Multiple sequence alignment - TraesCS5B01G297000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G297000 chr5B 100.000 4885 0 0 1 4885 479829574 479834458 0.000000e+00 9022.0
1 TraesCS5B01G297000 chr5D 95.441 2347 78 11 1821 4148 399950821 399953157 0.000000e+00 3714.0
2 TraesCS5B01G297000 chr5D 88.869 1141 46 42 778 1853 399949687 399950811 0.000000e+00 1328.0
3 TraesCS5B01G297000 chr5D 89.508 610 51 5 4289 4885 399953773 399954382 0.000000e+00 760.0
4 TraesCS5B01G297000 chr5D 88.525 366 31 7 2 363 399949298 399949656 2.700000e-117 433.0
5 TraesCS5B01G297000 chr5A 92.770 1549 92 9 2505 4043 505508837 505510375 0.000000e+00 2222.0
6 TraesCS5B01G297000 chr5A 86.703 1113 67 35 797 1853 505506949 505508036 0.000000e+00 1160.0
7 TraesCS5B01G297000 chr5A 93.228 694 39 5 1821 2509 505508046 505508736 0.000000e+00 1014.0
8 TraesCS5B01G297000 chr5A 95.989 374 14 1 2 374 505506511 505506884 1.500000e-169 606.0
9 TraesCS5B01G297000 chr5A 85.817 557 49 16 4045 4580 505510540 505511087 9.180000e-157 564.0
10 TraesCS5B01G297000 chr5A 89.286 252 19 5 4634 4885 505511101 505511344 4.750000e-80 309.0
11 TraesCS5B01G297000 chr5A 82.927 123 17 4 580 699 607690344 607690465 1.860000e-19 108.0
12 TraesCS5B01G297000 chr7D 85.799 338 42 6 4144 4476 52378194 52378530 2.160000e-93 353.0
13 TraesCS5B01G297000 chr3B 77.941 204 31 12 473 671 394944259 394944065 1.110000e-21 115.0
14 TraesCS5B01G297000 chr2B 83.193 119 14 6 626 742 84974889 84974775 2.410000e-18 104.0
15 TraesCS5B01G297000 chr2B 75.536 233 35 16 483 710 754992845 754993060 1.450000e-15 95.3
16 TraesCS5B01G297000 chr2D 80.952 105 18 1 594 698 180882379 180882277 1.130000e-11 82.4
17 TraesCS5B01G297000 chr1D 91.525 59 5 0 595 653 16506531 16506589 1.130000e-11 82.4
18 TraesCS5B01G297000 chr2A 80.583 103 16 3 596 698 195314131 195314033 5.240000e-10 76.8
19 TraesCS5B01G297000 chr7A 97.059 34 1 0 616 649 164810319 164810352 1.900000e-04 58.4
20 TraesCS5B01G297000 chr6B 92.105 38 3 0 626 663 682565726 682565689 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G297000 chr5B 479829574 479834458 4884 False 9022.000000 9022 100.000000 1 4885 1 chr5B.!!$F1 4884
1 TraesCS5B01G297000 chr5D 399949298 399954382 5084 False 1558.750000 3714 90.585750 2 4885 4 chr5D.!!$F1 4883
2 TraesCS5B01G297000 chr5A 505506511 505511344 4833 False 979.166667 2222 90.632167 2 4885 6 chr5A.!!$F2 4883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 333 0.177836 TATCCGTGCACCTGTGATGG 59.822 55.0 12.15 4.70 0.00 3.51 F
414 427 0.250727 TCTTTTCCCAAGCTCACGGG 60.251 55.0 9.14 9.14 44.60 5.28 F
421 434 0.321564 CCAAGCTCACGGGATGAACA 60.322 55.0 0.00 0.00 36.69 3.18 F
1436 1550 1.079503 GATGGTCGGAGCTGTTGTTC 58.920 55.0 8.82 0.00 0.00 3.18 F
2332 2501 0.250901 AAGAGCCGTGGCACTTTGAT 60.251 50.0 16.42 2.41 46.71 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1365 0.249489 GTCCCCGAACGGATCATCTG 60.249 60.0 15.07 0.0 37.50 2.90 R
1382 1495 0.318614 GCATCAAACCCAACACACCG 60.319 55.0 0.00 0.0 0.00 4.94 R
1747 1866 0.456221 ACGCTGCGACATTAGCTAGT 59.544 50.0 30.47 0.0 37.78 2.57 R
3419 3697 0.534203 TCGGCTTTTCCTTCGCTTGT 60.534 50.0 0.00 0.0 0.00 3.16 R
4108 4568 0.031857 TGTGTGGCCTTTTTGCATCG 59.968 50.0 3.32 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 93 3.495193 CCATTGTGATTTTGAGCTGACG 58.505 45.455 0.00 0.00 0.00 4.35
111 114 6.204688 TGACGCCCATTGATTTGTATAATCTC 59.795 38.462 0.00 0.00 0.00 2.75
135 138 3.069586 TGAACTCGAAGTTGGTGTGAGAT 59.930 43.478 5.20 0.00 38.80 2.75
141 144 2.847327 AGTTGGTGTGAGATGTGAGG 57.153 50.000 0.00 0.00 0.00 3.86
208 218 7.681939 TCAAAATTATGTGAGACTTGGTACC 57.318 36.000 4.43 4.43 0.00 3.34
323 333 0.177836 TATCCGTGCACCTGTGATGG 59.822 55.000 12.15 4.70 0.00 3.51
364 377 5.988287 TGGTGAGATGATAGTGCAATACAA 58.012 37.500 0.00 0.00 0.00 2.41
365 378 5.817296 TGGTGAGATGATAGTGCAATACAAC 59.183 40.000 0.00 0.00 0.00 3.32
366 379 5.050769 GGTGAGATGATAGTGCAATACAACG 60.051 44.000 0.00 0.00 0.00 4.10
367 380 5.520288 GTGAGATGATAGTGCAATACAACGT 59.480 40.000 0.00 0.00 0.00 3.99
368 381 6.695713 GTGAGATGATAGTGCAATACAACGTA 59.304 38.462 0.00 0.00 0.00 3.57
391 404 9.298113 CGTAAGTTGTACGAATTTAAGTGAAAG 57.702 33.333 0.34 0.00 42.94 2.62
396 409 9.789029 GTTGTACGAATTTAAGTGAAAGTACTC 57.211 33.333 0.00 0.00 35.56 2.59
397 410 9.754382 TTGTACGAATTTAAGTGAAAGTACTCT 57.246 29.630 0.00 0.00 35.56 3.24
398 411 9.754382 TGTACGAATTTAAGTGAAAGTACTCTT 57.246 29.630 0.00 0.00 35.56 2.85
402 415 9.595357 CGAATTTAAGTGAAAGTACTCTTTTCC 57.405 33.333 0.00 0.00 42.99 3.13
403 416 9.894783 GAATTTAAGTGAAAGTACTCTTTTCCC 57.105 33.333 0.00 0.00 42.99 3.97
404 417 8.990163 ATTTAAGTGAAAGTACTCTTTTCCCA 57.010 30.769 0.00 0.00 42.99 4.37
405 418 8.810990 TTTAAGTGAAAGTACTCTTTTCCCAA 57.189 30.769 0.00 0.00 42.99 4.12
406 419 6.944234 AAGTGAAAGTACTCTTTTCCCAAG 57.056 37.500 0.00 0.00 42.99 3.61
407 420 4.822350 AGTGAAAGTACTCTTTTCCCAAGC 59.178 41.667 0.00 0.00 42.99 4.01
408 421 4.822350 GTGAAAGTACTCTTTTCCCAAGCT 59.178 41.667 0.00 0.00 42.99 3.74
409 422 5.049336 GTGAAAGTACTCTTTTCCCAAGCTC 60.049 44.000 0.00 0.00 42.99 4.09
410 423 4.706842 AAGTACTCTTTTCCCAAGCTCA 57.293 40.909 0.00 0.00 0.00 4.26
411 424 4.009370 AGTACTCTTTTCCCAAGCTCAC 57.991 45.455 0.00 0.00 0.00 3.51
412 425 1.884235 ACTCTTTTCCCAAGCTCACG 58.116 50.000 0.00 0.00 0.00 4.35
413 426 1.160137 CTCTTTTCCCAAGCTCACGG 58.840 55.000 0.00 0.00 0.00 4.94
414 427 0.250727 TCTTTTCCCAAGCTCACGGG 60.251 55.000 9.14 9.14 44.60 5.28
417 430 2.989639 TCCCAAGCTCACGGGATG 59.010 61.111 13.23 0.00 46.93 3.51
418 431 1.612146 TCCCAAGCTCACGGGATGA 60.612 57.895 13.23 0.00 46.93 2.92
419 432 1.198094 TCCCAAGCTCACGGGATGAA 61.198 55.000 13.23 0.00 46.93 2.57
420 433 1.026718 CCCAAGCTCACGGGATGAAC 61.027 60.000 9.73 0.00 46.34 3.18
421 434 0.321564 CCAAGCTCACGGGATGAACA 60.322 55.000 0.00 0.00 36.69 3.18
422 435 1.522668 CAAGCTCACGGGATGAACAA 58.477 50.000 0.00 0.00 36.69 2.83
423 436 2.086869 CAAGCTCACGGGATGAACAAT 58.913 47.619 0.00 0.00 36.69 2.71
424 437 3.270027 CAAGCTCACGGGATGAACAATA 58.730 45.455 0.00 0.00 36.69 1.90
425 438 3.627395 AGCTCACGGGATGAACAATAA 57.373 42.857 0.00 0.00 36.69 1.40
426 439 3.950397 AGCTCACGGGATGAACAATAAA 58.050 40.909 0.00 0.00 36.69 1.40
427 440 4.331968 AGCTCACGGGATGAACAATAAAA 58.668 39.130 0.00 0.00 36.69 1.52
428 441 4.949856 AGCTCACGGGATGAACAATAAAAT 59.050 37.500 0.00 0.00 36.69 1.82
429 442 5.066505 AGCTCACGGGATGAACAATAAAATC 59.933 40.000 0.00 0.00 36.69 2.17
430 443 5.163663 GCTCACGGGATGAACAATAAAATCA 60.164 40.000 0.00 0.00 36.69 2.57
431 444 6.435430 TCACGGGATGAACAATAAAATCAG 57.565 37.500 0.00 0.00 33.02 2.90
432 445 5.356751 TCACGGGATGAACAATAAAATCAGG 59.643 40.000 0.00 0.00 33.02 3.86
433 446 5.356751 CACGGGATGAACAATAAAATCAGGA 59.643 40.000 0.00 0.00 0.00 3.86
434 447 5.949354 ACGGGATGAACAATAAAATCAGGAA 59.051 36.000 0.00 0.00 0.00 3.36
435 448 6.435904 ACGGGATGAACAATAAAATCAGGAAA 59.564 34.615 0.00 0.00 0.00 3.13
436 449 7.039363 ACGGGATGAACAATAAAATCAGGAAAA 60.039 33.333 0.00 0.00 0.00 2.29
437 450 7.816995 CGGGATGAACAATAAAATCAGGAAAAA 59.183 33.333 0.00 0.00 0.00 1.94
506 519 7.692908 TTTTGAGTGCTTGTAAAATTACAGC 57.307 32.000 15.00 15.00 43.77 4.40
507 520 5.029650 TGAGTGCTTGTAAAATTACAGCG 57.970 39.130 15.97 9.82 43.77 5.18
508 521 4.513692 TGAGTGCTTGTAAAATTACAGCGT 59.486 37.500 15.97 10.08 43.77 5.07
509 522 5.008217 TGAGTGCTTGTAAAATTACAGCGTT 59.992 36.000 15.97 10.42 43.77 4.84
510 523 6.203145 TGAGTGCTTGTAAAATTACAGCGTTA 59.797 34.615 15.97 6.70 43.77 3.18
511 524 6.961576 AGTGCTTGTAAAATTACAGCGTTAA 58.038 32.000 15.97 0.71 43.77 2.01
512 525 7.419204 AGTGCTTGTAAAATTACAGCGTTAAA 58.581 30.769 15.97 0.20 43.77 1.52
513 526 8.079809 AGTGCTTGTAAAATTACAGCGTTAAAT 58.920 29.630 15.97 3.64 43.77 1.40
514 527 8.153411 GTGCTTGTAAAATTACAGCGTTAAATG 58.847 33.333 15.97 0.00 43.77 2.32
515 528 8.076781 TGCTTGTAAAATTACAGCGTTAAATGA 58.923 29.630 15.97 0.00 43.77 2.57
516 529 8.363029 GCTTGTAAAATTACAGCGTTAAATGAC 58.637 33.333 6.16 0.00 43.77 3.06
517 530 9.388346 CTTGTAAAATTACAGCGTTAAATGACA 57.612 29.630 6.16 0.00 43.77 3.58
518 531 9.900710 TTGTAAAATTACAGCGTTAAATGACAT 57.099 25.926 6.16 0.00 43.77 3.06
519 532 9.900710 TGTAAAATTACAGCGTTAAATGACATT 57.099 25.926 1.96 0.00 38.64 2.71
522 535 8.810652 AAATTACAGCGTTAAATGACATTTGT 57.189 26.923 21.21 13.28 33.82 2.83
523 536 9.900710 AAATTACAGCGTTAAATGACATTTGTA 57.099 25.926 21.21 12.39 33.82 2.41
524 537 9.554724 AATTACAGCGTTAAATGACATTTGTAG 57.445 29.630 21.21 13.16 33.82 2.74
525 538 6.795098 ACAGCGTTAAATGACATTTGTAGA 57.205 33.333 21.21 0.68 33.82 2.59
526 539 7.197071 ACAGCGTTAAATGACATTTGTAGAA 57.803 32.000 21.21 6.69 33.82 2.10
527 540 7.298122 ACAGCGTTAAATGACATTTGTAGAAG 58.702 34.615 21.21 10.77 33.82 2.85
528 541 7.041372 ACAGCGTTAAATGACATTTGTAGAAGT 60.041 33.333 21.21 11.30 33.82 3.01
529 542 7.478667 CAGCGTTAAATGACATTTGTAGAAGTC 59.521 37.037 21.21 4.72 33.82 3.01
530 543 6.461698 GCGTTAAATGACATTTGTAGAAGTCG 59.538 38.462 21.21 13.91 33.83 4.18
531 544 7.507304 CGTTAAATGACATTTGTAGAAGTCGT 58.493 34.615 21.21 0.00 33.83 4.34
532 545 7.474332 CGTTAAATGACATTTGTAGAAGTCGTG 59.526 37.037 21.21 0.00 33.83 4.35
533 546 5.862924 AATGACATTTGTAGAAGTCGTGG 57.137 39.130 0.00 0.00 33.83 4.94
534 547 4.594123 TGACATTTGTAGAAGTCGTGGA 57.406 40.909 0.00 0.00 33.83 4.02
535 548 4.951254 TGACATTTGTAGAAGTCGTGGAA 58.049 39.130 0.00 0.00 33.83 3.53
536 549 5.361427 TGACATTTGTAGAAGTCGTGGAAA 58.639 37.500 0.00 0.00 33.83 3.13
537 550 5.818336 TGACATTTGTAGAAGTCGTGGAAAA 59.182 36.000 0.00 0.00 33.83 2.29
538 551 6.316640 TGACATTTGTAGAAGTCGTGGAAAAA 59.683 34.615 0.00 0.00 33.83 1.94
564 577 7.647907 AGACAAAATCATCACTCAAAAATGC 57.352 32.000 0.00 0.00 0.00 3.56
565 578 7.439381 AGACAAAATCATCACTCAAAAATGCT 58.561 30.769 0.00 0.00 0.00 3.79
566 579 7.929785 AGACAAAATCATCACTCAAAAATGCTT 59.070 29.630 0.00 0.00 0.00 3.91
567 580 8.441312 ACAAAATCATCACTCAAAAATGCTTT 57.559 26.923 0.00 0.00 0.00 3.51
568 581 8.895737 ACAAAATCATCACTCAAAAATGCTTTT 58.104 25.926 0.00 0.00 35.02 2.27
585 598 7.775397 ATGCTTTTGGAAATGATATTTTCGG 57.225 32.000 0.00 0.00 36.63 4.30
586 599 6.696411 TGCTTTTGGAAATGATATTTTCGGT 58.304 32.000 0.00 0.00 36.63 4.69
587 600 6.589523 TGCTTTTGGAAATGATATTTTCGGTG 59.410 34.615 0.00 0.00 36.63 4.94
588 601 6.455513 GCTTTTGGAAATGATATTTTCGGTGC 60.456 38.462 0.00 0.00 36.63 5.01
589 602 5.651387 TTGGAAATGATATTTTCGGTGCA 57.349 34.783 0.00 0.00 36.63 4.57
590 603 5.850557 TGGAAATGATATTTTCGGTGCAT 57.149 34.783 0.00 0.00 36.63 3.96
591 604 5.830912 TGGAAATGATATTTTCGGTGCATC 58.169 37.500 0.00 0.00 36.63 3.91
592 605 5.359292 TGGAAATGATATTTTCGGTGCATCA 59.641 36.000 0.00 0.00 36.63 3.07
593 606 6.040729 TGGAAATGATATTTTCGGTGCATCAT 59.959 34.615 0.00 0.00 37.82 2.45
594 607 6.925165 GGAAATGATATTTTCGGTGCATCATT 59.075 34.615 0.00 0.00 44.26 2.57
596 609 8.721019 AAATGATATTTTCGGTGCATCATTTT 57.279 26.923 11.45 0.63 46.45 1.82
597 610 8.721019 AATGATATTTTCGGTGCATCATTTTT 57.279 26.923 0.00 0.00 41.31 1.94
621 634 5.518848 TTTTGCCATGGCTTCTACATATG 57.481 39.130 35.53 0.00 42.51 1.78
622 635 3.862877 TGCCATGGCTTCTACATATGT 57.137 42.857 35.53 13.93 42.51 2.29
623 636 3.743521 TGCCATGGCTTCTACATATGTC 58.256 45.455 35.53 3.76 42.51 3.06
624 637 3.136260 TGCCATGGCTTCTACATATGTCA 59.864 43.478 35.53 8.95 42.51 3.58
625 638 4.202493 TGCCATGGCTTCTACATATGTCAT 60.202 41.667 35.53 5.65 42.51 3.06
626 639 4.763793 GCCATGGCTTCTACATATGTCATT 59.236 41.667 29.98 0.00 38.26 2.57
627 640 5.242393 GCCATGGCTTCTACATATGTCATTT 59.758 40.000 29.98 0.00 38.26 2.32
628 641 6.569226 GCCATGGCTTCTACATATGTCATTTC 60.569 42.308 29.98 0.42 38.26 2.17
629 642 6.487668 CCATGGCTTCTACATATGTCATTTCA 59.512 38.462 12.68 5.97 0.00 2.69
630 643 7.176165 CCATGGCTTCTACATATGTCATTTCAT 59.824 37.037 12.68 7.94 0.00 2.57
631 644 7.500720 TGGCTTCTACATATGTCATTTCATG 57.499 36.000 12.68 0.00 0.00 3.07
632 645 7.281841 TGGCTTCTACATATGTCATTTCATGA 58.718 34.615 12.68 0.00 36.84 3.07
633 646 7.940688 TGGCTTCTACATATGTCATTTCATGAT 59.059 33.333 12.68 0.00 42.04 2.45
634 647 8.235226 GGCTTCTACATATGTCATTTCATGATG 58.765 37.037 12.68 0.00 42.04 3.07
635 648 8.996271 GCTTCTACATATGTCATTTCATGATGA 58.004 33.333 12.68 0.00 42.04 2.92
647 660 5.910637 TTTCATGATGAAACTTTGCAAGC 57.089 34.783 16.04 0.00 41.02 4.01
648 661 4.587584 TCATGATGAAACTTTGCAAGCA 57.412 36.364 0.00 0.00 0.00 3.91
649 662 5.142061 TCATGATGAAACTTTGCAAGCAT 57.858 34.783 0.00 0.10 0.00 3.79
650 663 5.543714 TCATGATGAAACTTTGCAAGCATT 58.456 33.333 0.00 0.00 0.00 3.56
651 664 6.073494 TTCATGATGAAACTTTGCAAGCATTG 60.073 34.615 5.21 0.00 40.56 2.82
652 665 8.165185 TTCATGATGAAACTTTGCAAGCATTGA 61.165 33.333 5.21 0.23 40.23 2.57
674 687 5.850557 ACACCATTTGTCAATCTTTGTCA 57.149 34.783 0.00 0.00 29.79 3.58
675 688 5.591099 ACACCATTTGTCAATCTTTGTCAC 58.409 37.500 0.00 0.00 29.79 3.67
676 689 5.126869 ACACCATTTGTCAATCTTTGTCACA 59.873 36.000 0.00 0.00 29.79 3.58
677 690 6.041511 CACCATTTGTCAATCTTTGTCACAA 58.958 36.000 0.00 0.00 0.00 3.33
678 691 6.019640 CACCATTTGTCAATCTTTGTCACAAC 60.020 38.462 0.00 0.00 0.00 3.32
679 692 6.041511 CCATTTGTCAATCTTTGTCACAACA 58.958 36.000 0.00 0.00 0.00 3.33
680 693 6.534436 CCATTTGTCAATCTTTGTCACAACAA 59.466 34.615 0.00 0.00 43.58 2.83
743 756 8.635765 TTTTGATTTTACTATTCACCAGAGCT 57.364 30.769 0.00 0.00 0.00 4.09
744 757 8.635765 TTTGATTTTACTATTCACCAGAGCTT 57.364 30.769 0.00 0.00 0.00 3.74
745 758 7.615582 TGATTTTACTATTCACCAGAGCTTG 57.384 36.000 0.00 0.00 0.00 4.01
746 759 7.168219 TGATTTTACTATTCACCAGAGCTTGT 58.832 34.615 0.00 0.00 0.00 3.16
747 760 8.318412 TGATTTTACTATTCACCAGAGCTTGTA 58.682 33.333 0.00 0.00 0.00 2.41
748 761 8.723942 ATTTTACTATTCACCAGAGCTTGTAG 57.276 34.615 0.00 0.00 0.00 2.74
749 762 6.852420 TTACTATTCACCAGAGCTTGTAGT 57.148 37.500 0.00 0.00 0.00 2.73
750 763 7.949690 TTACTATTCACCAGAGCTTGTAGTA 57.050 36.000 0.00 0.00 0.00 1.82
751 764 8.534954 TTACTATTCACCAGAGCTTGTAGTAT 57.465 34.615 0.00 0.00 0.00 2.12
752 765 6.810911 ACTATTCACCAGAGCTTGTAGTATG 58.189 40.000 0.00 0.00 0.00 2.39
753 766 4.471904 TTCACCAGAGCTTGTAGTATGG 57.528 45.455 0.00 0.00 0.00 2.74
754 767 2.168521 TCACCAGAGCTTGTAGTATGGC 59.831 50.000 0.00 0.00 0.00 4.40
755 768 2.093500 CACCAGAGCTTGTAGTATGGCA 60.093 50.000 0.00 0.00 0.00 4.92
756 769 2.571653 ACCAGAGCTTGTAGTATGGCAA 59.428 45.455 0.00 0.00 0.00 4.52
757 770 3.201290 CCAGAGCTTGTAGTATGGCAAG 58.799 50.000 0.00 0.00 43.42 4.01
758 771 3.118629 CCAGAGCTTGTAGTATGGCAAGA 60.119 47.826 8.27 0.00 43.29 3.02
759 772 4.507710 CAGAGCTTGTAGTATGGCAAGAA 58.492 43.478 8.27 0.00 43.29 2.52
760 773 4.569966 CAGAGCTTGTAGTATGGCAAGAAG 59.430 45.833 8.27 0.00 43.29 2.85
761 774 4.467795 AGAGCTTGTAGTATGGCAAGAAGA 59.532 41.667 8.27 0.00 43.29 2.87
762 775 5.046304 AGAGCTTGTAGTATGGCAAGAAGAA 60.046 40.000 8.27 0.00 43.29 2.52
763 776 4.938226 AGCTTGTAGTATGGCAAGAAGAAC 59.062 41.667 8.27 0.00 43.29 3.01
764 777 4.695455 GCTTGTAGTATGGCAAGAAGAACA 59.305 41.667 8.27 0.00 43.29 3.18
765 778 5.355350 GCTTGTAGTATGGCAAGAAGAACAT 59.645 40.000 8.27 0.00 43.29 2.71
766 779 6.457528 GCTTGTAGTATGGCAAGAAGAACATC 60.458 42.308 8.27 0.00 43.29 3.06
767 780 6.299805 TGTAGTATGGCAAGAAGAACATCT 57.700 37.500 0.00 0.00 0.00 2.90
768 781 6.341316 TGTAGTATGGCAAGAAGAACATCTC 58.659 40.000 0.00 0.00 0.00 2.75
769 782 5.690464 AGTATGGCAAGAAGAACATCTCT 57.310 39.130 0.00 0.00 35.13 3.10
770 783 6.798427 AGTATGGCAAGAAGAACATCTCTA 57.202 37.500 0.00 0.00 32.46 2.43
771 784 7.372260 AGTATGGCAAGAAGAACATCTCTAT 57.628 36.000 0.00 0.00 32.46 1.98
772 785 7.215789 AGTATGGCAAGAAGAACATCTCTATG 58.784 38.462 0.00 0.00 39.17 2.23
774 787 6.544928 TGGCAAGAAGAACATCTCTATGTA 57.455 37.500 0.00 0.00 45.79 2.29
775 788 6.341316 TGGCAAGAAGAACATCTCTATGTAC 58.659 40.000 0.00 0.00 45.79 2.90
776 789 6.070824 TGGCAAGAAGAACATCTCTATGTACA 60.071 38.462 0.00 0.00 45.79 2.90
868 918 2.490217 CTACACCGACCGAGCCAG 59.510 66.667 0.00 0.00 0.00 4.85
898 963 2.194326 GCCCATCTCTTCCCCTGC 59.806 66.667 0.00 0.00 0.00 4.85
900 965 2.761465 CCCATCTCTTCCCCTGCCC 61.761 68.421 0.00 0.00 0.00 5.36
901 966 2.002977 CCATCTCTTCCCCTGCCCA 61.003 63.158 0.00 0.00 0.00 5.36
946 1018 2.136878 CCCTCCATCTCTCCCACCG 61.137 68.421 0.00 0.00 0.00 4.94
947 1019 2.136878 CCTCCATCTCTCCCACCGG 61.137 68.421 0.00 0.00 0.00 5.28
948 1020 2.764128 TCCATCTCTCCCACCGGC 60.764 66.667 0.00 0.00 0.00 6.13
949 1021 4.227134 CCATCTCTCCCACCGGCG 62.227 72.222 0.00 0.00 0.00 6.46
950 1022 4.227134 CATCTCTCCCACCGGCGG 62.227 72.222 27.06 27.06 0.00 6.13
983 1055 1.535687 AGGTTGGTCGGCAGGTAGT 60.536 57.895 0.00 0.00 0.00 2.73
1161 1260 2.487428 CTCTGTGCGTCCTCTCCG 59.513 66.667 0.00 0.00 0.00 4.63
1171 1270 4.862823 CCTCTCCGTCCCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
1264 1365 1.723288 CCCTGTTCCCCTCTATCTCC 58.277 60.000 0.00 0.00 0.00 3.71
1352 1453 4.813526 CGCCTCACCGACGACGAG 62.814 72.222 9.28 1.18 42.66 4.18
1377 1478 2.048127 GGAAGGTGCGCGTCTCTT 60.048 61.111 8.43 8.83 0.00 2.85
1382 1495 2.127232 GTGCGCGTCTCTTTTGCC 60.127 61.111 8.43 0.00 0.00 4.52
1405 1518 1.680735 TGTGTTGGGTTTGATGCTGTC 59.319 47.619 0.00 0.00 0.00 3.51
1411 1524 1.545428 GGGTTTGATGCTGTCACCTCA 60.545 52.381 0.00 0.00 36.32 3.86
1436 1550 1.079503 GATGGTCGGAGCTGTTGTTC 58.920 55.000 8.82 0.00 0.00 3.18
1468 1582 3.785859 GTCGAGCAGGCCATGGGA 61.786 66.667 15.13 0.00 0.00 4.37
1518 1632 1.583054 GTGCGGGATATTGGTGAGTC 58.417 55.000 0.00 0.00 0.00 3.36
1634 1753 5.817816 AGTACACTTCATCCCGATTGAAATC 59.182 40.000 0.00 0.00 0.00 2.17
1673 1792 3.812609 TGAACAATGCGCTACTTTCTCAA 59.187 39.130 9.73 0.00 0.00 3.02
1674 1793 4.274705 TGAACAATGCGCTACTTTCTCAAA 59.725 37.500 9.73 0.00 0.00 2.69
1771 1892 1.786928 GCTAATGTCGCAGCGTTGTTC 60.787 52.381 15.93 2.56 0.00 3.18
1801 1922 4.380531 TCTTGCCAGTAGACAGAAAACAG 58.619 43.478 0.00 0.00 0.00 3.16
1806 1927 4.022849 GCCAGTAGACAGAAAACAGCATTT 60.023 41.667 0.00 0.00 0.00 2.32
1813 1934 6.675987 AGACAGAAAACAGCATTTCTTCATC 58.324 36.000 8.82 7.74 45.05 2.92
1815 1936 5.239306 ACAGAAAACAGCATTTCTTCATCGA 59.761 36.000 8.82 0.00 45.05 3.59
1880 2043 2.822255 GCTTCCCGCGGTTATGCA 60.822 61.111 26.12 0.00 34.15 3.96
1932 2095 1.202651 GCCGTGCCTATGAGGTATTGT 60.203 52.381 0.00 0.00 37.80 2.71
1940 2103 5.174395 GCCTATGAGGTATTGTCTGCATAG 58.826 45.833 0.00 0.00 37.80 2.23
1955 2118 4.518970 TCTGCATAGTGTTTTCAAGTTCCC 59.481 41.667 0.00 0.00 0.00 3.97
1975 2138 2.545742 CCTTGCCTGTTTGTTTGCTACC 60.546 50.000 0.00 0.00 0.00 3.18
2032 2196 2.292267 CTATTCCAGGATGCACACCAC 58.708 52.381 13.19 0.00 31.97 4.16
2035 2199 1.126948 TCCAGGATGCACACCACTCA 61.127 55.000 13.19 0.00 31.97 3.41
2049 2213 4.771577 ACACCACTCAATTATTGATGGCAA 59.228 37.500 23.47 0.00 39.68 4.52
2132 2296 2.500098 GGTATGTGACCCTGCTGAAGTA 59.500 50.000 0.00 0.00 43.25 2.24
2181 2345 8.155821 AGATGATCTTCATGCTACTTTGAATG 57.844 34.615 10.90 0.00 37.20 2.67
2331 2500 1.148273 AAGAGCCGTGGCACTTTGA 59.852 52.632 16.42 0.00 46.71 2.69
2332 2501 0.250901 AAGAGCCGTGGCACTTTGAT 60.251 50.000 16.42 2.41 46.71 2.57
2433 2602 1.351017 ACTCAAAAAGCTCGGGATCCA 59.649 47.619 15.23 0.00 0.00 3.41
2560 2833 6.238293 GCGAGGTATTACCACTAAAATGTTCC 60.238 42.308 15.19 0.00 41.95 3.62
2563 2836 9.185680 GAGGTATTACCACTAAAATGTTCCAAT 57.814 33.333 15.19 0.00 41.95 3.16
2882 3155 3.459232 TTCATTCCGCTGTCCTATGAG 57.541 47.619 0.00 0.00 0.00 2.90
3046 3324 0.904865 TGACAGGGAAGAGTCGCCAT 60.905 55.000 7.29 0.00 37.42 4.40
3378 3656 1.556713 GGGGATATCAGGAGGAGCCAT 60.557 57.143 4.83 0.00 40.02 4.40
3413 3691 3.663176 AACCGAAGACGACGCCGA 61.663 61.111 0.00 0.00 42.66 5.54
3531 3809 3.132481 GAGGAAGAGCCGAGAGCCG 62.132 68.421 0.00 0.00 45.47 5.52
3543 3821 2.363147 GAGCCGGGAGAGGTGTCT 60.363 66.667 2.18 0.00 34.86 3.41
3565 3843 2.045926 GCACGGAGGATGGCAGTT 60.046 61.111 0.00 0.00 0.00 3.16
3769 4050 1.075525 ATCCCTGGCCTACGTGCTA 60.076 57.895 3.32 0.00 0.00 3.49
3797 4078 2.271800 GATTTGATGAGGTTCGTCGCT 58.728 47.619 0.00 0.00 35.21 4.93
3798 4079 1.710013 TTTGATGAGGTTCGTCGCTC 58.290 50.000 0.00 0.00 35.21 5.03
3815 4099 1.734047 GCTCTGTGTAGGCTCTGTTCG 60.734 57.143 0.00 0.00 0.00 3.95
3876 4160 3.429822 CGTATGTGTAGGATCCACGGTTT 60.430 47.826 15.82 0.00 35.56 3.27
3936 4220 4.791334 TGGTAATTTAGGTTGGATCCCTGA 59.209 41.667 9.90 0.00 33.35 3.86
4073 4533 7.336931 GGATTTTGGTATCGATACATAGGCATT 59.663 37.037 31.03 11.94 34.98 3.56
4108 4568 9.442047 AAAATTTATATCTCTGGATGATCCGAC 57.558 33.333 7.03 0.00 40.17 4.79
4109 4569 5.819825 TTATATCTCTGGATGATCCGACG 57.180 43.478 7.03 0.00 40.17 5.12
4110 4570 2.278332 ATCTCTGGATGATCCGACGA 57.722 50.000 7.03 3.08 40.17 4.20
4111 4571 2.278332 TCTCTGGATGATCCGACGAT 57.722 50.000 7.03 0.00 40.17 3.73
4112 4572 1.882623 TCTCTGGATGATCCGACGATG 59.117 52.381 7.03 0.00 40.17 3.84
4113 4573 0.315251 TCTGGATGATCCGACGATGC 59.685 55.000 7.03 0.00 40.17 3.91
4114 4574 0.032540 CTGGATGATCCGACGATGCA 59.967 55.000 7.03 0.00 40.17 3.96
4121 4581 0.451783 ATCCGACGATGCAAAAAGGC 59.548 50.000 0.00 0.00 0.00 4.35
4168 4671 3.648545 ACTTTCAGGTTGCTTACTCTCCT 59.351 43.478 0.00 0.00 0.00 3.69
4169 4672 3.685139 TTCAGGTTGCTTACTCTCCTG 57.315 47.619 0.00 0.00 44.69 3.86
4179 4682 3.339141 CTTACTCTCCTGAGGCAAAACC 58.661 50.000 0.00 0.00 44.29 3.27
4186 4689 1.593196 CTGAGGCAAAACCGAAGTGA 58.407 50.000 0.00 0.00 46.52 3.41
4187 4690 1.532868 CTGAGGCAAAACCGAAGTGAG 59.467 52.381 0.00 0.00 46.52 3.51
4188 4691 0.875059 GAGGCAAAACCGAAGTGAGG 59.125 55.000 0.00 0.00 46.52 3.86
4189 4692 0.182775 AGGCAAAACCGAAGTGAGGT 59.817 50.000 0.00 0.00 46.52 3.85
4190 4693 0.310854 GGCAAAACCGAAGTGAGGTG 59.689 55.000 0.00 0.00 41.95 4.00
4191 4694 0.310854 GCAAAACCGAAGTGAGGTGG 59.689 55.000 0.00 0.00 41.95 4.61
4192 4695 0.951558 CAAAACCGAAGTGAGGTGGG 59.048 55.000 0.00 0.00 41.95 4.61
4193 4696 0.549469 AAAACCGAAGTGAGGTGGGT 59.451 50.000 0.00 0.00 41.95 4.51
4194 4697 0.179029 AAACCGAAGTGAGGTGGGTG 60.179 55.000 0.00 0.00 41.95 4.61
4230 4733 6.808829 TCAAGGGATATGTGAAATTGAATGC 58.191 36.000 0.00 0.00 0.00 3.56
4254 4757 1.079503 GCCGCTTTCGACTCTGATTT 58.920 50.000 0.00 0.00 38.10 2.17
4266 4769 4.377841 CGACTCTGATTTTCTTCAAGGTGC 60.378 45.833 0.00 0.00 0.00 5.01
4301 5264 6.523035 TTCTGAGAGATGATAGAGGTACCT 57.477 41.667 16.26 16.26 0.00 3.08
4324 5287 6.292757 CCTTCATAGCAACGATGAATGAGAAG 60.293 42.308 0.00 3.12 41.31 2.85
4367 5330 1.128200 TATGGCAGAACCTATGGCGT 58.872 50.000 0.00 0.00 45.63 5.68
4370 5333 1.429423 GCAGAACCTATGGCGTTGC 59.571 57.895 0.00 0.00 0.00 4.17
4388 5351 4.553429 CGTTGCGATTTGGTTTGAATCTAC 59.447 41.667 0.00 0.00 32.60 2.59
4402 5366 3.384789 TGAATCTACCTCAATCAGTCGGG 59.615 47.826 0.00 0.00 0.00 5.14
4407 5371 1.831736 ACCTCAATCAGTCGGGGTAAG 59.168 52.381 0.00 0.00 0.00 2.34
4464 5429 3.624861 CACAACTATGCATGAAGGAGGTC 59.375 47.826 10.16 0.00 0.00 3.85
4515 5487 4.832248 TGAAGACTGTTATCACATGTCCC 58.168 43.478 0.00 0.00 34.28 4.46
4516 5488 3.526931 AGACTGTTATCACATGTCCCG 57.473 47.619 0.00 0.00 34.28 5.14
4517 5489 3.096852 AGACTGTTATCACATGTCCCGA 58.903 45.455 0.00 0.00 34.28 5.14
4562 5535 4.967036 ACATTGCCCTAGAGAAGCTAATC 58.033 43.478 0.00 0.00 0.00 1.75
4680 5662 9.826574 CAATGAATAATGAGGGATTTGAATGTT 57.173 29.630 0.00 0.00 0.00 2.71
4713 5696 2.095008 ACAATGTTGTGTGTGCGACAAA 60.095 40.909 0.00 0.00 40.49 2.83
4714 5697 2.919859 CAATGTTGTGTGTGCGACAAAA 59.080 40.909 0.00 0.00 35.91 2.44
4741 5724 3.890756 TGCCACACAATTGACTCATTCTT 59.109 39.130 13.59 0.00 0.00 2.52
4744 5727 5.464168 CCACACAATTGACTCATTCTTTCC 58.536 41.667 13.59 0.00 0.00 3.13
4746 5729 5.009911 CACACAATTGACTCATTCTTTCCCA 59.990 40.000 13.59 0.00 0.00 4.37
4820 5804 3.388024 TGAGCTTGGAACACTACAGTTCT 59.612 43.478 6.77 0.00 45.52 3.01
4824 5808 4.686554 GCTTGGAACACTACAGTTCTACTG 59.313 45.833 5.33 5.33 46.12 2.74
4859 5843 2.045926 AGATCGCTGGCCACCAAC 60.046 61.111 0.00 0.00 30.80 3.77
4866 5850 1.662044 CTGGCCACCAACAAGCTTC 59.338 57.895 0.00 0.00 30.80 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.721478 CAAGTTCCCATGTTACAGCATATATAC 58.279 37.037 0.00 0.00 0.00 1.47
90 93 6.716628 TCAGGAGATTATACAAATCAATGGGC 59.283 38.462 1.01 0.00 0.00 5.36
111 114 1.867233 CACACCAACTTCGAGTTCAGG 59.133 52.381 0.00 0.00 36.03 3.86
135 138 6.601613 GGACAATAATGTTACCATTCCTCACA 59.398 38.462 0.00 0.00 41.50 3.58
167 177 3.370840 TTGATCAGGCAAGCAGGTAAT 57.629 42.857 0.00 0.00 0.00 1.89
208 218 1.160137 GAGGCCAACAAGCAGTAGTG 58.840 55.000 5.01 0.00 0.00 2.74
323 333 0.802494 CAGACACCGGCATTACAACC 59.198 55.000 0.00 0.00 0.00 3.77
364 377 7.928908 TCACTTAAATTCGTACAACTTACGT 57.071 32.000 0.00 0.00 41.25 3.57
365 378 9.298113 CTTTCACTTAAATTCGTACAACTTACG 57.702 33.333 0.00 0.00 41.79 3.18
370 383 9.789029 GAGTACTTTCACTTAAATTCGTACAAC 57.211 33.333 0.00 0.00 32.58 3.32
371 384 9.754382 AGAGTACTTTCACTTAAATTCGTACAA 57.246 29.630 0.00 0.00 32.58 2.41
376 389 9.595357 GGAAAAGAGTACTTTCACTTAAATTCG 57.405 33.333 0.00 0.00 44.32 3.34
377 390 9.894783 GGGAAAAGAGTACTTTCACTTAAATTC 57.105 33.333 0.00 0.00 44.32 2.17
378 391 9.416284 TGGGAAAAGAGTACTTTCACTTAAATT 57.584 29.630 8.99 0.00 44.32 1.82
379 392 8.990163 TGGGAAAAGAGTACTTTCACTTAAAT 57.010 30.769 8.99 0.00 44.32 1.40
380 393 8.810990 TTGGGAAAAGAGTACTTTCACTTAAA 57.189 30.769 8.99 0.00 44.32 1.52
381 394 7.012989 GCTTGGGAAAAGAGTACTTTCACTTAA 59.987 37.037 8.99 0.00 44.32 1.85
382 395 6.485648 GCTTGGGAAAAGAGTACTTTCACTTA 59.514 38.462 8.99 0.00 44.32 2.24
384 397 4.822350 GCTTGGGAAAAGAGTACTTTCACT 59.178 41.667 8.99 0.00 44.32 3.41
385 398 4.822350 AGCTTGGGAAAAGAGTACTTTCAC 59.178 41.667 0.00 0.00 44.32 3.18
387 400 5.049336 GTGAGCTTGGGAAAAGAGTACTTTC 60.049 44.000 0.00 0.00 44.32 2.62
388 401 4.822350 GTGAGCTTGGGAAAAGAGTACTTT 59.178 41.667 0.00 0.00 46.64 2.66
389 402 4.390264 GTGAGCTTGGGAAAAGAGTACTT 58.610 43.478 0.00 0.00 38.05 2.24
391 404 2.737252 CGTGAGCTTGGGAAAAGAGTAC 59.263 50.000 0.00 0.00 0.00 2.73
393 406 1.543429 CCGTGAGCTTGGGAAAAGAGT 60.543 52.381 0.00 0.00 0.00 3.24
394 407 1.160137 CCGTGAGCTTGGGAAAAGAG 58.840 55.000 0.00 0.00 0.00 2.85
402 415 0.321564 TGTTCATCCCGTGAGCTTGG 60.322 55.000 0.00 0.00 38.70 3.61
403 416 1.522668 TTGTTCATCCCGTGAGCTTG 58.477 50.000 0.00 0.00 38.70 4.01
404 417 2.496899 ATTGTTCATCCCGTGAGCTT 57.503 45.000 0.00 0.00 38.70 3.74
405 418 3.627395 TTATTGTTCATCCCGTGAGCT 57.373 42.857 0.00 0.00 38.70 4.09
406 419 4.695217 TTTTATTGTTCATCCCGTGAGC 57.305 40.909 0.00 0.00 38.29 4.26
407 420 6.435430 TGATTTTATTGTTCATCCCGTGAG 57.565 37.500 0.00 0.00 38.29 3.51
408 421 5.356751 CCTGATTTTATTGTTCATCCCGTGA 59.643 40.000 0.00 0.00 34.25 4.35
409 422 5.356751 TCCTGATTTTATTGTTCATCCCGTG 59.643 40.000 0.00 0.00 0.00 4.94
410 423 5.505780 TCCTGATTTTATTGTTCATCCCGT 58.494 37.500 0.00 0.00 0.00 5.28
411 424 6.449635 TTCCTGATTTTATTGTTCATCCCG 57.550 37.500 0.00 0.00 0.00 5.14
480 493 9.405587 GCTGTAATTTTACAAGCACTCAAAATA 57.594 29.630 14.49 0.00 42.55 1.40
481 494 7.114811 CGCTGTAATTTTACAAGCACTCAAAAT 59.885 33.333 17.20 0.00 42.55 1.82
482 495 6.416455 CGCTGTAATTTTACAAGCACTCAAAA 59.584 34.615 17.20 0.00 42.55 2.44
483 496 5.912396 CGCTGTAATTTTACAAGCACTCAAA 59.088 36.000 17.20 0.00 42.55 2.69
484 497 5.008217 ACGCTGTAATTTTACAAGCACTCAA 59.992 36.000 17.20 0.00 42.55 3.02
485 498 4.513692 ACGCTGTAATTTTACAAGCACTCA 59.486 37.500 17.20 0.00 42.55 3.41
486 499 5.030874 ACGCTGTAATTTTACAAGCACTC 57.969 39.130 17.20 2.01 42.55 3.51
487 500 5.432885 AACGCTGTAATTTTACAAGCACT 57.567 34.783 17.20 7.29 42.55 4.40
488 501 7.611821 TTTAACGCTGTAATTTTACAAGCAC 57.388 32.000 17.20 5.00 42.55 4.40
489 502 8.076781 TCATTTAACGCTGTAATTTTACAAGCA 58.923 29.630 17.20 5.68 42.55 3.91
490 503 8.363029 GTCATTTAACGCTGTAATTTTACAAGC 58.637 33.333 4.82 8.85 42.55 4.01
491 504 9.388346 TGTCATTTAACGCTGTAATTTTACAAG 57.612 29.630 4.82 4.85 42.55 3.16
492 505 9.900710 ATGTCATTTAACGCTGTAATTTTACAA 57.099 25.926 4.82 0.00 42.55 2.41
493 506 9.900710 AATGTCATTTAACGCTGTAATTTTACA 57.099 25.926 3.34 3.34 41.06 2.41
496 509 9.255304 ACAAATGTCATTTAACGCTGTAATTTT 57.745 25.926 10.46 0.00 0.00 1.82
497 510 8.810652 ACAAATGTCATTTAACGCTGTAATTT 57.189 26.923 10.46 0.00 0.00 1.82
498 511 9.554724 CTACAAATGTCATTTAACGCTGTAATT 57.445 29.630 10.46 0.00 0.00 1.40
499 512 8.941977 TCTACAAATGTCATTTAACGCTGTAAT 58.058 29.630 10.46 0.00 0.00 1.89
500 513 8.312896 TCTACAAATGTCATTTAACGCTGTAA 57.687 30.769 10.46 0.00 0.00 2.41
501 514 7.892778 TCTACAAATGTCATTTAACGCTGTA 57.107 32.000 10.46 7.68 0.00 2.74
502 515 6.795098 TCTACAAATGTCATTTAACGCTGT 57.205 33.333 10.46 6.96 0.00 4.40
503 516 7.298122 ACTTCTACAAATGTCATTTAACGCTG 58.702 34.615 10.46 1.22 0.00 5.18
504 517 7.435068 ACTTCTACAAATGTCATTTAACGCT 57.565 32.000 10.46 0.00 0.00 5.07
505 518 6.461698 CGACTTCTACAAATGTCATTTAACGC 59.538 38.462 10.46 0.00 0.00 4.84
506 519 7.474332 CACGACTTCTACAAATGTCATTTAACG 59.526 37.037 10.46 9.55 0.00 3.18
507 520 7.744715 CCACGACTTCTACAAATGTCATTTAAC 59.255 37.037 10.46 0.00 0.00 2.01
508 521 7.658167 TCCACGACTTCTACAAATGTCATTTAA 59.342 33.333 10.46 1.40 0.00 1.52
509 522 7.156000 TCCACGACTTCTACAAATGTCATTTA 58.844 34.615 10.46 0.00 0.00 1.40
510 523 5.995282 TCCACGACTTCTACAAATGTCATTT 59.005 36.000 4.91 4.91 0.00 2.32
511 524 5.547465 TCCACGACTTCTACAAATGTCATT 58.453 37.500 0.00 0.00 0.00 2.57
512 525 5.147330 TCCACGACTTCTACAAATGTCAT 57.853 39.130 0.00 0.00 0.00 3.06
513 526 4.594123 TCCACGACTTCTACAAATGTCA 57.406 40.909 0.00 0.00 0.00 3.58
514 527 5.917541 TTTCCACGACTTCTACAAATGTC 57.082 39.130 0.00 0.00 0.00 3.06
515 528 6.687081 TTTTTCCACGACTTCTACAAATGT 57.313 33.333 0.00 0.00 0.00 2.71
538 551 8.553696 GCATTTTTGAGTGATGATTTTGTCTTT 58.446 29.630 0.00 0.00 0.00 2.52
539 552 7.929785 AGCATTTTTGAGTGATGATTTTGTCTT 59.070 29.630 0.00 0.00 0.00 3.01
540 553 7.439381 AGCATTTTTGAGTGATGATTTTGTCT 58.561 30.769 0.00 0.00 0.00 3.41
541 554 7.647907 AGCATTTTTGAGTGATGATTTTGTC 57.352 32.000 0.00 0.00 0.00 3.18
542 555 8.441312 AAAGCATTTTTGAGTGATGATTTTGT 57.559 26.923 0.00 0.00 36.36 2.83
559 572 8.667463 CCGAAAATATCATTTCCAAAAGCATTT 58.333 29.630 0.00 0.00 36.54 2.32
560 573 7.823799 ACCGAAAATATCATTTCCAAAAGCATT 59.176 29.630 0.00 0.00 36.21 3.56
561 574 7.278424 CACCGAAAATATCATTTCCAAAAGCAT 59.722 33.333 0.00 0.00 36.21 3.79
562 575 6.589523 CACCGAAAATATCATTTCCAAAAGCA 59.410 34.615 0.00 0.00 36.21 3.91
563 576 6.455513 GCACCGAAAATATCATTTCCAAAAGC 60.456 38.462 0.00 0.00 36.21 3.51
564 577 6.589523 TGCACCGAAAATATCATTTCCAAAAG 59.410 34.615 0.00 0.00 36.21 2.27
565 578 6.459066 TGCACCGAAAATATCATTTCCAAAA 58.541 32.000 0.00 0.00 36.21 2.44
566 579 6.030548 TGCACCGAAAATATCATTTCCAAA 57.969 33.333 0.00 0.00 36.21 3.28
567 580 5.651387 TGCACCGAAAATATCATTTCCAA 57.349 34.783 0.00 0.00 36.21 3.53
568 581 5.359292 TGATGCACCGAAAATATCATTTCCA 59.641 36.000 0.00 0.00 36.21 3.53
569 582 5.830912 TGATGCACCGAAAATATCATTTCC 58.169 37.500 0.00 0.00 36.21 3.13
570 583 7.935338 AATGATGCACCGAAAATATCATTTC 57.065 32.000 0.00 0.00 42.59 2.17
572 585 8.721019 AAAAATGATGCACCGAAAATATCATT 57.279 26.923 0.00 0.00 45.36 2.57
598 611 5.421693 ACATATGTAGAAGCCATGGCAAAAA 59.578 36.000 37.18 17.79 44.88 1.94
599 612 4.955450 ACATATGTAGAAGCCATGGCAAAA 59.045 37.500 37.18 17.42 44.88 2.44
600 613 4.535781 ACATATGTAGAAGCCATGGCAAA 58.464 39.130 37.18 17.06 44.88 3.68
601 614 4.136796 GACATATGTAGAAGCCATGGCAA 58.863 43.478 37.18 17.42 44.88 4.52
602 615 3.136260 TGACATATGTAGAAGCCATGGCA 59.864 43.478 37.18 17.20 44.88 4.92
603 616 3.743521 TGACATATGTAGAAGCCATGGC 58.256 45.455 30.12 30.12 42.33 4.40
604 617 6.487668 TGAAATGACATATGTAGAAGCCATGG 59.512 38.462 8.71 7.63 0.00 3.66
605 618 7.500720 TGAAATGACATATGTAGAAGCCATG 57.499 36.000 8.71 0.00 0.00 3.66
623 636 6.073494 TGCTTGCAAAGTTTCATCATGAAATG 60.073 34.615 15.91 11.25 46.55 2.32
624 637 5.992829 TGCTTGCAAAGTTTCATCATGAAAT 59.007 32.000 15.91 0.00 46.55 2.17
638 651 6.705287 ACAAATGGTGTCAATGCTTGCAAAG 61.705 40.000 0.00 0.00 41.72 2.77
639 652 3.472283 AATGGTGTCAATGCTTGCAAA 57.528 38.095 0.00 0.00 0.00 3.68
640 653 3.132160 CAAATGGTGTCAATGCTTGCAA 58.868 40.909 0.00 0.00 0.00 4.08
641 654 2.102757 ACAAATGGTGTCAATGCTTGCA 59.897 40.909 0.00 0.00 34.38 4.08
642 655 2.758009 ACAAATGGTGTCAATGCTTGC 58.242 42.857 0.00 0.00 34.38 4.01
652 665 5.126869 TGTGACAAAGATTGACAAATGGTGT 59.873 36.000 0.00 0.00 45.74 4.16
653 666 5.590145 TGTGACAAAGATTGACAAATGGTG 58.410 37.500 0.00 0.00 37.10 4.17
654 667 5.850557 TGTGACAAAGATTGACAAATGGT 57.149 34.783 0.00 0.00 37.10 3.55
655 668 6.041511 TGTTGTGACAAAGATTGACAAATGG 58.958 36.000 0.00 0.00 37.10 3.16
656 669 7.522901 TTGTTGTGACAAAGATTGACAAATG 57.477 32.000 0.00 0.00 42.54 2.32
717 730 9.077885 AGCTCTGGTGAATAGTAAAATCAAAAA 57.922 29.630 0.00 0.00 0.00 1.94
718 731 8.635765 AGCTCTGGTGAATAGTAAAATCAAAA 57.364 30.769 0.00 0.00 0.00 2.44
719 732 8.514594 CAAGCTCTGGTGAATAGTAAAATCAAA 58.485 33.333 0.00 0.00 0.00 2.69
720 733 7.665559 ACAAGCTCTGGTGAATAGTAAAATCAA 59.334 33.333 0.00 0.00 0.00 2.57
721 734 7.168219 ACAAGCTCTGGTGAATAGTAAAATCA 58.832 34.615 0.00 0.00 0.00 2.57
722 735 7.617041 ACAAGCTCTGGTGAATAGTAAAATC 57.383 36.000 0.00 0.00 0.00 2.17
723 736 8.322091 ACTACAAGCTCTGGTGAATAGTAAAAT 58.678 33.333 0.00 0.00 0.00 1.82
724 737 7.676947 ACTACAAGCTCTGGTGAATAGTAAAA 58.323 34.615 0.00 0.00 0.00 1.52
725 738 7.241042 ACTACAAGCTCTGGTGAATAGTAAA 57.759 36.000 0.00 0.00 0.00 2.01
726 739 6.852420 ACTACAAGCTCTGGTGAATAGTAA 57.148 37.500 0.00 0.00 0.00 2.24
727 740 7.014326 CCATACTACAAGCTCTGGTGAATAGTA 59.986 40.741 0.00 0.00 0.00 1.82
728 741 6.183360 CCATACTACAAGCTCTGGTGAATAGT 60.183 42.308 0.00 0.00 0.00 2.12
729 742 6.219473 CCATACTACAAGCTCTGGTGAATAG 58.781 44.000 0.00 0.00 0.00 1.73
730 743 5.453339 GCCATACTACAAGCTCTGGTGAATA 60.453 44.000 0.00 0.00 0.00 1.75
731 744 4.684485 GCCATACTACAAGCTCTGGTGAAT 60.684 45.833 0.00 0.00 0.00 2.57
732 745 3.369471 GCCATACTACAAGCTCTGGTGAA 60.369 47.826 0.00 0.00 0.00 3.18
733 746 2.168521 GCCATACTACAAGCTCTGGTGA 59.831 50.000 0.00 0.00 0.00 4.02
734 747 2.093500 TGCCATACTACAAGCTCTGGTG 60.093 50.000 0.00 0.00 0.00 4.17
735 748 2.187958 TGCCATACTACAAGCTCTGGT 58.812 47.619 0.00 0.00 0.00 4.00
736 749 2.988010 TGCCATACTACAAGCTCTGG 57.012 50.000 0.00 0.00 0.00 3.86
737 750 4.128925 TCTTGCCATACTACAAGCTCTG 57.871 45.455 0.00 0.00 42.41 3.35
738 751 4.467795 TCTTCTTGCCATACTACAAGCTCT 59.532 41.667 0.00 0.00 42.41 4.09
739 752 4.759782 TCTTCTTGCCATACTACAAGCTC 58.240 43.478 0.00 0.00 42.41 4.09
740 753 4.826274 TCTTCTTGCCATACTACAAGCT 57.174 40.909 0.00 0.00 42.41 3.74
741 754 4.695455 TGTTCTTCTTGCCATACTACAAGC 59.305 41.667 0.00 0.00 42.41 4.01
742 755 6.820656 AGATGTTCTTCTTGCCATACTACAAG 59.179 38.462 0.00 0.00 43.73 3.16
743 756 6.711277 AGATGTTCTTCTTGCCATACTACAA 58.289 36.000 0.00 0.00 0.00 2.41
744 757 6.155221 AGAGATGTTCTTCTTGCCATACTACA 59.845 38.462 0.00 0.00 29.61 2.74
745 758 6.578023 AGAGATGTTCTTCTTGCCATACTAC 58.422 40.000 0.00 0.00 29.61 2.73
746 759 6.798427 AGAGATGTTCTTCTTGCCATACTA 57.202 37.500 0.00 0.00 29.61 1.82
747 760 5.690464 AGAGATGTTCTTCTTGCCATACT 57.310 39.130 0.00 0.00 29.61 2.12
748 761 6.989169 ACATAGAGATGTTCTTCTTGCCATAC 59.011 38.462 0.00 0.00 44.18 2.39
749 762 7.129457 ACATAGAGATGTTCTTCTTGCCATA 57.871 36.000 0.00 0.00 44.18 2.74
750 763 5.999044 ACATAGAGATGTTCTTCTTGCCAT 58.001 37.500 0.00 0.00 44.18 4.40
751 764 5.426689 ACATAGAGATGTTCTTCTTGCCA 57.573 39.130 0.00 0.00 44.18 4.92
752 765 6.341316 TGTACATAGAGATGTTCTTCTTGCC 58.659 40.000 0.00 0.00 44.18 4.52
753 766 7.547370 AGTTGTACATAGAGATGTTCTTCTTGC 59.453 37.037 0.00 0.00 44.18 4.01
754 767 8.994429 AGTTGTACATAGAGATGTTCTTCTTG 57.006 34.615 0.00 0.00 44.18 3.02
755 768 7.971168 CGAGTTGTACATAGAGATGTTCTTCTT 59.029 37.037 0.00 0.00 44.18 2.52
756 769 7.476667 CGAGTTGTACATAGAGATGTTCTTCT 58.523 38.462 0.00 0.00 44.18 2.85
757 770 6.197468 GCGAGTTGTACATAGAGATGTTCTTC 59.803 42.308 0.00 0.00 44.18 2.87
758 771 6.037098 GCGAGTTGTACATAGAGATGTTCTT 58.963 40.000 0.00 0.00 44.18 2.52
759 772 5.450688 GGCGAGTTGTACATAGAGATGTTCT 60.451 44.000 0.00 0.00 44.18 3.01
760 773 4.740695 GGCGAGTTGTACATAGAGATGTTC 59.259 45.833 0.00 0.00 44.18 3.18
761 774 4.159693 TGGCGAGTTGTACATAGAGATGTT 59.840 41.667 0.00 0.00 44.18 2.71
763 776 4.307443 TGGCGAGTTGTACATAGAGATG 57.693 45.455 0.00 0.00 39.16 2.90
764 777 5.339008 TTTGGCGAGTTGTACATAGAGAT 57.661 39.130 0.00 0.00 0.00 2.75
765 778 4.794278 TTTGGCGAGTTGTACATAGAGA 57.206 40.909 0.00 0.00 0.00 3.10
766 779 7.491372 TCTTATTTTGGCGAGTTGTACATAGAG 59.509 37.037 0.00 0.00 0.00 2.43
767 780 7.324935 TCTTATTTTGGCGAGTTGTACATAGA 58.675 34.615 0.00 0.00 0.00 1.98
768 781 7.534085 TCTTATTTTGGCGAGTTGTACATAG 57.466 36.000 0.00 0.00 0.00 2.23
769 782 7.604927 ACTTCTTATTTTGGCGAGTTGTACATA 59.395 33.333 0.00 0.00 0.00 2.29
770 783 6.430000 ACTTCTTATTTTGGCGAGTTGTACAT 59.570 34.615 0.00 0.00 0.00 2.29
771 784 5.761234 ACTTCTTATTTTGGCGAGTTGTACA 59.239 36.000 0.00 0.00 0.00 2.90
772 785 6.237313 ACTTCTTATTTTGGCGAGTTGTAC 57.763 37.500 0.00 0.00 0.00 2.90
773 786 6.347079 CGAACTTCTTATTTTGGCGAGTTGTA 60.347 38.462 0.00 0.00 0.00 2.41
774 787 5.560183 CGAACTTCTTATTTTGGCGAGTTGT 60.560 40.000 0.00 0.00 0.00 3.32
775 788 4.846137 CGAACTTCTTATTTTGGCGAGTTG 59.154 41.667 0.00 0.00 0.00 3.16
776 789 4.514066 ACGAACTTCTTATTTTGGCGAGTT 59.486 37.500 0.00 0.00 0.00 3.01
933 1005 4.227134 CCGCCGGTGGGAGAGATG 62.227 72.222 27.22 0.00 34.61 2.90
1182 1281 1.227380 CGAATGGGAGAAGAGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
1192 1291 2.460275 CGTTGATGCGCGAATGGGA 61.460 57.895 12.10 0.00 0.00 4.37
1251 1352 3.012274 GGATCATCTGGAGATAGAGGGGA 59.988 52.174 0.00 0.00 32.63 4.81
1259 1360 1.615883 CCGAACGGATCATCTGGAGAT 59.384 52.381 7.53 0.00 37.50 2.75
1264 1365 0.249489 GTCCCCGAACGGATCATCTG 60.249 60.000 15.07 0.00 37.50 2.90
1377 1478 1.258445 AAACCCAACACACCGGCAAA 61.258 50.000 0.00 0.00 0.00 3.68
1382 1495 0.318614 GCATCAAACCCAACACACCG 60.319 55.000 0.00 0.00 0.00 4.94
1405 1518 1.472201 CCGACCATCAGACATGAGGTG 60.472 57.143 0.00 0.00 39.29 4.00
1411 1524 0.463204 CAGCTCCGACCATCAGACAT 59.537 55.000 0.00 0.00 0.00 3.06
1436 1550 1.372997 CGACACAGGGAACAGACGG 60.373 63.158 0.00 0.00 0.00 4.79
1468 1582 2.289506 GCTCTTCACTTTCCCGTACCTT 60.290 50.000 0.00 0.00 0.00 3.50
1518 1632 2.900122 ATCGTGGAACAAAATGCTCG 57.100 45.000 0.00 0.00 44.16 5.03
1634 1753 1.078201 TCAACTATGTGCTCGCTGCG 61.078 55.000 17.25 17.25 46.63 5.18
1674 1793 9.492730 ACAATATAAAACTCCCCATTCATTCTT 57.507 29.630 0.00 0.00 0.00 2.52
1712 1831 5.705609 ACTGGAAATTCACGCTACATTTT 57.294 34.783 0.00 0.00 0.00 1.82
1739 1858 4.097892 TGCGACATTAGCTAGTTGATCTGA 59.902 41.667 11.50 0.00 35.28 3.27
1740 1859 4.363138 TGCGACATTAGCTAGTTGATCTG 58.637 43.478 11.50 0.00 35.28 2.90
1741 1860 4.615949 CTGCGACATTAGCTAGTTGATCT 58.384 43.478 11.50 0.00 35.28 2.75
1742 1861 3.183373 GCTGCGACATTAGCTAGTTGATC 59.817 47.826 11.50 0.00 36.99 2.92
1743 1862 3.126831 GCTGCGACATTAGCTAGTTGAT 58.873 45.455 11.50 0.00 36.99 2.57
1744 1863 2.540515 GCTGCGACATTAGCTAGTTGA 58.459 47.619 11.50 0.00 36.99 3.18
1745 1864 1.256376 CGCTGCGACATTAGCTAGTTG 59.744 52.381 18.66 0.00 37.78 3.16
1747 1866 0.456221 ACGCTGCGACATTAGCTAGT 59.544 50.000 30.47 0.00 37.78 2.57
1801 1922 2.012673 AGCCACTCGATGAAGAAATGC 58.987 47.619 0.00 0.00 0.00 3.56
1806 1927 4.537135 AACTAAAGCCACTCGATGAAGA 57.463 40.909 0.00 0.00 0.00 2.87
1813 1934 5.856126 TCAATACAAACTAAAGCCACTCG 57.144 39.130 0.00 0.00 0.00 4.18
1815 1936 7.944729 ATGATCAATACAAACTAAAGCCACT 57.055 32.000 0.00 0.00 0.00 4.00
1844 2007 5.376854 AAGCACCAGTAACTGCAAATAAG 57.623 39.130 0.00 0.00 35.73 1.73
1880 2043 9.778741 TCTTTGTCTGTTTCATACTCTACAAAT 57.221 29.630 0.00 0.00 35.18 2.32
1932 2095 4.518970 GGGAACTTGAAAACACTATGCAGA 59.481 41.667 0.00 0.00 0.00 4.26
1955 2118 2.100584 TGGTAGCAAACAAACAGGCAAG 59.899 45.455 0.00 0.00 0.00 4.01
2011 2175 1.915489 TGGTGTGCATCCTGGAATAGT 59.085 47.619 0.00 0.00 0.00 2.12
2032 2196 7.485810 TCACTTCATTGCCATCAATAATTGAG 58.514 34.615 0.00 0.00 43.98 3.02
2035 2199 7.143340 CGATCACTTCATTGCCATCAATAATT 58.857 34.615 0.00 0.00 40.74 1.40
2049 2213 7.334921 GCCTATAGTAGTCTACGATCACTTCAT 59.665 40.741 8.70 0.00 0.00 2.57
2181 2345 3.717392 AGTCCTCCTCCTATAAAAAGGCC 59.283 47.826 0.00 0.00 36.51 5.19
2331 2500 6.930722 CCTTAAAACTCCAAAGTGCAATTCAT 59.069 34.615 0.00 0.00 35.36 2.57
2332 2501 6.279882 CCTTAAAACTCCAAAGTGCAATTCA 58.720 36.000 0.00 0.00 35.36 2.57
2846 3119 6.404734 GCGGAATGAATAAAAATCCAGTCTGT 60.405 38.462 0.00 0.00 33.90 3.41
2882 3155 7.433131 CACACATGAATGTAAATGTAAGGCATC 59.567 37.037 0.00 0.00 39.39 3.91
3399 3677 3.011789 CGATCGGCGTCGTCTTCG 61.012 66.667 10.18 13.23 36.88 3.79
3419 3697 0.534203 TCGGCTTTTCCTTCGCTTGT 60.534 50.000 0.00 0.00 0.00 3.16
3543 3821 3.083349 CCATCCTCCGTGCCAGGA 61.083 66.667 0.00 0.00 44.46 3.86
3666 3947 2.580815 CTGGAGCGAGCATGGTCA 59.419 61.111 23.68 4.48 38.10 4.02
3769 4050 3.340814 ACCTCATCAAATCAAGCGAGT 57.659 42.857 0.00 0.00 0.00 4.18
3797 4078 0.888619 CCGAACAGAGCCTACACAGA 59.111 55.000 0.00 0.00 0.00 3.41
3798 4079 0.603569 ACCGAACAGAGCCTACACAG 59.396 55.000 0.00 0.00 0.00 3.66
3815 4099 1.064952 CAAGACAAACACCCGACAACC 59.935 52.381 0.00 0.00 0.00 3.77
3850 4134 0.956633 GGATCCTACACATACGGCGA 59.043 55.000 16.62 0.00 0.00 5.54
3876 4160 1.067295 ATCCCAACTGCTCAGGAACA 58.933 50.000 1.66 0.00 30.71 3.18
3921 4205 2.642171 ACAGTCAGGGATCCAACCTA 57.358 50.000 15.23 0.00 36.32 3.08
3936 4220 6.737254 AAAATTGCACGCTATACTTACAGT 57.263 33.333 0.00 0.00 0.00 3.55
3966 4261 5.105513 TCAAGCAACGTCTATACCAAGATCA 60.106 40.000 0.00 0.00 0.00 2.92
4043 4503 5.977171 TGTATCGATACCAAAATCCGTTG 57.023 39.130 28.17 0.00 32.33 4.10
4047 4507 6.170506 TGCCTATGTATCGATACCAAAATCC 58.829 40.000 28.17 13.49 32.33 3.01
4051 4511 6.530120 ACAATGCCTATGTATCGATACCAAA 58.470 36.000 28.17 13.71 32.33 3.28
4100 4560 1.737236 CCTTTTTGCATCGTCGGATCA 59.263 47.619 0.00 0.00 0.00 2.92
4104 4564 1.154035 GGCCTTTTTGCATCGTCGG 60.154 57.895 0.00 0.00 0.00 4.79
4106 4566 0.313672 TGTGGCCTTTTTGCATCGTC 59.686 50.000 3.32 0.00 0.00 4.20
4107 4567 0.031994 GTGTGGCCTTTTTGCATCGT 59.968 50.000 3.32 0.00 0.00 3.73
4108 4568 0.031857 TGTGTGGCCTTTTTGCATCG 59.968 50.000 3.32 0.00 0.00 3.84
4109 4569 2.237393 TTGTGTGGCCTTTTTGCATC 57.763 45.000 3.32 0.00 0.00 3.91
4110 4570 2.170187 TCTTTGTGTGGCCTTTTTGCAT 59.830 40.909 3.32 0.00 0.00 3.96
4111 4571 1.552337 TCTTTGTGTGGCCTTTTTGCA 59.448 42.857 3.32 0.00 0.00 4.08
4112 4572 2.307934 TCTTTGTGTGGCCTTTTTGC 57.692 45.000 3.32 0.00 0.00 3.68
4113 4573 3.594134 TGTTCTTTGTGTGGCCTTTTTG 58.406 40.909 3.32 0.00 0.00 2.44
4114 4574 3.971245 TGTTCTTTGTGTGGCCTTTTT 57.029 38.095 3.32 0.00 0.00 1.94
4121 4581 3.374745 GACAGCATTGTTCTTTGTGTGG 58.625 45.455 0.00 0.00 37.76 4.17
4168 4671 1.593196 CTCACTTCGGTTTTGCCTCA 58.407 50.000 0.00 0.00 34.25 3.86
4169 4672 0.875059 CCTCACTTCGGTTTTGCCTC 59.125 55.000 0.00 0.00 34.25 4.70
4179 4682 1.004918 GACCACCCACCTCACTTCG 60.005 63.158 0.00 0.00 0.00 3.79
4186 4689 0.472352 TCGGTTTAGACCACCCACCT 60.472 55.000 2.97 0.00 46.91 4.00
4187 4690 0.616891 ATCGGTTTAGACCACCCACC 59.383 55.000 2.97 0.00 46.91 4.61
4188 4691 1.276989 TGATCGGTTTAGACCACCCAC 59.723 52.381 2.97 0.00 46.91 4.61
4189 4692 1.646912 TGATCGGTTTAGACCACCCA 58.353 50.000 2.97 0.00 46.91 4.51
4190 4693 2.629051 CTTGATCGGTTTAGACCACCC 58.371 52.381 2.97 0.00 46.91 4.61
4191 4694 2.629051 CCTTGATCGGTTTAGACCACC 58.371 52.381 2.97 0.00 46.91 4.61
4192 4695 2.235402 TCCCTTGATCGGTTTAGACCAC 59.765 50.000 2.97 0.00 46.91 4.16
4193 4696 2.542550 TCCCTTGATCGGTTTAGACCA 58.457 47.619 2.97 0.00 46.91 4.02
4194 4697 3.840124 ATCCCTTGATCGGTTTAGACC 57.160 47.619 0.00 0.00 42.87 3.85
4254 4757 3.731652 CACCAATTGCACCTTGAAGAA 57.268 42.857 9.28 0.00 0.00 2.52
4266 4769 5.124936 TCATCTCTCAGAATTGCACCAATTG 59.875 40.000 7.82 0.00 43.05 2.32
4279 4782 6.101881 TGAAGGTACCTCTATCATCTCTCAGA 59.898 42.308 16.64 0.00 0.00 3.27
4301 5264 5.007039 GCTTCTCATTCATCGTTGCTATGAA 59.993 40.000 0.00 0.00 44.92 2.57
4324 5287 2.029649 AGCATCCACACAAACATCAAGC 60.030 45.455 0.00 0.00 0.00 4.01
4367 5330 4.764823 AGGTAGATTCAAACCAAATCGCAA 59.235 37.500 9.96 0.00 38.02 4.85
4370 5333 6.494893 TTGAGGTAGATTCAAACCAAATCG 57.505 37.500 9.96 0.00 38.02 3.34
4388 5351 1.473434 GCTTACCCCGACTGATTGAGG 60.473 57.143 0.00 0.00 0.00 3.86
4402 5366 6.216569 TCAGAGTTGATATCATTCGCTTACC 58.783 40.000 6.17 0.00 0.00 2.85
4407 5371 7.178741 GCATTATCAGAGTTGATATCATTCGC 58.821 38.462 6.17 5.29 43.82 4.70
4430 5395 3.559655 GCATAGTTGTGATTACATCGGCA 59.440 43.478 0.00 0.00 36.53 5.69
4464 5429 2.252260 CGCAAGACCAGCAAACGG 59.748 61.111 0.00 0.00 43.02 4.44
4546 5519 6.097696 GGGCTATTAGATTAGCTTCTCTAGGG 59.902 46.154 0.00 0.00 43.37 3.53
4562 5535 9.678260 AAATCTAGCTAATTCATGGGCTATTAG 57.322 33.333 0.00 3.64 36.81 1.73
4596 5578 4.079253 GGGCTCATCTAACCAAGTTTCAA 58.921 43.478 0.00 0.00 0.00 2.69
4597 5579 3.561313 GGGGCTCATCTAACCAAGTTTCA 60.561 47.826 0.00 0.00 0.00 2.69
4600 5582 1.285078 GGGGGCTCATCTAACCAAGTT 59.715 52.381 0.00 0.00 0.00 2.66
4713 5696 5.426504 TGAGTCAATTGTGTGGCAAAAATT 58.573 33.333 5.13 0.00 40.91 1.82
4714 5697 5.021033 TGAGTCAATTGTGTGGCAAAAAT 57.979 34.783 5.13 0.00 40.91 1.82
4820 5804 4.093743 TCCTTGTGCCTGAGTAATCAGTA 58.906 43.478 18.19 5.02 36.06 2.74
4824 5808 3.895232 TCTCCTTGTGCCTGAGTAATC 57.105 47.619 0.00 0.00 0.00 1.75
4839 5823 3.474570 GGTGGCCAGCGATCTCCT 61.475 66.667 20.97 0.00 0.00 3.69
4840 5824 3.329542 TTGGTGGCCAGCGATCTCC 62.330 63.158 28.67 14.60 33.81 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.