Multiple sequence alignment - TraesCS5B01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G296000 chr5B 100.000 5620 0 0 1 5620 479619753 479625372 0.000000e+00 10379.0
1 TraesCS5B01G296000 chr5A 92.541 2172 84 30 3492 5620 504860816 504862952 0.000000e+00 3042.0
2 TraesCS5B01G296000 chr5A 93.654 1497 56 11 1838 3329 504859355 504860817 0.000000e+00 2202.0
3 TraesCS5B01G296000 chr5A 88.313 1446 80 28 416 1810 504857952 504859359 0.000000e+00 1652.0
4 TraesCS5B01G296000 chr5A 87.136 653 67 9 2693 3329 81752555 81753206 0.000000e+00 725.0
5 TraesCS5B01G296000 chr5A 86.810 652 71 7 2693 3329 8489180 8488529 0.000000e+00 713.0
6 TraesCS5B01G296000 chr5A 82.738 336 39 7 1 319 504857580 504857913 1.190000e-71 281.0
7 TraesCS5B01G296000 chr5A 86.590 261 26 6 3492 3749 8488530 8488276 4.290000e-71 279.0
8 TraesCS5B01G296000 chr5A 86.822 258 25 6 3492 3746 81753205 81753456 4.290000e-71 279.0
9 TraesCS5B01G296000 chr5A 88.482 191 16 5 3325 3514 12419772 12419587 5.670000e-55 226.0
10 TraesCS5B01G296000 chr5A 85.417 192 23 5 3327 3517 679114987 679115174 1.600000e-45 195.0
11 TraesCS5B01G296000 chr5A 82.812 192 23 7 3325 3514 546778662 546778479 4.510000e-36 163.0
12 TraesCS5B01G296000 chr5A 82.759 174 15 13 542 703 554982764 554982934 2.110000e-29 141.0
13 TraesCS5B01G296000 chr5A 89.583 96 9 1 297 391 707468234 707468139 2.750000e-23 121.0
14 TraesCS5B01G296000 chr5A 91.026 78 7 0 324 401 600697101 600697178 7.700000e-19 106.0
15 TraesCS5B01G296000 chr5D 95.375 1838 65 12 3496 5322 399214537 399216365 0.000000e+00 2905.0
16 TraesCS5B01G296000 chr5D 94.566 1233 41 5 2104 3324 399213317 399214535 0.000000e+00 1882.0
17 TraesCS5B01G296000 chr5D 84.459 1422 108 40 1 1366 399211577 399212941 0.000000e+00 1297.0
18 TraesCS5B01G296000 chr5D 93.516 401 22 3 1388 1785 399212920 399213319 1.350000e-165 593.0
19 TraesCS5B01G296000 chr5D 92.971 313 10 4 5320 5620 399216446 399216758 3.990000e-121 446.0
20 TraesCS5B01G296000 chr5D 83.721 172 22 5 525 690 377945830 377946001 2.100000e-34 158.0
21 TraesCS5B01G296000 chr5D 81.395 172 24 7 541 704 13814271 13814442 3.530000e-27 134.0
22 TraesCS5B01G296000 chr5D 90.278 72 7 0 297 368 548803207 548803136 1.670000e-15 95.3
23 TraesCS5B01G296000 chr5D 85.057 87 11 2 283 367 259172029 259171943 2.790000e-13 87.9
24 TraesCS5B01G296000 chr5D 93.478 46 3 0 226 271 565312265 565312310 1.010000e-07 69.4
25 TraesCS5B01G296000 chr3A 88.661 1270 117 17 3492 4753 680746064 680744814 0.000000e+00 1522.0
26 TraesCS5B01G296000 chr3A 80.292 137 20 7 347 477 742012504 742012639 4.630000e-16 97.1
27 TraesCS5B01G296000 chr3A 94.545 55 1 2 1550 1603 470095734 470095787 3.610000e-12 84.2
28 TraesCS5B01G296000 chr3A 97.143 35 1 0 228 262 690075903 690075869 6.080000e-05 60.2
29 TraesCS5B01G296000 chr1A 88.497 652 60 7 2693 3329 589575838 589575187 0.000000e+00 774.0
30 TraesCS5B01G296000 chr1A 87.356 261 24 7 3492 3749 589575188 589574934 1.980000e-74 291.0
31 TraesCS5B01G296000 chr1A 82.564 195 25 7 540 725 520424936 520424742 4.510000e-36 163.0
32 TraesCS5B01G296000 chr3B 87.519 649 68 8 2693 3329 802680432 802679785 0.000000e+00 737.0
33 TraesCS5B01G296000 chr3B 81.540 948 108 28 4097 4995 719436182 719435253 0.000000e+00 719.0
34 TraesCS5B01G296000 chr3B 92.164 268 19 2 3834 4101 719443026 719442761 1.480000e-100 377.0
35 TraesCS5B01G296000 chr3B 79.102 579 68 23 945 1482 719444521 719443955 3.220000e-92 350.0
36 TraesCS5B01G296000 chr3B 85.824 261 28 6 3492 3749 802679786 802679532 9.280000e-68 268.0
37 TraesCS5B01G296000 chr3B 87.629 194 21 3 3324 3516 5615190 5614999 7.330000e-54 222.0
38 TraesCS5B01G296000 chr3B 83.420 193 26 4 3328 3517 532783523 532783334 2.080000e-39 174.0
39 TraesCS5B01G296000 chr3B 85.455 165 22 2 528 690 683837386 683837222 2.690000e-38 171.0
40 TraesCS5B01G296000 chr3B 85.030 167 23 2 525 690 511621103 511621268 9.680000e-38 169.0
41 TraesCS5B01G296000 chr3B 87.255 102 10 3 368 467 8858298 8858198 4.600000e-21 113.0
42 TraesCS5B01G296000 chr3B 84.404 109 13 4 347 453 767565688 767565794 2.770000e-18 104.0
43 TraesCS5B01G296000 chr3D 82.021 940 97 33 4097 4996 543869608 543868701 0.000000e+00 734.0
44 TraesCS5B01G296000 chr3D 91.818 220 18 0 3834 4053 543869832 543869613 1.970000e-79 307.0
45 TraesCS5B01G296000 chr3D 85.629 167 22 2 3327 3493 569533796 569533960 2.080000e-39 174.0
46 TraesCS5B01G296000 chr3D 84.524 168 22 3 528 691 514004242 514004075 4.510000e-36 163.0
47 TraesCS5B01G296000 chr3D 90.164 122 9 3 347 466 104342949 104342829 7.540000e-34 156.0
48 TraesCS5B01G296000 chr3D 83.929 112 17 1 369 480 499961640 499961750 7.700000e-19 106.0
49 TraesCS5B01G296000 chr4A 87.270 652 68 7 2693 3329 526045880 526045229 0.000000e+00 730.0
50 TraesCS5B01G296000 chr4A 93.143 175 10 2 3328 3502 92731988 92731816 7.230000e-64 255.0
51 TraesCS5B01G296000 chr4A 83.333 210 26 3 1 204 611279733 611279527 9.610000e-43 185.0
52 TraesCS5B01G296000 chr2B 87.270 652 68 7 2693 3329 53601117 53601768 0.000000e+00 730.0
53 TraesCS5B01G296000 chr2B 76.950 564 79 21 2005 2537 341066659 341066116 1.990000e-69 274.0
54 TraesCS5B01G296000 chr2B 86.916 107 11 3 297 402 106960017 106960121 3.560000e-22 117.0
55 TraesCS5B01G296000 chr2B 82.812 128 19 3 550 674 18151542 18151669 1.660000e-20 111.0
56 TraesCS5B01G296000 chr2B 94.444 54 3 0 1550 1603 87922741 87922794 3.610000e-12 84.2
57 TraesCS5B01G296000 chr2A 86.503 652 69 10 2693 3329 47573724 47573077 0.000000e+00 699.0
58 TraesCS5B01G296000 chr2A 85.824 261 28 8 3492 3749 47573078 47572824 9.280000e-68 268.0
59 TraesCS5B01G296000 chr2A 84.524 168 20 5 528 690 774861090 774860924 1.620000e-35 161.0
60 TraesCS5B01G296000 chr2A 83.929 168 20 5 528 690 146792445 146792280 2.710000e-33 154.0
61 TraesCS5B01G296000 chr2A 78.261 138 15 10 210 338 33543955 33544086 2.170000e-09 75.0
62 TraesCS5B01G296000 chr1B 80.435 690 94 23 1969 2629 33988698 33989375 6.540000e-134 488.0
63 TraesCS5B01G296000 chr1B 91.209 182 16 0 3325 3506 535590049 535589868 1.210000e-61 248.0
64 TraesCS5B01G296000 chr1B 91.549 71 5 1 298 368 535352735 535352804 4.630000e-16 97.1
65 TraesCS5B01G296000 chr1B 100.000 45 0 0 1550 1594 659380952 659380996 3.610000e-12 84.2
66 TraesCS5B01G296000 chr7B 78.045 665 93 23 2006 2639 259609799 259609157 2.470000e-98 370.0
67 TraesCS5B01G296000 chr7B 77.061 667 99 28 2005 2639 400832833 400833477 9.020000e-88 335.0
68 TraesCS5B01G296000 chr7B 81.174 409 52 16 2240 2639 305431292 305430900 7.070000e-79 305.0
69 TraesCS5B01G296000 chr7B 80.929 409 53 14 2240 2639 195422202 195421810 3.290000e-77 300.0
70 TraesCS5B01G296000 chr7B 86.667 165 19 2 528 689 131949434 131949270 4.470000e-41 180.0
71 TraesCS5B01G296000 chr7B 94.231 52 1 2 1550 1600 162120856 162120806 1.680000e-10 78.7
72 TraesCS5B01G296000 chr7B 91.489 47 2 2 227 271 564377138 564377092 4.700000e-06 63.9
73 TraesCS5B01G296000 chr6B 77.879 660 94 22 2011 2639 369660881 369661519 4.140000e-96 363.0
74 TraesCS5B01G296000 chr6B 83.432 169 24 3 540 704 234106186 234106354 2.710000e-33 154.0
75 TraesCS5B01G296000 chr6B 78.723 188 33 6 539 722 535951330 535951146 9.890000e-23 119.0
76 TraesCS5B01G296000 chr6B 85.849 106 9 4 347 448 661519572 661519469 2.140000e-19 108.0
77 TraesCS5B01G296000 chr6A 86.207 261 27 6 3492 3749 437541367 437541113 1.990000e-69 274.0
78 TraesCS5B01G296000 chr6A 83.665 251 19 12 5381 5609 31757573 31757323 3.410000e-52 217.0
79 TraesCS5B01G296000 chr6A 92.308 65 5 0 1530 1594 256473625 256473689 6.000000e-15 93.5
80 TraesCS5B01G296000 chr6D 93.889 180 8 3 3325 3502 41542654 41542476 9.280000e-68 268.0
81 TraesCS5B01G296000 chr6D 88.119 101 10 2 369 467 78776176 78776276 9.890000e-23 119.0
82 TraesCS5B01G296000 chr6D 90.769 65 6 0 1530 1594 166775137 166775073 2.790000e-13 87.9
83 TraesCS5B01G296000 chr2D 95.238 168 7 1 3328 3495 593801760 593801594 1.200000e-66 265.0
84 TraesCS5B01G296000 chr2D 95.181 166 7 1 3328 3493 637587910 637588074 1.550000e-65 261.0
85 TraesCS5B01G296000 chr2D 94.152 171 9 1 3325 3495 47423679 47423848 5.590000e-65 259.0
86 TraesCS5B01G296000 chr2D 92.697 178 12 1 3319 3496 609886782 609886958 7.230000e-64 255.0
87 TraesCS5B01G296000 chr2D 81.910 199 28 6 3328 3523 439086286 439086093 1.620000e-35 161.0
88 TraesCS5B01G296000 chr2D 84.524 168 21 5 528 690 449565879 449565712 1.620000e-35 161.0
89 TraesCS5B01G296000 chr2D 83.626 171 19 7 542 704 247789492 247789323 9.750000e-33 152.0
90 TraesCS5B01G296000 chr1D 93.678 174 10 1 3325 3498 9218375 9218203 5.590000e-65 259.0
91 TraesCS5B01G296000 chr1D 83.735 166 24 3 528 690 199563342 199563177 2.710000e-33 154.0
92 TraesCS5B01G296000 chr1D 88.350 103 11 1 360 461 425522729 425522627 7.650000e-24 122.0
93 TraesCS5B01G296000 chr4D 94.118 170 9 1 3327 3496 93336683 93336851 2.010000e-64 257.0
94 TraesCS5B01G296000 chr4D 84.496 129 10 9 346 467 465750374 465750499 9.890000e-23 119.0
95 TraesCS5B01G296000 chr4D 85.849 106 14 1 369 473 53790490 53790595 1.660000e-20 111.0
96 TraesCS5B01G296000 chr4D 81.967 122 19 2 335 453 446110732 446110853 3.580000e-17 100.0
97 TraesCS5B01G296000 chr7D 86.190 210 23 4 1 204 553497738 553497529 7.330000e-54 222.0
98 TraesCS5B01G296000 chr7D 77.922 385 54 20 896 1265 569559090 569558722 1.590000e-50 211.0
99 TraesCS5B01G296000 chr7D 78.249 354 57 13 913 1265 569583054 569582720 5.710000e-50 209.0
100 TraesCS5B01G296000 chr7A 85.714 210 24 4 1 204 128788896 128789105 3.410000e-52 217.0
101 TraesCS5B01G296000 chr7A 83.838 198 27 5 3327 3522 61776990 61776796 3.460000e-42 183.0
102 TraesCS5B01G296000 chr7A 87.013 154 16 3 540 689 150879529 150879376 2.690000e-38 171.0
103 TraesCS5B01G296000 chr7A 91.525 59 4 1 1550 1608 330430255 330430312 4.670000e-11 80.5
104 TraesCS5B01G296000 chr4B 85.238 210 25 4 1 204 285583190 285583399 1.590000e-50 211.0
105 TraesCS5B01G296000 chr4B 83.500 200 24 7 3328 3523 362379229 362379423 1.610000e-40 178.0
106 TraesCS5B01G296000 chr4B 90.278 72 6 1 297 368 637589310 637589240 6.000000e-15 93.5
107 TraesCS5B01G296000 chr4B 83.333 102 12 4 272 368 553259134 553259235 7.760000e-14 89.8
108 TraesCS5B01G296000 chrUn 84.940 166 22 2 528 690 102576397 102576232 1.250000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G296000 chr5B 479619753 479625372 5619 False 10379.00 10379 100.0000 1 5620 1 chr5B.!!$F1 5619
1 TraesCS5B01G296000 chr5A 504857580 504862952 5372 False 1794.25 3042 89.3115 1 5620 4 chr5A.!!$F5 5619
2 TraesCS5B01G296000 chr5A 81752555 81753456 901 False 502.00 725 86.9790 2693 3746 2 chr5A.!!$F4 1053
3 TraesCS5B01G296000 chr5A 8488276 8489180 904 True 496.00 713 86.7000 2693 3749 2 chr5A.!!$R4 1056
4 TraesCS5B01G296000 chr5D 399211577 399216758 5181 False 1424.60 2905 92.1774 1 5620 5 chr5D.!!$F4 5619
5 TraesCS5B01G296000 chr3A 680744814 680746064 1250 True 1522.00 1522 88.6610 3492 4753 1 chr3A.!!$R1 1261
6 TraesCS5B01G296000 chr1A 589574934 589575838 904 True 532.50 774 87.9265 2693 3749 2 chr1A.!!$R2 1056
7 TraesCS5B01G296000 chr3B 719435253 719436182 929 True 719.00 719 81.5400 4097 4995 1 chr3B.!!$R5 898
8 TraesCS5B01G296000 chr3B 802679532 802680432 900 True 502.50 737 86.6715 2693 3749 2 chr3B.!!$R7 1056
9 TraesCS5B01G296000 chr3B 719442761 719444521 1760 True 363.50 377 85.6330 945 4101 2 chr3B.!!$R6 3156
10 TraesCS5B01G296000 chr3D 543868701 543869832 1131 True 520.50 734 86.9195 3834 4996 2 chr3D.!!$R3 1162
11 TraesCS5B01G296000 chr4A 526045229 526045880 651 True 730.00 730 87.2700 2693 3329 1 chr4A.!!$R2 636
12 TraesCS5B01G296000 chr2B 53601117 53601768 651 False 730.00 730 87.2700 2693 3329 1 chr2B.!!$F2 636
13 TraesCS5B01G296000 chr2B 341066116 341066659 543 True 274.00 274 76.9500 2005 2537 1 chr2B.!!$R1 532
14 TraesCS5B01G296000 chr2A 47572824 47573724 900 True 483.50 699 86.1635 2693 3749 2 chr2A.!!$R3 1056
15 TraesCS5B01G296000 chr1B 33988698 33989375 677 False 488.00 488 80.4350 1969 2629 1 chr1B.!!$F1 660
16 TraesCS5B01G296000 chr7B 259609157 259609799 642 True 370.00 370 78.0450 2006 2639 1 chr7B.!!$R4 633
17 TraesCS5B01G296000 chr7B 400832833 400833477 644 False 335.00 335 77.0610 2005 2639 1 chr7B.!!$F1 634
18 TraesCS5B01G296000 chr6B 369660881 369661519 638 False 363.00 363 77.8790 2011 2639 1 chr6B.!!$F2 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 677 0.249073 ATCTCGACGCAAGGAATCCG 60.249 55.000 0.00 0.0 46.39 4.18 F
2063 2213 0.107017 GCCAGTGCACCAGGTATGAT 60.107 55.000 22.62 0.0 37.47 2.45 F
3084 3279 0.609957 TCAATGTCAAGGGCAGGCAG 60.610 55.000 0.00 0.0 0.00 4.85 F
4028 4320 1.128136 GAGATGATTGATGATGCCGCG 59.872 52.381 0.00 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2490 0.532640 CAAGCTGGGGCAACAAAACC 60.533 55.0 0.00 0.00 41.70 3.27 R
4025 4317 0.312416 CCTCTTCAGGTCTATCCGCG 59.688 60.0 0.00 0.00 41.99 6.46 R
4385 4695 0.453390 GCTCAGCTAAATGTGGCCAC 59.547 55.0 29.67 29.67 0.00 5.01 R
5042 5415 0.467844 TGGGCACTGTGCTGTTCAAT 60.468 50.0 29.54 0.00 44.28 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.588989 GAGCCTTCCCTCCTGCAG 59.411 66.667 6.78 6.78 0.00 4.41
204 211 4.612412 GCCGTTCCACCACCGACA 62.612 66.667 0.00 0.00 0.00 4.35
223 230 4.201532 CGACACATTTTTGCGTGAAAAACA 60.202 37.500 8.72 0.00 44.44 2.83
226 233 4.092675 CACATTTTTGCGTGAAAAACACCT 59.907 37.500 8.72 0.00 44.44 4.00
230 237 5.674933 TTTTGCGTGAAAAACACCTTTTT 57.325 30.435 0.00 0.00 45.73 1.94
249 256 0.249699 TTTCTTTCGCGAGAGGCACA 60.250 50.000 24.53 4.30 43.84 4.57
250 257 0.249699 TTCTTTCGCGAGAGGCACAA 60.250 50.000 24.53 10.19 43.84 3.33
331 349 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
332 350 1.067060 GAGAGGCACGGTTTTGCTTTT 59.933 47.619 0.00 0.00 42.56 2.27
346 364 1.071605 GCTTTTGCGAGAGACACGAT 58.928 50.000 0.00 0.00 34.86 3.73
347 365 1.461127 GCTTTTGCGAGAGACACGATT 59.539 47.619 0.00 0.00 34.86 3.34
348 366 2.096218 GCTTTTGCGAGAGACACGATTT 60.096 45.455 0.00 0.00 34.86 2.17
350 368 4.377022 GCTTTTGCGAGAGACACGATTTTA 60.377 41.667 0.00 0.00 34.86 1.52
351 369 4.640805 TTTGCGAGAGACACGATTTTAC 57.359 40.909 0.00 0.00 0.00 2.01
352 370 3.570926 TGCGAGAGACACGATTTTACT 57.429 42.857 0.00 0.00 0.00 2.24
353 371 3.909430 TGCGAGAGACACGATTTTACTT 58.091 40.909 0.00 0.00 0.00 2.24
354 372 4.304110 TGCGAGAGACACGATTTTACTTT 58.696 39.130 0.00 0.00 0.00 2.66
355 373 4.384846 TGCGAGAGACACGATTTTACTTTC 59.615 41.667 0.00 0.00 0.00 2.62
356 374 4.488889 GCGAGAGACACGATTTTACTTTCG 60.489 45.833 0.00 0.00 41.04 3.46
357 375 4.488889 CGAGAGACACGATTTTACTTTCGC 60.489 45.833 0.00 0.00 38.91 4.70
358 376 3.364023 AGAGACACGATTTTACTTTCGCG 59.636 43.478 0.00 0.00 38.91 5.87
359 377 3.311106 AGACACGATTTTACTTTCGCGA 58.689 40.909 3.71 3.71 38.91 5.87
360 378 3.364023 AGACACGATTTTACTTTCGCGAG 59.636 43.478 9.59 0.27 38.91 5.03
361 379 3.311106 ACACGATTTTACTTTCGCGAGA 58.689 40.909 9.59 3.35 38.91 4.04
362 380 3.364023 ACACGATTTTACTTTCGCGAGAG 59.636 43.478 23.66 23.66 43.69 3.20
363 381 2.921754 ACGATTTTACTTTCGCGAGAGG 59.078 45.455 27.80 15.76 43.69 3.69
364 382 2.285084 CGATTTTACTTTCGCGAGAGGC 60.285 50.000 27.80 10.56 43.69 4.70
365 383 2.157834 TTTTACTTTCGCGAGAGGCA 57.842 45.000 27.80 14.19 43.84 4.75
366 384 1.425412 TTTACTTTCGCGAGAGGCAC 58.575 50.000 27.80 0.00 43.84 5.01
367 385 0.731514 TTACTTTCGCGAGAGGCACG 60.732 55.000 27.80 6.46 43.84 5.34
368 386 1.859427 TACTTTCGCGAGAGGCACGT 61.859 55.000 27.80 11.92 43.84 4.49
369 387 2.022129 CTTTCGCGAGAGGCACGTT 61.022 57.895 18.35 0.00 43.84 3.99
370 388 1.557443 CTTTCGCGAGAGGCACGTTT 61.557 55.000 18.35 0.00 43.84 3.60
371 389 1.155424 TTTCGCGAGAGGCACGTTTT 61.155 50.000 9.59 0.00 43.84 2.43
372 390 1.155424 TTCGCGAGAGGCACGTTTTT 61.155 50.000 9.59 0.00 43.84 1.94
373 391 1.438710 CGCGAGAGGCACGTTTTTG 60.439 57.895 0.00 0.00 43.84 2.44
374 392 1.725973 GCGAGAGGCACGTTTTTGC 60.726 57.895 0.00 0.00 42.87 3.68
383 401 0.991770 CACGTTTTTGCTTCCGCGAG 60.992 55.000 8.23 0.00 39.65 5.03
395 413 2.100631 CCGCGAGAGGCACGATTTT 61.101 57.895 8.23 0.00 43.84 1.82
402 420 2.226437 GAGAGGCACGATTTTGCTTTCA 59.774 45.455 0.00 0.00 42.56 2.69
403 421 2.030805 AGAGGCACGATTTTGCTTTCAC 60.031 45.455 0.00 0.00 42.56 3.18
411 429 1.791103 TTTTGCTTTCACGGGAGGCG 61.791 55.000 9.53 0.00 0.00 5.52
423 466 2.126850 GAGGCGCGGTTTTGCTTC 60.127 61.111 8.83 0.00 0.00 3.86
456 500 4.598257 CGTGCCTCTCGGAACAAT 57.402 55.556 0.00 0.00 38.98 2.71
461 505 3.424433 CGTGCCTCTCGGAACAATAAAAC 60.424 47.826 0.00 0.00 38.98 2.43
467 511 6.128117 GCCTCTCGGAACAATAAAACATGTTA 60.128 38.462 12.39 0.00 39.73 2.41
499 543 1.896660 GCCGTGCCTCTTGGAAACA 60.897 57.895 0.00 0.00 39.83 2.83
533 593 5.545658 TTCATTAGAGGCACGATTTGTTC 57.454 39.130 0.00 0.00 0.00 3.18
614 677 0.249073 ATCTCGACGCAAGGAATCCG 60.249 55.000 0.00 0.00 46.39 4.18
651 715 5.290158 GTCGAGATTTAGACGCATGGTTTAA 59.710 40.000 0.00 0.00 0.00 1.52
714 782 1.139989 AGTTGCGACGAATGACACAG 58.860 50.000 0.00 0.00 0.00 3.66
741 815 0.957888 GCGGCTGAGAGGCTCTTTTT 60.958 55.000 19.80 0.00 38.85 1.94
815 892 1.574428 CGAGCCAGGGAAACAAACG 59.426 57.895 0.00 0.00 0.00 3.60
816 893 1.285950 GAGCCAGGGAAACAAACGC 59.714 57.895 0.00 0.00 0.00 4.84
820 897 2.517402 AGGGAAACAAACGCCGCA 60.517 55.556 0.00 0.00 0.00 5.69
976 1074 4.426313 CCCCTGGACTTTCCCCGC 62.426 72.222 0.00 0.00 35.03 6.13
1006 1104 1.153823 AGAGAAACGGCGATGACGG 60.154 57.895 16.62 0.00 39.02 4.79
1141 1262 1.052124 ACCAAGGAGGGTTCACACGA 61.052 55.000 0.00 0.00 43.89 4.35
1534 1682 4.141251 AGGGCTGGAAAAGAAAACTACTCA 60.141 41.667 0.00 0.00 0.00 3.41
1648 1796 4.079558 ACTTGCCATAGTTCCCATCATCTT 60.080 41.667 0.00 0.00 0.00 2.40
1671 1819 5.122519 TCAAGCCGAAGCACAATATCAATA 58.877 37.500 0.00 0.00 43.56 1.90
1728 1876 3.367703 CCAATCAATCAAGCCCTGTTGAC 60.368 47.826 0.00 0.00 39.25 3.18
1756 1904 0.315568 CCGGAGAATAGAAGGGAGCG 59.684 60.000 0.00 0.00 0.00 5.03
1760 1908 2.630580 GGAGAATAGAAGGGAGCGACAT 59.369 50.000 0.00 0.00 0.00 3.06
1810 1958 4.908601 TCACCAGTTAATGTGAGACCAT 57.091 40.909 2.43 0.00 36.62 3.55
1811 1959 5.241403 TCACCAGTTAATGTGAGACCATT 57.759 39.130 2.43 0.00 36.62 3.16
1812 1960 5.630121 TCACCAGTTAATGTGAGACCATTT 58.370 37.500 2.43 0.00 36.62 2.32
1813 1961 6.068010 TCACCAGTTAATGTGAGACCATTTT 58.932 36.000 2.43 0.00 36.62 1.82
1814 1962 6.549364 TCACCAGTTAATGTGAGACCATTTTT 59.451 34.615 2.43 0.00 36.62 1.94
1815 1963 7.721842 TCACCAGTTAATGTGAGACCATTTTTA 59.278 33.333 2.43 0.00 36.62 1.52
1816 1964 8.023128 CACCAGTTAATGTGAGACCATTTTTAG 58.977 37.037 0.00 0.00 36.48 1.85
1817 1965 7.029563 CCAGTTAATGTGAGACCATTTTTAGC 58.970 38.462 0.00 0.00 36.48 3.09
1818 1966 7.029563 CAGTTAATGTGAGACCATTTTTAGCC 58.970 38.462 0.00 0.00 36.48 3.93
1819 1967 6.948309 AGTTAATGTGAGACCATTTTTAGCCT 59.052 34.615 0.00 0.00 36.48 4.58
1820 1968 8.107095 AGTTAATGTGAGACCATTTTTAGCCTA 58.893 33.333 0.00 0.00 36.48 3.93
1821 1969 6.759497 AATGTGAGACCATTTTTAGCCTAC 57.241 37.500 0.00 0.00 31.01 3.18
1822 1970 5.499004 TGTGAGACCATTTTTAGCCTACT 57.501 39.130 0.00 0.00 0.00 2.57
1823 1971 5.876357 TGTGAGACCATTTTTAGCCTACTT 58.124 37.500 0.00 0.00 0.00 2.24
1824 1972 5.705441 TGTGAGACCATTTTTAGCCTACTTG 59.295 40.000 0.00 0.00 0.00 3.16
1825 1973 5.705905 GTGAGACCATTTTTAGCCTACTTGT 59.294 40.000 0.00 0.00 0.00 3.16
1826 1974 6.877322 GTGAGACCATTTTTAGCCTACTTGTA 59.123 38.462 0.00 0.00 0.00 2.41
1827 1975 7.389607 GTGAGACCATTTTTAGCCTACTTGTAA 59.610 37.037 0.00 0.00 0.00 2.41
1828 1976 8.107095 TGAGACCATTTTTAGCCTACTTGTAAT 58.893 33.333 0.00 0.00 0.00 1.89
1829 1977 8.879427 AGACCATTTTTAGCCTACTTGTAATT 57.121 30.769 0.00 0.00 0.00 1.40
1830 1978 8.739972 AGACCATTTTTAGCCTACTTGTAATTG 58.260 33.333 0.00 0.00 0.00 2.32
1831 1979 8.644374 ACCATTTTTAGCCTACTTGTAATTGA 57.356 30.769 0.00 0.00 0.00 2.57
1832 1980 8.520351 ACCATTTTTAGCCTACTTGTAATTGAC 58.480 33.333 0.00 0.00 0.00 3.18
1833 1981 8.739972 CCATTTTTAGCCTACTTGTAATTGACT 58.260 33.333 0.00 0.00 0.00 3.41
1834 1982 9.774742 CATTTTTAGCCTACTTGTAATTGACTC 57.225 33.333 0.00 0.00 0.00 3.36
1835 1983 8.911918 TTTTTAGCCTACTTGTAATTGACTCA 57.088 30.769 0.00 0.00 0.00 3.41
1836 1984 7.900782 TTTAGCCTACTTGTAATTGACTCAC 57.099 36.000 0.00 0.00 0.00 3.51
1837 1985 4.495422 AGCCTACTTGTAATTGACTCACG 58.505 43.478 0.00 0.00 0.00 4.35
1838 1986 4.219944 AGCCTACTTGTAATTGACTCACGA 59.780 41.667 0.00 0.00 0.00 4.35
1839 1987 4.326548 GCCTACTTGTAATTGACTCACGAC 59.673 45.833 0.00 0.00 0.00 4.34
1840 1988 4.863131 CCTACTTGTAATTGACTCACGACC 59.137 45.833 0.00 0.00 0.00 4.79
1841 1989 4.330944 ACTTGTAATTGACTCACGACCA 57.669 40.909 0.00 0.00 0.00 4.02
1856 2004 2.948979 ACGACCAAACATTCTTTCTGCA 59.051 40.909 0.00 0.00 0.00 4.41
1857 2005 3.380004 ACGACCAAACATTCTTTCTGCAA 59.620 39.130 0.00 0.00 0.00 4.08
1865 2013 2.869233 TTCTTTCTGCAACCAAGTGC 57.131 45.000 0.00 0.00 45.15 4.40
1887 2035 3.386402 CCTCCCTAAGGTCTTTCAGCTAG 59.614 52.174 0.00 0.00 40.67 3.42
1888 2036 3.375699 TCCCTAAGGTCTTTCAGCTAGG 58.624 50.000 0.00 0.00 30.39 3.02
1889 2037 3.108376 CCCTAAGGTCTTTCAGCTAGGT 58.892 50.000 0.00 0.00 30.39 3.08
1890 2038 4.016851 TCCCTAAGGTCTTTCAGCTAGGTA 60.017 45.833 0.00 0.00 30.39 3.08
1891 2039 4.099727 CCCTAAGGTCTTTCAGCTAGGTAC 59.900 50.000 0.00 0.00 30.39 3.34
1892 2040 4.099727 CCTAAGGTCTTTCAGCTAGGTACC 59.900 50.000 2.73 2.73 30.39 3.34
1893 2041 3.185880 AGGTCTTTCAGCTAGGTACCA 57.814 47.619 15.94 0.00 0.00 3.25
1894 2042 3.100671 AGGTCTTTCAGCTAGGTACCAG 58.899 50.000 15.94 10.60 0.00 4.00
1895 2043 2.168728 GGTCTTTCAGCTAGGTACCAGG 59.831 54.545 15.94 7.23 0.00 4.45
1896 2044 3.097614 GTCTTTCAGCTAGGTACCAGGA 58.902 50.000 15.94 0.69 0.00 3.86
1897 2045 3.097614 TCTTTCAGCTAGGTACCAGGAC 58.902 50.000 15.94 0.00 0.00 3.85
1898 2046 2.615986 TTCAGCTAGGTACCAGGACA 57.384 50.000 15.94 0.00 0.00 4.02
1899 2047 2.615986 TCAGCTAGGTACCAGGACAA 57.384 50.000 15.94 0.00 0.00 3.18
1938 2086 2.360852 ATGCACTGGTCAGCAGCC 60.361 61.111 3.01 0.00 44.94 4.85
1939 2087 2.903635 ATGCACTGGTCAGCAGCCT 61.904 57.895 3.01 2.17 44.94 4.58
1940 2088 1.556373 ATGCACTGGTCAGCAGCCTA 61.556 55.000 3.01 0.00 44.94 3.93
1955 2103 1.964552 GCCTATGCTTGCACTGATCT 58.035 50.000 0.00 0.00 33.53 2.75
1966 2114 5.782047 CTTGCACTGATCTCTTATCCTAGG 58.218 45.833 0.82 0.82 0.00 3.02
1984 2132 5.104569 TCCTAGGTATTGCATGAATGTCACA 60.105 40.000 9.08 0.00 0.00 3.58
2003 2151 6.090763 TGTCACATTTAGTCAAACAGATAGCG 59.909 38.462 0.00 0.00 0.00 4.26
2049 2199 6.798427 TGAGAATCTATAAGAAGTGCCAGT 57.202 37.500 0.00 0.00 34.92 4.00
2063 2213 0.107017 GCCAGTGCACCAGGTATGAT 60.107 55.000 22.62 0.00 37.47 2.45
2079 2229 0.679640 TGATAGGTGCCGGCAAAAGG 60.680 55.000 34.66 0.00 0.00 3.11
2094 2244 4.432712 GCAAAAGGAACACAGAAACATGT 58.567 39.130 0.00 0.00 0.00 3.21
2130 2280 4.949856 ACACTTTCAATCTCAGTTGTTGGT 59.050 37.500 0.00 0.00 0.00 3.67
2306 2479 3.008049 ACCACCTATTCCAACTGAGACAC 59.992 47.826 0.00 0.00 0.00 3.67
2310 2483 6.352222 CCACCTATTCCAACTGAGACACTATT 60.352 42.308 0.00 0.00 0.00 1.73
2317 2490 9.838339 ATTCCAACTGAGACACTATTTATTAGG 57.162 33.333 0.00 0.00 31.68 2.69
2433 2616 5.975693 TTTACCCATGAGCCACTTTTAAG 57.024 39.130 0.00 0.00 0.00 1.85
2464 2647 8.321353 TCTGGAAACTGCTTGATTTTATCTCTA 58.679 33.333 0.00 0.00 0.00 2.43
2465 2648 8.862325 TGGAAACTGCTTGATTTTATCTCTAA 57.138 30.769 0.00 0.00 0.00 2.10
2466 2649 9.466497 TGGAAACTGCTTGATTTTATCTCTAAT 57.534 29.630 0.00 0.00 0.00 1.73
2627 2811 6.078456 ACATGTCTTCCATCCATTCCTAAA 57.922 37.500 0.00 0.00 0.00 1.85
2628 2812 6.676558 ACATGTCTTCCATCCATTCCTAAAT 58.323 36.000 0.00 0.00 0.00 1.40
2629 2813 6.774656 ACATGTCTTCCATCCATTCCTAAATC 59.225 38.462 0.00 0.00 0.00 2.17
2630 2814 5.694995 TGTCTTCCATCCATTCCTAAATCC 58.305 41.667 0.00 0.00 0.00 3.01
2631 2815 5.433051 TGTCTTCCATCCATTCCTAAATCCT 59.567 40.000 0.00 0.00 0.00 3.24
2632 2816 6.619437 TGTCTTCCATCCATTCCTAAATCCTA 59.381 38.462 0.00 0.00 0.00 2.94
2633 2817 7.128728 TGTCTTCCATCCATTCCTAAATCCTAA 59.871 37.037 0.00 0.00 0.00 2.69
2689 2873 6.256321 ACAATTCTGTTCAATTTTCTGTGTGC 59.744 34.615 0.00 0.00 28.57 4.57
2754 2938 2.357836 CTGGAGGCCAAGCACCAT 59.642 61.111 5.01 0.00 36.42 3.55
2880 3064 2.291741 GCTGTTTCTTGAGAAGGTGTGG 59.708 50.000 0.00 0.00 35.21 4.17
2909 3101 6.016276 CCCTTAAGTGTTGATTGTTAAGCTGT 60.016 38.462 0.97 0.00 33.11 4.40
3084 3279 0.609957 TCAATGTCAAGGGCAGGCAG 60.610 55.000 0.00 0.00 0.00 4.85
3263 3504 2.223144 CACACACACCAATCAGTTACCG 59.777 50.000 0.00 0.00 0.00 4.02
3317 3563 6.632909 TCTTTAGCCCAAACATCAATCAATG 58.367 36.000 0.00 0.00 0.00 2.82
3338 3584 9.607333 TCAATGAATCTTATATACTCCCTCTGT 57.393 33.333 0.00 0.00 0.00 3.41
3341 3587 8.423906 TGAATCTTATATACTCCCTCTGTTCC 57.576 38.462 0.00 0.00 0.00 3.62
3342 3588 7.455008 TGAATCTTATATACTCCCTCTGTTCCC 59.545 40.741 0.00 0.00 0.00 3.97
3343 3589 6.289482 TCTTATATACTCCCTCTGTTCCCA 57.711 41.667 0.00 0.00 0.00 4.37
3344 3590 6.689561 TCTTATATACTCCCTCTGTTCCCAA 58.310 40.000 0.00 0.00 0.00 4.12
3345 3591 7.136885 TCTTATATACTCCCTCTGTTCCCAAA 58.863 38.462 0.00 0.00 0.00 3.28
3346 3592 7.794683 TCTTATATACTCCCTCTGTTCCCAAAT 59.205 37.037 0.00 0.00 0.00 2.32
3347 3593 9.101325 CTTATATACTCCCTCTGTTCCCAAATA 57.899 37.037 0.00 0.00 0.00 1.40
3348 3594 9.629649 TTATATACTCCCTCTGTTCCCAAATAT 57.370 33.333 0.00 0.00 0.00 1.28
3350 3596 7.947782 ATACTCCCTCTGTTCCCAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
3351 3597 6.253946 ACTCCCTCTGTTCCCAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
3352 3598 5.731678 ACTCCCTCTGTTCCCAAATATAAGT 59.268 40.000 0.00 0.00 0.00 2.24
3353 3599 6.126739 ACTCCCTCTGTTCCCAAATATAAGTC 60.127 42.308 0.00 0.00 0.00 3.01
3354 3600 5.970640 TCCCTCTGTTCCCAAATATAAGTCT 59.029 40.000 0.00 0.00 0.00 3.24
3355 3601 6.447084 TCCCTCTGTTCCCAAATATAAGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
3356 3602 7.036863 TCCCTCTGTTCCCAAATATAAGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
3357 3603 7.283354 CCCTCTGTTCCCAAATATAAGTCTTTC 59.717 40.741 0.00 0.00 0.00 2.62
3358 3604 8.049721 CCTCTGTTCCCAAATATAAGTCTTTCT 58.950 37.037 0.00 0.00 0.00 2.52
3376 3622 9.693739 AGTCTTTCTAGAGATTCTATCAAGTGA 57.306 33.333 0.00 0.00 0.00 3.41
3377 3623 9.730420 GTCTTTCTAGAGATTCTATCAAGTGAC 57.270 37.037 0.00 0.00 0.00 3.67
3378 3624 9.693739 TCTTTCTAGAGATTCTATCAAGTGACT 57.306 33.333 0.00 0.00 0.00 3.41
3381 3627 9.907229 TTCTAGAGATTCTATCAAGTGACTACA 57.093 33.333 0.00 0.00 0.00 2.74
3385 3631 8.779303 AGAGATTCTATCAAGTGACTACATACG 58.221 37.037 0.00 0.00 0.00 3.06
3386 3632 8.678593 AGATTCTATCAAGTGACTACATACGA 57.321 34.615 0.00 0.00 0.00 3.43
3387 3633 9.121658 AGATTCTATCAAGTGACTACATACGAA 57.878 33.333 0.00 0.00 0.00 3.85
3388 3634 9.388346 GATTCTATCAAGTGACTACATACGAAG 57.612 37.037 0.00 0.00 0.00 3.79
3389 3635 6.726230 TCTATCAAGTGACTACATACGAAGC 58.274 40.000 0.00 0.00 0.00 3.86
3390 3636 4.776795 TCAAGTGACTACATACGAAGCA 57.223 40.909 0.00 0.00 0.00 3.91
3391 3637 5.128992 TCAAGTGACTACATACGAAGCAA 57.871 39.130 0.00 0.00 0.00 3.91
3392 3638 5.534407 TCAAGTGACTACATACGAAGCAAA 58.466 37.500 0.00 0.00 0.00 3.68
3393 3639 6.163476 TCAAGTGACTACATACGAAGCAAAT 58.837 36.000 0.00 0.00 0.00 2.32
3394 3640 6.649141 TCAAGTGACTACATACGAAGCAAATT 59.351 34.615 0.00 0.00 0.00 1.82
3395 3641 6.408858 AGTGACTACATACGAAGCAAATTG 57.591 37.500 0.00 0.00 0.00 2.32
3396 3642 6.163476 AGTGACTACATACGAAGCAAATTGA 58.837 36.000 0.00 0.00 0.00 2.57
3397 3643 6.311445 AGTGACTACATACGAAGCAAATTGAG 59.689 38.462 0.00 0.00 0.00 3.02
3398 3644 6.090898 GTGACTACATACGAAGCAAATTGAGT 59.909 38.462 0.00 0.00 0.00 3.41
3399 3645 6.090763 TGACTACATACGAAGCAAATTGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
3400 3646 5.932303 ACTACATACGAAGCAAATTGAGTGT 59.068 36.000 0.00 0.00 0.00 3.55
3401 3647 7.094631 ACTACATACGAAGCAAATTGAGTGTA 58.905 34.615 0.00 0.00 0.00 2.90
3402 3648 6.985188 ACATACGAAGCAAATTGAGTGTAT 57.015 33.333 0.00 0.00 0.00 2.29
3403 3649 7.005062 ACATACGAAGCAAATTGAGTGTATC 57.995 36.000 0.00 0.00 0.00 2.24
3404 3650 6.818644 ACATACGAAGCAAATTGAGTGTATCT 59.181 34.615 0.00 0.00 0.00 1.98
3405 3651 7.979537 ACATACGAAGCAAATTGAGTGTATCTA 59.020 33.333 0.00 0.00 0.00 1.98
3406 3652 6.648725 ACGAAGCAAATTGAGTGTATCTAC 57.351 37.500 0.00 0.00 0.00 2.59
3407 3653 6.163476 ACGAAGCAAATTGAGTGTATCTACA 58.837 36.000 0.00 0.00 0.00 2.74
3444 3690 9.955102 TGTCTACATACATCCGTATATTCTAGT 57.045 33.333 0.00 0.00 36.11 2.57
3446 3692 9.610705 TCTACATACATCCGTATATTCTAGTCC 57.389 37.037 0.00 0.00 36.11 3.85
3447 3693 9.392259 CTACATACATCCGTATATTCTAGTCCA 57.608 37.037 0.00 0.00 36.11 4.02
3448 3694 8.824756 ACATACATCCGTATATTCTAGTCCAT 57.175 34.615 0.00 0.00 36.11 3.41
3449 3695 9.256228 ACATACATCCGTATATTCTAGTCCATT 57.744 33.333 0.00 0.00 36.11 3.16
3452 3698 8.190326 ACATCCGTATATTCTAGTCCATTTGA 57.810 34.615 0.00 0.00 0.00 2.69
3453 3699 8.647796 ACATCCGTATATTCTAGTCCATTTGAA 58.352 33.333 0.00 0.00 0.00 2.69
3454 3700 9.489084 CATCCGTATATTCTAGTCCATTTGAAA 57.511 33.333 0.00 0.00 0.00 2.69
3456 3702 9.489084 TCCGTATATTCTAGTCCATTTGAAATG 57.511 33.333 10.84 10.84 0.00 2.32
3457 3703 9.273016 CCGTATATTCTAGTCCATTTGAAATGT 57.727 33.333 15.93 1.43 0.00 2.71
3487 3733 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3488 3734 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3489 3735 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3490 3736 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3580 3826 8.616076 GTCAGTTGGATGAGAAATCGATATTTT 58.384 33.333 0.00 0.00 35.41 1.82
3621 3868 9.495754 GCAGAATCAAATTAAGTTGCTACTTAG 57.504 33.333 18.00 9.07 45.11 2.18
3645 3892 5.065731 GCAACTTCTGATGAATCCGAGATTT 59.934 40.000 0.00 0.00 0.00 2.17
3649 3896 7.331026 ACTTCTGATGAATCCGAGATTTTACA 58.669 34.615 0.00 0.00 0.00 2.41
3650 3897 7.278868 ACTTCTGATGAATCCGAGATTTTACAC 59.721 37.037 0.00 0.00 0.00 2.90
3651 3898 6.878317 TCTGATGAATCCGAGATTTTACACT 58.122 36.000 1.45 0.00 0.00 3.55
3652 3899 6.758416 TCTGATGAATCCGAGATTTTACACTG 59.242 38.462 1.45 0.00 0.00 3.66
3653 3900 6.406370 TGATGAATCCGAGATTTTACACTGT 58.594 36.000 1.45 0.00 0.00 3.55
3677 3924 2.890945 ACTTGGTTTATGTGCCTGGTTC 59.109 45.455 0.00 0.00 0.00 3.62
3684 3931 2.496899 ATGTGCCTGGTTCTAAGTGG 57.503 50.000 0.00 0.00 0.00 4.00
3936 4227 1.806461 GCCAGCTGCCATGGATGATG 61.806 60.000 18.40 15.33 40.51 3.07
4004 4296 4.985538 TGGCAACAGAGAATCCTTACTTT 58.014 39.130 0.00 0.00 46.17 2.66
4025 4317 6.489361 ACTTTAAGGAGATGATTGATGATGCC 59.511 38.462 0.00 0.00 0.00 4.40
4028 4320 1.128136 GAGATGATTGATGATGCCGCG 59.872 52.381 0.00 0.00 0.00 6.46
4117 4409 4.851558 GGTAACTAAGTTTTCTGCGCAATG 59.148 41.667 13.05 0.00 0.00 2.82
4385 4695 7.637229 CCACATGAGTTTAATGAAGATAGCTG 58.363 38.462 0.00 0.00 0.00 4.24
4407 4717 2.026356 TGGCCACATTTAGCTGAGCTTA 60.026 45.455 14.14 0.00 40.44 3.09
4427 4737 5.800438 GCTTACCCTTTTAAGATCTTTTGCG 59.200 40.000 14.36 0.72 31.60 4.85
4534 4844 2.882170 TCGATGGCGAGAAGGAAGA 58.118 52.632 0.00 0.00 42.51 2.87
4535 4845 0.456221 TCGATGGCGAGAAGGAAGAC 59.544 55.000 0.00 0.00 42.51 3.01
4689 5003 9.519191 TCAATCCAAAGAAGAGATTTTGATACA 57.481 29.630 0.00 0.00 36.61 2.29
4732 5050 3.118629 TGCACCATAGGAACAGAGATGAC 60.119 47.826 0.00 0.00 0.00 3.06
4740 5058 3.073650 AGGAACAGAGATGACTTTTGCCT 59.926 43.478 0.00 0.00 0.00 4.75
4819 5175 0.814812 TGTGTTTTCCGGTTCCGACC 60.815 55.000 13.08 0.00 42.87 4.79
4848 5206 9.624697 TTTGAATCTGTTATGTGTATGAAAAGC 57.375 29.630 0.00 0.00 0.00 3.51
4903 5261 1.500512 GCGAAAGTGCACGGTGGTTA 61.501 55.000 12.01 0.00 34.15 2.85
4906 5264 0.820482 AAAGTGCACGGTGGTTACCC 60.820 55.000 12.01 0.00 44.53 3.69
5042 5415 5.522460 GTGACACTCTACAGCAGTACAAAAA 59.478 40.000 0.00 0.00 0.00 1.94
5045 5418 6.959361 ACACTCTACAGCAGTACAAAAATTG 58.041 36.000 0.00 0.00 0.00 2.32
5055 5428 5.051508 GCAGTACAAAAATTGAACAGCACAG 60.052 40.000 0.00 0.00 0.00 3.66
5072 5445 1.211949 ACAGTGCCCACATACCCATAC 59.788 52.381 0.82 0.00 0.00 2.39
5089 5462 4.576053 CCCATACACTCCACATAACACATG 59.424 45.833 0.00 0.00 0.00 3.21
5179 5563 5.936372 TCTCATGTCTTCAAGATGTTCCAAG 59.064 40.000 0.00 0.00 30.73 3.61
5189 5573 5.124936 TCAAGATGTTCCAAGCATCAATCTG 59.875 40.000 7.83 1.13 43.66 2.90
5278 5665 4.215399 TGATGTTTGAAGCTCCCTAAAACG 59.785 41.667 0.00 0.00 33.62 3.60
5300 5687 4.851558 CGAAGTAAATTTGCAGCAGGTTAC 59.148 41.667 9.04 13.34 0.00 2.50
5310 5697 1.195448 CAGCAGGTTACGCAAGAACTG 59.805 52.381 0.00 0.00 43.62 3.16
5516 5986 2.280628 CCTTTCCAGCATAGACCGTTC 58.719 52.381 0.00 0.00 0.00 3.95
5530 6014 8.918658 GCATAGACCGTTCGATTTGTATTTATA 58.081 33.333 0.00 0.00 0.00 0.98
5540 6024 5.445407 CGATTTGTATTTATATCCGGTGGCG 60.445 44.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 3.373565 CCCAACTCAAAGGCGCCC 61.374 66.667 26.15 5.07 0.00 6.13
131 132 2.387476 GAACCGTCCCTTGGGTCGTT 62.387 60.000 20.20 15.02 32.61 3.85
204 211 4.249661 AGGTGTTTTTCACGCAAAAATGT 58.750 34.783 8.41 0.00 44.12 2.71
230 237 0.249699 TGTGCCTCTCGCGAAAGAAA 60.250 50.000 11.91 0.00 42.08 2.52
233 240 0.798776 AATTGTGCCTCTCGCGAAAG 59.201 50.000 11.33 6.30 42.08 2.62
238 245 0.242017 AGCAAAATTGTGCCTCTCGC 59.758 50.000 17.19 0.00 46.14 5.03
249 256 3.005155 GTGCCTCTCACAGAAGCAAAATT 59.995 43.478 0.00 0.00 42.67 1.82
250 257 2.555757 GTGCCTCTCACAGAAGCAAAAT 59.444 45.455 0.00 0.00 42.67 1.82
331 349 3.909430 AGTAAAATCGTGTCTCTCGCAA 58.091 40.909 0.00 0.00 0.00 4.85
332 350 3.570926 AGTAAAATCGTGTCTCTCGCA 57.429 42.857 0.00 0.00 0.00 5.10
337 355 3.362831 TCGCGAAAGTAAAATCGTGTCTC 59.637 43.478 6.20 0.00 46.49 3.36
338 356 3.311106 TCGCGAAAGTAAAATCGTGTCT 58.689 40.909 6.20 0.00 46.49 3.41
343 361 2.285084 GCCTCTCGCGAAAGTAAAATCG 60.285 50.000 11.33 0.00 41.81 3.34
344 362 2.671396 TGCCTCTCGCGAAAGTAAAATC 59.329 45.455 11.33 0.00 42.08 2.17
346 364 1.796459 GTGCCTCTCGCGAAAGTAAAA 59.204 47.619 11.33 0.00 42.08 1.52
347 365 1.425412 GTGCCTCTCGCGAAAGTAAA 58.575 50.000 11.33 0.00 42.08 2.01
348 366 3.117589 GTGCCTCTCGCGAAAGTAA 57.882 52.632 11.33 0.00 42.08 2.24
356 374 1.725973 GCAAAAACGTGCCTCTCGC 60.726 57.895 0.00 0.00 38.66 5.03
357 375 0.307760 AAGCAAAAACGTGCCTCTCG 59.692 50.000 0.00 0.00 46.14 4.04
358 376 1.335051 GGAAGCAAAAACGTGCCTCTC 60.335 52.381 0.00 0.00 46.14 3.20
359 377 0.668535 GGAAGCAAAAACGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
360 378 0.660300 CGGAAGCAAAAACGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
361 379 1.358759 CGGAAGCAAAAACGTGCCT 59.641 52.632 0.00 0.00 46.14 4.75
362 380 3.916439 CGGAAGCAAAAACGTGCC 58.084 55.556 0.00 0.00 46.14 5.01
383 401 2.319472 GTGAAAGCAAAATCGTGCCTC 58.681 47.619 0.00 0.00 46.14 4.70
456 500 6.583050 CGCGGAAGGAAAAATAACATGTTTTA 59.417 34.615 17.78 0.00 0.00 1.52
461 505 2.851824 GCGCGGAAGGAAAAATAACATG 59.148 45.455 8.83 0.00 0.00 3.21
467 511 1.969589 ACGGCGCGGAAGGAAAAAT 60.970 52.632 22.76 0.00 0.00 1.82
509 569 5.957842 ACAAATCGTGCCTCTAATGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
578 641 7.329717 GCGTCGAGATATTCAAAATTAGATCCT 59.670 37.037 0.00 0.00 0.00 3.24
602 665 0.527600 TCATCGTCGGATTCCTTGCG 60.528 55.000 0.30 2.95 41.07 4.85
627 691 2.810650 ACCATGCGTCTAAATCTCGAC 58.189 47.619 0.00 0.00 0.00 4.20
689 757 2.668457 GTCATTCGTCGCAACTTGAGAT 59.332 45.455 0.00 0.00 0.00 2.75
692 760 1.525197 GTGTCATTCGTCGCAACTTGA 59.475 47.619 0.00 0.00 0.00 3.02
693 761 1.260297 TGTGTCATTCGTCGCAACTTG 59.740 47.619 0.00 0.00 0.00 3.16
704 772 0.239347 GCACTGCACCTGTGTCATTC 59.761 55.000 6.46 0.00 36.06 2.67
714 782 4.687215 TCTCAGCCGCACTGCACC 62.687 66.667 1.11 0.00 46.76 5.01
749 823 4.269523 TGTCCTGTGTGGCCCAGC 62.270 66.667 0.00 0.00 35.26 4.85
750 824 2.281761 GTGTCCTGTGTGGCCCAG 60.282 66.667 0.00 0.00 35.26 4.45
751 825 3.884774 GGTGTCCTGTGTGGCCCA 61.885 66.667 0.00 0.00 35.26 5.36
815 892 1.880894 GAAAAACCCTAGGTGCGGC 59.119 57.895 8.29 0.00 35.34 6.53
816 893 0.604511 ACGAAAAACCCTAGGTGCGG 60.605 55.000 8.29 0.00 35.34 5.69
820 897 1.134037 TGCACACGAAAAACCCTAGGT 60.134 47.619 8.29 0.00 37.65 3.08
958 1056 2.933834 CGGGGAAAGTCCAGGGGT 60.934 66.667 0.00 0.00 38.64 4.95
976 1074 2.959484 TTTCTCTGCCTGCCCGAGG 61.959 63.158 5.93 0.00 46.13 4.63
1100 1211 3.716539 TTCCGGGCGAGCGATTCTG 62.717 63.158 0.00 0.00 0.00 3.02
1141 1262 6.155393 TCCCTGTTAATGAACAAAACCAAACT 59.845 34.615 0.00 0.00 44.90 2.66
1289 1417 6.540205 CATAATCATCACAATCATAGCGTGG 58.460 40.000 0.00 0.00 0.00 4.94
1534 1682 6.776116 TGAACTACGGTATTATGGATCAGAGT 59.224 38.462 0.00 0.00 0.00 3.24
1648 1796 2.984562 TGATATTGTGCTTCGGCTTGA 58.015 42.857 0.00 0.00 42.37 3.02
1694 1842 6.127647 GCTTGATTGATTGGAGGTGTTGATTA 60.128 38.462 0.00 0.00 0.00 1.75
1728 1876 5.112686 CCTTCTATTCTCCGGTTTTCTCAG 58.887 45.833 0.00 0.00 0.00 3.35
1756 1904 5.428253 TGCCCTCTGTTCTGTATTTATGTC 58.572 41.667 0.00 0.00 0.00 3.06
1760 1908 4.227300 ACCATGCCCTCTGTTCTGTATTTA 59.773 41.667 0.00 0.00 0.00 1.40
1798 1946 6.485171 AGTAGGCTAAAAATGGTCTCACATT 58.515 36.000 0.00 0.00 42.56 2.71
1810 1958 8.780249 GTGAGTCAATTACAAGTAGGCTAAAAA 58.220 33.333 0.00 0.00 0.00 1.94
1811 1959 7.117236 CGTGAGTCAATTACAAGTAGGCTAAAA 59.883 37.037 0.00 0.00 0.00 1.52
1812 1960 6.588756 CGTGAGTCAATTACAAGTAGGCTAAA 59.411 38.462 0.00 0.00 0.00 1.85
1813 1961 6.071784 TCGTGAGTCAATTACAAGTAGGCTAA 60.072 38.462 0.00 0.00 0.00 3.09
1814 1962 5.416639 TCGTGAGTCAATTACAAGTAGGCTA 59.583 40.000 0.00 0.00 0.00 3.93
1815 1963 4.219944 TCGTGAGTCAATTACAAGTAGGCT 59.780 41.667 0.00 0.00 0.00 4.58
1816 1964 4.326548 GTCGTGAGTCAATTACAAGTAGGC 59.673 45.833 0.00 0.00 0.00 3.93
1817 1965 4.863131 GGTCGTGAGTCAATTACAAGTAGG 59.137 45.833 0.00 0.00 0.00 3.18
1818 1966 5.466819 TGGTCGTGAGTCAATTACAAGTAG 58.533 41.667 0.00 0.00 0.00 2.57
1819 1967 5.456548 TGGTCGTGAGTCAATTACAAGTA 57.543 39.130 0.00 0.00 0.00 2.24
1820 1968 4.330944 TGGTCGTGAGTCAATTACAAGT 57.669 40.909 0.00 0.00 0.00 3.16
1821 1969 5.007234 TGTTTGGTCGTGAGTCAATTACAAG 59.993 40.000 0.00 0.00 0.00 3.16
1822 1970 4.876679 TGTTTGGTCGTGAGTCAATTACAA 59.123 37.500 0.00 0.00 0.00 2.41
1823 1971 4.443621 TGTTTGGTCGTGAGTCAATTACA 58.556 39.130 0.00 0.00 0.00 2.41
1824 1972 5.607119 ATGTTTGGTCGTGAGTCAATTAC 57.393 39.130 0.00 0.00 0.00 1.89
1825 1973 5.995282 AGAATGTTTGGTCGTGAGTCAATTA 59.005 36.000 0.00 0.00 0.00 1.40
1826 1974 4.821805 AGAATGTTTGGTCGTGAGTCAATT 59.178 37.500 0.00 0.00 0.00 2.32
1827 1975 4.389374 AGAATGTTTGGTCGTGAGTCAAT 58.611 39.130 0.00 0.00 0.00 2.57
1828 1976 3.804036 AGAATGTTTGGTCGTGAGTCAA 58.196 40.909 0.00 0.00 0.00 3.18
1829 1977 3.469008 AGAATGTTTGGTCGTGAGTCA 57.531 42.857 0.00 0.00 0.00 3.41
1830 1978 4.511826 AGAAAGAATGTTTGGTCGTGAGTC 59.488 41.667 0.00 0.00 0.00 3.36
1831 1979 4.273480 CAGAAAGAATGTTTGGTCGTGAGT 59.727 41.667 0.00 0.00 0.00 3.41
1832 1980 4.776743 CAGAAAGAATGTTTGGTCGTGAG 58.223 43.478 0.00 0.00 0.00 3.51
1833 1981 3.003275 GCAGAAAGAATGTTTGGTCGTGA 59.997 43.478 0.00 0.00 0.00 4.35
1834 1982 3.243035 TGCAGAAAGAATGTTTGGTCGTG 60.243 43.478 0.00 0.00 0.00 4.35
1835 1983 2.948979 TGCAGAAAGAATGTTTGGTCGT 59.051 40.909 0.00 0.00 0.00 4.34
1836 1984 3.624326 TGCAGAAAGAATGTTTGGTCG 57.376 42.857 0.00 0.00 0.00 4.79
1837 1985 4.051237 GGTTGCAGAAAGAATGTTTGGTC 58.949 43.478 0.00 0.00 0.00 4.02
1838 1986 3.450457 TGGTTGCAGAAAGAATGTTTGGT 59.550 39.130 0.00 0.00 0.00 3.67
1839 1987 4.057406 TGGTTGCAGAAAGAATGTTTGG 57.943 40.909 0.00 0.00 0.00 3.28
1840 1988 5.005971 CACTTGGTTGCAGAAAGAATGTTTG 59.994 40.000 10.90 0.00 0.00 2.93
1841 1989 5.111293 CACTTGGTTGCAGAAAGAATGTTT 58.889 37.500 10.90 0.00 0.00 2.83
1856 2004 0.698818 CCTTAGGGAGGCACTTGGTT 59.301 55.000 0.00 0.00 41.55 3.67
1857 2005 2.387952 CCTTAGGGAGGCACTTGGT 58.612 57.895 0.00 0.00 41.55 3.67
1887 2035 6.296803 CCTATCCTTTATTTGTCCTGGTACC 58.703 44.000 4.43 4.43 0.00 3.34
1888 2036 6.100714 TCCCTATCCTTTATTTGTCCTGGTAC 59.899 42.308 0.00 0.00 0.00 3.34
1889 2037 6.214278 TCCCTATCCTTTATTTGTCCTGGTA 58.786 40.000 0.00 0.00 0.00 3.25
1890 2038 5.043762 TCCCTATCCTTTATTTGTCCTGGT 58.956 41.667 0.00 0.00 0.00 4.00
1891 2039 5.646692 TCCCTATCCTTTATTTGTCCTGG 57.353 43.478 0.00 0.00 0.00 4.45
1892 2040 6.423182 TGTTCCCTATCCTTTATTTGTCCTG 58.577 40.000 0.00 0.00 0.00 3.86
1893 2041 6.652205 TGTTCCCTATCCTTTATTTGTCCT 57.348 37.500 0.00 0.00 0.00 3.85
1894 2042 7.898014 ATTGTTCCCTATCCTTTATTTGTCC 57.102 36.000 0.00 0.00 0.00 4.02
1895 2043 9.403583 TGTATTGTTCCCTATCCTTTATTTGTC 57.596 33.333 0.00 0.00 0.00 3.18
1896 2044 9.936329 ATGTATTGTTCCCTATCCTTTATTTGT 57.064 29.630 0.00 0.00 0.00 2.83
1898 2046 8.860088 GCATGTATTGTTCCCTATCCTTTATTT 58.140 33.333 0.00 0.00 0.00 1.40
1899 2047 8.004215 TGCATGTATTGTTCCCTATCCTTTATT 58.996 33.333 0.00 0.00 0.00 1.40
1938 2086 5.638657 GGATAAGAGATCAGTGCAAGCATAG 59.361 44.000 0.00 0.00 0.00 2.23
1939 2087 5.306419 AGGATAAGAGATCAGTGCAAGCATA 59.694 40.000 0.00 0.00 0.00 3.14
1940 2088 4.102838 AGGATAAGAGATCAGTGCAAGCAT 59.897 41.667 0.00 0.00 0.00 3.79
1955 2103 7.977818 ACATTCATGCAATACCTAGGATAAGA 58.022 34.615 17.98 0.00 0.00 2.10
1966 2114 8.183536 TGACTAAATGTGACATTCATGCAATAC 58.816 33.333 11.70 0.00 0.00 1.89
1984 2132 5.744345 CGAGTCGCTATCTGTTTGACTAAAT 59.256 40.000 0.00 0.00 39.83 1.40
2003 2151 7.521529 TCAAGAATTCAAAATGTGATCGAGTC 58.478 34.615 8.44 0.00 35.70 3.36
2063 2213 0.891904 GTTCCTTTTGCCGGCACCTA 60.892 55.000 32.95 13.12 0.00 3.08
2079 2229 1.886542 GGGGGACATGTTTCTGTGTTC 59.113 52.381 0.00 0.00 0.00 3.18
2306 2479 6.155393 TGGGGCAACAAAACCCTAATAAATAG 59.845 38.462 0.00 0.00 46.19 1.73
2310 2483 3.835395 CTGGGGCAACAAAACCCTAATAA 59.165 43.478 0.00 0.00 46.19 1.40
2317 2490 0.532640 CAAGCTGGGGCAACAAAACC 60.533 55.000 0.00 0.00 41.70 3.27
2464 2647 5.398012 GGTTCCTGAAGTCTGGGCTATTATT 60.398 44.000 4.58 0.00 35.87 1.40
2465 2648 4.103311 GGTTCCTGAAGTCTGGGCTATTAT 59.897 45.833 4.58 0.00 35.87 1.28
2466 2649 3.454812 GGTTCCTGAAGTCTGGGCTATTA 59.545 47.826 4.58 0.00 35.87 0.98
2627 2811 4.956075 CCACCCAAAAGCTAACATTAGGAT 59.044 41.667 1.00 0.00 0.00 3.24
2628 2812 4.340617 CCACCCAAAAGCTAACATTAGGA 58.659 43.478 1.00 0.00 0.00 2.94
2629 2813 3.447229 CCCACCCAAAAGCTAACATTAGG 59.553 47.826 1.00 0.00 0.00 2.69
2630 2814 4.082245 CACCCACCCAAAAGCTAACATTAG 60.082 45.833 0.00 0.00 0.00 1.73
2631 2815 3.829601 CACCCACCCAAAAGCTAACATTA 59.170 43.478 0.00 0.00 0.00 1.90
2632 2816 2.632512 CACCCACCCAAAAGCTAACATT 59.367 45.455 0.00 0.00 0.00 2.71
2633 2817 2.247358 CACCCACCCAAAAGCTAACAT 58.753 47.619 0.00 0.00 0.00 2.71
2689 2873 4.455877 CAGCTGGTTTTTCCTAACCTACAG 59.544 45.833 5.57 0.00 46.28 2.74
2850 3034 3.580022 TCTCAAGAAACAGCCTGATCTCA 59.420 43.478 0.00 0.00 0.00 3.27
2880 3064 1.135402 CAATCAACACTTAAGGGCGCC 60.135 52.381 21.18 21.18 0.00 6.53
2909 3101 2.555325 CAGCTGCAAAAATGGAGACTGA 59.445 45.455 0.00 0.00 35.34 3.41
3084 3279 1.817099 CAGGTCATCCTCGCCTTGC 60.817 63.158 0.00 0.00 43.07 4.01
3263 3504 8.068977 TGCTAAATTCAATGCACAAATTTTGAC 58.931 29.630 15.81 7.83 35.07 3.18
3317 3563 7.455008 TGGGAACAGAGGGAGTATATAAGATTC 59.545 40.741 0.00 0.00 35.01 2.52
3327 3573 6.906901 ACTTATATTTGGGAACAGAGGGAGTA 59.093 38.462 0.00 0.00 44.54 2.59
3328 3574 5.731678 ACTTATATTTGGGAACAGAGGGAGT 59.268 40.000 0.00 0.00 44.54 3.85
3329 3575 6.100424 AGACTTATATTTGGGAACAGAGGGAG 59.900 42.308 0.00 0.00 44.54 4.30
3330 3576 5.970640 AGACTTATATTTGGGAACAGAGGGA 59.029 40.000 0.00 0.00 44.54 4.20
3331 3577 6.253946 AGACTTATATTTGGGAACAGAGGG 57.746 41.667 0.00 0.00 44.54 4.30
3332 3578 8.049721 AGAAAGACTTATATTTGGGAACAGAGG 58.950 37.037 0.00 0.00 44.54 3.69
3350 3596 9.693739 TCACTTGATAGAATCTCTAGAAAGACT 57.306 33.333 11.96 0.00 33.26 3.24
3351 3597 9.730420 GTCACTTGATAGAATCTCTAGAAAGAC 57.270 37.037 11.96 0.00 33.26 3.01
3352 3598 9.693739 AGTCACTTGATAGAATCTCTAGAAAGA 57.306 33.333 11.96 0.00 33.26 2.52
3355 3601 9.907229 TGTAGTCACTTGATAGAATCTCTAGAA 57.093 33.333 0.00 0.00 31.67 2.10
3359 3605 8.779303 CGTATGTAGTCACTTGATAGAATCTCT 58.221 37.037 0.00 0.00 0.00 3.10
3360 3606 8.775527 TCGTATGTAGTCACTTGATAGAATCTC 58.224 37.037 0.00 0.00 0.00 2.75
3361 3607 8.678593 TCGTATGTAGTCACTTGATAGAATCT 57.321 34.615 0.00 0.00 0.00 2.40
3362 3608 9.388346 CTTCGTATGTAGTCACTTGATAGAATC 57.612 37.037 0.00 0.00 0.00 2.52
3363 3609 7.863375 GCTTCGTATGTAGTCACTTGATAGAAT 59.137 37.037 0.00 0.00 0.00 2.40
3364 3610 7.148137 TGCTTCGTATGTAGTCACTTGATAGAA 60.148 37.037 0.00 0.00 0.00 2.10
3365 3611 6.317893 TGCTTCGTATGTAGTCACTTGATAGA 59.682 38.462 0.00 0.00 0.00 1.98
3366 3612 6.495706 TGCTTCGTATGTAGTCACTTGATAG 58.504 40.000 0.00 0.00 0.00 2.08
3367 3613 6.445357 TGCTTCGTATGTAGTCACTTGATA 57.555 37.500 0.00 0.00 0.00 2.15
3368 3614 5.324784 TGCTTCGTATGTAGTCACTTGAT 57.675 39.130 0.00 0.00 0.00 2.57
3369 3615 4.776795 TGCTTCGTATGTAGTCACTTGA 57.223 40.909 0.00 0.00 0.00 3.02
3370 3616 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
3371 3617 6.649141 TCAATTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
3372 3618 6.163476 TCAATTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
3373 3619 6.090898 ACTCAATTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
3374 3620 6.090763 CACTCAATTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
3375 3621 6.090898 ACACTCAATTTGCTTCGTATGTAGTC 59.909 38.462 0.00 0.00 0.00 2.59
3376 3622 5.932303 ACACTCAATTTGCTTCGTATGTAGT 59.068 36.000 0.00 0.00 0.00 2.73
3377 3623 6.408858 ACACTCAATTTGCTTCGTATGTAG 57.591 37.500 0.00 0.00 0.00 2.74
3378 3624 7.979537 AGATACACTCAATTTGCTTCGTATGTA 59.020 33.333 0.00 0.00 0.00 2.29
3379 3625 6.818644 AGATACACTCAATTTGCTTCGTATGT 59.181 34.615 0.00 0.00 0.00 2.29
3380 3626 7.239166 AGATACACTCAATTTGCTTCGTATG 57.761 36.000 0.00 0.00 0.00 2.39
3381 3627 7.979537 TGTAGATACACTCAATTTGCTTCGTAT 59.020 33.333 0.00 0.00 0.00 3.06
3382 3628 7.317390 TGTAGATACACTCAATTTGCTTCGTA 58.683 34.615 0.00 0.00 0.00 3.43
3383 3629 6.163476 TGTAGATACACTCAATTTGCTTCGT 58.837 36.000 0.00 0.00 0.00 3.85
3384 3630 6.647212 TGTAGATACACTCAATTTGCTTCG 57.353 37.500 0.00 0.00 0.00 3.79
3418 3664 9.955102 ACTAGAATATACGGATGTATGTAGACA 57.045 33.333 0.00 0.00 41.37 3.41
3420 3666 9.610705 GGACTAGAATATACGGATGTATGTAGA 57.389 37.037 0.00 0.00 41.37 2.59
3421 3667 9.392259 TGGACTAGAATATACGGATGTATGTAG 57.608 37.037 0.00 0.00 41.37 2.74
3422 3668 9.916360 ATGGACTAGAATATACGGATGTATGTA 57.084 33.333 0.00 0.00 41.37 2.29
3423 3669 8.824756 ATGGACTAGAATATACGGATGTATGT 57.175 34.615 0.00 0.00 41.37 2.29
3426 3672 9.304335 TCAAATGGACTAGAATATACGGATGTA 57.696 33.333 0.00 0.00 34.45 2.29
3427 3673 8.190326 TCAAATGGACTAGAATATACGGATGT 57.810 34.615 0.00 0.00 0.00 3.06
3428 3674 9.489084 TTTCAAATGGACTAGAATATACGGATG 57.511 33.333 0.00 0.00 0.00 3.51
3430 3676 9.489084 CATTTCAAATGGACTAGAATATACGGA 57.511 33.333 1.73 0.00 0.00 4.69
3431 3677 9.273016 ACATTTCAAATGGACTAGAATATACGG 57.727 33.333 14.70 0.00 0.00 4.02
3461 3707 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3462 3708 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3463 3709 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3464 3710 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3465 3711 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3466 3712 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3467 3713 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3468 3714 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3471 3717 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3472 3718 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
3473 3719 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
3474 3720 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
3475 3721 7.441903 AAAAATATACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
3476 3722 8.591072 CATAAAAATATACTCCCTCCGTTCCTA 58.409 37.037 0.00 0.00 0.00 2.94
3477 3723 5.970501 AAAAATATACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
3478 3724 7.387122 GTCATAAAAATATACTCCCTCCGTTCC 59.613 40.741 0.00 0.00 0.00 3.62
3479 3725 7.929785 TGTCATAAAAATATACTCCCTCCGTTC 59.070 37.037 0.00 0.00 0.00 3.95
3480 3726 7.798071 TGTCATAAAAATATACTCCCTCCGTT 58.202 34.615 0.00 0.00 0.00 4.44
3481 3727 7.369551 TGTCATAAAAATATACTCCCTCCGT 57.630 36.000 0.00 0.00 0.00 4.69
3482 3728 8.094548 TGATGTCATAAAAATATACTCCCTCCG 58.905 37.037 0.00 0.00 0.00 4.63
3483 3729 9.793259 TTGATGTCATAAAAATATACTCCCTCC 57.207 33.333 0.00 0.00 0.00 4.30
3621 3868 3.525537 TCTCGGATTCATCAGAAGTTGC 58.474 45.455 0.00 0.00 37.14 4.17
3637 3884 6.204108 ACCAAGTTAACAGTGTAAAATCTCGG 59.796 38.462 8.61 0.00 0.00 4.63
3645 3892 7.419204 GCACATAAACCAAGTTAACAGTGTAA 58.581 34.615 8.61 0.00 0.00 2.41
3649 3896 5.009610 CAGGCACATAAACCAAGTTAACAGT 59.990 40.000 8.61 0.00 0.00 3.55
3650 3897 5.460646 CAGGCACATAAACCAAGTTAACAG 58.539 41.667 8.61 0.00 0.00 3.16
3651 3898 4.279671 CCAGGCACATAAACCAAGTTAACA 59.720 41.667 8.61 0.00 0.00 2.41
3652 3899 4.279922 ACCAGGCACATAAACCAAGTTAAC 59.720 41.667 0.00 0.00 0.00 2.01
3653 3900 4.475345 ACCAGGCACATAAACCAAGTTAA 58.525 39.130 0.00 0.00 0.00 2.01
3677 3924 9.988815 AATATAAGCTTGATACAGTCCACTTAG 57.011 33.333 9.86 0.00 0.00 2.18
3684 3931 8.147642 AGCAACAATATAAGCTTGATACAGTC 57.852 34.615 9.86 0.00 32.52 3.51
3936 4227 7.211966 TCCTTATAGCGTCTTTACTATGACC 57.788 40.000 0.00 0.00 31.64 4.02
4004 4296 4.572909 CGGCATCATCAATCATCTCCTTA 58.427 43.478 0.00 0.00 0.00 2.69
4025 4317 0.312416 CCTCTTCAGGTCTATCCGCG 59.688 60.000 0.00 0.00 41.99 6.46
4055 4347 7.717875 AGTGTAGCCAACTATACAAAAAGACAA 59.282 33.333 3.35 0.00 41.57 3.18
4117 4409 1.269257 GCTGTTTCCTTCCACTGCAAC 60.269 52.381 0.00 0.00 37.68 4.17
4150 4442 5.240623 CCGCATGTAGGCCATAAATTCTTTA 59.759 40.000 5.01 0.00 30.71 1.85
4385 4695 0.453390 GCTCAGCTAAATGTGGCCAC 59.547 55.000 29.67 29.67 0.00 5.01
4407 4717 5.784578 AACGCAAAAGATCTTAAAAGGGT 57.215 34.783 8.75 10.17 0.00 4.34
4427 4737 6.569801 GCCAGTTCATAAGTTGGTTAGGAAAC 60.570 42.308 0.00 0.00 41.74 2.78
4499 4809 1.375908 GAGCAGCGTGTTCATCCCA 60.376 57.895 0.00 0.00 0.00 4.37
4533 4843 2.429739 GGAACCACCGTCGTCGTC 60.430 66.667 0.71 0.00 35.01 4.20
4534 4844 3.203546 CTGGAACCACCGTCGTCGT 62.204 63.158 0.71 0.00 42.61 4.34
4535 4845 2.430244 CTGGAACCACCGTCGTCG 60.430 66.667 0.00 0.00 42.61 5.12
4689 5003 5.359576 TGCACAATTGGTTCAGTTTCTAGTT 59.640 36.000 10.83 0.00 0.00 2.24
4732 5050 2.555757 ACTGCTGCTTCTAAGGCAAAAG 59.444 45.455 0.00 0.00 39.30 2.27
4740 5058 3.820557 AGGACAAAACTGCTGCTTCTAA 58.179 40.909 0.00 0.00 0.00 2.10
4819 5175 7.864108 TCATACACATAACAGATTCAAAGGG 57.136 36.000 0.00 0.00 0.00 3.95
4848 5206 7.766283 TCATACTCTCATACTCAACAGAACAG 58.234 38.462 0.00 0.00 0.00 3.16
4903 5261 2.158755 GGAGATCGATGTTGGAATGGGT 60.159 50.000 0.54 0.00 0.00 4.51
4906 5264 2.541346 CGTGGAGATCGATGTTGGAATG 59.459 50.000 0.54 0.00 0.00 2.67
5015 5384 3.309961 ACTGCTGTAGAGTGTCACATG 57.690 47.619 5.62 0.00 0.00 3.21
5016 5385 3.826729 TGTACTGCTGTAGAGTGTCACAT 59.173 43.478 5.62 0.00 0.00 3.21
5017 5386 3.219281 TGTACTGCTGTAGAGTGTCACA 58.781 45.455 5.62 0.00 0.00 3.58
5018 5387 3.917329 TGTACTGCTGTAGAGTGTCAC 57.083 47.619 3.37 0.00 0.00 3.67
5029 5402 5.565723 GCTGTTCAATTTTTGTACTGCTG 57.434 39.130 16.08 0.00 45.48 4.41
5042 5415 0.467844 TGGGCACTGTGCTGTTCAAT 60.468 50.000 29.54 0.00 44.28 2.57
5045 5418 1.174712 ATGTGGGCACTGTGCTGTTC 61.175 55.000 29.54 18.05 44.28 3.18
5055 5428 1.211949 AGTGTATGGGTATGTGGGCAC 59.788 52.381 0.00 0.00 0.00 5.01
5072 5445 2.679837 GGAGCATGTGTTATGTGGAGTG 59.320 50.000 0.00 0.00 0.00 3.51
5089 5462 1.098050 CAGGTTGCCTGTAATGGAGC 58.902 55.000 6.99 0.00 45.82 4.70
5179 5563 0.749049 GAAAGGGCCCAGATTGATGC 59.251 55.000 27.56 0.08 0.00 3.91
5189 5573 0.891373 GCTTCTTGAAGAAAGGGCCC 59.109 55.000 16.46 16.46 33.19 5.80
5260 5647 4.457466 ACTTCGTTTTAGGGAGCTTCAAA 58.543 39.130 0.00 0.00 0.00 2.69
5278 5665 4.851558 CGTAACCTGCTGCAAATTTACTTC 59.148 41.667 18.10 2.26 0.00 3.01
5300 5687 4.051922 AGTAGTTCAGTTCAGTTCTTGCG 58.948 43.478 0.00 0.00 0.00 4.85
5310 5697 7.113544 GCAGTTGCAAATTTAGTAGTTCAGTTC 59.886 37.037 0.00 0.00 41.59 3.01
5490 5960 1.490490 TCTATGCTGGAAAGGGCGATT 59.510 47.619 0.00 0.00 0.00 3.34
5516 5986 5.445407 CGCCACCGGATATAAATACAAATCG 60.445 44.000 9.46 0.00 0.00 3.34
5530 6014 4.552365 CATGCCTCGCCACCGGAT 62.552 66.667 9.46 0.00 34.56 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.