Multiple sequence alignment - TraesCS5B01G297800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G297800 chr5B 100.000 4325 0 0 1 4325 480294718 480299042 0.000000e+00 7987.0
1 TraesCS5B01G297800 chr5A 87.957 2242 181 52 2130 4325 505622208 505624406 0.000000e+00 2562.0
2 TraesCS5B01G297800 chr5A 88.418 1416 103 30 1 1378 505613182 505614574 0.000000e+00 1650.0
3 TraesCS5B01G297800 chr5A 91.120 259 23 0 1587 1845 505621399 505621657 6.880000e-93 351.0
4 TraesCS5B01G297800 chr5A 88.525 61 5 1 2322 2380 356499679 356499619 6.000000e-09 73.1
5 TraesCS5B01G297800 chr5D 92.342 1123 52 11 3192 4289 400292742 400293855 0.000000e+00 1567.0
6 TraesCS5B01G297800 chr5D 92.483 572 34 6 2377 2939 400290074 400290645 0.000000e+00 809.0
7 TraesCS5B01G297800 chr5D 90.618 469 25 11 1 456 400281464 400281926 4.780000e-169 604.0
8 TraesCS5B01G297800 chr5D 91.184 397 17 5 2001 2381 400284350 400284744 1.380000e-144 523.0
9 TraesCS5B01G297800 chr5D 84.879 496 38 17 477 946 400281912 400282396 2.360000e-127 466.0
10 TraesCS5B01G297800 chr5D 94.332 247 13 1 1665 1911 400284097 400284342 1.140000e-100 377.0
11 TraesCS5B01G297800 chr5D 90.062 161 11 3 2926 3082 400292583 400292742 2.040000e-48 204.0
12 TraesCS5B01G297800 chr5D 90.000 90 7 2 1911 1998 516792228 516792139 9.830000e-22 115.0
13 TraesCS5B01G297800 chr5D 92.647 68 4 1 1931 1997 442203794 442203727 3.560000e-16 97.1
14 TraesCS5B01G297800 chr5D 94.118 51 3 0 2322 2372 513975107 513975157 1.290000e-10 78.7
15 TraesCS5B01G297800 chr1B 83.882 881 77 29 3460 4292 645520610 645519747 0.000000e+00 780.0
16 TraesCS5B01G297800 chr1B 84.694 98 14 1 1909 2005 686935403 686935306 3.560000e-16 97.1
17 TraesCS5B01G297800 chr1B 84.783 92 10 4 1906 1997 662546209 662546296 5.960000e-14 89.8
18 TraesCS5B01G297800 chr1B 100.000 44 0 0 2322 2365 662552739 662552782 9.970000e-12 82.4
19 TraesCS5B01G297800 chr1A 80.298 939 81 50 3460 4313 560313559 560314478 7.950000e-172 614.0
20 TraesCS5B01G297800 chr1A 94.545 165 8 1 1 165 459593713 459593550 2.000000e-63 254.0
21 TraesCS5B01G297800 chr1A 88.506 87 7 2 1914 1999 287305717 287305633 7.650000e-18 102.0
22 TraesCS5B01G297800 chr1A 96.000 50 0 2 2322 2369 572016778 572016729 3.590000e-11 80.5
23 TraesCS5B01G297800 chr1D 86.526 475 43 13 3827 4292 467626525 467626063 1.800000e-138 503.0
24 TraesCS5B01G297800 chr1D 86.503 326 24 6 3460 3778 467627652 467627340 1.490000e-89 340.0
25 TraesCS5B01G297800 chr1D 92.941 85 4 2 1920 2002 22976539 22976623 5.870000e-24 122.0
26 TraesCS5B01G297800 chr1D 86.667 90 9 3 1909 1997 476230673 476230760 3.560000e-16 97.1
27 TraesCS5B01G297800 chr1D 100.000 45 0 0 2322 2366 307349199 307349243 2.770000e-12 84.2
28 TraesCS5B01G297800 chr3B 95.758 165 6 1 1 165 464613471 464613634 9.220000e-67 265.0
29 TraesCS5B01G297800 chr2B 95.758 165 6 1 1 165 698085472 698085635 9.220000e-67 265.0
30 TraesCS5B01G297800 chr2A 96.835 158 4 1 1 158 66913582 66913738 3.320000e-66 263.0
31 TraesCS5B01G297800 chr2A 96.000 50 1 1 2319 2368 617636076 617636124 3.590000e-11 80.5
32 TraesCS5B01G297800 chr6B 96.774 155 4 1 1 155 513612644 513612797 1.540000e-64 257.0
33 TraesCS5B01G297800 chr3D 96.203 158 5 1 1 158 554063463 554063307 1.540000e-64 257.0
34 TraesCS5B01G297800 chr3D 91.228 57 2 3 2322 2378 549748150 549748097 1.670000e-09 75.0
35 TraesCS5B01G297800 chr7D 93.939 165 9 1 1 165 77074837 77074674 9.290000e-62 248.0
36 TraesCS5B01G297800 chr7D 87.778 90 10 1 1909 1997 234807766 234807855 2.130000e-18 104.0
37 TraesCS5B01G297800 chr3A 87.778 90 10 1 1912 2000 491189512 491189423 2.130000e-18 104.0
38 TraesCS5B01G297800 chr6D 95.833 48 2 0 2322 2369 86550877 86550924 1.290000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G297800 chr5B 480294718 480299042 4324 False 7987.0 7987 100.00000 1 4325 1 chr5B.!!$F1 4324
1 TraesCS5B01G297800 chr5A 505613182 505614574 1392 False 1650.0 1650 88.41800 1 1378 1 chr5A.!!$F1 1377
2 TraesCS5B01G297800 chr5A 505621399 505624406 3007 False 1456.5 2562 89.53850 1587 4325 2 chr5A.!!$F2 2738
3 TraesCS5B01G297800 chr5D 400290074 400293855 3781 False 860.0 1567 91.62900 2377 4289 3 chr5D.!!$F3 1912
4 TraesCS5B01G297800 chr5D 400281464 400284744 3280 False 492.5 604 90.25325 1 2381 4 chr5D.!!$F2 2380
5 TraesCS5B01G297800 chr1B 645519747 645520610 863 True 780.0 780 83.88200 3460 4292 1 chr1B.!!$R1 832
6 TraesCS5B01G297800 chr1A 560313559 560314478 919 False 614.0 614 80.29800 3460 4313 1 chr1A.!!$F1 853
7 TraesCS5B01G297800 chr1D 467626063 467627652 1589 True 421.5 503 86.51450 3460 4292 2 chr1D.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 995 0.179171 GCACTGCTGATGTGTGATGC 60.179 55.0 0.0 0.0 37.7 3.91 F
1530 2745 0.323451 CCTTACCTTTGGCCCCTGAC 60.323 60.0 0.0 0.0 0.0 3.51 F
3168 6646 0.106268 TTGCCCTTTCAGTGCCTTCA 60.106 50.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 4095 0.443869 GCTTGCTCGAGATTTGCGAA 59.556 50.000 18.75 0.00 37.32 4.70 R
3201 6686 0.108186 CACTGCTGGAGCCGATGTAA 60.108 55.000 0.00 0.00 41.18 2.41 R
4088 8407 1.833630 CTCATGTAGAGGGCCTGAACA 59.166 52.381 12.95 15.81 40.84 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 295 4.040198 GGGAGGAGGGAAGGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
283 296 2.654204 GGGAGGAGGGAAGGGGGTA 61.654 68.421 0.00 0.00 0.00 3.69
452 473 1.002990 CCATCAGACAGCAGTGGCA 60.003 57.895 0.00 0.00 44.61 4.92
454 475 1.460504 CATCAGACAGCAGTGGCATT 58.539 50.000 0.00 0.00 44.61 3.56
456 477 0.671472 TCAGACAGCAGTGGCATTCG 60.671 55.000 0.00 0.00 44.61 3.34
457 478 0.671472 CAGACAGCAGTGGCATTCGA 60.671 55.000 0.00 0.00 44.61 3.71
458 479 0.251354 AGACAGCAGTGGCATTCGAT 59.749 50.000 0.00 0.00 44.61 3.59
459 480 1.089920 GACAGCAGTGGCATTCGATT 58.910 50.000 0.00 0.00 44.61 3.34
463 484 0.659957 GCAGTGGCATTCGATTCTCC 59.340 55.000 0.00 0.00 40.72 3.71
572 599 3.470567 GACGAACACAGCGCTCGG 61.471 66.667 18.41 11.51 36.90 4.63
573 600 3.891586 GACGAACACAGCGCTCGGA 62.892 63.158 18.41 0.00 36.90 4.55
574 601 3.470567 CGAACACAGCGCTCGGAC 61.471 66.667 7.13 2.09 0.00 4.79
575 602 2.049063 GAACACAGCGCTCGGACT 60.049 61.111 7.13 0.00 0.00 3.85
576 603 2.049063 AACACAGCGCTCGGACTC 60.049 61.111 7.13 0.00 0.00 3.36
577 604 3.898627 AACACAGCGCTCGGACTCG 62.899 63.158 7.13 0.00 37.82 4.18
601 628 3.333029 TCTCGTCCATTTCTGCATCAA 57.667 42.857 0.00 0.00 0.00 2.57
677 720 6.144845 TCCTTCCTTGGATTCATTTTCTCT 57.855 37.500 0.00 0.00 0.00 3.10
688 731 3.431415 TCATTTTCTCTCCTCTCCGACA 58.569 45.455 0.00 0.00 0.00 4.35
708 751 3.564027 GGCGTCCGGCGAGATTTG 61.564 66.667 20.06 0.04 44.92 2.32
709 752 4.223964 GCGTCCGGCGAGATTTGC 62.224 66.667 20.06 6.48 44.77 3.68
710 753 3.913573 CGTCCGGCGAGATTTGCG 61.914 66.667 9.30 0.06 44.77 4.85
747 790 0.716108 CAGATCTTGCGTCGGTTGAC 59.284 55.000 0.00 0.00 41.91 3.18
787 830 4.460731 CCCCTTCCTTTTGATCTTGTCTTC 59.539 45.833 0.00 0.00 0.00 2.87
848 892 1.792115 TCATGAAATGGGGATTGGGC 58.208 50.000 0.00 0.00 46.73 5.36
873 926 2.099427 GCCTAGTTACTCTGTTCTCCCG 59.901 54.545 0.00 0.00 0.00 5.14
880 933 5.715753 AGTTACTCTGTTCTCCCGTCTATTT 59.284 40.000 0.00 0.00 0.00 1.40
881 934 6.888632 AGTTACTCTGTTCTCCCGTCTATTTA 59.111 38.462 0.00 0.00 0.00 1.40
885 938 2.433239 TGTTCTCCCGTCTATTTAGGCC 59.567 50.000 0.00 0.00 0.00 5.19
935 990 0.251474 ATTGGGCACTGCTGATGTGT 60.251 50.000 0.00 0.00 37.70 3.72
940 995 0.179171 GCACTGCTGATGTGTGATGC 60.179 55.000 0.00 0.00 37.70 3.91
971 1026 9.823647 TTGCTTTCAACCTAATTTGTGATTTTA 57.176 25.926 0.00 0.00 0.00 1.52
989 2180 5.808366 TTTTACTGTCTCAGACTGACCAT 57.192 39.130 17.96 0.00 35.84 3.55
994 2185 3.165071 TGTCTCAGACTGACCATAAGCA 58.835 45.455 6.33 0.00 33.15 3.91
1054 2245 1.550065 CGGCTTACTGTCTCATGACG 58.450 55.000 0.00 0.00 45.70 4.35
1162 2363 4.620589 TCCAATTGTTGTTCATGGCAAT 57.379 36.364 4.43 0.00 33.55 3.56
1196 2411 2.553028 GCCTGTTCAGACCATTTCCTGA 60.553 50.000 1.00 0.00 37.61 3.86
1199 2414 2.076863 GTTCAGACCATTTCCTGACGG 58.923 52.381 0.00 0.00 38.95 4.79
1200 2415 0.613260 TCAGACCATTTCCTGACGGG 59.387 55.000 0.00 0.00 34.78 5.28
1208 2423 2.285368 TCCTGACGGGAAGGGCAT 60.285 61.111 0.00 0.00 41.91 4.40
1209 2424 1.923395 TCCTGACGGGAAGGGCATT 60.923 57.895 0.00 0.00 41.91 3.56
1210 2425 1.000896 CCTGACGGGAAGGGCATTT 60.001 57.895 0.00 0.00 37.23 2.32
1232 2447 4.754322 TGCATTTCGTTATCTGCTGACTA 58.246 39.130 0.00 0.00 35.66 2.59
1268 2483 3.510251 CATCGGTATGCAGAATGTTCG 57.490 47.619 0.00 0.00 39.31 3.95
1286 2501 0.859232 CGTCCATACAAGTATGCGGC 59.141 55.000 13.43 8.37 41.10 6.53
1299 2514 1.229428 ATGCGGCCGACAATATTGAG 58.771 50.000 33.48 14.12 0.00 3.02
1305 2520 2.816087 GGCCGACAATATTGAGATGCAT 59.184 45.455 22.16 0.00 0.00 3.96
1344 2559 6.371548 TCAAGGTGATCGATTACTTTTTCCTG 59.628 38.462 18.52 7.35 0.00 3.86
1346 2561 6.942976 AGGTGATCGATTACTTTTTCCTGTA 58.057 36.000 18.52 0.00 0.00 2.74
1372 2587 6.012658 TGCTACTTGTTCCAGCTTATTTTG 57.987 37.500 0.00 0.00 36.26 2.44
1378 2593 6.041979 ACTTGTTCCAGCTTATTTTGGTTCAT 59.958 34.615 0.00 0.00 35.89 2.57
1381 2596 4.819769 TCCAGCTTATTTTGGTTCATTGC 58.180 39.130 0.00 0.00 35.89 3.56
1382 2597 3.934579 CCAGCTTATTTTGGTTCATTGCC 59.065 43.478 0.00 0.00 0.00 4.52
1394 2609 1.729131 CATTGCCGTTGAACCGTGC 60.729 57.895 0.00 0.00 0.00 5.34
1398 2613 2.637025 CCGTTGAACCGTGCAAGG 59.363 61.111 17.83 17.83 37.30 3.61
1405 2620 4.614993 CGTTGAACCGTGCAAGGATTTATT 60.615 41.667 26.25 8.48 34.12 1.40
1406 2621 5.391097 CGTTGAACCGTGCAAGGATTTATTA 60.391 40.000 26.25 1.46 34.12 0.98
1407 2622 6.560711 GTTGAACCGTGCAAGGATTTATTAT 58.439 36.000 26.25 0.00 34.73 1.28
1408 2623 6.130298 TGAACCGTGCAAGGATTTATTATG 57.870 37.500 26.25 0.00 34.73 1.90
1409 2624 5.067153 TGAACCGTGCAAGGATTTATTATGG 59.933 40.000 26.25 0.00 34.73 2.74
1410 2625 4.787551 ACCGTGCAAGGATTTATTATGGA 58.212 39.130 26.25 0.00 34.73 3.41
1411 2626 4.578928 ACCGTGCAAGGATTTATTATGGAC 59.421 41.667 26.25 0.00 34.73 4.02
1412 2627 4.821805 CCGTGCAAGGATTTATTATGGACT 59.178 41.667 14.14 0.00 31.19 3.85
1413 2628 5.299279 CCGTGCAAGGATTTATTATGGACTT 59.701 40.000 14.14 0.00 31.19 3.01
1449 2664 5.124036 AGTGGCTATTTATTTGGTAGGCA 57.876 39.130 4.09 4.09 45.20 4.75
1464 2679 9.959721 ATTTGGTAGGCATATAATTGGTACTAG 57.040 33.333 0.00 0.00 0.00 2.57
1466 2681 8.500667 TGGTAGGCATATAATTGGTACTAGTT 57.499 34.615 0.00 0.00 0.00 2.24
1469 2684 9.774413 GTAGGCATATAATTGGTACTAGTTTGT 57.226 33.333 0.00 0.00 0.00 2.83
1470 2685 8.677148 AGGCATATAATTGGTACTAGTTTGTG 57.323 34.615 0.00 0.00 0.00 3.33
1471 2686 8.272173 AGGCATATAATTGGTACTAGTTTGTGT 58.728 33.333 0.00 0.00 0.00 3.72
1472 2687 8.899771 GGCATATAATTGGTACTAGTTTGTGTT 58.100 33.333 0.00 0.00 0.00 3.32
1477 2692 7.506328 AATTGGTACTAGTTTGTGTTTCCTC 57.494 36.000 0.00 0.00 0.00 3.71
1478 2693 5.881923 TGGTACTAGTTTGTGTTTCCTCT 57.118 39.130 0.00 0.00 0.00 3.69
1479 2694 5.607477 TGGTACTAGTTTGTGTTTCCTCTG 58.393 41.667 0.00 0.00 0.00 3.35
1480 2695 4.995487 GGTACTAGTTTGTGTTTCCTCTGG 59.005 45.833 0.00 0.00 0.00 3.86
1481 2696 5.221581 GGTACTAGTTTGTGTTTCCTCTGGA 60.222 44.000 0.00 0.00 0.00 3.86
1482 2697 4.962155 ACTAGTTTGTGTTTCCTCTGGAG 58.038 43.478 0.00 0.00 31.21 3.86
1483 2698 3.933861 AGTTTGTGTTTCCTCTGGAGT 57.066 42.857 0.00 0.00 31.21 3.85
1484 2699 4.236527 AGTTTGTGTTTCCTCTGGAGTT 57.763 40.909 0.00 0.00 31.21 3.01
1485 2700 4.600062 AGTTTGTGTTTCCTCTGGAGTTT 58.400 39.130 0.00 0.00 31.21 2.66
1486 2701 4.399303 AGTTTGTGTTTCCTCTGGAGTTTG 59.601 41.667 0.00 0.00 31.21 2.93
1487 2702 2.930950 TGTGTTTCCTCTGGAGTTTGG 58.069 47.619 0.00 0.00 31.21 3.28
1488 2703 2.507886 TGTGTTTCCTCTGGAGTTTGGA 59.492 45.455 0.00 0.00 31.21 3.53
1489 2704 3.138283 TGTGTTTCCTCTGGAGTTTGGAT 59.862 43.478 0.00 0.00 31.21 3.41
1490 2705 4.349636 TGTGTTTCCTCTGGAGTTTGGATA 59.650 41.667 0.00 0.00 31.21 2.59
1491 2706 5.163141 TGTGTTTCCTCTGGAGTTTGGATAA 60.163 40.000 0.00 0.00 31.21 1.75
1492 2707 5.412904 GTGTTTCCTCTGGAGTTTGGATAAG 59.587 44.000 0.00 0.00 31.21 1.73
1493 2708 5.309543 TGTTTCCTCTGGAGTTTGGATAAGA 59.690 40.000 0.00 0.00 31.21 2.10
1494 2709 6.012508 TGTTTCCTCTGGAGTTTGGATAAGAT 60.013 38.462 0.00 0.00 31.21 2.40
1495 2710 7.182026 TGTTTCCTCTGGAGTTTGGATAAGATA 59.818 37.037 0.00 0.00 31.21 1.98
1496 2711 6.985653 TCCTCTGGAGTTTGGATAAGATAG 57.014 41.667 0.00 0.00 0.00 2.08
1497 2712 5.841237 TCCTCTGGAGTTTGGATAAGATAGG 59.159 44.000 0.00 0.00 0.00 2.57
1498 2713 5.841237 CCTCTGGAGTTTGGATAAGATAGGA 59.159 44.000 0.00 0.00 0.00 2.94
1499 2714 6.327626 CCTCTGGAGTTTGGATAAGATAGGAA 59.672 42.308 0.00 0.00 0.00 3.36
1500 2715 7.017056 CCTCTGGAGTTTGGATAAGATAGGAAT 59.983 40.741 0.00 0.00 0.00 3.01
1501 2716 8.337118 TCTGGAGTTTGGATAAGATAGGAATT 57.663 34.615 0.00 0.00 0.00 2.17
1502 2717 8.213679 TCTGGAGTTTGGATAAGATAGGAATTG 58.786 37.037 0.00 0.00 0.00 2.32
1503 2718 6.772716 TGGAGTTTGGATAAGATAGGAATTGC 59.227 38.462 0.00 0.00 0.00 3.56
1504 2719 7.001073 GGAGTTTGGATAAGATAGGAATTGCT 58.999 38.462 4.41 4.41 0.00 3.91
1505 2720 7.174080 GGAGTTTGGATAAGATAGGAATTGCTC 59.826 40.741 1.37 0.00 0.00 4.26
1506 2721 7.001073 AGTTTGGATAAGATAGGAATTGCTCC 58.999 38.462 1.37 0.00 45.81 4.70
1518 2733 5.248380 GGAATTGCTCCATATCCTTACCT 57.752 43.478 0.00 0.00 44.67 3.08
1519 2734 5.635120 GGAATTGCTCCATATCCTTACCTT 58.365 41.667 0.00 0.00 44.67 3.50
1520 2735 6.071320 GGAATTGCTCCATATCCTTACCTTT 58.929 40.000 0.00 0.00 44.67 3.11
1521 2736 6.015940 GGAATTGCTCCATATCCTTACCTTTG 60.016 42.308 0.00 0.00 44.67 2.77
1522 2737 4.437682 TGCTCCATATCCTTACCTTTGG 57.562 45.455 0.00 0.00 0.00 3.28
1523 2738 3.149981 GCTCCATATCCTTACCTTTGGC 58.850 50.000 0.00 0.00 0.00 4.52
1524 2739 3.756117 CTCCATATCCTTACCTTTGGCC 58.244 50.000 0.00 0.00 0.00 5.36
1525 2740 2.445525 TCCATATCCTTACCTTTGGCCC 59.554 50.000 0.00 0.00 0.00 5.80
1526 2741 2.490902 CCATATCCTTACCTTTGGCCCC 60.491 54.545 0.00 0.00 0.00 5.80
1527 2742 2.296943 TATCCTTACCTTTGGCCCCT 57.703 50.000 0.00 0.00 0.00 4.79
1528 2743 0.631212 ATCCTTACCTTTGGCCCCTG 59.369 55.000 0.00 0.00 0.00 4.45
1529 2744 0.476808 TCCTTACCTTTGGCCCCTGA 60.477 55.000 0.00 0.00 0.00 3.86
1530 2745 0.323451 CCTTACCTTTGGCCCCTGAC 60.323 60.000 0.00 0.00 0.00 3.51
1531 2746 0.698818 CTTACCTTTGGCCCCTGACT 59.301 55.000 0.00 0.00 0.00 3.41
1532 2747 1.913419 CTTACCTTTGGCCCCTGACTA 59.087 52.381 0.00 0.00 0.00 2.59
1533 2748 2.047769 TACCTTTGGCCCCTGACTAA 57.952 50.000 0.00 0.00 0.00 2.24
1534 2749 1.382914 ACCTTTGGCCCCTGACTAAT 58.617 50.000 0.00 0.00 0.00 1.73
1535 2750 1.716503 ACCTTTGGCCCCTGACTAATT 59.283 47.619 0.00 0.00 0.00 1.40
1536 2751 2.111792 ACCTTTGGCCCCTGACTAATTT 59.888 45.455 0.00 0.00 0.00 1.82
1537 2752 2.497273 CCTTTGGCCCCTGACTAATTTG 59.503 50.000 0.00 0.00 0.00 2.32
1538 2753 2.990740 TTGGCCCCTGACTAATTTGT 57.009 45.000 0.00 0.00 0.00 2.83
1539 2754 2.214376 TGGCCCCTGACTAATTTGTG 57.786 50.000 0.00 0.00 0.00 3.33
1540 2755 1.707989 TGGCCCCTGACTAATTTGTGA 59.292 47.619 0.00 0.00 0.00 3.58
1541 2756 2.311542 TGGCCCCTGACTAATTTGTGAT 59.688 45.455 0.00 0.00 0.00 3.06
1542 2757 3.245586 TGGCCCCTGACTAATTTGTGATT 60.246 43.478 0.00 0.00 0.00 2.57
1543 2758 3.381590 GGCCCCTGACTAATTTGTGATTC 59.618 47.826 0.00 0.00 0.00 2.52
1544 2759 3.381590 GCCCCTGACTAATTTGTGATTCC 59.618 47.826 0.00 0.00 0.00 3.01
1545 2760 3.954258 CCCCTGACTAATTTGTGATTCCC 59.046 47.826 0.00 0.00 0.00 3.97
1546 2761 4.325344 CCCCTGACTAATTTGTGATTCCCT 60.325 45.833 0.00 0.00 0.00 4.20
1547 2762 4.641989 CCCTGACTAATTTGTGATTCCCTG 59.358 45.833 0.00 0.00 0.00 4.45
1548 2763 5.256474 CCTGACTAATTTGTGATTCCCTGT 58.744 41.667 0.00 0.00 0.00 4.00
1552 2767 7.432869 TGACTAATTTGTGATTCCCTGTTTTG 58.567 34.615 0.00 0.00 0.00 2.44
1563 2778 7.119116 GTGATTCCCTGTTTTGAAACTTGTTTT 59.881 33.333 7.97 0.00 39.59 2.43
1564 2779 6.793492 TTCCCTGTTTTGAAACTTGTTTTG 57.207 33.333 7.97 0.00 39.59 2.44
1568 2783 3.753797 TGTTTTGAAACTTGTTTTGGGGC 59.246 39.130 7.97 0.00 39.59 5.80
1578 2793 3.019799 TGTTTTGGGGCAAGTTCAGTA 57.980 42.857 0.00 0.00 0.00 2.74
1579 2794 3.571590 TGTTTTGGGGCAAGTTCAGTAT 58.428 40.909 0.00 0.00 0.00 2.12
1580 2795 3.964031 TGTTTTGGGGCAAGTTCAGTATT 59.036 39.130 0.00 0.00 0.00 1.89
1581 2796 4.202202 TGTTTTGGGGCAAGTTCAGTATTG 60.202 41.667 0.00 0.00 0.00 1.90
1582 2797 2.969821 TGGGGCAAGTTCAGTATTGT 57.030 45.000 0.00 0.00 0.00 2.71
1583 2798 3.237268 TGGGGCAAGTTCAGTATTGTT 57.763 42.857 0.00 0.00 0.00 2.83
1584 2799 2.890311 TGGGGCAAGTTCAGTATTGTTG 59.110 45.455 0.00 0.00 0.00 3.33
1585 2800 3.153919 GGGGCAAGTTCAGTATTGTTGA 58.846 45.455 0.00 0.00 0.00 3.18
1592 2807 7.698130 GGCAAGTTCAGTATTGTTGATATTGTC 59.302 37.037 0.00 0.00 31.75 3.18
1633 2848 1.408702 TGCAACTCCAAAAGGTGAAGC 59.591 47.619 0.00 0.00 46.43 3.86
1637 2852 4.021981 GCAACTCCAAAAGGTGAAGCTAAT 60.022 41.667 0.00 0.00 46.43 1.73
1655 2870 4.286291 GCTAATAGTAATAGCCCCACCAGT 59.714 45.833 6.01 0.00 39.87 4.00
1656 2871 5.221864 GCTAATAGTAATAGCCCCACCAGTT 60.222 44.000 6.01 0.00 39.87 3.16
1701 2916 3.629142 AAGGTGAAGGTCCGGATTTAG 57.371 47.619 7.81 0.00 0.00 1.85
1703 2918 2.236395 AGGTGAAGGTCCGGATTTAGTG 59.764 50.000 7.81 0.00 0.00 2.74
1762 2977 7.934120 AGAGTTCACTTGAGCTAGTTAATGTTT 59.066 33.333 0.00 0.00 35.71 2.83
1767 2982 8.898761 TCACTTGAGCTAGTTAATGTTTTGAAA 58.101 29.630 0.00 0.00 0.00 2.69
1846 3061 7.052873 ACTACTCTAGCTTCGGTCTATGTAAA 58.947 38.462 0.00 0.00 0.00 2.01
1895 3136 8.121305 TGCATGATTGTTTATTAGTGTCCTTT 57.879 30.769 0.00 0.00 0.00 3.11
1912 3153 6.914757 GTGTCCTTTCTTGAACTGATCTTTTG 59.085 38.462 0.00 0.00 0.00 2.44
1917 3158 9.273016 CCTTTCTTGAACTGATCTTTTGTACTA 57.727 33.333 0.00 0.00 0.00 1.82
1921 3162 9.862371 TCTTGAACTGATCTTTTGTACTATCTC 57.138 33.333 0.00 0.00 0.00 2.75
1922 3163 9.868277 CTTGAACTGATCTTTTGTACTATCTCT 57.132 33.333 0.00 0.00 0.00 3.10
1923 3164 9.645059 TTGAACTGATCTTTTGTACTATCTCTG 57.355 33.333 0.00 0.00 0.00 3.35
1991 3232 7.941795 AACGTCTTATATTTTGATACGGAGG 57.058 36.000 0.00 0.00 33.44 4.30
1992 3233 6.453092 ACGTCTTATATTTTGATACGGAGGG 58.547 40.000 0.00 0.00 33.44 4.30
1994 3320 6.807230 CGTCTTATATTTTGATACGGAGGGAG 59.193 42.308 0.00 0.00 0.00 4.30
1997 3323 8.800332 TCTTATATTTTGATACGGAGGGAGTAC 58.200 37.037 0.00 0.00 0.00 2.73
1998 3324 6.989155 ATATTTTGATACGGAGGGAGTACA 57.011 37.500 0.00 0.00 0.00 2.90
2002 3328 4.730949 TGATACGGAGGGAGTACAAAAG 57.269 45.455 0.00 0.00 0.00 2.27
2003 3329 4.346730 TGATACGGAGGGAGTACAAAAGA 58.653 43.478 0.00 0.00 0.00 2.52
2027 3353 7.283127 AGACTGTGAAACACATGTTATTTGAGT 59.717 33.333 9.13 8.12 45.67 3.41
2041 3528 3.896648 TTTGAGTAAAAGGCTCTTGCG 57.103 42.857 0.00 0.00 40.82 4.85
2066 3553 3.790089 ACCTACTTCTTTGGTCTTGGG 57.210 47.619 0.00 0.00 0.00 4.12
2067 3554 3.053826 ACCTACTTCTTTGGTCTTGGGT 58.946 45.455 0.00 0.00 0.00 4.51
2068 3555 3.072622 ACCTACTTCTTTGGTCTTGGGTC 59.927 47.826 0.00 0.00 0.00 4.46
2128 3628 8.236586 CGTTCCTTTGAATCTTTGATGATTACA 58.763 33.333 0.00 0.00 36.86 2.41
2142 3642 5.479724 TGATGATTACATGGTTCTTTTGGCA 59.520 36.000 0.00 0.00 36.82 4.92
2287 3787 6.989659 ACGAAGTAACCTCAGATTTCACTTA 58.010 36.000 0.00 0.00 41.94 2.24
2335 3838 7.788026 ACCATGGTTTATAGTGATCTAAACGA 58.212 34.615 13.00 6.08 38.25 3.85
2421 3935 2.038952 TGTACTCTGTTTGGCTGATGCT 59.961 45.455 0.00 0.00 39.59 3.79
2444 3963 6.820152 GCTTGCAATGAATATCCTTTCCTTTT 59.180 34.615 0.00 0.00 0.00 2.27
2447 3969 9.874205 TTGCAATGAATATCCTTTCCTTTTAAG 57.126 29.630 0.00 0.00 0.00 1.85
2466 3988 9.476761 CTTTTAAGAAAAACACAAACAATCTGC 57.523 29.630 0.00 0.00 31.37 4.26
2469 3991 6.651755 AGAAAAACACAAACAATCTGCTTG 57.348 33.333 0.00 0.00 40.90 4.01
2486 4008 6.349300 TCTGCTTGTGTTTCTAATATCCTCC 58.651 40.000 0.00 0.00 0.00 4.30
2516 4038 4.215613 ACAATTTTTAGGGAGCTTCGACAC 59.784 41.667 0.00 0.00 0.00 3.67
2528 4050 2.224079 GCTTCGACACTGCATTTTCAGA 59.776 45.455 0.00 0.00 37.51 3.27
2552 4074 4.448210 TCCCAGTGCCGAAATAATAAGAC 58.552 43.478 0.00 0.00 0.00 3.01
2553 4075 4.080807 TCCCAGTGCCGAAATAATAAGACA 60.081 41.667 0.00 0.00 0.00 3.41
2558 4080 5.812642 AGTGCCGAAATAATAAGACACAGAG 59.187 40.000 0.00 0.00 0.00 3.35
2573 4095 1.076024 ACAGAGCAATCCCCAATGTGT 59.924 47.619 0.00 0.00 0.00 3.72
2740 4262 2.646930 GATGAGGTGGATGCATTGTCA 58.353 47.619 0.00 0.25 0.00 3.58
2884 4406 3.978571 GAGGGGAAACGAGGCCTGC 62.979 68.421 12.00 0.00 0.00 4.85
2885 4407 4.344865 GGGGAAACGAGGCCTGCA 62.345 66.667 12.00 0.00 0.00 4.41
2905 4427 3.041211 CACAGGAGATGAGGGTGGATAA 58.959 50.000 0.00 0.00 0.00 1.75
2908 4430 4.166539 CAGGAGATGAGGGTGGATAAGAT 58.833 47.826 0.00 0.00 0.00 2.40
2932 6405 4.762289 AGTGTTAGTGAATGAGATCCCC 57.238 45.455 0.00 0.00 0.00 4.81
2959 6432 4.067896 CTGCAAGCTCTCTTCAAAACCTA 58.932 43.478 0.00 0.00 0.00 3.08
3026 6504 4.457603 CCGTGTCATTTTGTTGGGAAGATA 59.542 41.667 0.00 0.00 0.00 1.98
3047 6525 2.286872 CTTTCTTGCGATGAGATGCCT 58.713 47.619 0.00 0.00 0.00 4.75
3124 6602 3.892284 TGAAACTGAACCTGCTTAACCA 58.108 40.909 0.00 0.00 0.00 3.67
3126 6604 4.278170 TGAAACTGAACCTGCTTAACCATG 59.722 41.667 0.00 0.00 0.00 3.66
3132 6610 4.042311 TGAACCTGCTTAACCATGACCTTA 59.958 41.667 0.00 0.00 0.00 2.69
3143 6621 4.265073 ACCATGACCTTAATTCACTCTGC 58.735 43.478 0.00 0.00 0.00 4.26
3145 6623 4.334759 CCATGACCTTAATTCACTCTGCTG 59.665 45.833 0.00 0.00 0.00 4.41
3149 6627 5.221722 TGACCTTAATTCACTCTGCTGTTCT 60.222 40.000 0.00 0.00 0.00 3.01
3157 6635 1.133668 ACTCTGCTGTTCTTGCCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
3166 6644 0.185901 TCTTGCCCTTTCAGTGCCTT 59.814 50.000 0.00 0.00 0.00 4.35
3168 6646 0.106268 TTGCCCTTTCAGTGCCTTCA 60.106 50.000 0.00 0.00 0.00 3.02
3180 6665 3.813724 CAGTGCCTTCATATGGAGTGATG 59.186 47.826 10.23 0.14 0.00 3.07
3183 6668 4.752101 GTGCCTTCATATGGAGTGATGTAC 59.248 45.833 10.23 0.97 0.00 2.90
3186 6671 5.246203 GCCTTCATATGGAGTGATGTACCTA 59.754 44.000 10.23 0.00 0.00 3.08
3187 6672 6.573289 GCCTTCATATGGAGTGATGTACCTAG 60.573 46.154 10.23 0.00 0.00 3.02
3201 6686 4.901868 TGTACCTAGCGGTGAAAAAGAAT 58.098 39.130 0.00 0.00 45.18 2.40
3258 6743 0.107456 CATTGGTCGATGAGGAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
3264 6749 2.812619 CGATGAGGAGGGGGCCTTC 61.813 68.421 0.84 1.27 38.73 3.46
3335 6820 8.902540 TTCTTCTCTAAATAAACACAGCTTCA 57.097 30.769 0.00 0.00 0.00 3.02
3337 6822 6.706055 TCTCTAAATAAACACAGCTTCACG 57.294 37.500 0.00 0.00 0.00 4.35
3338 6823 5.637810 TCTCTAAATAAACACAGCTTCACGG 59.362 40.000 0.00 0.00 0.00 4.94
3339 6824 2.989422 AATAAACACAGCTTCACGGC 57.011 45.000 0.00 0.00 0.00 5.68
3341 6826 2.823924 TAAACACAGCTTCACGGCTA 57.176 45.000 0.00 0.00 41.00 3.93
3342 6827 1.512926 AAACACAGCTTCACGGCTAG 58.487 50.000 0.00 0.00 41.00 3.42
3344 6829 1.374631 CACAGCTTCACGGCTAGCA 60.375 57.895 18.24 0.00 41.00 3.49
3345 6830 1.079543 ACAGCTTCACGGCTAGCAG 60.080 57.895 18.24 15.90 41.00 4.24
3350 6842 1.535462 GCTTCACGGCTAGCAGAAAAA 59.465 47.619 22.16 10.69 37.35 1.94
3352 6844 2.543777 TCACGGCTAGCAGAAAAACT 57.456 45.000 22.16 0.00 0.00 2.66
3408 6900 3.009301 ACTTAGACGAATAATCCGGCG 57.991 47.619 0.00 0.00 40.56 6.46
3410 6902 2.983402 TAGACGAATAATCCGGCGAG 57.017 50.000 9.30 0.00 40.56 5.03
3417 6909 1.399714 ATAATCCGGCGAGTGTCTGA 58.600 50.000 9.30 0.00 0.00 3.27
3422 6914 1.078759 CCGGCGAGTGTCTGACATTC 61.079 60.000 19.76 19.76 32.30 2.67
3433 6925 4.919754 GTGTCTGACATTCTTTGCCATTTC 59.080 41.667 14.37 0.00 0.00 2.17
3437 6929 4.309099 TGACATTCTTTGCCATTTCTTGC 58.691 39.130 0.00 0.00 0.00 4.01
3448 6940 4.168760 GCCATTTCTTGCATGTAGTGTTC 58.831 43.478 0.00 0.00 0.00 3.18
3458 6950 4.632688 TGCATGTAGTGTTCATCATGTCAG 59.367 41.667 0.00 0.00 39.54 3.51
3621 7119 1.002544 ACCTAAGTGCTGAAGCCACTC 59.997 52.381 0.00 0.00 41.18 3.51
3641 7140 5.416952 CACTCATGAGCTCAAAATAAAGGGT 59.583 40.000 22.50 7.89 0.00 4.34
3673 7177 2.743636 TACTTGAAGTCTGAAGCCCG 57.256 50.000 0.00 0.00 0.00 6.13
3819 8110 3.277142 ACTTTTACCTATTCCTGGCCG 57.723 47.619 0.00 0.00 0.00 6.13
3835 8140 3.426615 TGGCCGTATCATTCCTTTTTGT 58.573 40.909 0.00 0.00 0.00 2.83
3859 8164 2.639286 CTTTTCGCGTGCTTGCCT 59.361 55.556 5.77 0.00 0.00 4.75
4088 8407 8.506168 TTAACTGTGCTATAAAATAGCTTGCT 57.494 30.769 17.29 0.00 40.95 3.91
4181 8513 2.754012 AGAGGAGACAGATGGAGAGG 57.246 55.000 0.00 0.00 0.00 3.69
4189 8521 0.617413 CAGATGGAGAGGTTGCCTGT 59.383 55.000 0.00 0.00 31.76 4.00
4301 8637 6.202570 GTCTCATGCCATCTAGAGATTTTGTC 59.797 42.308 0.00 0.00 39.13 3.18
4318 8654 5.627499 TTTGTCATATTGTTCTGCCTGAC 57.373 39.130 0.00 0.00 34.91 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 3.428282 GGTAAACACCCAGCGGCG 61.428 66.667 0.51 0.51 0.00 6.46
356 371 2.672996 GTTCCACACATGCCGGCT 60.673 61.111 29.70 10.60 0.00 5.52
363 378 4.715523 CGGCCGGGTTCCACACAT 62.716 66.667 20.10 0.00 0.00 3.21
409 430 1.227380 GCCTCTAGCATGACCGTGG 60.227 63.158 0.00 0.00 42.97 4.94
528 555 5.160641 GTTCTCTGACAGTCTGATTCACTC 58.839 45.833 6.91 0.00 0.00 3.51
531 558 3.057245 CCGTTCTCTGACAGTCTGATTCA 60.057 47.826 6.91 0.00 0.00 2.57
572 599 2.873133 AATGGACGAGAATCCGAGTC 57.127 50.000 0.00 0.00 42.24 3.36
573 600 2.761208 AGAAATGGACGAGAATCCGAGT 59.239 45.455 0.00 0.00 42.24 4.18
574 601 3.119291 CAGAAATGGACGAGAATCCGAG 58.881 50.000 0.00 0.00 42.24 4.63
575 602 2.738643 GCAGAAATGGACGAGAATCCGA 60.739 50.000 0.00 0.00 42.24 4.55
576 603 1.594862 GCAGAAATGGACGAGAATCCG 59.405 52.381 0.00 0.00 42.24 4.18
577 604 2.632377 TGCAGAAATGGACGAGAATCC 58.368 47.619 0.00 0.00 39.45 3.01
601 628 0.179225 GATGTTCGCGCGTGTGAAAT 60.179 50.000 30.98 19.20 45.53 2.17
647 681 0.915364 ATCCAAGGAAGGAGGCAGTC 59.085 55.000 0.00 0.00 41.90 3.51
738 781 1.070376 GTTTTACCTGCGTCAACCGAC 60.070 52.381 0.00 0.00 39.56 4.79
739 782 1.219646 GTTTTACCTGCGTCAACCGA 58.780 50.000 0.00 0.00 39.56 4.69
740 783 0.236449 GGTTTTACCTGCGTCAACCG 59.764 55.000 0.00 0.00 34.73 4.44
771 814 4.394300 AGCATCGGAAGACAAGATCAAAAG 59.606 41.667 0.00 0.00 46.97 2.27
848 892 0.172803 AACAGAGTAACTAGGCCGCG 59.827 55.000 0.00 0.00 0.00 6.46
873 926 7.048512 AGACATTAACAGTGGCCTAAATAGAC 58.951 38.462 3.32 0.00 0.00 2.59
880 933 7.455058 TCTAAAAAGACATTAACAGTGGCCTA 58.545 34.615 3.32 0.00 0.00 3.93
881 934 6.303839 TCTAAAAAGACATTAACAGTGGCCT 58.696 36.000 3.32 0.00 0.00 5.19
918 973 1.601477 CACACATCAGCAGTGCCCA 60.601 57.895 12.58 0.00 40.59 5.36
922 977 1.161843 TGCATCACACATCAGCAGTG 58.838 50.000 0.00 0.00 42.56 3.66
940 995 8.081633 TCACAAATTAGGTTGAAAGCAATAGTG 58.918 33.333 0.00 0.00 36.22 2.74
946 1001 9.255304 GTAAAATCACAAATTAGGTTGAAAGCA 57.745 29.630 0.00 0.00 32.59 3.91
971 1026 3.194542 GCTTATGGTCAGTCTGAGACAGT 59.805 47.826 15.86 0.00 37.74 3.55
989 2180 1.643868 CGACCGCATTGCCTTGCTTA 61.644 55.000 2.41 0.00 40.54 3.09
1012 2203 2.202987 GCACTGGGAGAGCATCGG 60.203 66.667 0.00 0.00 42.67 4.18
1015 2206 2.729479 CGAGGCACTGGGAGAGCAT 61.729 63.158 0.00 0.00 41.55 3.79
1054 2245 2.745492 GCAGTGAGCTGTGGCCTC 60.745 66.667 3.32 0.00 44.32 4.70
1117 2318 2.040544 GCAACCTGTGATGGGACGG 61.041 63.158 0.00 0.00 0.00 4.79
1162 2363 2.171659 TGAACAGGCAGGACTTGTAACA 59.828 45.455 0.00 0.00 0.00 2.41
1196 2411 0.904394 AATGCAAATGCCCTTCCCGT 60.904 50.000 2.46 0.00 41.18 5.28
1199 2414 1.066929 ACGAAATGCAAATGCCCTTCC 60.067 47.619 2.46 0.00 41.18 3.46
1200 2415 2.368655 ACGAAATGCAAATGCCCTTC 57.631 45.000 2.46 4.95 41.18 3.46
1205 2420 4.027132 CAGCAGATAACGAAATGCAAATGC 60.027 41.667 0.00 0.00 41.14 3.56
1206 2421 5.228635 GTCAGCAGATAACGAAATGCAAATG 59.771 40.000 0.00 0.00 41.14 2.32
1207 2422 5.124457 AGTCAGCAGATAACGAAATGCAAAT 59.876 36.000 0.00 0.00 41.14 2.32
1208 2423 4.455533 AGTCAGCAGATAACGAAATGCAAA 59.544 37.500 0.00 0.00 41.14 3.68
1209 2424 4.002982 AGTCAGCAGATAACGAAATGCAA 58.997 39.130 0.00 0.00 41.14 4.08
1210 2425 3.599343 AGTCAGCAGATAACGAAATGCA 58.401 40.909 0.00 0.00 41.14 3.96
1268 2483 1.226746 GGCCGCATACTTGTATGGAC 58.773 55.000 18.73 5.36 0.00 4.02
1286 2501 3.365666 GCCATGCATCTCAATATTGTCGG 60.366 47.826 14.97 7.27 0.00 4.79
1305 2520 6.372381 CGATCACCTTGAATATATTCATGCCA 59.628 38.462 25.05 11.96 45.30 4.92
1329 2544 6.481954 AGCAAGTACAGGAAAAAGTAATCG 57.518 37.500 0.00 0.00 0.00 3.34
1344 2559 3.665190 AGCTGGAACAAGTAGCAAGTAC 58.335 45.455 0.00 0.00 38.70 2.73
1346 2561 2.938956 AGCTGGAACAAGTAGCAAGT 57.061 45.000 0.00 0.00 38.70 3.16
1378 2593 2.329678 CTTGCACGGTTCAACGGCAA 62.330 55.000 11.07 11.07 42.90 4.52
1381 2596 1.234615 ATCCTTGCACGGTTCAACGG 61.235 55.000 9.36 0.00 38.39 4.44
1382 2597 0.591170 AATCCTTGCACGGTTCAACG 59.409 50.000 9.36 0.00 40.31 4.10
1425 2640 6.848069 TGCCTACCAAATAAATAGCCACTAT 58.152 36.000 0.00 0.00 0.00 2.12
1440 2655 8.500667 ACTAGTACCAATTATATGCCTACCAA 57.499 34.615 0.00 0.00 0.00 3.67
1460 2675 4.409247 ACTCCAGAGGAAACACAAACTAGT 59.591 41.667 0.00 0.00 0.00 2.57
1461 2676 4.962155 ACTCCAGAGGAAACACAAACTAG 58.038 43.478 0.00 0.00 0.00 2.57
1463 2678 3.933861 ACTCCAGAGGAAACACAAACT 57.066 42.857 0.00 0.00 0.00 2.66
1464 2679 4.440112 CCAAACTCCAGAGGAAACACAAAC 60.440 45.833 0.00 0.00 0.00 2.93
1466 2681 3.053991 TCCAAACTCCAGAGGAAACACAA 60.054 43.478 0.00 0.00 0.00 3.33
1469 2684 5.309543 TCTTATCCAAACTCCAGAGGAAACA 59.690 40.000 0.00 0.00 33.17 2.83
1470 2685 5.805728 TCTTATCCAAACTCCAGAGGAAAC 58.194 41.667 0.00 0.00 33.17 2.78
1471 2686 6.642733 ATCTTATCCAAACTCCAGAGGAAA 57.357 37.500 0.00 0.00 33.17 3.13
1472 2687 6.327626 CCTATCTTATCCAAACTCCAGAGGAA 59.672 42.308 0.00 0.00 33.17 3.36
1473 2688 5.841237 CCTATCTTATCCAAACTCCAGAGGA 59.159 44.000 0.00 0.00 34.12 3.71
1474 2689 5.841237 TCCTATCTTATCCAAACTCCAGAGG 59.159 44.000 0.00 0.00 0.00 3.69
1475 2690 6.985653 TCCTATCTTATCCAAACTCCAGAG 57.014 41.667 0.00 0.00 0.00 3.35
1476 2691 7.937700 ATTCCTATCTTATCCAAACTCCAGA 57.062 36.000 0.00 0.00 0.00 3.86
1477 2692 7.040823 GCAATTCCTATCTTATCCAAACTCCAG 60.041 40.741 0.00 0.00 0.00 3.86
1478 2693 6.772716 GCAATTCCTATCTTATCCAAACTCCA 59.227 38.462 0.00 0.00 0.00 3.86
1479 2694 7.001073 AGCAATTCCTATCTTATCCAAACTCC 58.999 38.462 0.00 0.00 0.00 3.85
1480 2695 7.174080 GGAGCAATTCCTATCTTATCCAAACTC 59.826 40.741 0.00 0.00 43.16 3.01
1481 2696 7.001073 GGAGCAATTCCTATCTTATCCAAACT 58.999 38.462 0.00 0.00 43.16 2.66
1482 2697 6.772716 TGGAGCAATTCCTATCTTATCCAAAC 59.227 38.462 0.00 0.00 46.92 2.93
1483 2698 6.910191 TGGAGCAATTCCTATCTTATCCAAA 58.090 36.000 0.00 0.00 46.92 3.28
1484 2699 6.514012 TGGAGCAATTCCTATCTTATCCAA 57.486 37.500 0.00 0.00 46.92 3.53
1485 2700 6.708885 ATGGAGCAATTCCTATCTTATCCA 57.291 37.500 0.00 0.00 46.92 3.41
1486 2701 7.936301 GGATATGGAGCAATTCCTATCTTATCC 59.064 40.741 7.67 7.67 46.92 2.59
1487 2702 8.713036 AGGATATGGAGCAATTCCTATCTTATC 58.287 37.037 0.00 0.00 46.92 1.75
1488 2703 8.635647 AGGATATGGAGCAATTCCTATCTTAT 57.364 34.615 0.00 0.00 46.92 1.73
1489 2704 8.454859 AAGGATATGGAGCAATTCCTATCTTA 57.545 34.615 0.00 0.00 46.92 2.10
1490 2705 6.966637 AGGATATGGAGCAATTCCTATCTT 57.033 37.500 0.00 0.00 46.92 2.40
1491 2706 6.966637 AAGGATATGGAGCAATTCCTATCT 57.033 37.500 0.00 0.00 46.92 1.98
1492 2707 7.051000 GGTAAGGATATGGAGCAATTCCTATC 58.949 42.308 0.00 0.00 46.92 2.08
1493 2708 6.737608 AGGTAAGGATATGGAGCAATTCCTAT 59.262 38.462 0.00 0.00 46.92 2.57
1494 2709 6.091555 AGGTAAGGATATGGAGCAATTCCTA 58.908 40.000 0.00 0.00 46.92 2.94
1495 2710 4.916424 AGGTAAGGATATGGAGCAATTCCT 59.084 41.667 0.00 0.00 46.92 3.36
1496 2711 5.248380 AGGTAAGGATATGGAGCAATTCC 57.752 43.478 0.00 0.00 46.98 3.01
1497 2712 6.015940 CCAAAGGTAAGGATATGGAGCAATTC 60.016 42.308 0.00 0.00 0.00 2.17
1498 2713 5.835280 CCAAAGGTAAGGATATGGAGCAATT 59.165 40.000 0.00 0.00 0.00 2.32
1499 2714 5.388654 CCAAAGGTAAGGATATGGAGCAAT 58.611 41.667 0.00 0.00 0.00 3.56
1500 2715 4.792068 CCAAAGGTAAGGATATGGAGCAA 58.208 43.478 0.00 0.00 0.00 3.91
1501 2716 3.435026 GCCAAAGGTAAGGATATGGAGCA 60.435 47.826 0.00 0.00 0.00 4.26
1502 2717 3.149981 GCCAAAGGTAAGGATATGGAGC 58.850 50.000 0.00 0.00 0.00 4.70
1503 2718 3.498661 GGGCCAAAGGTAAGGATATGGAG 60.499 52.174 4.39 0.00 0.00 3.86
1504 2719 2.445525 GGGCCAAAGGTAAGGATATGGA 59.554 50.000 4.39 0.00 0.00 3.41
1505 2720 2.490902 GGGGCCAAAGGTAAGGATATGG 60.491 54.545 4.39 0.00 0.00 2.74
1506 2721 2.447047 AGGGGCCAAAGGTAAGGATATG 59.553 50.000 4.39 0.00 0.00 1.78
1507 2722 2.447047 CAGGGGCCAAAGGTAAGGATAT 59.553 50.000 4.39 0.00 0.00 1.63
1508 2723 1.850345 CAGGGGCCAAAGGTAAGGATA 59.150 52.381 4.39 0.00 0.00 2.59
1509 2724 0.631212 CAGGGGCCAAAGGTAAGGAT 59.369 55.000 4.39 0.00 0.00 3.24
1510 2725 0.476808 TCAGGGGCCAAAGGTAAGGA 60.477 55.000 4.39 0.00 0.00 3.36
1511 2726 0.323451 GTCAGGGGCCAAAGGTAAGG 60.323 60.000 4.39 0.00 0.00 2.69
1512 2727 0.698818 AGTCAGGGGCCAAAGGTAAG 59.301 55.000 4.39 0.00 0.00 2.34
1513 2728 2.047769 TAGTCAGGGGCCAAAGGTAA 57.952 50.000 4.39 0.00 0.00 2.85
1514 2729 2.047769 TTAGTCAGGGGCCAAAGGTA 57.952 50.000 4.39 0.00 0.00 3.08
1515 2730 1.382914 ATTAGTCAGGGGCCAAAGGT 58.617 50.000 4.39 0.00 0.00 3.50
1516 2731 2.497273 CAAATTAGTCAGGGGCCAAAGG 59.503 50.000 4.39 0.00 0.00 3.11
1517 2732 3.056607 CACAAATTAGTCAGGGGCCAAAG 60.057 47.826 4.39 0.00 0.00 2.77
1518 2733 2.896685 CACAAATTAGTCAGGGGCCAAA 59.103 45.455 4.39 0.00 0.00 3.28
1519 2734 2.109128 TCACAAATTAGTCAGGGGCCAA 59.891 45.455 4.39 0.00 0.00 4.52
1520 2735 1.707989 TCACAAATTAGTCAGGGGCCA 59.292 47.619 4.39 0.00 0.00 5.36
1521 2736 2.507407 TCACAAATTAGTCAGGGGCC 57.493 50.000 0.00 0.00 0.00 5.80
1522 2737 3.381590 GGAATCACAAATTAGTCAGGGGC 59.618 47.826 0.00 0.00 0.00 5.80
1523 2738 3.954258 GGGAATCACAAATTAGTCAGGGG 59.046 47.826 0.00 0.00 0.00 4.79
1524 2739 4.641989 CAGGGAATCACAAATTAGTCAGGG 59.358 45.833 0.00 0.00 0.00 4.45
1525 2740 5.256474 ACAGGGAATCACAAATTAGTCAGG 58.744 41.667 0.00 0.00 0.00 3.86
1526 2741 6.824305 AACAGGGAATCACAAATTAGTCAG 57.176 37.500 0.00 0.00 0.00 3.51
1527 2742 7.286546 TCAAAACAGGGAATCACAAATTAGTCA 59.713 33.333 0.00 0.00 0.00 3.41
1528 2743 7.657336 TCAAAACAGGGAATCACAAATTAGTC 58.343 34.615 0.00 0.00 0.00 2.59
1529 2744 7.595819 TCAAAACAGGGAATCACAAATTAGT 57.404 32.000 0.00 0.00 0.00 2.24
1530 2745 8.764287 GTTTCAAAACAGGGAATCACAAATTAG 58.236 33.333 0.81 0.00 38.74 1.73
1531 2746 8.482128 AGTTTCAAAACAGGGAATCACAAATTA 58.518 29.630 8.23 0.00 41.30 1.40
1532 2747 7.337938 AGTTTCAAAACAGGGAATCACAAATT 58.662 30.769 8.23 0.00 41.30 1.82
1533 2748 6.888105 AGTTTCAAAACAGGGAATCACAAAT 58.112 32.000 8.23 0.00 41.30 2.32
1534 2749 6.293004 AGTTTCAAAACAGGGAATCACAAA 57.707 33.333 8.23 0.00 41.30 2.83
1535 2750 5.930837 AGTTTCAAAACAGGGAATCACAA 57.069 34.783 8.23 0.00 41.30 3.33
1536 2751 5.186797 ACAAGTTTCAAAACAGGGAATCACA 59.813 36.000 8.23 0.00 41.30 3.58
1537 2752 5.660460 ACAAGTTTCAAAACAGGGAATCAC 58.340 37.500 8.23 0.00 41.30 3.06
1538 2753 5.930837 ACAAGTTTCAAAACAGGGAATCA 57.069 34.783 8.23 0.00 41.30 2.57
1539 2754 7.413988 CCAAAACAAGTTTCAAAACAGGGAATC 60.414 37.037 8.23 0.00 41.30 2.52
1540 2755 6.374053 CCAAAACAAGTTTCAAAACAGGGAAT 59.626 34.615 8.23 0.00 41.30 3.01
1541 2756 5.703130 CCAAAACAAGTTTCAAAACAGGGAA 59.297 36.000 8.23 0.00 41.30 3.97
1542 2757 5.241662 CCAAAACAAGTTTCAAAACAGGGA 58.758 37.500 8.23 0.00 41.30 4.20
1543 2758 4.394610 CCCAAAACAAGTTTCAAAACAGGG 59.605 41.667 8.23 0.00 41.30 4.45
1544 2759 4.394610 CCCCAAAACAAGTTTCAAAACAGG 59.605 41.667 8.23 2.49 41.30 4.00
1545 2760 4.142708 GCCCCAAAACAAGTTTCAAAACAG 60.143 41.667 8.23 3.15 41.30 3.16
1546 2761 3.753797 GCCCCAAAACAAGTTTCAAAACA 59.246 39.130 8.23 0.00 41.30 2.83
1547 2762 3.753797 TGCCCCAAAACAAGTTTCAAAAC 59.246 39.130 0.00 0.00 39.17 2.43
1548 2763 4.021102 TGCCCCAAAACAAGTTTCAAAA 57.979 36.364 0.00 0.00 31.45 2.44
1563 2778 2.890311 CAACAATACTGAACTTGCCCCA 59.110 45.455 0.00 0.00 0.00 4.96
1564 2779 3.153919 TCAACAATACTGAACTTGCCCC 58.846 45.455 0.00 0.00 0.00 5.80
1568 2783 7.904977 CCGACAATATCAACAATACTGAACTTG 59.095 37.037 0.00 0.00 0.00 3.16
1574 2789 8.818141 ATAGTCCGACAATATCAACAATACTG 57.182 34.615 0.40 0.00 0.00 2.74
1578 2793 9.078990 TCTAGATAGTCCGACAATATCAACAAT 57.921 33.333 0.40 0.00 0.00 2.71
1579 2794 8.459911 TCTAGATAGTCCGACAATATCAACAA 57.540 34.615 0.40 0.00 0.00 2.83
1580 2795 8.637196 ATCTAGATAGTCCGACAATATCAACA 57.363 34.615 2.53 0.00 0.00 3.33
1581 2796 8.731605 TGATCTAGATAGTCCGACAATATCAAC 58.268 37.037 4.89 0.00 0.00 3.18
1582 2797 8.863872 TGATCTAGATAGTCCGACAATATCAA 57.136 34.615 4.89 0.00 0.00 2.57
1583 2798 8.322091 TCTGATCTAGATAGTCCGACAATATCA 58.678 37.037 4.89 0.00 0.00 2.15
1584 2799 8.725405 TCTGATCTAGATAGTCCGACAATATC 57.275 38.462 4.89 0.93 0.00 1.63
1585 2800 9.337396 GATCTGATCTAGATAGTCCGACAATAT 57.663 37.037 4.89 0.00 46.12 1.28
1592 2807 5.414144 TGCAAGATCTGATCTAGATAGTCCG 59.586 44.000 19.82 3.07 46.12 4.79
1633 2848 6.435292 AACTGGTGGGGCTATTACTATTAG 57.565 41.667 0.00 0.00 0.00 1.73
1637 2852 7.250454 TGATATAACTGGTGGGGCTATTACTA 58.750 38.462 0.00 0.00 0.00 1.82
1701 2916 3.200165 AGGGCCCTAGTGTAAAAGATCAC 59.800 47.826 27.42 0.00 35.13 3.06
1703 2918 4.080526 TCAAGGGCCCTAGTGTAAAAGATC 60.081 45.833 28.96 0.00 0.00 2.75
1762 2977 6.608405 AGCCCATCACATATCTCATTTTTCAA 59.392 34.615 0.00 0.00 0.00 2.69
1767 2982 7.392673 GTCAATAGCCCATCACATATCTCATTT 59.607 37.037 0.00 0.00 0.00 2.32
1776 2991 4.795469 TGAATGTCAATAGCCCATCACAT 58.205 39.130 0.00 0.00 0.00 3.21
1777 2992 4.080413 TCTGAATGTCAATAGCCCATCACA 60.080 41.667 0.00 0.00 0.00 3.58
1846 3061 8.622157 GCATATGAGCATAGCATTATCAGAAAT 58.378 33.333 6.97 0.00 0.00 2.17
1895 3136 9.862371 GAGATAGTACAAAAGATCAGTTCAAGA 57.138 33.333 0.00 0.00 0.00 3.02
1965 3206 8.823818 CCTCCGTATCAAAATATAAGACGTTTT 58.176 33.333 0.00 0.00 0.00 2.43
1966 3207 7.440255 CCCTCCGTATCAAAATATAAGACGTTT 59.560 37.037 0.00 0.00 0.00 3.60
1967 3208 6.927381 CCCTCCGTATCAAAATATAAGACGTT 59.073 38.462 0.00 0.00 0.00 3.99
1968 3209 6.266103 TCCCTCCGTATCAAAATATAAGACGT 59.734 38.462 0.00 0.00 0.00 4.34
1969 3210 6.684686 TCCCTCCGTATCAAAATATAAGACG 58.315 40.000 0.00 0.00 0.00 4.18
1970 3211 7.668492 ACTCCCTCCGTATCAAAATATAAGAC 58.332 38.462 0.00 0.00 0.00 3.01
1972 3213 8.582437 TGTACTCCCTCCGTATCAAAATATAAG 58.418 37.037 0.00 0.00 0.00 1.73
1973 3214 8.481492 TGTACTCCCTCCGTATCAAAATATAA 57.519 34.615 0.00 0.00 0.00 0.98
1975 3216 6.989155 TGTACTCCCTCCGTATCAAAATAT 57.011 37.500 0.00 0.00 0.00 1.28
1977 3218 5.687166 TTGTACTCCCTCCGTATCAAAAT 57.313 39.130 0.00 0.00 0.00 1.82
1980 3221 4.773674 TCTTTTGTACTCCCTCCGTATCAA 59.226 41.667 0.00 0.00 0.00 2.57
1981 3222 4.159135 GTCTTTTGTACTCCCTCCGTATCA 59.841 45.833 0.00 0.00 0.00 2.15
1982 3223 4.401837 AGTCTTTTGTACTCCCTCCGTATC 59.598 45.833 0.00 0.00 0.00 2.24
1983 3224 4.159879 CAGTCTTTTGTACTCCCTCCGTAT 59.840 45.833 0.00 0.00 0.00 3.06
1985 3226 2.299297 CAGTCTTTTGTACTCCCTCCGT 59.701 50.000 0.00 0.00 0.00 4.69
1986 3227 2.299297 ACAGTCTTTTGTACTCCCTCCG 59.701 50.000 0.00 0.00 0.00 4.63
1987 3228 3.323979 TCACAGTCTTTTGTACTCCCTCC 59.676 47.826 0.00 0.00 0.00 4.30
1988 3229 4.602340 TCACAGTCTTTTGTACTCCCTC 57.398 45.455 0.00 0.00 0.00 4.30
1989 3230 5.123936 GTTTCACAGTCTTTTGTACTCCCT 58.876 41.667 0.00 0.00 0.00 4.20
1990 3231 4.879545 TGTTTCACAGTCTTTTGTACTCCC 59.120 41.667 0.00 0.00 0.00 4.30
1991 3232 5.353123 TGTGTTTCACAGTCTTTTGTACTCC 59.647 40.000 0.00 0.00 39.62 3.85
1992 3233 6.417191 TGTGTTTCACAGTCTTTTGTACTC 57.583 37.500 0.00 0.00 39.62 2.59
2027 3353 1.796459 GTTCGACGCAAGAGCCTTTTA 59.204 47.619 0.00 0.00 43.62 1.52
2041 3528 4.254402 AGACCAAAGAAGTAGGTTCGAC 57.746 45.455 0.00 0.00 40.49 4.20
2066 3553 2.904434 TGGGAGGACCTAAAGAACAGAC 59.096 50.000 0.00 0.00 41.11 3.51
2067 3554 3.269592 TGGGAGGACCTAAAGAACAGA 57.730 47.619 0.00 0.00 41.11 3.41
2068 3555 4.072839 GTTTGGGAGGACCTAAAGAACAG 58.927 47.826 0.00 0.00 44.90 3.16
2128 3628 4.486125 AACAGTTTGCCAAAAGAACCAT 57.514 36.364 0.00 0.00 0.00 3.55
2287 3787 1.956869 TGATGTGGGAGACTGATGGT 58.043 50.000 0.00 0.00 0.00 3.55
2333 3836 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
2398 3912 3.866066 GCATCAGCCAAACAGAGTACAGA 60.866 47.826 0.00 0.00 33.58 3.41
2421 3935 9.874205 CTTAAAAGGAAAGGATATTCATTGCAA 57.126 29.630 0.00 0.00 33.96 4.08
2444 3963 8.183830 CAAGCAGATTGTTTGTGTTTTTCTTA 57.816 30.769 0.00 0.00 34.49 2.10
2466 3988 7.338710 TGGAAGGAGGATATTAGAAACACAAG 58.661 38.462 0.00 0.00 0.00 3.16
2469 3991 7.610305 TGTTTGGAAGGAGGATATTAGAAACAC 59.390 37.037 0.00 0.00 0.00 3.32
2486 4008 6.101650 AGCTCCCTAAAAATTGTTTGGAAG 57.898 37.500 10.12 0.69 0.00 3.46
2516 4038 3.675228 GCACTGGGATTCTGAAAATGCAG 60.675 47.826 0.00 0.00 37.24 4.41
2528 4050 5.531287 GTCTTATTATTTCGGCACTGGGATT 59.469 40.000 0.00 0.00 0.00 3.01
2552 4074 1.475280 CACATTGGGGATTGCTCTGTG 59.525 52.381 0.00 0.00 0.00 3.66
2553 4075 1.076024 ACACATTGGGGATTGCTCTGT 59.924 47.619 0.00 0.00 0.00 3.41
2558 4080 0.458370 GCGAACACATTGGGGATTGC 60.458 55.000 0.00 0.00 0.00 3.56
2573 4095 0.443869 GCTTGCTCGAGATTTGCGAA 59.556 50.000 18.75 0.00 37.32 4.70
2597 4119 3.433031 CCCTGTTGGTGACTCTGTTTGTA 60.433 47.826 0.00 0.00 0.00 2.41
2647 4169 2.905415 AATGGATGTCCTGAGGCAAA 57.095 45.000 0.00 0.00 36.82 3.68
2740 4262 2.927685 ACAGAACCCTAGTCCTACTCCT 59.072 50.000 0.00 0.00 0.00 3.69
2884 4406 1.504912 ATCCACCCTCATCTCCTGTG 58.495 55.000 0.00 0.00 0.00 3.66
2885 4407 3.051803 TCTTATCCACCCTCATCTCCTGT 60.052 47.826 0.00 0.00 0.00 4.00
2905 4427 9.030452 GGGATCTCATTCACTAACACTATATCT 57.970 37.037 0.00 0.00 0.00 1.98
2908 4430 7.306013 AGGGGATCTCATTCACTAACACTATA 58.694 38.462 0.00 0.00 0.00 1.31
2932 6405 3.865011 TGAAGAGAGCTTGCAGAGTAG 57.135 47.619 0.00 0.00 33.61 2.57
2981 6458 8.943925 CACGGAGAATAGCATTAAAAATTTACG 58.056 33.333 0.00 0.00 0.00 3.18
2990 6467 7.120579 ACAAAATGACACGGAGAATAGCATTAA 59.879 33.333 0.00 0.00 0.00 1.40
3033 6511 4.318332 CCTTTATTAGGCATCTCATCGCA 58.682 43.478 0.00 0.00 37.17 5.10
3047 6525 7.103641 CAGGAAAGTACTCACTGCCTTTATTA 58.896 38.462 0.00 0.00 37.96 0.98
3086 6564 5.463724 CAGTTTCAAGGTAGATAGCGAATCC 59.536 44.000 0.00 0.00 34.90 3.01
3094 6572 5.248477 AGCAGGTTCAGTTTCAAGGTAGATA 59.752 40.000 0.00 0.00 0.00 1.98
3103 6581 3.892284 TGGTTAAGCAGGTTCAGTTTCA 58.108 40.909 2.54 0.00 0.00 2.69
3124 6602 5.171339 ACAGCAGAGTGAATTAAGGTCAT 57.829 39.130 0.00 0.00 0.00 3.06
3126 6604 5.241662 AGAACAGCAGAGTGAATTAAGGTC 58.758 41.667 0.00 0.00 0.00 3.85
3132 6610 2.555757 GGCAAGAACAGCAGAGTGAATT 59.444 45.455 0.00 0.00 0.00 2.17
3157 6635 3.106827 TCACTCCATATGAAGGCACTGA 58.893 45.455 3.65 0.00 40.86 3.41
3166 6644 4.459337 CGCTAGGTACATCACTCCATATGA 59.541 45.833 3.65 0.00 0.00 2.15
3168 6646 3.764434 CCGCTAGGTACATCACTCCATAT 59.236 47.826 0.00 0.00 0.00 1.78
3183 6668 5.873179 TGTAATTCTTTTTCACCGCTAGG 57.127 39.130 0.00 0.00 45.13 3.02
3186 6671 4.142687 CCGATGTAATTCTTTTTCACCGCT 60.143 41.667 0.00 0.00 0.00 5.52
3187 6672 4.095610 CCGATGTAATTCTTTTTCACCGC 58.904 43.478 0.00 0.00 0.00 5.68
3191 6676 5.007034 TGGAGCCGATGTAATTCTTTTTCA 58.993 37.500 0.00 0.00 0.00 2.69
3201 6686 0.108186 CACTGCTGGAGCCGATGTAA 60.108 55.000 0.00 0.00 41.18 2.41
3309 6794 9.507329 TGAAGCTGTGTTTATTTAGAGAAGAAT 57.493 29.630 0.00 0.00 0.00 2.40
3333 6818 2.143122 CAGTTTTTCTGCTAGCCGTGA 58.857 47.619 13.29 5.16 37.36 4.35
3334 6819 2.143122 TCAGTTTTTCTGCTAGCCGTG 58.857 47.619 13.29 2.57 43.32 4.94
3335 6820 2.417719 CTCAGTTTTTCTGCTAGCCGT 58.582 47.619 13.29 0.00 43.32 5.68
3337 6822 2.154462 TGCTCAGTTTTTCTGCTAGCC 58.846 47.619 13.29 0.00 40.84 3.93
3338 6823 3.365767 CCTTGCTCAGTTTTTCTGCTAGC 60.366 47.826 8.10 8.10 43.32 3.42
3339 6824 3.365767 GCCTTGCTCAGTTTTTCTGCTAG 60.366 47.826 0.00 0.00 43.32 3.42
3341 6826 1.339291 GCCTTGCTCAGTTTTTCTGCT 59.661 47.619 0.00 0.00 43.32 4.24
3342 6827 1.603931 GGCCTTGCTCAGTTTTTCTGC 60.604 52.381 0.00 0.00 43.32 4.26
3344 6829 0.954452 CGGCCTTGCTCAGTTTTTCT 59.046 50.000 0.00 0.00 0.00 2.52
3345 6830 0.664466 GCGGCCTTGCTCAGTTTTTC 60.664 55.000 0.00 0.00 0.00 2.29
3350 6842 2.670934 CAAGCGGCCTTGCTCAGT 60.671 61.111 5.54 0.00 46.60 3.41
3352 6844 2.359107 CTCAAGCGGCCTTGCTCA 60.359 61.111 5.54 0.00 46.60 4.26
3355 6847 3.435186 GGACTCAAGCGGCCTTGC 61.435 66.667 0.00 0.00 46.38 4.01
3398 6890 1.067212 GTCAGACACTCGCCGGATTAT 59.933 52.381 5.05 0.00 0.00 1.28
3401 6893 1.323271 ATGTCAGACACTCGCCGGAT 61.323 55.000 5.05 0.00 0.00 4.18
3408 6900 3.141398 TGGCAAAGAATGTCAGACACTC 58.859 45.455 5.05 4.31 39.16 3.51
3417 6909 4.339872 TGCAAGAAATGGCAAAGAATGT 57.660 36.364 0.00 0.00 37.03 2.71
3422 6914 4.624024 CACTACATGCAAGAAATGGCAAAG 59.376 41.667 0.00 0.00 44.20 2.77
3433 6925 5.122711 TGACATGATGAACACTACATGCAAG 59.877 40.000 0.00 0.00 42.28 4.01
3437 6929 6.104665 AGTCTGACATGATGAACACTACATG 58.895 40.000 10.88 0.00 43.56 3.21
3448 6940 6.629128 AGTTTGTCTCTAGTCTGACATGATG 58.371 40.000 10.88 0.00 41.93 3.07
3458 6950 6.362820 CCTAACGTCAAAGTTTGTCTCTAGTC 59.637 42.308 15.08 0.00 35.70 2.59
3621 7119 4.706476 TGGACCCTTTATTTTGAGCTCATG 59.294 41.667 19.04 2.34 0.00 3.07
3641 7140 8.262227 TCAGACTTCAAGTAAACTAAAGTTGGA 58.738 33.333 10.45 8.96 38.44 3.53
3819 8110 4.421058 GGGCGAACAAAAAGGAATGATAC 58.579 43.478 0.00 0.00 0.00 2.24
3859 8164 2.809119 TGAAAACTCGGCGAATTGCTAA 59.191 40.909 12.13 0.00 45.43 3.09
4088 8407 1.833630 CTCATGTAGAGGGCCTGAACA 59.166 52.381 12.95 15.81 40.84 3.18
4121 8451 4.792521 TCCTACTCTTCTTCTTCTGCAC 57.207 45.455 0.00 0.00 0.00 4.57
4301 8637 4.763073 TCTCAGTCAGGCAGAACAATATG 58.237 43.478 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.