Multiple sequence alignment - TraesCS5B01G296700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G296700 chr5B 100.000 3149 0 0 1 3149 479779536 479776388 0.000000e+00 5816
1 TraesCS5B01G296700 chr5D 91.298 2011 110 24 589 2556 399633501 399631513 0.000000e+00 2684
2 TraesCS5B01G296700 chr5D 86.031 587 45 14 2576 3149 399630175 399629613 2.090000e-166 595
3 TraesCS5B01G296700 chr5A 89.179 2033 121 47 589 2561 505208076 505206083 0.000000e+00 2444
4 TraesCS5B01G296700 chr5A 83.646 587 55 15 2576 3149 505034471 505033913 6.020000e-142 514
5 TraesCS5B01G296700 chr5A 78.913 773 87 43 86 832 505290628 505289906 3.700000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G296700 chr5B 479776388 479779536 3148 True 5816.0 5816 100.0000 1 3149 1 chr5B.!!$R1 3148
1 TraesCS5B01G296700 chr5D 399629613 399633501 3888 True 1639.5 2684 88.6645 589 3149 2 chr5D.!!$R1 2560
2 TraesCS5B01G296700 chr5A 505206083 505208076 1993 True 2444.0 2444 89.1790 589 2561 1 chr5A.!!$R2 1972
3 TraesCS5B01G296700 chr5A 505033913 505034471 558 True 514.0 514 83.6460 2576 3149 1 chr5A.!!$R1 573
4 TraesCS5B01G296700 chr5A 505289906 505290628 722 True 455.0 455 78.9130 86 832 1 chr5A.!!$R3 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 580 0.035152 CCAGAGTAGGCATGTTGGCA 60.035 55.0 3.81 0.0 46.46 4.92 F
1929 2014 0.827368 GGGACCTCGAGAAGCTCATT 59.173 55.0 15.71 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2179 0.680618 ACGGGTTGACGTAATCACCA 59.319 50.0 0.0 0.0 46.58 4.17 R
2874 4297 0.108804 AGACACGATGCCGACGAAAT 60.109 50.0 0.0 0.0 39.50 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.672961 TCGATCGTTGGCTCTGAATT 57.327 45.000 15.94 0.00 0.00 2.17
20 21 2.270923 TCGATCGTTGGCTCTGAATTG 58.729 47.619 15.94 0.00 0.00 2.32
21 22 1.267732 CGATCGTTGGCTCTGAATTGC 60.268 52.381 7.03 0.00 0.00 3.56
22 23 1.739466 GATCGTTGGCTCTGAATTGCA 59.261 47.619 0.00 0.00 0.00 4.08
23 24 0.874390 TCGTTGGCTCTGAATTGCAC 59.126 50.000 0.00 0.00 0.00 4.57
24 25 0.453282 CGTTGGCTCTGAATTGCACG 60.453 55.000 0.00 0.00 0.00 5.34
25 26 0.593128 GTTGGCTCTGAATTGCACGT 59.407 50.000 0.00 0.00 0.00 4.49
26 27 0.592637 TTGGCTCTGAATTGCACGTG 59.407 50.000 12.28 12.28 0.00 4.49
27 28 0.534877 TGGCTCTGAATTGCACGTGT 60.535 50.000 18.38 0.00 0.00 4.49
28 29 0.110056 GGCTCTGAATTGCACGTGTG 60.110 55.000 18.38 0.00 0.00 3.82
29 30 0.588252 GCTCTGAATTGCACGTGTGT 59.412 50.000 18.38 0.17 0.00 3.72
30 31 1.798223 GCTCTGAATTGCACGTGTGTA 59.202 47.619 18.38 3.04 0.00 2.90
31 32 2.416547 GCTCTGAATTGCACGTGTGTAT 59.583 45.455 18.38 5.43 0.00 2.29
32 33 3.725895 GCTCTGAATTGCACGTGTGTATG 60.726 47.826 18.38 2.40 0.00 2.39
33 34 2.741517 TCTGAATTGCACGTGTGTATGG 59.258 45.455 18.38 3.04 0.00 2.74
34 35 2.483877 CTGAATTGCACGTGTGTATGGT 59.516 45.455 18.38 0.00 0.00 3.55
35 36 2.881513 TGAATTGCACGTGTGTATGGTT 59.118 40.909 18.38 3.05 0.00 3.67
36 37 3.316588 TGAATTGCACGTGTGTATGGTTT 59.683 39.130 18.38 0.28 0.00 3.27
37 38 2.765108 TTGCACGTGTGTATGGTTTG 57.235 45.000 18.38 0.00 0.00 2.93
38 39 0.947960 TGCACGTGTGTATGGTTTGG 59.052 50.000 18.38 0.00 0.00 3.28
39 40 1.231221 GCACGTGTGTATGGTTTGGA 58.769 50.000 18.38 0.00 0.00 3.53
40 41 1.604755 GCACGTGTGTATGGTTTGGAA 59.395 47.619 18.38 0.00 0.00 3.53
41 42 2.227865 GCACGTGTGTATGGTTTGGAAT 59.772 45.455 18.38 0.00 0.00 3.01
42 43 3.669557 GCACGTGTGTATGGTTTGGAATC 60.670 47.826 18.38 0.00 0.00 2.52
43 44 3.751175 CACGTGTGTATGGTTTGGAATCT 59.249 43.478 7.58 0.00 0.00 2.40
44 45 3.751175 ACGTGTGTATGGTTTGGAATCTG 59.249 43.478 0.00 0.00 0.00 2.90
45 46 3.426159 CGTGTGTATGGTTTGGAATCTGC 60.426 47.826 0.00 0.00 0.00 4.26
46 47 3.088532 TGTGTATGGTTTGGAATCTGCC 58.911 45.455 0.00 0.00 0.00 4.85
47 48 3.245229 TGTGTATGGTTTGGAATCTGCCT 60.245 43.478 0.00 0.00 0.00 4.75
48 49 3.763897 GTGTATGGTTTGGAATCTGCCTT 59.236 43.478 0.00 0.00 0.00 4.35
49 50 3.763360 TGTATGGTTTGGAATCTGCCTTG 59.237 43.478 0.00 0.00 0.00 3.61
50 51 1.631405 TGGTTTGGAATCTGCCTTGG 58.369 50.000 0.00 0.00 0.00 3.61
51 52 1.133199 TGGTTTGGAATCTGCCTTGGT 60.133 47.619 0.00 0.00 0.00 3.67
52 53 1.546029 GGTTTGGAATCTGCCTTGGTC 59.454 52.381 0.00 0.00 0.00 4.02
53 54 1.546029 GTTTGGAATCTGCCTTGGTCC 59.454 52.381 0.00 0.00 0.00 4.46
54 55 0.039618 TTGGAATCTGCCTTGGTCCC 59.960 55.000 0.00 0.00 0.00 4.46
55 56 0.846427 TGGAATCTGCCTTGGTCCCT 60.846 55.000 0.00 0.00 0.00 4.20
56 57 0.106967 GGAATCTGCCTTGGTCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
57 58 0.106967 GAATCTGCCTTGGTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
58 59 1.575447 AATCTGCCTTGGTCCCTCCC 61.575 60.000 0.00 0.00 34.77 4.30
59 60 2.498820 ATCTGCCTTGGTCCCTCCCT 62.499 60.000 0.00 0.00 34.77 4.20
60 61 2.935481 TGCCTTGGTCCCTCCCTG 60.935 66.667 0.00 0.00 34.77 4.45
61 62 3.732849 GCCTTGGTCCCTCCCTGG 61.733 72.222 0.00 0.00 34.77 4.45
62 63 2.124996 CCTTGGTCCCTCCCTGGA 59.875 66.667 0.00 0.00 38.35 3.86
63 64 1.308216 CCTTGGTCCCTCCCTGGAT 60.308 63.158 0.00 0.00 36.63 3.41
64 65 1.639635 CCTTGGTCCCTCCCTGGATG 61.640 65.000 0.00 0.00 36.63 3.51
65 66 2.276309 CTTGGTCCCTCCCTGGATGC 62.276 65.000 0.00 0.00 36.63 3.91
66 67 2.367512 GGTCCCTCCCTGGATGCT 60.368 66.667 0.00 0.00 36.63 3.79
67 68 2.750657 GGTCCCTCCCTGGATGCTG 61.751 68.421 0.00 0.00 36.63 4.41
68 69 3.092511 TCCCTCCCTGGATGCTGC 61.093 66.667 0.00 0.00 38.35 5.25
69 70 3.414193 CCCTCCCTGGATGCTGCA 61.414 66.667 4.13 4.13 38.35 4.41
70 71 2.192443 CCTCCCTGGATGCTGCAG 59.808 66.667 10.11 10.11 38.35 4.41
75 76 4.728409 CTGGATGCTGCAGGAACA 57.272 55.556 13.45 13.64 31.71 3.18
76 77 2.177950 CTGGATGCTGCAGGAACAC 58.822 57.895 13.45 6.11 31.71 3.32
77 78 0.607217 CTGGATGCTGCAGGAACACA 60.607 55.000 13.45 10.65 31.71 3.72
78 79 0.178995 TGGATGCTGCAGGAACACAA 60.179 50.000 13.45 0.00 0.00 3.33
79 80 0.961019 GGATGCTGCAGGAACACAAA 59.039 50.000 13.45 0.00 0.00 2.83
80 81 1.336240 GGATGCTGCAGGAACACAAAC 60.336 52.381 13.45 1.64 0.00 2.93
81 82 1.337703 GATGCTGCAGGAACACAAACA 59.662 47.619 13.45 0.00 0.00 2.83
82 83 1.180907 TGCTGCAGGAACACAAACAA 58.819 45.000 17.12 0.00 0.00 2.83
83 84 1.755959 TGCTGCAGGAACACAAACAAT 59.244 42.857 17.12 0.00 0.00 2.71
84 85 2.168106 TGCTGCAGGAACACAAACAATT 59.832 40.909 17.12 0.00 0.00 2.32
85 86 2.540931 GCTGCAGGAACACAAACAATTG 59.459 45.455 17.12 3.24 42.46 2.32
86 87 3.737663 GCTGCAGGAACACAAACAATTGA 60.738 43.478 17.12 0.00 38.94 2.57
87 88 4.624015 CTGCAGGAACACAAACAATTGAT 58.376 39.130 13.59 0.00 38.94 2.57
88 89 4.619973 TGCAGGAACACAAACAATTGATC 58.380 39.130 13.59 0.00 38.94 2.92
89 90 4.099113 TGCAGGAACACAAACAATTGATCA 59.901 37.500 13.59 0.00 38.94 2.92
102 103 3.567478 ATTGATCAAGCCCTAGTGGAC 57.433 47.619 14.54 0.00 35.39 4.02
104 105 1.112113 GATCAAGCCCTAGTGGACGA 58.888 55.000 0.00 0.00 35.39 4.20
105 106 1.689273 GATCAAGCCCTAGTGGACGAT 59.311 52.381 0.00 0.55 35.39 3.73
106 107 0.824109 TCAAGCCCTAGTGGACGATG 59.176 55.000 0.00 0.51 35.39 3.84
107 108 0.179073 CAAGCCCTAGTGGACGATGG 60.179 60.000 0.00 0.00 35.39 3.51
108 109 0.617820 AAGCCCTAGTGGACGATGGT 60.618 55.000 0.00 0.00 35.39 3.55
109 110 1.144057 GCCCTAGTGGACGATGGTG 59.856 63.158 0.00 0.00 35.39 4.17
110 111 1.327690 GCCCTAGTGGACGATGGTGA 61.328 60.000 0.00 0.00 35.39 4.02
119 120 3.879295 GTGGACGATGGTGATGATGATTT 59.121 43.478 0.00 0.00 0.00 2.17
121 122 4.949238 TGGACGATGGTGATGATGATTTTT 59.051 37.500 0.00 0.00 0.00 1.94
122 123 5.066375 TGGACGATGGTGATGATGATTTTTC 59.934 40.000 0.00 0.00 0.00 2.29
126 127 4.780275 TGGTGATGATGATTTTTCGCAA 57.220 36.364 0.00 0.00 0.00 4.85
131 132 5.955496 GTGATGATGATTTTTCGCAATTTGC 59.045 36.000 11.42 11.42 40.69 3.68
137 138 5.450171 TGATTTTTCGCAATTTGCAATTGG 58.550 33.333 20.56 4.71 45.36 3.16
144 145 3.680937 CGCAATTTGCAATTGGTCTGAAT 59.319 39.130 20.56 0.00 45.36 2.57
148 149 5.895636 ATTTGCAATTGGTCTGAATCGTA 57.104 34.783 7.72 0.00 0.00 3.43
149 150 4.678509 TTGCAATTGGTCTGAATCGTAC 57.321 40.909 7.72 0.00 0.00 3.67
150 151 2.670905 TGCAATTGGTCTGAATCGTACG 59.329 45.455 9.53 9.53 0.00 3.67
151 152 2.671396 GCAATTGGTCTGAATCGTACGT 59.329 45.455 16.05 0.00 0.00 3.57
153 154 4.506654 GCAATTGGTCTGAATCGTACGTAT 59.493 41.667 16.05 5.15 0.00 3.06
156 157 3.943958 TGGTCTGAATCGTACGTATTCG 58.056 45.455 23.13 19.47 43.34 3.34
161 162 6.128715 GGTCTGAATCGTACGTATTCGATCTA 60.129 42.308 23.13 11.01 44.29 1.98
163 164 7.631750 GTCTGAATCGTACGTATTCGATCTATC 59.368 40.741 23.13 13.53 44.29 2.08
164 165 7.544915 TCTGAATCGTACGTATTCGATCTATCT 59.455 37.037 23.13 5.73 44.29 1.98
165 166 8.693542 TGAATCGTACGTATTCGATCTATCTA 57.306 34.615 23.13 9.58 44.29 1.98
168 169 7.733046 TCGTACGTATTCGATCTATCTACTC 57.267 40.000 16.05 0.00 40.62 2.59
169 170 6.467364 TCGTACGTATTCGATCTATCTACTCG 59.533 42.308 16.05 0.00 40.62 4.18
170 171 5.453281 ACGTATTCGATCTATCTACTCGC 57.547 43.478 0.00 0.00 40.62 5.03
206 207 1.580845 GCGAGCAAGAGCAACCATGT 61.581 55.000 0.00 0.00 45.49 3.21
207 208 0.445436 CGAGCAAGAGCAACCATGTC 59.555 55.000 0.00 0.00 45.49 3.06
208 209 0.807496 GAGCAAGAGCAACCATGTCC 59.193 55.000 0.00 0.00 45.49 4.02
209 210 0.111061 AGCAAGAGCAACCATGTCCA 59.889 50.000 0.00 0.00 45.49 4.02
210 211 1.180029 GCAAGAGCAACCATGTCCAT 58.820 50.000 0.00 0.00 41.58 3.41
211 212 1.135199 GCAAGAGCAACCATGTCCATG 60.135 52.381 0.14 0.14 41.58 3.66
212 213 2.165167 CAAGAGCAACCATGTCCATGT 58.835 47.619 6.53 0.00 37.11 3.21
227 228 1.399440 CCATGTGATGCGACAAGAAGG 59.601 52.381 0.00 0.00 0.00 3.46
253 254 6.498304 AGTCAATTGCTAAGTTTTGACACAG 58.502 36.000 16.02 0.00 46.51 3.66
254 255 5.173854 GTCAATTGCTAAGTTTTGACACAGC 59.826 40.000 10.96 0.00 44.56 4.40
255 256 5.067674 TCAATTGCTAAGTTTTGACACAGCT 59.932 36.000 0.00 0.00 0.00 4.24
256 257 6.262049 TCAATTGCTAAGTTTTGACACAGCTA 59.738 34.615 0.00 0.00 0.00 3.32
257 258 5.673337 TTGCTAAGTTTTGACACAGCTAG 57.327 39.130 0.00 0.00 0.00 3.42
287 288 5.041940 AGCTAACGATTCTTAAGCCTTACG 58.958 41.667 0.00 2.26 0.00 3.18
288 289 4.802563 GCTAACGATTCTTAAGCCTTACGT 59.197 41.667 0.00 0.00 0.00 3.57
289 290 5.973565 GCTAACGATTCTTAAGCCTTACGTA 59.026 40.000 0.00 0.00 32.66 3.57
290 291 6.075152 GCTAACGATTCTTAAGCCTTACGTAC 60.075 42.308 0.00 0.00 32.66 3.67
386 389 0.603707 CTGTCCTTGCCAAGCGAGAA 60.604 55.000 5.37 0.00 42.27 2.87
408 411 1.008995 CGGTGCCGTCCAAAACTTG 60.009 57.895 1.93 0.00 34.35 3.16
455 458 2.696707 CCATCCCATTACTTGCATTGCT 59.303 45.455 10.49 0.00 0.00 3.91
458 461 2.496871 TCCCATTACTTGCATTGCTTGG 59.503 45.455 10.49 7.14 0.00 3.61
460 463 1.921887 CATTACTTGCATTGCTTGGCG 59.078 47.619 10.49 0.00 0.00 5.69
461 464 0.958091 TTACTTGCATTGCTTGGCGT 59.042 45.000 10.49 2.73 0.00 5.68
464 467 1.545582 ACTTGCATTGCTTGGCGTAAT 59.454 42.857 10.49 0.00 0.00 1.89
466 469 3.192422 ACTTGCATTGCTTGGCGTAATTA 59.808 39.130 10.49 0.00 0.00 1.40
468 471 2.489722 TGCATTGCTTGGCGTAATTACA 59.510 40.909 15.67 0.00 0.00 2.41
475 478 3.554731 GCTTGGCGTAATTACAGAGTACC 59.445 47.826 15.67 7.02 0.00 3.34
476 479 3.806625 TGGCGTAATTACAGAGTACCC 57.193 47.619 15.67 5.59 0.00 3.69
478 481 2.224137 GGCGTAATTACAGAGTACCCCC 60.224 54.545 15.67 0.91 0.00 5.40
479 482 2.697229 GCGTAATTACAGAGTACCCCCT 59.303 50.000 15.67 0.00 0.00 4.79
484 487 6.238869 CGTAATTACAGAGTACCCCCTCTTAC 60.239 46.154 15.67 0.00 39.81 2.34
497 500 1.198637 CCTCTTACAAGCAGCAGCAAC 59.801 52.381 3.17 0.00 45.49 4.17
499 502 2.486982 CTCTTACAAGCAGCAGCAACAT 59.513 45.455 3.17 0.00 45.49 2.71
501 504 1.894881 TACAAGCAGCAGCAACATGA 58.105 45.000 3.17 0.00 45.49 3.07
502 505 1.034356 ACAAGCAGCAGCAACATGAA 58.966 45.000 3.17 0.00 45.49 2.57
505 508 2.867368 CAAGCAGCAGCAACATGAAAAA 59.133 40.909 3.17 0.00 45.49 1.94
506 509 2.750948 AGCAGCAGCAACATGAAAAAG 58.249 42.857 3.17 0.00 45.49 2.27
508 511 2.546373 GCAGCAGCAACATGAAAAAGGA 60.546 45.455 0.00 0.00 41.58 3.36
511 514 4.571580 CAGCAGCAACATGAAAAAGGAAAA 59.428 37.500 0.00 0.00 0.00 2.29
512 515 4.812626 AGCAGCAACATGAAAAAGGAAAAG 59.187 37.500 0.00 0.00 0.00 2.27
516 519 7.467675 GCAGCAACATGAAAAAGGAAAAGAAAT 60.468 33.333 0.00 0.00 0.00 2.17
517 520 7.853929 CAGCAACATGAAAAAGGAAAAGAAATG 59.146 33.333 0.00 0.00 0.00 2.32
518 521 7.553760 AGCAACATGAAAAAGGAAAAGAAATGT 59.446 29.630 0.00 0.00 0.00 2.71
519 522 8.825745 GCAACATGAAAAAGGAAAAGAAATGTA 58.174 29.630 0.00 0.00 0.00 2.29
526 529 9.894783 GAAAAAGGAAAAGAAATGTAGTACTCC 57.105 33.333 0.00 0.00 0.00 3.85
527 530 7.997773 AAAGGAAAAGAAATGTAGTACTCCC 57.002 36.000 0.00 0.00 0.00 4.30
528 531 6.954352 AGGAAAAGAAATGTAGTACTCCCT 57.046 37.500 0.00 0.00 0.00 4.20
529 532 6.948589 AGGAAAAGAAATGTAGTACTCCCTC 58.051 40.000 0.00 0.00 0.00 4.30
530 533 6.070136 AGGAAAAGAAATGTAGTACTCCCTCC 60.070 42.308 0.00 0.00 0.00 4.30
531 534 6.296259 GGAAAAGAAATGTAGTACTCCCTCCA 60.296 42.308 0.00 0.00 0.00 3.86
532 535 6.893020 AAAGAAATGTAGTACTCCCTCCAT 57.107 37.500 0.00 0.00 0.00 3.41
533 536 6.487299 AAGAAATGTAGTACTCCCTCCATC 57.513 41.667 0.00 0.00 0.00 3.51
535 538 2.769602 TGTAGTACTCCCTCCATCCC 57.230 55.000 0.00 0.00 0.00 3.85
536 539 1.934480 TGTAGTACTCCCTCCATCCCA 59.066 52.381 0.00 0.00 0.00 4.37
538 541 1.319947 AGTACTCCCTCCATCCCAGA 58.680 55.000 0.00 0.00 0.00 3.86
539 542 1.651770 AGTACTCCCTCCATCCCAGAA 59.348 52.381 0.00 0.00 0.00 3.02
540 543 2.251338 AGTACTCCCTCCATCCCAGAAT 59.749 50.000 0.00 0.00 0.00 2.40
541 544 3.471306 AGTACTCCCTCCATCCCAGAATA 59.529 47.826 0.00 0.00 0.00 1.75
542 545 3.663298 ACTCCCTCCATCCCAGAATAT 57.337 47.619 0.00 0.00 0.00 1.28
543 546 3.254960 ACTCCCTCCATCCCAGAATATG 58.745 50.000 0.00 0.00 0.00 1.78
544 547 3.116199 ACTCCCTCCATCCCAGAATATGA 60.116 47.826 0.00 0.00 0.00 2.15
545 548 3.251484 TCCCTCCATCCCAGAATATGAC 58.749 50.000 0.00 0.00 0.00 3.06
546 549 2.981784 CCCTCCATCCCAGAATATGACA 59.018 50.000 0.00 0.00 0.00 3.58
547 550 3.590630 CCCTCCATCCCAGAATATGACAT 59.409 47.826 0.00 0.00 0.00 3.06
549 552 4.042560 CCTCCATCCCAGAATATGACATGT 59.957 45.833 0.00 0.00 0.00 3.21
551 554 6.239973 CCTCCATCCCAGAATATGACATGTTA 60.240 42.308 0.00 0.00 0.00 2.41
552 555 7.333779 TCCATCCCAGAATATGACATGTTAT 57.666 36.000 8.32 8.32 0.00 1.89
553 556 7.758609 TCCATCCCAGAATATGACATGTTATT 58.241 34.615 8.57 5.50 0.00 1.40
554 557 8.889445 TCCATCCCAGAATATGACATGTTATTA 58.111 33.333 8.57 0.00 0.00 0.98
555 558 8.950210 CCATCCCAGAATATGACATGTTATTAC 58.050 37.037 8.57 1.61 0.00 1.89
556 559 9.506018 CATCCCAGAATATGACATGTTATTACA 57.494 33.333 8.57 0.00 38.95 2.41
558 561 9.337396 TCCCAGAATATGACATGTTATTACAAC 57.663 33.333 8.57 0.00 37.91 3.32
559 562 8.567948 CCCAGAATATGACATGTTATTACAACC 58.432 37.037 8.57 0.00 37.91 3.77
560 563 9.119418 CCAGAATATGACATGTTATTACAACCA 57.881 33.333 8.57 0.00 37.91 3.67
564 567 9.905713 AATATGACATGTTATTACAACCAGAGT 57.094 29.630 8.57 0.00 37.91 3.24
575 578 2.086869 CAACCAGAGTAGGCATGTTGG 58.913 52.381 0.00 0.00 31.77 3.77
577 580 0.035152 CCAGAGTAGGCATGTTGGCA 60.035 55.000 3.81 0.00 46.46 4.92
587 590 1.736364 GCATGTTGGCAATGAATCGCA 60.736 47.619 1.92 0.00 0.00 5.10
614 617 7.466320 GCTTGACTTGACTTGCAATTGAAAAAT 60.466 33.333 10.34 0.00 35.59 1.82
615 618 7.236674 TGACTTGACTTGCAATTGAAAAATG 57.763 32.000 10.34 0.00 35.59 2.32
616 619 7.040494 TGACTTGACTTGCAATTGAAAAATGA 58.960 30.769 10.34 0.00 35.59 2.57
617 620 7.711772 TGACTTGACTTGCAATTGAAAAATGAT 59.288 29.630 10.34 0.00 35.59 2.45
618 621 8.080083 ACTTGACTTGCAATTGAAAAATGATC 57.920 30.769 10.34 0.00 35.59 2.92
619 622 6.693761 TGACTTGCAATTGAAAAATGATCG 57.306 33.333 10.34 0.00 0.00 3.69
620 623 5.634439 TGACTTGCAATTGAAAAATGATCGG 59.366 36.000 10.34 0.00 0.00 4.18
621 624 4.931002 ACTTGCAATTGAAAAATGATCGGG 59.069 37.500 10.34 0.00 0.00 5.14
640 643 1.882912 GATACAGCATGCATCCCGAA 58.117 50.000 21.98 0.00 42.53 4.30
641 644 2.221169 GATACAGCATGCATCCCGAAA 58.779 47.619 21.98 0.00 42.53 3.46
642 645 1.667236 TACAGCATGCATCCCGAAAG 58.333 50.000 21.98 0.36 42.53 2.62
665 668 4.109050 GTTCGCTCACTCCAGAATTAGAG 58.891 47.826 0.00 0.00 36.16 2.43
667 670 4.017126 TCGCTCACTCCAGAATTAGAGAA 58.983 43.478 6.62 0.00 34.13 2.87
707 726 3.615509 GACCGTCGCCCATTTCCCA 62.616 63.158 0.00 0.00 0.00 4.37
776 803 1.900016 CCATGCCATGATCCCACCG 60.900 63.158 6.18 0.00 0.00 4.94
787 819 3.797353 CCCACCGCCATAGTGCCT 61.797 66.667 0.00 0.00 33.75 4.75
789 821 2.586079 CACCGCCATAGTGCCTCG 60.586 66.667 0.00 0.00 0.00 4.63
889 940 4.103357 GACGCATATATCCGTCCATACAC 58.897 47.826 16.80 0.00 45.81 2.90
913 967 2.550606 GAGCTCTGTCCTATCCTACGTG 59.449 54.545 6.43 0.00 0.00 4.49
920 993 4.274700 TATCCTACGTGCGCGGGC 62.275 66.667 25.20 18.81 43.45 6.13
1497 1579 4.176851 GGCGACGAGGACGAGGAC 62.177 72.222 0.00 0.00 42.66 3.85
1656 1738 1.372004 CTTCGACGTGTACGGCCAA 60.372 57.895 2.24 0.00 46.52 4.52
1659 1741 1.209898 CGACGTGTACGGCCAAGTA 59.790 57.895 2.24 0.00 46.52 2.24
1821 1906 2.573869 GAGCAGAGCGCACTGGTA 59.426 61.111 33.70 0.00 46.38 3.25
1929 2014 0.827368 GGGACCTCGAGAAGCTCATT 59.173 55.000 15.71 0.00 0.00 2.57
1978 2063 1.228657 GGTGGAGCAGGACAACGAAC 61.229 60.000 0.00 0.00 0.00 3.95
2036 2121 4.430765 GTCGACGACGGTGGCCAT 62.431 66.667 9.72 0.00 40.21 4.40
2091 2176 1.002624 CGGACTTAGGCAAGGGCAA 60.003 57.895 0.00 0.00 43.71 4.52
2094 2179 2.179427 GGACTTAGGCAAGGGCAATTT 58.821 47.619 0.00 0.00 43.71 1.82
2223 2312 8.498054 TTCAGAGGACAGATTATTCACATTTC 57.502 34.615 0.00 0.00 0.00 2.17
2265 2354 1.461127 CGAAAGCTAAGCAGTGGTGAC 59.539 52.381 0.00 0.00 0.00 3.67
2306 2395 7.254319 GCAAATAGGTCAATCATGAAGCAATTG 60.254 37.037 0.00 0.00 37.30 2.32
2322 2411 4.821260 AGCAATTGTTGTGAGTACATGTGA 59.179 37.500 9.11 0.00 36.53 3.58
2425 2514 8.554835 TCTATGTATCAACGGTTTGAAAATGA 57.445 30.769 0.00 0.00 45.01 2.57
2524 2613 4.778415 CCGGTCCGAGTCAGCACG 62.778 72.222 14.39 0.00 0.00 5.34
2526 2615 4.357947 GGTCCGAGTCAGCACGCA 62.358 66.667 0.00 0.00 0.00 5.24
2531 2622 3.418068 GAGTCAGCACGCAGGCAC 61.418 66.667 0.00 0.00 35.83 5.01
2556 2648 4.648626 TGGCTGCTGTGGCACCTC 62.649 66.667 16.26 7.22 44.28 3.85
2561 2653 0.892358 CTGCTGTGGCACCTCACAAT 60.892 55.000 16.26 0.00 45.60 2.71
2562 2654 0.890542 TGCTGTGGCACCTCACAATC 60.891 55.000 16.26 0.00 45.60 2.67
2563 2655 0.890542 GCTGTGGCACCTCACAATCA 60.891 55.000 16.26 0.00 45.60 2.57
2564 2656 0.877071 CTGTGGCACCTCACAATCAC 59.123 55.000 16.26 0.00 45.60 3.06
2565 2657 0.537143 TGTGGCACCTCACAATCACC 60.537 55.000 16.26 0.00 43.70 4.02
2567 2659 1.380302 GGCACCTCACAATCACCCT 59.620 57.895 0.00 0.00 0.00 4.34
2569 2661 1.620822 GCACCTCACAATCACCCTTT 58.379 50.000 0.00 0.00 0.00 3.11
2571 2663 2.749621 GCACCTCACAATCACCCTTTAG 59.250 50.000 0.00 0.00 0.00 1.85
2572 2664 3.347216 CACCTCACAATCACCCTTTAGG 58.653 50.000 0.00 0.00 43.78 2.69
2602 4012 3.861113 TGTTACGTCTCTTTGTGTGTGTC 59.139 43.478 0.00 0.00 0.00 3.67
2633 4043 1.536907 TTCTACGCCCACCCCAAGA 60.537 57.895 0.00 0.00 0.00 3.02
2645 4055 2.558795 CACCCCAAGATCTATCGTCGAT 59.441 50.000 13.16 13.16 0.00 3.59
2687 4097 2.847715 CCCTACCCGGATCACCCC 60.848 72.222 0.73 0.00 33.16 4.95
2714 4136 1.004560 CATCGCTGCCCCGATACAT 60.005 57.895 8.07 0.00 45.35 2.29
2726 4148 3.564571 CCCCGATACATCCTAGTCCATCT 60.565 52.174 0.00 0.00 0.00 2.90
2737 4159 1.885049 AGTCCATCTGCCATACACCT 58.115 50.000 0.00 0.00 0.00 4.00
2765 4187 4.566360 CACCACAAGTTTGACAAAATGTCC 59.434 41.667 14.49 0.00 46.40 4.02
2798 4221 5.793026 TTGACCTTTTTGTTGCACATTTC 57.207 34.783 0.00 0.00 0.00 2.17
2808 4231 3.745975 TGTTGCACATTTCTTAGGAGACG 59.254 43.478 0.00 0.00 0.00 4.18
2838 4261 4.821805 AGTCGTTGGATGATGAGTTTGTTT 59.178 37.500 0.00 0.00 0.00 2.83
2882 4305 4.928661 AATGGAGTTCTTCATTTCGTCG 57.071 40.909 0.89 0.00 30.27 5.12
2883 4306 2.683968 TGGAGTTCTTCATTTCGTCGG 58.316 47.619 0.00 0.00 0.00 4.79
2893 4316 0.108804 ATTTCGTCGGCATCGTGTCT 60.109 50.000 0.00 0.00 37.69 3.41
2902 4325 1.473965 GGCATCGTGTCTGATGATGGT 60.474 52.381 7.86 0.00 46.98 3.55
2909 4332 3.119495 CGTGTCTGATGATGGTGACTACA 60.119 47.826 0.00 0.00 0.00 2.74
2913 4336 6.036517 GTGTCTGATGATGGTGACTACAATTC 59.963 42.308 0.00 0.00 0.00 2.17
2915 4338 4.441792 TGATGATGGTGACTACAATTCGG 58.558 43.478 0.00 0.00 0.00 4.30
2917 4340 3.595173 TGATGGTGACTACAATTCGGTG 58.405 45.455 0.00 0.00 0.00 4.94
2918 4341 3.259625 TGATGGTGACTACAATTCGGTGA 59.740 43.478 0.00 0.00 0.00 4.02
2919 4342 3.973206 TGGTGACTACAATTCGGTGAT 57.027 42.857 0.00 0.00 0.00 3.06
2920 4343 3.595173 TGGTGACTACAATTCGGTGATG 58.405 45.455 0.00 0.00 0.00 3.07
2921 4344 3.259625 TGGTGACTACAATTCGGTGATGA 59.740 43.478 0.00 0.00 0.00 2.92
2922 4345 4.081142 TGGTGACTACAATTCGGTGATGAT 60.081 41.667 0.00 0.00 0.00 2.45
2923 4346 4.271049 GGTGACTACAATTCGGTGATGATG 59.729 45.833 0.00 0.00 0.00 3.07
2924 4347 5.109210 GTGACTACAATTCGGTGATGATGA 58.891 41.667 0.00 0.00 0.00 2.92
2925 4348 5.755375 GTGACTACAATTCGGTGATGATGAT 59.245 40.000 0.00 0.00 0.00 2.45
2926 4349 5.754890 TGACTACAATTCGGTGATGATGATG 59.245 40.000 0.00 0.00 0.00 3.07
2927 4350 5.917462 ACTACAATTCGGTGATGATGATGA 58.083 37.500 0.00 0.00 0.00 2.92
2928 4351 6.528321 ACTACAATTCGGTGATGATGATGAT 58.472 36.000 0.00 0.00 0.00 2.45
2929 4352 5.684550 ACAATTCGGTGATGATGATGATG 57.315 39.130 0.00 0.00 0.00 3.07
2930 4353 5.370679 ACAATTCGGTGATGATGATGATGA 58.629 37.500 0.00 0.00 0.00 2.92
2931 4354 6.002082 ACAATTCGGTGATGATGATGATGAT 58.998 36.000 0.00 0.00 0.00 2.45
2932 4355 6.072673 ACAATTCGGTGATGATGATGATGATG 60.073 38.462 0.00 0.00 0.00 3.07
2933 4356 4.877378 TCGGTGATGATGATGATGATGA 57.123 40.909 0.00 0.00 0.00 2.92
2934 4357 5.416271 TCGGTGATGATGATGATGATGAT 57.584 39.130 0.00 0.00 0.00 2.45
2935 4358 5.175859 TCGGTGATGATGATGATGATGATG 58.824 41.667 0.00 0.00 0.00 3.07
2936 4359 5.046878 TCGGTGATGATGATGATGATGATGA 60.047 40.000 0.00 0.00 0.00 2.92
2937 4360 5.817816 CGGTGATGATGATGATGATGATGAT 59.182 40.000 0.00 0.00 0.00 2.45
2938 4361 6.238211 CGGTGATGATGATGATGATGATGATG 60.238 42.308 0.00 0.00 0.00 3.07
2943 4366 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
2972 4395 1.945387 GATGAGCATCCTCGAAGCAA 58.055 50.000 0.00 0.00 41.13 3.91
2978 4401 1.745141 GCATCCTCGAAGCAATGGAGT 60.745 52.381 0.00 0.00 32.37 3.85
2998 4421 6.603997 TGGAGTAGGAAGAGAAGTATGTTCTC 59.396 42.308 10.33 10.33 43.89 2.87
3073 4496 9.920946 ATAAAGGGTCATATTGATGTTTACAGT 57.079 29.630 0.00 0.00 34.41 3.55
3116 4539 6.234177 CCAGTATATCATGAGGGGTTCTTTC 58.766 44.000 0.09 0.00 0.00 2.62
3134 4557 1.434696 CGGCGTAACTACCGGATGT 59.565 57.895 9.46 2.78 45.74 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.270923 CAATTCAGAGCCAACGATCGA 58.729 47.619 24.34 0.00 0.00 3.59
1 2 1.267732 GCAATTCAGAGCCAACGATCG 60.268 52.381 14.88 14.88 0.00 3.69
2 3 1.739466 TGCAATTCAGAGCCAACGATC 59.261 47.619 0.00 0.00 0.00 3.69
3 4 1.470098 GTGCAATTCAGAGCCAACGAT 59.530 47.619 0.00 0.00 0.00 3.73
4 5 0.874390 GTGCAATTCAGAGCCAACGA 59.126 50.000 0.00 0.00 0.00 3.85
5 6 0.453282 CGTGCAATTCAGAGCCAACG 60.453 55.000 0.00 0.00 0.00 4.10
6 7 0.593128 ACGTGCAATTCAGAGCCAAC 59.407 50.000 0.00 0.00 0.00 3.77
7 8 0.592637 CACGTGCAATTCAGAGCCAA 59.407 50.000 0.82 0.00 0.00 4.52
8 9 0.534877 ACACGTGCAATTCAGAGCCA 60.535 50.000 17.22 0.00 0.00 4.75
9 10 0.110056 CACACGTGCAATTCAGAGCC 60.110 55.000 17.22 0.00 0.00 4.70
10 11 0.588252 ACACACGTGCAATTCAGAGC 59.412 50.000 17.22 0.00 0.00 4.09
11 12 3.181517 CCATACACACGTGCAATTCAGAG 60.182 47.826 17.22 0.00 0.00 3.35
12 13 2.741517 CCATACACACGTGCAATTCAGA 59.258 45.455 17.22 0.00 0.00 3.27
13 14 2.483877 ACCATACACACGTGCAATTCAG 59.516 45.455 17.22 1.79 0.00 3.02
14 15 2.499197 ACCATACACACGTGCAATTCA 58.501 42.857 17.22 0.00 0.00 2.57
15 16 3.552604 AACCATACACACGTGCAATTC 57.447 42.857 17.22 0.00 0.00 2.17
16 17 3.551863 CCAAACCATACACACGTGCAATT 60.552 43.478 17.22 0.00 0.00 2.32
17 18 2.030363 CCAAACCATACACACGTGCAAT 60.030 45.455 17.22 3.58 0.00 3.56
18 19 1.335182 CCAAACCATACACACGTGCAA 59.665 47.619 17.22 0.82 0.00 4.08
19 20 0.947960 CCAAACCATACACACGTGCA 59.052 50.000 17.22 0.82 0.00 4.57
20 21 1.231221 TCCAAACCATACACACGTGC 58.769 50.000 17.22 0.00 0.00 5.34
21 22 3.751175 AGATTCCAAACCATACACACGTG 59.249 43.478 15.48 15.48 0.00 4.49
22 23 3.751175 CAGATTCCAAACCATACACACGT 59.249 43.478 0.00 0.00 0.00 4.49
23 24 3.426159 GCAGATTCCAAACCATACACACG 60.426 47.826 0.00 0.00 0.00 4.49
24 25 3.119495 GGCAGATTCCAAACCATACACAC 60.119 47.826 0.00 0.00 0.00 3.82
25 26 3.088532 GGCAGATTCCAAACCATACACA 58.911 45.455 0.00 0.00 0.00 3.72
26 27 3.356290 AGGCAGATTCCAAACCATACAC 58.644 45.455 0.00 0.00 0.00 2.90
27 28 3.737559 AGGCAGATTCCAAACCATACA 57.262 42.857 0.00 0.00 0.00 2.29
28 29 3.131046 CCAAGGCAGATTCCAAACCATAC 59.869 47.826 0.00 0.00 0.00 2.39
29 30 3.245586 ACCAAGGCAGATTCCAAACCATA 60.246 43.478 0.00 0.00 0.00 2.74
30 31 2.181975 CCAAGGCAGATTCCAAACCAT 58.818 47.619 0.00 0.00 0.00 3.55
31 32 1.133199 ACCAAGGCAGATTCCAAACCA 60.133 47.619 0.00 0.00 0.00 3.67
32 33 1.546029 GACCAAGGCAGATTCCAAACC 59.454 52.381 0.00 0.00 0.00 3.27
33 34 1.546029 GGACCAAGGCAGATTCCAAAC 59.454 52.381 0.00 0.00 0.00 2.93
34 35 1.549950 GGGACCAAGGCAGATTCCAAA 60.550 52.381 0.00 0.00 0.00 3.28
35 36 0.039618 GGGACCAAGGCAGATTCCAA 59.960 55.000 0.00 0.00 0.00 3.53
36 37 0.846427 AGGGACCAAGGCAGATTCCA 60.846 55.000 0.00 0.00 0.00 3.53
37 38 0.106967 GAGGGACCAAGGCAGATTCC 60.107 60.000 0.00 0.00 0.00 3.01
38 39 0.106967 GGAGGGACCAAGGCAGATTC 60.107 60.000 0.00 0.00 38.79 2.52
39 40 1.575447 GGGAGGGACCAAGGCAGATT 61.575 60.000 0.00 0.00 41.20 2.40
40 41 2.003548 GGGAGGGACCAAGGCAGAT 61.004 63.158 0.00 0.00 41.20 2.90
41 42 2.610859 GGGAGGGACCAAGGCAGA 60.611 66.667 0.00 0.00 41.20 4.26
42 43 2.612115 AGGGAGGGACCAAGGCAG 60.612 66.667 0.00 0.00 41.20 4.85
43 44 2.935481 CAGGGAGGGACCAAGGCA 60.935 66.667 0.00 0.00 41.20 4.75
44 45 3.732849 CCAGGGAGGGACCAAGGC 61.733 72.222 0.00 0.00 41.20 4.35
45 46 1.308216 ATCCAGGGAGGGACCAAGG 60.308 63.158 0.00 0.00 40.44 3.61
46 47 1.918253 CATCCAGGGAGGGACCAAG 59.082 63.158 0.00 0.00 40.44 3.61
47 48 2.308722 GCATCCAGGGAGGGACCAA 61.309 63.158 1.81 0.00 40.44 3.67
48 49 2.692368 GCATCCAGGGAGGGACCA 60.692 66.667 1.81 0.00 40.44 4.02
49 50 2.367512 AGCATCCAGGGAGGGACC 60.368 66.667 1.81 0.00 40.44 4.46
50 51 2.914289 CAGCATCCAGGGAGGGAC 59.086 66.667 1.81 0.00 40.44 4.46
51 52 3.092511 GCAGCATCCAGGGAGGGA 61.093 66.667 1.81 0.00 42.21 4.20
52 53 3.414193 TGCAGCATCCAGGGAGGG 61.414 66.667 1.81 0.00 38.24 4.30
53 54 2.192443 CTGCAGCATCCAGGGAGG 59.808 66.667 0.00 0.00 39.47 4.30
54 55 2.192443 CCTGCAGCATCCAGGGAG 59.808 66.667 8.66 0.00 44.87 4.30
58 59 0.607217 TGTGTTCCTGCAGCATCCAG 60.607 55.000 8.66 0.00 0.00 3.86
59 60 0.178995 TTGTGTTCCTGCAGCATCCA 60.179 50.000 8.66 0.00 0.00 3.41
60 61 0.961019 TTTGTGTTCCTGCAGCATCC 59.039 50.000 8.66 0.00 0.00 3.51
61 62 1.337703 TGTTTGTGTTCCTGCAGCATC 59.662 47.619 8.66 0.00 0.00 3.91
62 63 1.401761 TGTTTGTGTTCCTGCAGCAT 58.598 45.000 8.66 0.00 0.00 3.79
63 64 1.180907 TTGTTTGTGTTCCTGCAGCA 58.819 45.000 8.66 0.00 0.00 4.41
64 65 2.514205 ATTGTTTGTGTTCCTGCAGC 57.486 45.000 8.66 0.00 0.00 5.25
65 66 4.044336 TCAATTGTTTGTGTTCCTGCAG 57.956 40.909 6.78 6.78 34.32 4.41
66 67 4.099113 TGATCAATTGTTTGTGTTCCTGCA 59.901 37.500 5.13 0.00 34.32 4.41
67 68 4.619973 TGATCAATTGTTTGTGTTCCTGC 58.380 39.130 5.13 0.00 34.32 4.85
68 69 5.176223 GCTTGATCAATTGTTTGTGTTCCTG 59.824 40.000 8.96 0.00 34.32 3.86
69 70 5.291971 GCTTGATCAATTGTTTGTGTTCCT 58.708 37.500 8.96 0.00 34.32 3.36
70 71 4.448732 GGCTTGATCAATTGTTTGTGTTCC 59.551 41.667 8.96 0.00 34.32 3.62
71 72 4.448732 GGGCTTGATCAATTGTTTGTGTTC 59.551 41.667 8.96 0.00 34.32 3.18
72 73 4.101430 AGGGCTTGATCAATTGTTTGTGTT 59.899 37.500 8.96 0.00 34.32 3.32
73 74 3.642848 AGGGCTTGATCAATTGTTTGTGT 59.357 39.130 8.96 0.00 34.32 3.72
74 75 4.261578 AGGGCTTGATCAATTGTTTGTG 57.738 40.909 8.96 0.00 34.32 3.33
75 76 5.047802 CACTAGGGCTTGATCAATTGTTTGT 60.048 40.000 8.96 2.39 34.32 2.83
76 77 5.404946 CACTAGGGCTTGATCAATTGTTTG 58.595 41.667 8.96 0.00 0.00 2.93
77 78 4.463891 CCACTAGGGCTTGATCAATTGTTT 59.536 41.667 8.96 0.00 0.00 2.83
78 79 4.019174 CCACTAGGGCTTGATCAATTGTT 58.981 43.478 8.96 0.00 0.00 2.83
79 80 3.266772 TCCACTAGGGCTTGATCAATTGT 59.733 43.478 8.96 0.00 36.21 2.71
80 81 3.629398 GTCCACTAGGGCTTGATCAATTG 59.371 47.826 8.96 0.00 36.28 2.32
81 82 3.682718 CGTCCACTAGGGCTTGATCAATT 60.683 47.826 8.96 0.00 37.38 2.32
82 83 2.158900 CGTCCACTAGGGCTTGATCAAT 60.159 50.000 8.96 0.00 37.38 2.57
83 84 1.207089 CGTCCACTAGGGCTTGATCAA 59.793 52.381 8.12 8.12 37.38 2.57
84 85 0.824109 CGTCCACTAGGGCTTGATCA 59.176 55.000 0.00 0.00 37.38 2.92
85 86 1.112113 TCGTCCACTAGGGCTTGATC 58.888 55.000 0.00 0.00 37.38 2.92
86 87 1.414181 CATCGTCCACTAGGGCTTGAT 59.586 52.381 0.00 0.00 37.38 2.57
87 88 0.824109 CATCGTCCACTAGGGCTTGA 59.176 55.000 0.00 0.00 37.38 3.02
88 89 0.179073 CCATCGTCCACTAGGGCTTG 60.179 60.000 0.00 0.00 37.38 4.01
89 90 0.617820 ACCATCGTCCACTAGGGCTT 60.618 55.000 0.00 0.00 37.38 4.35
102 103 3.970610 GCGAAAAATCATCATCACCATCG 59.029 43.478 0.00 0.00 0.00 3.84
104 105 4.987408 TGCGAAAAATCATCATCACCAT 57.013 36.364 0.00 0.00 0.00 3.55
105 106 4.780275 TTGCGAAAAATCATCATCACCA 57.220 36.364 0.00 0.00 0.00 4.17
106 107 6.471839 CAAATTGCGAAAAATCATCATCACC 58.528 36.000 0.00 0.00 0.00 4.02
107 108 5.955496 GCAAATTGCGAAAAATCATCATCAC 59.045 36.000 0.90 0.00 31.71 3.06
108 109 6.097156 GCAAATTGCGAAAAATCATCATCA 57.903 33.333 0.90 0.00 31.71 3.07
126 127 4.789012 ACGATTCAGACCAATTGCAAAT 57.211 36.364 1.71 0.00 0.00 2.32
131 132 6.559703 CGAATACGTACGATTCAGACCAATTG 60.560 42.308 24.41 0.00 33.66 2.32
137 138 5.677936 AGATCGAATACGTACGATTCAGAC 58.322 41.667 24.41 16.49 46.71 3.51
144 145 6.467364 CGAGTAGATAGATCGAATACGTACGA 59.533 42.308 24.41 10.24 42.49 3.43
148 149 4.329528 GGCGAGTAGATAGATCGAATACGT 59.670 45.833 0.00 0.00 38.72 3.57
149 150 4.329256 TGGCGAGTAGATAGATCGAATACG 59.671 45.833 0.00 0.00 38.72 3.06
150 151 5.447548 GGTGGCGAGTAGATAGATCGAATAC 60.448 48.000 0.00 0.00 38.72 1.89
151 152 4.634883 GGTGGCGAGTAGATAGATCGAATA 59.365 45.833 0.00 0.00 38.72 1.75
153 154 2.812591 GGTGGCGAGTAGATAGATCGAA 59.187 50.000 0.00 0.00 38.72 3.71
156 157 1.469308 CCGGTGGCGAGTAGATAGATC 59.531 57.143 0.00 0.00 0.00 2.75
206 207 2.349590 CTTCTTGTCGCATCACATGGA 58.650 47.619 0.00 0.00 0.00 3.41
207 208 1.399440 CCTTCTTGTCGCATCACATGG 59.601 52.381 0.00 0.00 0.00 3.66
208 209 2.349590 TCCTTCTTGTCGCATCACATG 58.650 47.619 0.00 0.00 0.00 3.21
209 210 2.768253 TCCTTCTTGTCGCATCACAT 57.232 45.000 0.00 0.00 0.00 3.21
210 211 2.224281 ACTTCCTTCTTGTCGCATCACA 60.224 45.455 0.00 0.00 0.00 3.58
211 212 2.413453 GACTTCCTTCTTGTCGCATCAC 59.587 50.000 0.00 0.00 0.00 3.06
212 213 2.037121 TGACTTCCTTCTTGTCGCATCA 59.963 45.455 0.00 0.00 33.81 3.07
269 270 5.314923 TGTACGTAAGGCTTAAGAATCGT 57.685 39.130 23.88 21.36 46.39 3.73
366 368 2.669569 TCGCTTGGCAAGGACAGC 60.670 61.111 27.25 13.40 0.00 4.40
372 374 1.493311 GTCGTTCTCGCTTGGCAAG 59.507 57.895 22.75 22.75 36.96 4.01
373 375 2.307309 CGTCGTTCTCGCTTGGCAA 61.307 57.895 0.00 0.00 36.96 4.52
378 380 2.733593 GCACCGTCGTTCTCGCTT 60.734 61.111 0.00 0.00 36.96 4.68
402 405 1.472552 GCCCGCTTCCAAAACAAGTTT 60.473 47.619 0.00 0.00 0.00 2.66
408 411 1.506718 GCTAGCCCGCTTCCAAAAC 59.493 57.895 2.29 0.00 0.00 2.43
429 432 3.364549 TGCAAGTAATGGGATGGAAAGG 58.635 45.455 0.00 0.00 0.00 3.11
436 439 3.133362 CCAAGCAATGCAAGTAATGGGAT 59.867 43.478 8.35 0.00 0.00 3.85
455 458 3.118665 GGGGTACTCTGTAATTACGCCAA 60.119 47.826 10.92 0.00 44.39 4.52
458 461 2.697229 AGGGGGTACTCTGTAATTACGC 59.303 50.000 10.92 0.00 0.00 4.42
460 463 6.608808 TGTAAGAGGGGGTACTCTGTAATTAC 59.391 42.308 8.75 8.75 46.70 1.89
461 464 6.744822 TGTAAGAGGGGGTACTCTGTAATTA 58.255 40.000 0.00 0.00 46.70 1.40
464 467 4.680278 TGTAAGAGGGGGTACTCTGTAA 57.320 45.455 0.00 0.00 46.70 2.41
466 469 3.442076 CTTGTAAGAGGGGGTACTCTGT 58.558 50.000 0.00 0.00 46.70 3.41
475 478 1.028868 GCTGCTGCTTGTAAGAGGGG 61.029 60.000 8.53 0.00 36.03 4.79
476 479 0.321919 TGCTGCTGCTTGTAAGAGGG 60.322 55.000 17.00 0.00 40.48 4.30
478 481 1.875514 TGTTGCTGCTGCTTGTAAGAG 59.124 47.619 17.00 0.00 40.48 2.85
479 482 1.965935 TGTTGCTGCTGCTTGTAAGA 58.034 45.000 17.00 0.00 40.48 2.10
484 487 2.143008 TTTCATGTTGCTGCTGCTTG 57.857 45.000 17.00 9.09 40.48 4.01
501 504 8.857098 GGGAGTACTACATTTCTTTTCCTTTTT 58.143 33.333 7.57 0.00 0.00 1.94
502 505 8.225416 AGGGAGTACTACATTTCTTTTCCTTTT 58.775 33.333 7.57 0.00 0.00 2.27
505 508 6.070136 GGAGGGAGTACTACATTTCTTTTCCT 60.070 42.308 7.57 0.00 0.00 3.36
506 509 6.114089 GGAGGGAGTACTACATTTCTTTTCC 58.886 44.000 7.57 0.00 0.00 3.13
508 511 6.697641 TGGAGGGAGTACTACATTTCTTTT 57.302 37.500 7.57 0.00 0.00 2.27
511 514 4.902448 GGATGGAGGGAGTACTACATTTCT 59.098 45.833 7.57 0.00 42.05 2.52
512 515 4.040584 GGGATGGAGGGAGTACTACATTTC 59.959 50.000 7.57 1.29 42.05 2.17
516 519 1.934480 TGGGATGGAGGGAGTACTACA 59.066 52.381 7.57 0.00 35.37 2.74
517 520 2.177233 TCTGGGATGGAGGGAGTACTAC 59.823 54.545 0.00 0.00 0.00 2.73
518 521 2.510330 TCTGGGATGGAGGGAGTACTA 58.490 52.381 0.00 0.00 0.00 1.82
519 522 1.319947 TCTGGGATGGAGGGAGTACT 58.680 55.000 0.00 0.00 0.00 2.73
520 523 2.176247 TTCTGGGATGGAGGGAGTAC 57.824 55.000 0.00 0.00 0.00 2.73
521 524 4.109600 TCATATTCTGGGATGGAGGGAGTA 59.890 45.833 0.00 0.00 0.00 2.59
522 525 3.116199 TCATATTCTGGGATGGAGGGAGT 60.116 47.826 0.00 0.00 0.00 3.85
523 526 3.262915 GTCATATTCTGGGATGGAGGGAG 59.737 52.174 0.00 0.00 0.00 4.30
524 527 3.251484 GTCATATTCTGGGATGGAGGGA 58.749 50.000 0.00 0.00 0.00 4.20
526 529 4.042560 ACATGTCATATTCTGGGATGGAGG 59.957 45.833 0.00 0.00 0.00 4.30
527 530 5.238624 ACATGTCATATTCTGGGATGGAG 57.761 43.478 0.00 0.00 0.00 3.86
528 531 5.651612 AACATGTCATATTCTGGGATGGA 57.348 39.130 0.00 0.00 0.00 3.41
529 532 8.950210 GTAATAACATGTCATATTCTGGGATGG 58.050 37.037 0.00 0.00 0.00 3.51
530 533 9.506018 TGTAATAACATGTCATATTCTGGGATG 57.494 33.333 0.00 0.00 0.00 3.51
532 535 9.337396 GTTGTAATAACATGTCATATTCTGGGA 57.663 33.333 0.00 0.00 34.97 4.37
533 536 8.567948 GGTTGTAATAACATGTCATATTCTGGG 58.432 37.037 0.00 0.00 34.97 4.45
538 541 9.905713 ACTCTGGTTGTAATAACATGTCATATT 57.094 29.630 0.00 3.35 34.97 1.28
541 544 7.987458 CCTACTCTGGTTGTAATAACATGTCAT 59.013 37.037 0.00 0.00 34.97 3.06
542 545 7.327975 CCTACTCTGGTTGTAATAACATGTCA 58.672 38.462 0.00 0.00 34.97 3.58
543 546 6.258068 GCCTACTCTGGTTGTAATAACATGTC 59.742 42.308 0.00 0.00 34.97 3.06
544 547 6.113411 GCCTACTCTGGTTGTAATAACATGT 58.887 40.000 0.00 0.00 34.97 3.21
545 548 6.112734 TGCCTACTCTGGTTGTAATAACATG 58.887 40.000 0.00 0.00 34.97 3.21
546 549 6.308015 TGCCTACTCTGGTTGTAATAACAT 57.692 37.500 0.00 0.00 34.97 2.71
547 550 5.748670 TGCCTACTCTGGTTGTAATAACA 57.251 39.130 0.00 0.00 0.00 2.41
549 552 6.308015 ACATGCCTACTCTGGTTGTAATAA 57.692 37.500 0.00 0.00 0.00 1.40
551 554 4.844349 ACATGCCTACTCTGGTTGTAAT 57.156 40.909 0.00 0.00 0.00 1.89
552 555 4.323417 CAACATGCCTACTCTGGTTGTAA 58.677 43.478 0.00 0.00 33.00 2.41
553 556 3.307410 CCAACATGCCTACTCTGGTTGTA 60.307 47.826 0.00 0.00 35.16 2.41
554 557 2.553028 CCAACATGCCTACTCTGGTTGT 60.553 50.000 0.00 0.00 35.16 3.32
555 558 2.086869 CCAACATGCCTACTCTGGTTG 58.913 52.381 0.00 0.00 36.34 3.77
556 559 1.614317 GCCAACATGCCTACTCTGGTT 60.614 52.381 0.00 0.00 0.00 3.67
557 560 0.035056 GCCAACATGCCTACTCTGGT 60.035 55.000 0.00 0.00 0.00 4.00
558 561 0.035152 TGCCAACATGCCTACTCTGG 60.035 55.000 0.00 0.00 0.00 3.86
559 562 1.825090 TTGCCAACATGCCTACTCTG 58.175 50.000 0.00 0.00 0.00 3.35
560 563 2.025981 TCATTGCCAACATGCCTACTCT 60.026 45.455 0.00 0.00 0.00 3.24
561 564 2.368439 TCATTGCCAACATGCCTACTC 58.632 47.619 0.00 0.00 0.00 2.59
562 565 2.512692 TCATTGCCAACATGCCTACT 57.487 45.000 0.00 0.00 0.00 2.57
563 566 3.709987 GATTCATTGCCAACATGCCTAC 58.290 45.455 0.00 0.00 0.00 3.18
564 567 2.358582 CGATTCATTGCCAACATGCCTA 59.641 45.455 0.00 0.00 0.00 3.93
565 568 1.135527 CGATTCATTGCCAACATGCCT 59.864 47.619 0.00 0.00 0.00 4.75
575 578 1.131883 AGTCAAGCTGCGATTCATTGC 59.868 47.619 0.00 0.00 37.70 3.56
577 580 3.076621 TCAAGTCAAGCTGCGATTCATT 58.923 40.909 0.00 0.00 0.00 2.57
587 590 3.633525 TCAATTGCAAGTCAAGTCAAGCT 59.366 39.130 4.94 0.00 38.22 3.74
614 617 0.758123 TGCATGCTGTATCCCGATCA 59.242 50.000 20.33 0.00 0.00 2.92
615 618 2.005451 GATGCATGCTGTATCCCGATC 58.995 52.381 20.33 6.18 34.07 3.69
616 619 2.105006 GATGCATGCTGTATCCCGAT 57.895 50.000 20.33 0.00 34.07 4.18
617 620 3.612517 GATGCATGCTGTATCCCGA 57.387 52.632 20.33 0.00 34.07 5.14
621 624 1.882912 TTCGGGATGCATGCTGTATC 58.117 50.000 24.35 13.28 38.52 2.24
640 643 1.048601 TTCTGGAGTGAGCGAACCTT 58.951 50.000 0.00 0.00 0.00 3.50
641 644 1.270907 ATTCTGGAGTGAGCGAACCT 58.729 50.000 0.00 0.00 0.00 3.50
642 645 2.100605 AATTCTGGAGTGAGCGAACC 57.899 50.000 0.00 0.00 0.00 3.62
643 646 4.109050 CTCTAATTCTGGAGTGAGCGAAC 58.891 47.826 0.00 0.00 0.00 3.95
644 647 4.017126 TCTCTAATTCTGGAGTGAGCGAA 58.983 43.478 0.00 0.00 32.18 4.70
665 668 0.322816 TGCCAGCCAGGTGAATCTTC 60.323 55.000 0.00 0.00 40.61 2.87
667 670 1.302285 CTGCCAGCCAGGTGAATCT 59.698 57.895 0.00 0.00 40.61 2.40
697 704 1.619704 GGAAGAAGGGTGGGAAATGGG 60.620 57.143 0.00 0.00 0.00 4.00
707 726 4.083862 GCGCGGAGGAAGAAGGGT 62.084 66.667 8.83 0.00 0.00 4.34
798 830 4.083600 GCGGCATTGCGTCAACGA 62.084 61.111 6.75 0.00 43.02 3.85
854 900 4.979564 ATATGCGTCAACAGATCAATCG 57.020 40.909 0.00 0.00 0.00 3.34
889 940 0.178975 AGGATAGGACAGAGCTCCGG 60.179 60.000 10.93 5.71 35.20 5.14
958 1031 4.918201 GATTGCTCCCTCCCGCCG 62.918 72.222 0.00 0.00 0.00 6.46
1353 1435 1.800713 GAAGTCGGCGAGGTCGAAC 60.801 63.158 11.20 0.00 42.59 3.95
1486 1568 2.462782 CCTCGTCGTCCTCGTCCTC 61.463 68.421 0.00 0.00 38.33 3.71
1489 1571 1.447489 TCTCCTCGTCGTCCTCGTC 60.447 63.158 0.00 0.00 38.33 4.20
1490 1572 1.741032 GTCTCCTCGTCGTCCTCGT 60.741 63.158 0.00 0.00 38.33 4.18
1491 1573 2.800581 CGTCTCCTCGTCGTCCTCG 61.801 68.421 0.00 0.00 38.55 4.63
1492 1574 3.091529 CGTCTCCTCGTCGTCCTC 58.908 66.667 0.00 0.00 0.00 3.71
1493 1575 3.126225 GCGTCTCCTCGTCGTCCT 61.126 66.667 0.00 0.00 0.00 3.85
1494 1576 4.517703 CGCGTCTCCTCGTCGTCC 62.518 72.222 0.00 0.00 0.00 4.79
1801 1886 4.731612 CAGTGCGCTCTGCTCCGT 62.732 66.667 24.71 0.00 46.63 4.69
1821 1906 1.944024 CAGAGCTCGAAGTAGGACGAT 59.056 52.381 8.37 0.00 37.86 3.73
1929 2014 1.514087 GTCTTCGACGTGGGCCATA 59.486 57.895 10.70 0.00 0.00 2.74
1987 2072 3.671410 CTCCATGGGGCCCACCAA 61.671 66.667 31.54 15.07 45.13 3.67
2036 2121 2.367241 TCGAACACCATCCACTCTTTCA 59.633 45.455 0.00 0.00 0.00 2.69
2076 2161 1.901833 CCAAATTGCCCTTGCCTAAGT 59.098 47.619 0.00 0.00 36.33 2.24
2077 2162 1.901833 ACCAAATTGCCCTTGCCTAAG 59.098 47.619 0.00 0.00 36.33 2.18
2091 2176 2.745281 CGGGTTGACGTAATCACCAAAT 59.255 45.455 0.00 0.00 36.92 2.32
2094 2179 0.680618 ACGGGTTGACGTAATCACCA 59.319 50.000 0.00 0.00 46.58 4.17
2232 2321 7.816640 TGCTTAGCTTTCGATTTGTTTCTAAT 58.183 30.769 5.60 0.00 0.00 1.73
2265 2354 4.330074 CCTATTTGCACTCGTGGTCTTTAG 59.670 45.833 0.00 0.00 0.00 1.85
2306 2395 4.715896 CAGCAATCACATGTACTCACAAC 58.284 43.478 0.00 0.00 38.42 3.32
2322 2411 2.679837 CTCAATCTAACCGTGCAGCAAT 59.320 45.455 0.00 0.00 0.00 3.56
2351 2440 2.101783 TGGTTAGGGAATGCTTGCATG 58.898 47.619 8.98 0.00 0.00 4.06
2425 2514 6.236017 TCTAAATCGAAAACGCAATTGTCT 57.764 33.333 7.40 0.00 0.00 3.41
2447 2536 4.498009 CGATGTTTGCCCTCCACATAAATC 60.498 45.833 0.00 0.00 31.10 2.17
2452 2541 1.315257 GCGATGTTTGCCCTCCACAT 61.315 55.000 0.00 0.00 33.72 3.21
2473 2562 5.063944 GTCGCAGAAATAGCTTGATCTTCAA 59.936 40.000 0.00 0.00 39.69 2.69
2531 2622 4.988598 ACAGCAGCCAACCGGACG 62.989 66.667 9.46 0.00 0.00 4.79
2533 2624 4.641645 CCACAGCAGCCAACCGGA 62.642 66.667 9.46 0.00 0.00 5.14
2544 2636 0.890542 TGATTGTGAGGTGCCACAGC 60.891 55.000 0.00 0.00 46.32 4.40
2565 2657 5.539193 AGACGTAACATAGGATCCCTAAAGG 59.461 44.000 8.55 0.00 39.77 3.11
2567 2659 6.371278 AGAGACGTAACATAGGATCCCTAAA 58.629 40.000 8.55 0.00 39.77 1.85
2569 2661 5.579753 AGAGACGTAACATAGGATCCCTA 57.420 43.478 8.55 0.45 40.71 3.53
2571 2663 5.163437 ACAAAGAGACGTAACATAGGATCCC 60.163 44.000 8.55 0.00 0.00 3.85
2572 2664 5.749109 CACAAAGAGACGTAACATAGGATCC 59.251 44.000 2.48 2.48 0.00 3.36
2579 3989 4.439057 ACACACACAAAGAGACGTAACAT 58.561 39.130 0.00 0.00 0.00 2.71
2602 4012 1.297745 GTAGAACGAGGAGAGCGCG 60.298 63.158 0.00 0.00 0.00 6.86
2633 4043 5.926542 CCATTGTTGGTTATCGACGATAGAT 59.073 40.000 16.53 0.00 38.30 1.98
2645 4055 0.415429 ATGGGGGCCATTGTTGGTTA 59.585 50.000 4.39 0.00 42.23 2.85
2657 4067 3.761426 TAGGGGGCAAATGGGGGC 61.761 66.667 0.00 0.00 0.00 5.80
2668 4078 2.847715 GGTGATCCGGGTAGGGGG 60.848 72.222 0.00 0.00 41.52 5.40
2687 4097 4.864334 GCAGCGATGGGGTCAGGG 62.864 72.222 1.46 0.00 0.00 4.45
2697 4107 1.293498 GATGTATCGGGGCAGCGAT 59.707 57.895 0.00 0.00 0.00 4.58
2702 4112 1.629043 GACTAGGATGTATCGGGGCA 58.371 55.000 0.00 0.00 0.00 5.36
2714 4136 2.965831 GTGTATGGCAGATGGACTAGGA 59.034 50.000 0.00 0.00 0.00 2.94
2726 4148 3.006133 TGGGCGAGGTGTATGGCA 61.006 61.111 0.00 0.00 0.00 4.92
2737 4159 1.098712 GTCAAACTTGTGGTGGGCGA 61.099 55.000 0.00 0.00 0.00 5.54
2798 4221 1.002251 GACTCCATCGCGTCTCCTAAG 60.002 57.143 5.77 0.00 0.00 2.18
2874 4297 0.108804 AGACACGATGCCGACGAAAT 60.109 50.000 0.00 0.00 39.50 2.17
2882 4305 1.224075 CCATCATCAGACACGATGCC 58.776 55.000 0.00 0.00 42.15 4.40
2883 4306 1.596260 CACCATCATCAGACACGATGC 59.404 52.381 0.00 0.00 42.15 3.91
2893 4316 4.081142 ACCGAATTGTAGTCACCATCATCA 60.081 41.667 0.00 0.00 0.00 3.07
2902 4325 5.337578 TCATCATCACCGAATTGTAGTCA 57.662 39.130 0.00 0.00 0.00 3.41
2909 4332 6.235664 TCATCATCATCATCATCACCGAATT 58.764 36.000 0.00 0.00 0.00 2.17
2913 4336 5.175859 TCATCATCATCATCATCATCACCG 58.824 41.667 0.00 0.00 0.00 4.94
2915 4338 7.849804 TCATCATCATCATCATCATCATCAC 57.150 36.000 0.00 0.00 0.00 3.06
2917 4340 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
2918 4341 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
2919 4342 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
2920 4343 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
2921 4344 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
2922 4345 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
2923 4346 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
2924 4347 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
2925 4348 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
2926 4349 8.555361 GTCATCATCATCATCATCATCATCATC 58.445 37.037 0.00 0.00 0.00 2.92
2927 4350 7.225538 CGTCATCATCATCATCATCATCATCAT 59.774 37.037 0.00 0.00 0.00 2.45
2928 4351 6.535150 CGTCATCATCATCATCATCATCATCA 59.465 38.462 0.00 0.00 0.00 3.07
2929 4352 6.757010 TCGTCATCATCATCATCATCATCATC 59.243 38.462 0.00 0.00 0.00 2.92
2930 4353 6.640518 TCGTCATCATCATCATCATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
2931 4354 6.032956 TCGTCATCATCATCATCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
2932 4355 6.757010 TCATCGTCATCATCATCATCATCATC 59.243 38.462 0.00 0.00 0.00 2.92
2933 4356 6.640518 TCATCGTCATCATCATCATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
2934 4357 6.032956 TCATCGTCATCATCATCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
2935 4358 5.005875 GCTCATCGTCATCATCATCATCATC 59.994 44.000 0.00 0.00 0.00 2.92
2936 4359 4.870991 GCTCATCGTCATCATCATCATCAT 59.129 41.667 0.00 0.00 0.00 2.45
2937 4360 4.243270 GCTCATCGTCATCATCATCATCA 58.757 43.478 0.00 0.00 0.00 3.07
2938 4361 4.243270 TGCTCATCGTCATCATCATCATC 58.757 43.478 0.00 0.00 0.00 2.92
2943 4366 2.631545 AGGATGCTCATCGTCATCATCA 59.368 45.455 4.02 0.00 40.50 3.07
2972 4395 7.129425 AGAACATACTTCTCTTCCTACTCCAT 58.871 38.462 0.00 0.00 0.00 3.41
2978 4401 8.423906 AAGTTGAGAACATACTTCTCTTCCTA 57.576 34.615 10.60 0.00 43.91 2.94
2998 4421 3.190535 CCGACATCAAACCCCTAAAGTTG 59.809 47.826 0.00 0.00 0.00 3.16
3050 4473 9.174166 GTTACTGTAAACATCAATATGACCCTT 57.826 33.333 1.10 0.00 36.54 3.95
3072 4495 4.139038 TGGGTTGGCTTTGAAGTAGTTAC 58.861 43.478 0.00 0.00 0.00 2.50
3073 4496 4.141344 ACTGGGTTGGCTTTGAAGTAGTTA 60.141 41.667 0.00 0.00 0.00 2.24
3116 4539 0.868602 CACATCCGGTAGTTACGCCG 60.869 60.000 12.75 12.75 46.80 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.