 0.00 40.87 4.30
2008 2953 5.176407 TGAAAATGTTCAAACTACACCGG 57.824 39.130 0.00 0.00 40.87 5.28
2070 3020 2.267426 GTCACAACAACTTTTGGCACC 58.733 47.619 0.00 0.00 34.12 5.01
2308 3266 3.900116 CGCGAATGTAAATGGCTTTATCG 59.100 43.478 0.00 0.00 33.28 2.92
2309 3267 4.844267 ACGCGAATGTAAATGGCTTTATC 58.156 39.130 15.93 0.00 0.00 1.75
2310 3268 4.893424 ACGCGAATGTAAATGGCTTTAT 57.107 36.364 15.93 0.00 0.00 1.40
2311 3269 4.437659 GGAACGCGAATGTAAATGGCTTTA 60.438 41.667 15.93 0.00 0.00 1.85
2312 3270 3.498082 GAACGCGAATGTAAATGGCTTT 58.502 40.909 15.93 0.00 0.00 3.51
2313 3271 2.159435 GGAACGCGAATGTAAATGGCTT 60.159 45.455 15.93 0.00 0.00 4.35
2314 3272 1.400494 GGAACGCGAATGTAAATGGCT 59.600 47.619 15.93 0.00 0.00 4.75
2315 3273 1.131504 TGGAACGCGAATGTAAATGGC 59.868 47.619 15.93 0.00 0.00 4.40
2316 3274 3.548014 GGATGGAACGCGAATGTAAATGG 60.548 47.826 15.93 0.00 0.00 3.16
2317 3275 3.064682 TGGATGGAACGCGAATGTAAATG 59.935 43.478 15.93 0.00 0.00 2.32
2318 3276 3.064820 GTGGATGGAACGCGAATGTAAAT 59.935 43.478 15.93 0.00 0.00 1.40
2319 3277 2.417239 GTGGATGGAACGCGAATGTAAA 59.583 45.455 15.93 0.00 0.00 2.01
2320 3278 2.004017 GTGGATGGAACGCGAATGTAA 58.996 47.619 15.93 0.00 0.00 2.41
2321 3279 1.066787 TGTGGATGGAACGCGAATGTA 60.067 47.619 15.93 0.00 0.00 2.29
2322 3280 0.321210 TGTGGATGGAACGCGAATGT 60.321 50.000 15.93 0.00 0.00 2.71
2323 3281 0.374758 CTGTGGATGGAACGCGAATG 59.625 55.000 15.93 0.00 0.00 2.67
2324 3282 1.369091 GCTGTGGATGGAACGCGAAT 61.369 55.000 15.93 0.00 0.00 3.34
2325 3283 2.032634 GCTGTGGATGGAACGCGAA 61.033 57.895 15.93 0.00 0.00 4.70
2326 3284 2.434185 GCTGTGGATGGAACGCGA 60.434 61.111 15.93 0.00 0.00 5.87
2327 3285 3.853330 CGCTGTGGATGGAACGCG 61.853 66.667 3.53 3.53 35.50 6.01
2328 3286 4.166011 GCGCTGTGGATGGAACGC 62.166 66.667 0.00 0.00 39.49 4.84
2329 3287 3.499737 GGCGCTGTGGATGGAACG 61.500 66.667 7.64 0.00 0.00 3.95
2330 3288 1.315257 ATTGGCGCTGTGGATGGAAC 61.315 55.000 7.64 0.00 0.00 3.62
2331 3289 1.001020 ATTGGCGCTGTGGATGGAA 60.001 52.632 7.64 0.00 0.00 3.53
2332 3290 1.451927 GATTGGCGCTGTGGATGGA 60.452 57.895 7.64 0.00 0.00 3.41
2333 3291 1.442526 GAGATTGGCGCTGTGGATGG 61.443 60.000 7.64 0.00 0.00 3.51
2334 3292 1.442526 GGAGATTGGCGCTGTGGATG 61.443 60.000 7.64 0.00 0.00 3.51
2335 3293 1.153086 GGAGATTGGCGCTGTGGAT 60.153 57.895 7.64 0.00 0.00 3.41
2336 3294 2.268920 GGAGATTGGCGCTGTGGA 59.731 61.111 7.64 0.00 0.00 4.02
2337 3295 2.046023 TGGAGATTGGCGCTGTGG 60.046 61.111 7.64 0.00 0.00 4.17
2338 3296 2.401766 GGTGGAGATTGGCGCTGTG 61.402 63.158 7.64 0.00 0.00 3.66
2339 3297 2.045926 GGTGGAGATTGGCGCTGT 60.046 61.111 7.64 0.00 0.00 4.40
2340 3298 3.197790 CGGTGGAGATTGGCGCTG 61.198 66.667 7.64 0.00 0.00 5.18
2344 3302 3.936772 TTGGGCGGTGGAGATTGGC 62.937 63.158 0.00 0.00 0.00 4.52
2345 3303 0.897863 TTTTGGGCGGTGGAGATTGG 60.898 55.000 0.00 0.00 0.00 3.16
2346 3304 0.243636 GTTTTGGGCGGTGGAGATTG 59.756 55.000 0.00 0.00 0.00 2.67
2347 3305 0.112412 AGTTTTGGGCGGTGGAGATT 59.888 50.000 0.00 0.00 0.00 2.40
2348 3306 0.609131 CAGTTTTGGGCGGTGGAGAT 60.609 55.000 0.00 0.00 0.00 2.75
2349 3307 1.228124 CAGTTTTGGGCGGTGGAGA 60.228 57.895 0.00 0.00 0.00 3.71
2350 3308 2.919494 GCAGTTTTGGGCGGTGGAG 61.919 63.158 0.00 0.00 0.00 3.86
2351 3309 2.909965 GCAGTTTTGGGCGGTGGA 60.910 61.111 0.00 0.00 0.00 4.02
2352 3310 2.912025 AGCAGTTTTGGGCGGTGG 60.912 61.111 0.00 0.00 34.54 4.61
2353 3311 1.526575 ATGAGCAGTTTTGGGCGGTG 61.527 55.000 0.00 0.00 34.54 4.94
2354 3312 1.228552 ATGAGCAGTTTTGGGCGGT 60.229 52.632 0.00 0.00 34.54 5.68
2355 3313 1.213537 CATGAGCAGTTTTGGGCGG 59.786 57.895 0.00 0.00 34.54 6.13
2356 3314 0.813184 ATCATGAGCAGTTTTGGGCG 59.187 50.000 0.09 0.00 34.54 6.13
2357 3315 1.202222 CGATCATGAGCAGTTTTGGGC 60.202 52.381 12.15 0.00 0.00 5.36
2358 3316 2.358957 TCGATCATGAGCAGTTTTGGG 58.641 47.619 12.15 0.00 0.00 4.12
2359 3317 4.154737 TCTTTCGATCATGAGCAGTTTTGG 59.845 41.667 12.15 0.00 0.00 3.28
2360 3318 5.287170 TCTTTCGATCATGAGCAGTTTTG 57.713 39.130 12.15 0.00 0.00 2.44
2361 3319 5.675575 GCATCTTTCGATCATGAGCAGTTTT 60.676 40.000 12.15 0.00 0.00 2.43
2362 3320 4.201891 GCATCTTTCGATCATGAGCAGTTT 60.202 41.667 12.15 0.00 0.00 2.66
2363 3321 3.311871 GCATCTTTCGATCATGAGCAGTT 59.688 43.478 12.15 0.00 0.00 3.16
2364 3322 2.871022 GCATCTTTCGATCATGAGCAGT 59.129 45.455 12.15 0.00 0.00 4.40
2365 3323 2.870411 TGCATCTTTCGATCATGAGCAG 59.130 45.455 12.15 4.20 0.00 4.24
2366 3324 2.908916 TGCATCTTTCGATCATGAGCA 58.091 42.857 12.15 4.08 0.00 4.26
2367 3325 3.250280 ACATGCATCTTTCGATCATGAGC 59.750 43.478 0.00 0.00 37.90 4.26
2368 3326 4.510340 TCACATGCATCTTTCGATCATGAG 59.490 41.667 0.09 10.64 37.90 2.90
2369 3327 4.444536 TCACATGCATCTTTCGATCATGA 58.555 39.130 0.00 0.00 37.90 3.07
2370 3328 4.510340 TCTCACATGCATCTTTCGATCATG 59.490 41.667 0.00 0.00 39.02 3.07
2371 3329 4.700700 TCTCACATGCATCTTTCGATCAT 58.299 39.130 0.00 0.00 0.00 2.45
2372 3330 4.127566 TCTCACATGCATCTTTCGATCA 57.872 40.909 0.00 0.00 0.00 2.92
2373 3331 5.475273 TTTCTCACATGCATCTTTCGATC 57.525 39.130 0.00 0.00 0.00 3.69
2374 3332 4.201891 GCTTTCTCACATGCATCTTTCGAT 60.202 41.667 0.00 0.00 0.00 3.59
2375 3333 3.125829 GCTTTCTCACATGCATCTTTCGA 59.874 43.478 0.00 0.00 0.00 3.71
2376 3334 3.126514 AGCTTTCTCACATGCATCTTTCG 59.873 43.478 0.00 0.00 0.00 3.46
2377 3335 4.155462 TCAGCTTTCTCACATGCATCTTTC 59.845 41.667 0.00 0.00 0.00 2.62
2378 3336 4.077108 TCAGCTTTCTCACATGCATCTTT 58.923 39.130 0.00 0.00 0.00 2.52
2379 3337 3.439476 GTCAGCTTTCTCACATGCATCTT 59.561 43.478 0.00 0.00 0.00 2.40
2380 3338 3.008330 GTCAGCTTTCTCACATGCATCT 58.992 45.455 0.00 0.00 0.00 2.90
2381 3339 2.745821 TGTCAGCTTTCTCACATGCATC 59.254 45.455 0.00 0.00 0.00 3.91
2382 3340 2.786777 TGTCAGCTTTCTCACATGCAT 58.213 42.857 0.00 0.00 0.00 3.96
2383 3341 2.259266 TGTCAGCTTTCTCACATGCA 57.741 45.000 0.00 0.00 0.00 3.96
2384 3342 3.499048 CAATGTCAGCTTTCTCACATGC 58.501 45.455 0.00 0.00 29.78 4.06
2385 3343 3.672511 GCCAATGTCAGCTTTCTCACATG 60.673 47.826 0.00 0.00 29.78 3.21
2386 3344 2.490903 GCCAATGTCAGCTTTCTCACAT 59.509 45.455 0.00 0.00 0.00 3.21
2387 3345 1.881973 GCCAATGTCAGCTTTCTCACA 59.118 47.619 0.00 0.00 0.00 3.58
2388 3346 1.881973 TGCCAATGTCAGCTTTCTCAC 59.118 47.619 0.00 0.00 0.00 3.51
2389 3347 2.275134 TGCCAATGTCAGCTTTCTCA 57.725 45.000 0.00 0.00 0.00 3.27
2390 3348 3.015327 AGATGCCAATGTCAGCTTTCTC 58.985 45.455 0.00 0.00 0.00 2.87
2391 3349 2.753452 CAGATGCCAATGTCAGCTTTCT 59.247 45.455 0.00 0.00 0.00 2.52
2392 3350 2.734492 GCAGATGCCAATGTCAGCTTTC 60.734 50.000 0.00 0.00 34.31 2.62
2393 3351 1.203994 GCAGATGCCAATGTCAGCTTT 59.796 47.619 0.00 0.00 34.31 3.51
2394 3352 0.815734 GCAGATGCCAATGTCAGCTT 59.184 50.000 0.00 0.00 34.31 3.74
2395 3353 0.323087 TGCAGATGCCAATGTCAGCT 60.323 50.000 1.72 0.00 41.18 4.24
2396 3354 0.528924 TTGCAGATGCCAATGTCAGC 59.471 50.000 1.72 0.00 41.18 4.26
2397 3355 1.135199 GGTTGCAGATGCCAATGTCAG 60.135 52.381 1.72 0.00 41.18 3.51
2398 3356 0.889994 GGTTGCAGATGCCAATGTCA 59.110 50.000 1.72 0.00 41.18 3.58
2399 3357 0.179156 CGGTTGCAGATGCCAATGTC 60.179 55.000 1.72 0.00 41.18 3.06
2400 3358 0.895100 ACGGTTGCAGATGCCAATGT 60.895 50.000 1.72 0.00 41.18 2.71
2401 3359 0.457166 CACGGTTGCAGATGCCAATG 60.457 55.000 1.72 0.00 41.18 2.82
2402 3360 0.895100 ACACGGTTGCAGATGCCAAT 60.895 50.000 1.72 0.00 41.18 3.16
2403 3361 1.514678 GACACGGTTGCAGATGCCAA 61.515 55.000 1.72 0.00 41.18 4.52
2404 3362 1.965930 GACACGGTTGCAGATGCCA 60.966 57.895 1.72 0.00 41.18 4.92
2405 3363 2.690778 GGACACGGTTGCAGATGCC 61.691 63.158 1.72 0.00 41.18 4.40
2406 3364 1.237285 AAGGACACGGTTGCAGATGC 61.237 55.000 0.00 0.00 42.50 3.91
2407 3365 0.798776 GAAGGACACGGTTGCAGATG 59.201 55.000 0.00 0.00 0.00 2.90
2408 3366 0.687354 AGAAGGACACGGTTGCAGAT 59.313 50.000 0.00 0.00 0.00 2.90
2409 3367 0.033504 GAGAAGGACACGGTTGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
2410 3368 0.034059 AGAGAAGGACACGGTTGCAG 59.966 55.000 0.00 0.00 0.00 4.41
2411 3369 0.468226 AAGAGAAGGACACGGTTGCA 59.532 50.000 0.00 0.00 0.00 4.08
2412 3370 1.531578 GAAAGAGAAGGACACGGTTGC 59.468 52.381 0.00 0.00 0.00 4.17
2413 3371 1.792949 CGAAAGAGAAGGACACGGTTG 59.207 52.381 0.00 0.00 0.00 3.77
2414 3372 1.872653 GCGAAAGAGAAGGACACGGTT 60.873 52.381 0.00 0.00 0.00 4.44
2415 3373 0.319641 GCGAAAGAGAAGGACACGGT 60.320 55.000 0.00 0.00 0.00 4.83
2416 3374 0.319555 TGCGAAAGAGAAGGACACGG 60.320 55.000 0.00 0.00 0.00 4.94
2417 3375 1.391485 CATGCGAAAGAGAAGGACACG 59.609 52.381 0.00 0.00 0.00 4.49
2418 3376 1.129437 GCATGCGAAAGAGAAGGACAC 59.871 52.381 0.00 0.00 0.00 3.67
2419 3377 1.270785 TGCATGCGAAAGAGAAGGACA 60.271 47.619 14.09 0.00 0.00 4.02
2420 3378 1.442769 TGCATGCGAAAGAGAAGGAC 58.557 50.000 14.09 0.00 0.00 3.85
2421 3379 2.011947 CATGCATGCGAAAGAGAAGGA 58.988 47.619 14.93 0.00 0.00 3.36
2422 3380 1.533338 GCATGCATGCGAAAGAGAAGG 60.533 52.381 33.99 1.48 44.67 3.46
2423 3381 1.823828 GCATGCATGCGAAAGAGAAG 58.176 50.000 33.99 1.70 44.67 2.85
2434 3392 1.141657 ACCTACTACCTGGCATGCATG 59.858 52.381 22.70 22.70 0.00 4.06
2435 3393 1.141657 CACCTACTACCTGGCATGCAT 59.858 52.381 21.36 4.06 0.00 3.96
2436 3394 0.541392 CACCTACTACCTGGCATGCA 59.459 55.000 21.36 4.79 0.00 3.96
2437 3395 0.815615 GCACCTACTACCTGGCATGC 60.816 60.000 9.90 9.90 0.00 4.06
2438 3396 0.530650 CGCACCTACTACCTGGCATG 60.531 60.000 0.00 0.00 0.00 4.06
2439 3397 1.686325 CCGCACCTACTACCTGGCAT 61.686 60.000 0.00 0.00 0.00 4.40
2440 3398 2.355986 CCGCACCTACTACCTGGCA 61.356 63.158 0.00 0.00 0.00 4.92
2441 3399 1.400530 ATCCGCACCTACTACCTGGC 61.401 60.000 0.00 0.00 0.00 4.85
2442 3400 1.887198 CTATCCGCACCTACTACCTGG 59.113 57.143 0.00 0.00 0.00 4.45
2443 3401 1.887198 CCTATCCGCACCTACTACCTG 59.113 57.143 0.00 0.00 0.00 4.00
2444 3402 1.498145 ACCTATCCGCACCTACTACCT 59.502 52.381 0.00 0.00 0.00 3.08
2445 3403 1.612463 CACCTATCCGCACCTACTACC 59.388 57.143 0.00 0.00 0.00 3.18
2446 3404 1.000496 GCACCTATCCGCACCTACTAC 60.000 57.143 0.00 0.00 0.00 2.73
2447 3405 1.133575 AGCACCTATCCGCACCTACTA 60.134 52.381 0.00 0.00 0.00 1.82
2448 3406 0.397254 AGCACCTATCCGCACCTACT 60.397 55.000 0.00 0.00 0.00 2.57
2449 3407 1.000496 GTAGCACCTATCCGCACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
2450 3408 1.133575 AGTAGCACCTATCCGCACCTA 60.134 52.381 0.00 0.00 0.00 3.08
2451 3409 0.397254 AGTAGCACCTATCCGCACCT 60.397 55.000 0.00 0.00 0.00 4.00
2452 3410 0.032267 GAGTAGCACCTATCCGCACC 59.968 60.000 0.00 0.00 0.00 5.01
2453 3411 0.032267 GGAGTAGCACCTATCCGCAC 59.968 60.000 0.00 0.00 0.00 5.34
2454 3412 1.113517 GGGAGTAGCACCTATCCGCA 61.114 60.000 0.00 0.00 32.30 5.69
2455 3413 0.828343 AGGGAGTAGCACCTATCCGC 60.828 60.000 0.00 0.00 34.71 5.54
2456 3414 1.614413 GAAGGGAGTAGCACCTATCCG 59.386 57.143 0.00 0.00 35.64 4.18
2457 3415 1.614413 CGAAGGGAGTAGCACCTATCC 59.386 57.143 0.00 0.00 35.64 2.59
2458 3416 2.308690 ACGAAGGGAGTAGCACCTATC 58.691 52.381 0.00 0.00 35.64 2.08
2459 3417 2.456073 ACGAAGGGAGTAGCACCTAT 57.544 50.000 0.00 0.00 35.64 2.57
2460 3418 2.097825 GAACGAAGGGAGTAGCACCTA 58.902 52.381 0.00 0.00 35.64 3.08
2461 3419 0.896226 GAACGAAGGGAGTAGCACCT 59.104 55.000 0.00 0.00 39.21 4.00
2462 3420 0.896226 AGAACGAAGGGAGTAGCACC 59.104 55.000 0.00 0.00 0.00 5.01
2463 3421 3.863142 TTAGAACGAAGGGAGTAGCAC 57.137 47.619 0.00 0.00 0.00 4.40
2464 3422 4.877378 TTTTAGAACGAAGGGAGTAGCA 57.123 40.909 0.00 0.00 0.00 3.49
2465 3423 6.803642 TCTATTTTAGAACGAAGGGAGTAGC 58.196 40.000 0.00 0.00 0.00 3.58
2466 3424 8.630917 TCATCTATTTTAGAACGAAGGGAGTAG 58.369 37.037 0.00 0.00 38.50 2.57
2467 3425 8.411683 GTCATCTATTTTAGAACGAAGGGAGTA 58.588 37.037 0.00 0.00 38.50 2.59
2468 3426 7.124448 AGTCATCTATTTTAGAACGAAGGGAGT 59.876 37.037 0.00 0.00 38.50 3.85
2469 3427 7.493367 AGTCATCTATTTTAGAACGAAGGGAG 58.507 38.462 0.00 0.00 38.50 4.30
2470 3428 7.123697 TGAGTCATCTATTTTAGAACGAAGGGA 59.876 37.037 0.00 0.00 38.50 4.20
2471 3429 7.265673 TGAGTCATCTATTTTAGAACGAAGGG 58.734 38.462 0.00 0.00 38.50 3.95
2472 3430 8.596380 GTTGAGTCATCTATTTTAGAACGAAGG 58.404 37.037 0.00 0.00 38.50 3.46
2473 3431 9.360093 AGTTGAGTCATCTATTTTAGAACGAAG 57.640 33.333 1.70 0.00 38.50 3.79
2474 3432 9.706691 AAGTTGAGTCATCTATTTTAGAACGAA 57.293 29.630 4.14 0.00 38.50 3.85
2475 3433 9.706691 AAAGTTGAGTCATCTATTTTAGAACGA 57.293 29.630 4.14 0.00 38.50 3.85
2476 3434 9.746711 CAAAGTTGAGTCATCTATTTTAGAACG 57.253 33.333 4.14 0.00 38.50 3.95
2487 3445 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
2488 3446 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
2489 3447 8.732746 ACAAAGTTAGTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
2490 3448 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
2491 3449 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
2514 3472 8.853126 TGACTCAGCTTTGTACTAGTTTTAGTA 58.147 33.333 0.00 0.00 40.55 1.82
2515 3473 7.723324 TGACTCAGCTTTGTACTAGTTTTAGT 58.277 34.615 0.00 0.00 42.66 2.24
2516 3474 8.764524 ATGACTCAGCTTTGTACTAGTTTTAG 57.235 34.615 0.00 0.00 0.00 1.85
2517 3475 8.585881 AGATGACTCAGCTTTGTACTAGTTTTA 58.414 33.333 0.00 0.00 0.00 1.52
2518 3476 7.445945 AGATGACTCAGCTTTGTACTAGTTTT 58.554 34.615 0.00 0.00 0.00 2.43
2519 3477 6.998802 AGATGACTCAGCTTTGTACTAGTTT 58.001 36.000 0.00 0.00 0.00 2.66
2520 3478 6.597832 AGATGACTCAGCTTTGTACTAGTT 57.402 37.500 0.00 0.00 0.00 2.24
2521 3479 7.889873 ATAGATGACTCAGCTTTGTACTAGT 57.110 36.000 1.33 0.00 30.76 2.57
2522 3480 9.593134 AAAATAGATGACTCAGCTTTGTACTAG 57.407 33.333 1.33 0.00 30.76 2.57
2523 3481 9.371136 CAAAATAGATGACTCAGCTTTGTACTA 57.629 33.333 1.33 0.00 30.76 1.82
2524 3482 7.335422 CCAAAATAGATGACTCAGCTTTGTACT 59.665 37.037 1.33 0.00 30.76 2.73
2525 3483 7.334421 TCCAAAATAGATGACTCAGCTTTGTAC 59.666 37.037 1.33 0.00 30.76 2.90
2526 3484 7.394016 TCCAAAATAGATGACTCAGCTTTGTA 58.606 34.615 1.33 0.00 30.76 2.41
2527 3485 6.240894 TCCAAAATAGATGACTCAGCTTTGT 58.759 36.000 1.33 0.00 30.76 2.83
2528 3486 6.748333 TCCAAAATAGATGACTCAGCTTTG 57.252 37.500 1.33 1.55 30.76 2.77
2529 3487 6.128172 CGTTCCAAAATAGATGACTCAGCTTT 60.128 38.462 1.33 0.00 30.76 3.51
2530 3488 5.352569 CGTTCCAAAATAGATGACTCAGCTT 59.647 40.000 1.33 0.00 30.76 3.74
2531 3489 4.872691 CGTTCCAAAATAGATGACTCAGCT 59.127 41.667 1.74 1.74 33.54 4.24
2532 3490 4.034510 CCGTTCCAAAATAGATGACTCAGC 59.965 45.833 0.00 0.00 0.00 4.26
2533 3491 5.419542 TCCGTTCCAAAATAGATGACTCAG 58.580 41.667 0.00 0.00 0.00 3.35
2534 3492 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2535 3493 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2536 3494 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2537 3495 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2538 3496 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2539 3497 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2540 3498 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2541 3499 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2542 3500 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2543 3501 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2544 3502 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2545 3503 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
2546 3504 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2547 3505 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
2548 3506 2.024273 AGAATCTACTCCCTCCGTTCCA 60.024 50.000 0.00 0.00 0.00 3.53
2549 3507 2.668625 AGAATCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
2550 3508 3.738590 GCAAGAATCTACTCCCTCCGTTC 60.739 52.174 0.00 0.00 0.00 3.95
2551 3509 2.168728 GCAAGAATCTACTCCCTCCGTT 59.831 50.000 0.00 0.00 0.00 4.44
2552 3510 1.757699 GCAAGAATCTACTCCCTCCGT 59.242 52.381 0.00 0.00 0.00 4.69
2553 3511 1.757118 TGCAAGAATCTACTCCCTCCG 59.243 52.381 0.00 0.00 0.00 4.63
2554 3512 3.135530 ACATGCAAGAATCTACTCCCTCC 59.864 47.826 0.00 0.00 0.00 4.30
2555 3513 4.376146 GACATGCAAGAATCTACTCCCTC 58.624 47.826 0.00 0.00 0.00 4.30
2556 3514 3.135530 GGACATGCAAGAATCTACTCCCT 59.864 47.826 0.00 0.00 0.00 4.20
2557 3515 3.118261 TGGACATGCAAGAATCTACTCCC 60.118 47.826 0.00 0.00 0.00 4.30
2558 3516 4.125703 CTGGACATGCAAGAATCTACTCC 58.874 47.826 0.00 0.00 0.00 3.85
2559 3517 3.559242 GCTGGACATGCAAGAATCTACTC 59.441 47.826 0.00 0.00 0.00 2.59
2560 3518 3.539604 GCTGGACATGCAAGAATCTACT 58.460 45.455 0.00 0.00 0.00 2.57
2561 3519 3.959573 GCTGGACATGCAAGAATCTAC 57.040 47.619 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.