Multiple sequence alignment - TraesCS5B01G295300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G295300 chr5B 100.000 3953 0 0 1 3953 479205941 479201989 0.000000e+00 7300.0
1 TraesCS5B01G295300 chr5B 82.910 708 113 5 163 868 74429765 74430466 7.210000e-177 630.0
2 TraesCS5B01G295300 chr5B 83.951 567 86 4 156 721 548223292 548222730 4.490000e-149 538.0
3 TraesCS5B01G295300 chr5D 89.082 3673 269 59 1 3641 398911055 398907483 0.000000e+00 4440.0
4 TraesCS5B01G295300 chr7A 80.777 1878 267 58 933 2792 12117368 12115567 0.000000e+00 1382.0
5 TraesCS5B01G295300 chr7A 87.875 800 83 10 2279 3073 612992230 612991440 0.000000e+00 928.0
6 TraesCS5B01G295300 chr7A 84.988 433 65 0 998 1430 612993171 612992739 1.300000e-119 440.0
7 TraesCS5B01G295300 chr7A 89.754 244 23 2 2781 3023 12101501 12101259 1.070000e-80 311.0
8 TraesCS5B01G295300 chr7A 84.722 72 6 4 1424 1495 39305948 39305882 2.550000e-07 67.6
9 TraesCS5B01G295300 chr5A 87.625 1196 111 20 1955 3145 503952003 503953166 0.000000e+00 1354.0
10 TraesCS5B01G295300 chr5A 87.145 599 71 4 933 1529 503950660 503951254 0.000000e+00 675.0
11 TraesCS5B01G295300 chr7D 88.662 785 84 4 2236 3016 532900558 532899775 0.000000e+00 952.0
12 TraesCS5B01G295300 chr7D 87.421 787 93 6 2235 3016 533433578 533432793 0.000000e+00 900.0
13 TraesCS5B01G295300 chr7D 84.488 722 102 8 146 863 253157659 253158374 0.000000e+00 704.0
14 TraesCS5B01G295300 chr7D 81.894 718 118 9 152 864 249441325 249440615 2.630000e-166 595.0
15 TraesCS5B01G295300 chr7D 81.921 531 87 6 998 1527 533434518 533433996 1.300000e-119 440.0
16 TraesCS5B01G295300 chr7D 84.651 430 66 0 1001 1430 532901470 532901041 2.820000e-116 429.0
17 TraesCS5B01G295300 chr7D 85.849 106 10 4 1424 1529 316750612 316750712 1.500000e-19 108.0
18 TraesCS5B01G295300 chr7B 86.659 847 95 14 2235 3073 573262445 573261609 0.000000e+00 922.0
19 TraesCS5B01G295300 chr7B 82.789 674 103 11 163 832 255036385 255037049 1.220000e-164 590.0
20 TraesCS5B01G295300 chr7B 82.109 531 86 5 998 1527 573263385 573262863 2.800000e-121 446.0
21 TraesCS5B01G295300 chr7B 95.714 210 9 0 3744 3953 464539691 464539900 4.890000e-89 339.0
22 TraesCS5B01G295300 chr1D 85.337 682 95 2 152 832 375982698 375983375 0.000000e+00 701.0
23 TraesCS5B01G295300 chr2D 83.631 672 97 8 153 824 9584342 9583684 1.560000e-173 619.0
24 TraesCS5B01G295300 chr3D 85.192 547 81 0 163 709 536895954 536896500 2.670000e-156 562.0
25 TraesCS5B01G295300 chr3D 88.793 116 12 1 17 131 96210352 96210467 1.480000e-29 141.0
26 TraesCS5B01G295300 chr2B 80.769 728 124 12 146 868 572585006 572585722 4.460000e-154 555.0
27 TraesCS5B01G295300 chr6D 80.882 680 124 5 2284 2959 72229911 72229234 7.520000e-147 531.0
28 TraesCS5B01G295300 chr6B 79.772 702 136 5 2284 2981 146838513 146837814 4.560000e-139 505.0
29 TraesCS5B01G295300 chr6B 94.860 214 10 1 3741 3953 583189238 583189025 2.280000e-87 333.0
30 TraesCS5B01G295300 chr6A 99.522 209 1 0 3745 3953 377856412 377856204 8.020000e-102 381.0
31 TraesCS5B01G295300 chr6A 85.075 134 19 1 4 136 499589228 499589361 6.890000e-28 135.0
32 TraesCS5B01G295300 chr4B 98.104 211 4 0 3743 3953 246657499 246657709 6.240000e-98 368.0
33 TraesCS5B01G295300 chr4B 95.238 210 10 0 3744 3953 418510721 418510930 2.280000e-87 333.0
34 TraesCS5B01G295300 chr4A 96.172 209 8 0 3745 3953 672690752 672690544 3.780000e-90 342.0
35 TraesCS5B01G295300 chr4A 96.172 209 8 0 3745 3953 672836030 672835822 3.780000e-90 342.0
36 TraesCS5B01G295300 chr4A 86.916 107 8 3 1424 1529 460277073 460276972 8.980000e-22 115.0
37 TraesCS5B01G295300 chr3B 95.714 210 9 0 3744 3953 464610212 464610421 4.890000e-89 339.0
38 TraesCS5B01G295300 chr4D 94.836 213 11 0 3741 3953 92304260 92304472 2.280000e-87 333.0
39 TraesCS5B01G295300 chr1A 84.722 72 6 4 1424 1495 67010439 67010505 2.550000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G295300 chr5B 479201989 479205941 3952 True 7300.0 7300 100.0000 1 3953 1 chr5B.!!$R1 3952
1 TraesCS5B01G295300 chr5B 74429765 74430466 701 False 630.0 630 82.9100 163 868 1 chr5B.!!$F1 705
2 TraesCS5B01G295300 chr5B 548222730 548223292 562 True 538.0 538 83.9510 156 721 1 chr5B.!!$R2 565
3 TraesCS5B01G295300 chr5D 398907483 398911055 3572 True 4440.0 4440 89.0820 1 3641 1 chr5D.!!$R1 3640
4 TraesCS5B01G295300 chr7A 12115567 12117368 1801 True 1382.0 1382 80.7770 933 2792 1 chr7A.!!$R2 1859
5 TraesCS5B01G295300 chr7A 612991440 612993171 1731 True 684.0 928 86.4315 998 3073 2 chr7A.!!$R4 2075
6 TraesCS5B01G295300 chr5A 503950660 503953166 2506 False 1014.5 1354 87.3850 933 3145 2 chr5A.!!$F1 2212
7 TraesCS5B01G295300 chr7D 253157659 253158374 715 False 704.0 704 84.4880 146 863 1 chr7D.!!$F1 717
8 TraesCS5B01G295300 chr7D 532899775 532901470 1695 True 690.5 952 86.6565 1001 3016 2 chr7D.!!$R2 2015
9 TraesCS5B01G295300 chr7D 533432793 533434518 1725 True 670.0 900 84.6710 998 3016 2 chr7D.!!$R3 2018
10 TraesCS5B01G295300 chr7D 249440615 249441325 710 True 595.0 595 81.8940 152 864 1 chr7D.!!$R1 712
11 TraesCS5B01G295300 chr7B 573261609 573263385 1776 True 684.0 922 84.3840 998 3073 2 chr7B.!!$R1 2075
12 TraesCS5B01G295300 chr7B 255036385 255037049 664 False 590.0 590 82.7890 163 832 1 chr7B.!!$F1 669
13 TraesCS5B01G295300 chr1D 375982698 375983375 677 False 701.0 701 85.3370 152 832 1 chr1D.!!$F1 680
14 TraesCS5B01G295300 chr2D 9583684 9584342 658 True 619.0 619 83.6310 153 824 1 chr2D.!!$R1 671
15 TraesCS5B01G295300 chr3D 536895954 536896500 546 False 562.0 562 85.1920 163 709 1 chr3D.!!$F2 546
16 TraesCS5B01G295300 chr2B 572585006 572585722 716 False 555.0 555 80.7690 146 868 1 chr2B.!!$F1 722
17 TraesCS5B01G295300 chr6D 72229234 72229911 677 True 531.0 531 80.8820 2284 2959 1 chr6D.!!$R1 675
18 TraesCS5B01G295300 chr6B 146837814 146838513 699 True 505.0 505 79.7720 2284 2981 1 chr6B.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 499 0.467384 AGATCCTCCATGCCTTCACG 59.533 55.000 0.00 0.0 0.00 4.35 F
500 505 0.982852 TCCATGCCTTCACGGGAGAT 60.983 55.000 0.00 0.0 36.14 2.75 F
889 907 1.049289 AGGGCGAGGGGTGATTCTAC 61.049 60.000 0.00 0.0 0.00 2.59 F
1143 1167 1.203052 TCTTACGGGGTAGTTTGCTCG 59.797 52.381 0.00 0.0 0.00 5.03 F
2699 3158 0.247185 AAATCCCTTTCGTACGCCGA 59.753 50.000 11.24 1.3 45.66 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2577 0.687354 AAATGCTCGAGTCCAGGTGT 59.313 50.0 15.13 0.0 0.00 4.16 R
2444 2903 1.082117 CCAGCGGGTGACAACGTATC 61.082 60.0 9.09 0.0 0.00 2.24 R
2571 3030 0.254747 TTAGGCAATCGGTTCCTGGG 59.745 55.0 9.00 0.0 0.00 4.45 R
2734 3193 0.755686 AGATCAATGGCGAGAGGGTC 59.244 55.0 0.00 0.0 0.00 4.46 R
3697 4187 0.536724 TGTGTGCTGATCGCCATACT 59.463 50.0 11.58 0.0 38.05 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.828925 GGCGCACTCTCAGAGGCC 62.829 72.222 10.83 5.62 33.35 5.19
35 36 3.753434 CGCACTCTCAGAGGCCGT 61.753 66.667 6.64 0.00 33.35 5.68
51 52 2.357034 GTCGCTGCCGTCTTCCAA 60.357 61.111 0.00 0.00 35.54 3.53
67 68 2.034878 TCCAACGATCCATCTCCAGAG 58.965 52.381 0.00 0.00 0.00 3.35
68 69 1.539929 CCAACGATCCATCTCCAGAGC 60.540 57.143 0.00 0.00 0.00 4.09
99 101 4.335647 CCGACCTTGCCTGGCTGT 62.336 66.667 21.03 14.04 0.00 4.40
106 108 2.842394 CTTGCCTGGCTGTCGTCGAT 62.842 60.000 21.03 0.00 0.00 3.59
115 117 2.048597 GTCGTCGATGCCACCACA 60.049 61.111 0.00 0.00 0.00 4.17
116 118 2.094659 GTCGTCGATGCCACCACAG 61.095 63.158 0.00 0.00 0.00 3.66
124 126 2.740055 GCCACCACAGCGTCAGAG 60.740 66.667 0.00 0.00 0.00 3.35
134 136 2.338620 CGTCAGAGAACGCCACCA 59.661 61.111 0.00 0.00 35.64 4.17
135 137 1.079819 CGTCAGAGAACGCCACCAT 60.080 57.895 0.00 0.00 35.64 3.55
136 138 1.354337 CGTCAGAGAACGCCACCATG 61.354 60.000 0.00 0.00 35.64 3.66
161 163 3.611433 GCATTTAGCACCGCTCTTG 57.389 52.632 0.00 0.00 44.79 3.02
199 201 3.164028 GCACTTGCTCCAAAACGAC 57.836 52.632 0.00 0.00 38.21 4.34
228 230 0.538977 AGGGAGAACGACACCGAAGA 60.539 55.000 0.00 0.00 39.50 2.87
261 263 4.573900 GTTCGATCCGGTAGACCTAGATA 58.426 47.826 0.00 0.00 30.01 1.98
264 266 5.911752 TCGATCCGGTAGACCTAGATATAC 58.088 45.833 0.00 0.00 30.01 1.47
350 353 0.737715 GATGTCAGAGACACCGCCAC 60.738 60.000 1.43 0.00 45.65 5.01
357 360 4.388499 GACACCGCCACCATCCGT 62.388 66.667 0.00 0.00 0.00 4.69
391 394 2.548295 GCGCGGGTTTCACCAGAAA 61.548 57.895 8.83 0.00 41.02 2.52
397 400 4.167597 TTTCACCAGAAACCGCCC 57.832 55.556 0.00 0.00 38.76 6.13
460 465 2.809119 CCATAAATACGTATGCCGCCAA 59.191 45.455 9.24 0.00 41.42 4.52
468 473 0.944386 GTATGCCGCCAATGGTACTG 59.056 55.000 0.00 0.00 0.00 2.74
494 499 0.467384 AGATCCTCCATGCCTTCACG 59.533 55.000 0.00 0.00 0.00 4.35
499 504 1.612146 TCCATGCCTTCACGGGAGA 60.612 57.895 0.00 0.00 36.14 3.71
500 505 0.982852 TCCATGCCTTCACGGGAGAT 60.983 55.000 0.00 0.00 36.14 2.75
588 593 2.755064 CCGCCATGCCAACCATCA 60.755 61.111 0.00 0.00 29.71 3.07
800 815 2.406452 CTTTCGCTGTGGGTTGTGGC 62.406 60.000 0.00 0.00 0.00 5.01
832 847 1.771746 GGATCTGATCCCCCTGGCA 60.772 63.158 23.45 0.00 43.88 4.92
837 852 3.564218 GATCCCCCTGGCATCGCT 61.564 66.667 0.00 0.00 0.00 4.93
887 905 2.041265 AGGGCGAGGGGTGATTCT 59.959 61.111 0.00 0.00 0.00 2.40
889 907 1.049289 AGGGCGAGGGGTGATTCTAC 61.049 60.000 0.00 0.00 0.00 2.59
899 917 6.464465 CGAGGGGTGATTCTACAATTTCCTAT 60.464 42.308 0.00 0.00 0.00 2.57
902 920 7.060421 GGGGTGATTCTACAATTTCCTATCAA 58.940 38.462 0.00 0.00 0.00 2.57
903 921 7.559897 GGGGTGATTCTACAATTTCCTATCAAA 59.440 37.037 0.00 0.00 0.00 2.69
904 922 8.966868 GGGTGATTCTACAATTTCCTATCAAAA 58.033 33.333 0.00 0.00 0.00 2.44
927 945 6.595772 ATCAATTGATAGCACGAAAGACTC 57.404 37.500 19.42 0.00 32.01 3.36
940 958 5.289675 CACGAAAGACTCTACATTCCATCAC 59.710 44.000 0.00 0.00 0.00 3.06
946 964 5.593909 AGACTCTACATTCCATCACTCTCAG 59.406 44.000 0.00 0.00 0.00 3.35
975 993 8.335532 TGGAATTGTAACTCTATGTTTCCTTG 57.664 34.615 0.00 0.00 39.89 3.61
1012 1032 7.151308 ACAAAAACATAAAATGGCGAAGATGA 58.849 30.769 0.00 0.00 33.60 2.92
1039 1062 4.492604 CGAAGGGCAAGGGAAACA 57.507 55.556 0.00 0.00 0.00 2.83
1040 1063 2.257353 CGAAGGGCAAGGGAAACAG 58.743 57.895 0.00 0.00 0.00 3.16
1143 1167 1.203052 TCTTACGGGGTAGTTTGCTCG 59.797 52.381 0.00 0.00 0.00 5.03
1344 1370 3.489355 TGTCTACTTGGTGTCCGAACTA 58.511 45.455 0.00 0.00 0.00 2.24
1379 1405 1.859703 GCAGAAGATCATCAGCTCGTG 59.140 52.381 7.95 0.00 0.00 4.35
1416 1442 4.853468 TGACCACTGCCAATATTTCCTA 57.147 40.909 0.00 0.00 0.00 2.94
1431 1457 8.950210 CAATATTTCCTATTTCAGGTATGCGAT 58.050 33.333 0.00 0.00 45.71 4.58
1458 1484 8.753133 AGTCACCTCTTCTTTTTCATTCTTTTT 58.247 29.630 0.00 0.00 0.00 1.94
1540 1572 8.862325 TTAGTTCATTCACACCTCATGTTATT 57.138 30.769 0.00 0.00 40.64 1.40
1636 1668 1.694696 GGCTATTCTTCCTCCCGACAT 59.305 52.381 0.00 0.00 0.00 3.06
1684 1727 4.348863 ACCTTCATCTAAGCTATGCCTG 57.651 45.455 0.00 0.00 33.49 4.85
1685 1728 3.072944 CCTTCATCTAAGCTATGCCTGC 58.927 50.000 0.00 0.00 33.49 4.85
1727 1770 3.147629 TCTATTCTAGACGCCTAGGTGC 58.852 50.000 22.51 14.55 42.06 5.01
1758 1807 6.100004 TGGTGAGATCTTGTTTAATCGAGTC 58.900 40.000 0.00 0.25 0.00 3.36
1928 1983 2.154462 AGAAGCACCGGTCAATTTCAG 58.846 47.619 2.59 0.00 0.00 3.02
1941 1996 6.590292 CGGTCAATTTCAGTATCTGTAACTGT 59.410 38.462 10.41 0.00 43.88 3.55
1942 1997 7.758076 CGGTCAATTTCAGTATCTGTAACTGTA 59.242 37.037 10.41 1.48 43.88 2.74
2354 2813 3.173151 TGCATAGAGACCTGAAACCAGA 58.827 45.455 0.00 0.00 33.56 3.86
2361 2820 3.815962 GAGACCTGAAACCAGAAAACCTC 59.184 47.826 0.00 0.00 33.56 3.85
2362 2821 3.459969 AGACCTGAAACCAGAAAACCTCT 59.540 43.478 0.00 0.00 33.56 3.69
2429 2888 3.424433 GCTCGCACAATTAACGCTAAAGT 60.424 43.478 0.00 0.00 0.00 2.66
2435 2894 5.564127 GCACAATTAACGCTAAAGTTCAGTC 59.436 40.000 0.00 0.00 35.70 3.51
2571 3030 1.019278 TTGGCCGCAAGTCGATCTTC 61.019 55.000 0.00 0.00 41.67 2.87
2691 3150 4.662145 GCAAGTACATCAAATCCCTTTCG 58.338 43.478 0.00 0.00 0.00 3.46
2695 3154 5.107133 AGTACATCAAATCCCTTTCGTACG 58.893 41.667 9.53 9.53 32.24 3.67
2699 3158 0.247185 AAATCCCTTTCGTACGCCGA 59.753 50.000 11.24 1.30 45.66 5.54
2734 3193 3.187058 GCATGTACCCACAAGCGG 58.813 61.111 0.00 0.00 39.34 5.52
2787 3246 2.420687 GCTGGTCTTCGATCCTTCCAAT 60.421 50.000 0.00 0.00 0.00 3.16
2845 3304 1.607148 TGTCTACGCTGTATGATCCCG 59.393 52.381 0.00 0.00 0.00 5.14
2907 3367 0.872388 ATGAAAAACTCGGCGTGGAC 59.128 50.000 13.91 0.95 0.00 4.02
2961 3423 2.042762 TACCCCTGAGGCTGCCAT 59.957 61.111 22.65 5.85 40.58 4.40
3016 3478 2.813754 GTGAAGAGCTATTTGCCACACA 59.186 45.455 6.54 0.00 44.23 3.72
3026 3494 0.685785 TTGCCACACACCCACAACAT 60.686 50.000 0.00 0.00 0.00 2.71
3049 3519 4.448732 TGATCTTCACATGTCGTTTCAGTG 59.551 41.667 0.00 0.00 0.00 3.66
3125 3596 5.006358 GTGACCTGTTATGTAAATAGGTGCG 59.994 44.000 10.44 0.00 41.58 5.34
3161 3651 9.170734 CGCCTATGGACTACTTGTAGTATATAA 57.829 37.037 12.72 0.00 29.08 0.98
3231 3721 3.884169 TGAAGACGCTTGTGTAAATTGC 58.116 40.909 0.00 0.00 0.00 3.56
3233 3723 3.980646 AGACGCTTGTGTAAATTGCAA 57.019 38.095 0.00 0.00 0.00 4.08
3236 3726 3.574614 ACGCTTGTGTAAATTGCAATCC 58.425 40.909 13.38 4.65 0.00 3.01
3237 3727 3.255642 ACGCTTGTGTAAATTGCAATCCT 59.744 39.130 13.38 5.81 0.00 3.24
3243 3733 7.041848 GCTTGTGTAAATTGCAATCCTCTTTTT 60.042 33.333 13.38 4.80 0.00 1.94
3289 3779 5.973899 TCTTAGAGGCTGCTCTATGTATG 57.026 43.478 0.00 0.00 36.04 2.39
3292 3782 3.164268 AGAGGCTGCTCTATGTATGGAG 58.836 50.000 0.00 1.30 38.31 3.86
3298 3788 4.438608 GCTGCTCTATGTATGGAGATCTCG 60.439 50.000 16.46 0.34 37.57 4.04
3317 3807 1.692411 GACTTTCAAGTGGCCTTGGT 58.308 50.000 3.32 0.00 46.65 3.67
3332 3822 2.099098 CCTTGGTTTTCGTCTGTTTGCT 59.901 45.455 0.00 0.00 0.00 3.91
3341 3831 1.528586 CGTCTGTTTGCTTCAGAGTGG 59.471 52.381 6.37 0.00 41.66 4.00
3349 3839 3.126001 TGCTTCAGAGTGGTTACCTTG 57.874 47.619 2.07 0.00 0.00 3.61
3357 3847 5.071788 TCAGAGTGGTTACCTTGAAATCTGT 59.928 40.000 13.79 0.00 34.63 3.41
3385 3875 4.607293 TCTTCAAGAGCTAGAAACTGCA 57.393 40.909 0.00 0.00 0.00 4.41
3398 3888 2.928801 AACTGCAGTGTGTATGGTGA 57.071 45.000 22.49 0.00 0.00 4.02
3404 3894 4.397420 TGCAGTGTGTATGGTGATTTCTT 58.603 39.130 0.00 0.00 0.00 2.52
3412 3902 5.634859 GTGTATGGTGATTTCTTTTTGGCTG 59.365 40.000 0.00 0.00 0.00 4.85
3436 3926 7.671302 TGAAAGTGTATAAACTCTGAAGCTCT 58.329 34.615 0.00 0.00 30.07 4.09
3456 3946 6.208204 AGCTCTCTGTAATTTGCAAATTCAGT 59.792 34.615 33.68 23.87 39.24 3.41
3490 3980 7.361713 CGTTGATGTAATGGTGGTCAAAGTTAT 60.362 37.037 0.00 0.00 31.38 1.89
3508 3998 4.597940 AGTTATTAGTCCTATTCCCTGGGC 59.402 45.833 8.22 0.00 0.00 5.36
3519 4009 0.696501 TCCCTGGGCAAACTACTTCC 59.303 55.000 8.22 0.00 0.00 3.46
3520 4010 0.676782 CCCTGGGCAAACTACTTCCG 60.677 60.000 0.00 0.00 0.00 4.30
3523 4013 1.128809 TGGGCAAACTACTTCCGGGA 61.129 55.000 0.00 0.00 0.00 5.14
3562 4052 4.449068 CACTGGAGTAATCAATATGCGGTC 59.551 45.833 0.00 0.00 0.00 4.79
3566 4056 4.814234 GGAGTAATCAATATGCGGTCACAA 59.186 41.667 0.00 0.00 0.00 3.33
3573 4063 1.424403 TATGCGGTCACAACTTGTCG 58.576 50.000 0.00 0.00 0.00 4.35
3641 4131 6.889301 TTACCGACACTACTATCCCATAAG 57.111 41.667 0.00 0.00 0.00 1.73
3642 4132 3.573110 ACCGACACTACTATCCCATAAGC 59.427 47.826 0.00 0.00 0.00 3.09
3643 4133 3.056749 CCGACACTACTATCCCATAAGCC 60.057 52.174 0.00 0.00 0.00 4.35
3644 4134 3.056749 CGACACTACTATCCCATAAGCCC 60.057 52.174 0.00 0.00 0.00 5.19
3645 4135 3.901844 GACACTACTATCCCATAAGCCCA 59.098 47.826 0.00 0.00 0.00 5.36
3646 4136 4.503398 ACACTACTATCCCATAAGCCCAT 58.497 43.478 0.00 0.00 0.00 4.00
3647 4137 5.661565 ACACTACTATCCCATAAGCCCATA 58.338 41.667 0.00 0.00 0.00 2.74
3648 4138 6.088819 ACACTACTATCCCATAAGCCCATAA 58.911 40.000 0.00 0.00 0.00 1.90
3649 4139 6.735704 ACACTACTATCCCATAAGCCCATAAT 59.264 38.462 0.00 0.00 0.00 1.28
3650 4140 7.904564 ACACTACTATCCCATAAGCCCATAATA 59.095 37.037 0.00 0.00 0.00 0.98
3651 4141 8.768397 CACTACTATCCCATAAGCCCATAATAA 58.232 37.037 0.00 0.00 0.00 1.40
3652 4142 8.769359 ACTACTATCCCATAAGCCCATAATAAC 58.231 37.037 0.00 0.00 0.00 1.89
3653 4143 7.830848 ACTATCCCATAAGCCCATAATAACT 57.169 36.000 0.00 0.00 0.00 2.24
3654 4144 7.862675 ACTATCCCATAAGCCCATAATAACTC 58.137 38.462 0.00 0.00 0.00 3.01
3655 4145 6.977244 ATCCCATAAGCCCATAATAACTCT 57.023 37.500 0.00 0.00 0.00 3.24
3656 4146 9.213777 CTATCCCATAAGCCCATAATAACTCTA 57.786 37.037 0.00 0.00 0.00 2.43
3657 4147 7.496346 TCCCATAAGCCCATAATAACTCTAG 57.504 40.000 0.00 0.00 0.00 2.43
3658 4148 6.070194 TCCCATAAGCCCATAATAACTCTAGC 60.070 42.308 0.00 0.00 0.00 3.42
3659 4149 6.296432 CCCATAAGCCCATAATAACTCTAGCA 60.296 42.308 0.00 0.00 0.00 3.49
3660 4150 6.820656 CCATAAGCCCATAATAACTCTAGCAG 59.179 42.308 0.00 0.00 0.00 4.24
3661 4151 7.310671 CCATAAGCCCATAATAACTCTAGCAGA 60.311 40.741 0.00 0.00 0.00 4.26
3662 4152 6.694445 AAGCCCATAATAACTCTAGCAGAT 57.306 37.500 0.00 0.00 0.00 2.90
3663 4153 6.047511 AGCCCATAATAACTCTAGCAGATG 57.952 41.667 0.00 0.00 0.00 2.90
3664 4154 4.633565 GCCCATAATAACTCTAGCAGATGC 59.366 45.833 0.00 0.00 42.49 3.91
3677 4167 2.935042 GCAGATGCGTCGTATATGTCT 58.065 47.619 17.28 0.00 0.00 3.41
3678 4168 2.658802 GCAGATGCGTCGTATATGTCTG 59.341 50.000 17.28 12.12 35.82 3.51
3679 4169 3.609409 GCAGATGCGTCGTATATGTCTGA 60.609 47.826 17.28 0.00 34.95 3.27
3680 4170 4.727475 CAGATGCGTCGTATATGTCTGAT 58.273 43.478 9.44 0.00 34.95 2.90
3681 4171 4.790651 CAGATGCGTCGTATATGTCTGATC 59.209 45.833 9.44 0.00 34.95 2.92
3682 4172 3.183237 TGCGTCGTATATGTCTGATCG 57.817 47.619 0.00 0.00 0.00 3.69
3683 4173 1.905687 GCGTCGTATATGTCTGATCGC 59.094 52.381 0.00 0.00 34.93 4.58
3684 4174 2.506865 CGTCGTATATGTCTGATCGCC 58.493 52.381 0.00 0.00 0.00 5.54
3685 4175 2.095919 CGTCGTATATGTCTGATCGCCA 60.096 50.000 0.00 0.00 0.00 5.69
3686 4176 3.426292 CGTCGTATATGTCTGATCGCCAT 60.426 47.826 0.00 0.00 0.00 4.40
3687 4177 4.201783 CGTCGTATATGTCTGATCGCCATA 60.202 45.833 2.46 2.46 0.00 2.74
3688 4178 5.637809 GTCGTATATGTCTGATCGCCATAA 58.362 41.667 3.74 0.00 0.00 1.90
3689 4179 6.266323 GTCGTATATGTCTGATCGCCATAAT 58.734 40.000 3.74 0.00 0.00 1.28
3690 4180 7.415229 GTCGTATATGTCTGATCGCCATAATA 58.585 38.462 3.74 0.00 0.00 0.98
3691 4181 7.913821 GTCGTATATGTCTGATCGCCATAATAA 59.086 37.037 3.74 0.00 0.00 1.40
3692 4182 7.913821 TCGTATATGTCTGATCGCCATAATAAC 59.086 37.037 3.74 3.15 0.00 1.89
3693 4183 7.915923 CGTATATGTCTGATCGCCATAATAACT 59.084 37.037 3.74 0.00 0.00 2.24
3696 4186 6.650427 TGTCTGATCGCCATAATAACTACT 57.350 37.500 0.00 0.00 0.00 2.57
3697 4187 7.754851 TGTCTGATCGCCATAATAACTACTA 57.245 36.000 0.00 0.00 0.00 1.82
3698 4188 7.817641 TGTCTGATCGCCATAATAACTACTAG 58.182 38.462 0.00 0.00 0.00 2.57
3699 4189 7.447545 TGTCTGATCGCCATAATAACTACTAGT 59.552 37.037 0.00 0.00 0.00 2.57
3700 4190 8.944029 GTCTGATCGCCATAATAACTACTAGTA 58.056 37.037 1.89 1.89 0.00 1.82
3701 4191 9.682465 TCTGATCGCCATAATAACTACTAGTAT 57.318 33.333 2.33 0.00 0.00 2.12
3702 4192 9.723447 CTGATCGCCATAATAACTACTAGTATG 57.277 37.037 2.33 0.00 37.99 2.39
3709 4199 8.683615 CCATAATAACTACTAGTATGGCGATCA 58.316 37.037 2.33 0.00 46.39 2.92
3710 4200 9.723447 CATAATAACTACTAGTATGGCGATCAG 57.277 37.037 2.33 0.00 35.72 2.90
3725 4215 2.468777 CGATCAGCACACAAAAAGTTGC 59.531 45.455 0.00 0.00 38.39 4.17
3726 4216 2.292103 TCAGCACACAAAAAGTTGCC 57.708 45.000 0.00 0.00 38.39 4.52
3727 4217 1.824230 TCAGCACACAAAAAGTTGCCT 59.176 42.857 0.00 0.00 38.39 4.75
3728 4218 2.159254 TCAGCACACAAAAAGTTGCCTC 60.159 45.455 0.00 0.00 38.39 4.70
3729 4219 1.136891 AGCACACAAAAAGTTGCCTCC 59.863 47.619 0.00 0.00 38.39 4.30
3730 4220 1.136891 GCACACAAAAAGTTGCCTCCT 59.863 47.619 0.00 0.00 38.39 3.69
3731 4221 2.799562 GCACACAAAAAGTTGCCTCCTC 60.800 50.000 0.00 0.00 38.39 3.71
3732 4222 2.031870 ACACAAAAAGTTGCCTCCTCC 58.968 47.619 0.00 0.00 38.39 4.30
3733 4223 2.031120 CACAAAAAGTTGCCTCCTCCA 58.969 47.619 0.00 0.00 38.39 3.86
3734 4224 2.629617 CACAAAAAGTTGCCTCCTCCAT 59.370 45.455 0.00 0.00 38.39 3.41
3735 4225 2.629617 ACAAAAAGTTGCCTCCTCCATG 59.370 45.455 0.00 0.00 38.39 3.66
3736 4226 2.892852 CAAAAAGTTGCCTCCTCCATGA 59.107 45.455 0.00 0.00 0.00 3.07
3737 4227 3.463048 AAAAGTTGCCTCCTCCATGAT 57.537 42.857 0.00 0.00 0.00 2.45
3738 4228 4.591321 AAAAGTTGCCTCCTCCATGATA 57.409 40.909 0.00 0.00 0.00 2.15
3739 4229 4.803329 AAAGTTGCCTCCTCCATGATAT 57.197 40.909 0.00 0.00 0.00 1.63
3740 4230 5.912149 AAAGTTGCCTCCTCCATGATATA 57.088 39.130 0.00 0.00 0.00 0.86
3741 4231 5.912149 AAGTTGCCTCCTCCATGATATAA 57.088 39.130 0.00 0.00 0.00 0.98
3742 4232 5.912149 AGTTGCCTCCTCCATGATATAAA 57.088 39.130 0.00 0.00 0.00 1.40
3743 4233 6.266131 AGTTGCCTCCTCCATGATATAAAA 57.734 37.500 0.00 0.00 0.00 1.52
3744 4234 6.856757 AGTTGCCTCCTCCATGATATAAAAT 58.143 36.000 0.00 0.00 0.00 1.82
3745 4235 7.988937 AGTTGCCTCCTCCATGATATAAAATA 58.011 34.615 0.00 0.00 0.00 1.40
3746 4236 7.885399 AGTTGCCTCCTCCATGATATAAAATAC 59.115 37.037 0.00 0.00 0.00 1.89
3747 4237 7.574021 TGCCTCCTCCATGATATAAAATACT 57.426 36.000 0.00 0.00 0.00 2.12
3748 4238 7.624549 TGCCTCCTCCATGATATAAAATACTC 58.375 38.462 0.00 0.00 0.00 2.59
3749 4239 7.051000 GCCTCCTCCATGATATAAAATACTCC 58.949 42.308 0.00 0.00 0.00 3.85
3750 4240 7.569240 CCTCCTCCATGATATAAAATACTCCC 58.431 42.308 0.00 0.00 0.00 4.30
3751 4241 7.404396 CCTCCTCCATGATATAAAATACTCCCT 59.596 40.741 0.00 0.00 0.00 4.20
3752 4242 8.380742 TCCTCCATGATATAAAATACTCCCTC 57.619 38.462 0.00 0.00 0.00 4.30
3753 4243 7.403231 TCCTCCATGATATAAAATACTCCCTCC 59.597 40.741 0.00 0.00 0.00 4.30
3754 4244 7.182749 CCTCCATGATATAAAATACTCCCTCCA 59.817 40.741 0.00 0.00 0.00 3.86
3755 4245 8.700145 TCCATGATATAAAATACTCCCTCCAT 57.300 34.615 0.00 0.00 0.00 3.41
3756 4246 9.127560 TCCATGATATAAAATACTCCCTCCATT 57.872 33.333 0.00 0.00 0.00 3.16
3757 4247 9.401058 CCATGATATAAAATACTCCCTCCATTC 57.599 37.037 0.00 0.00 0.00 2.67
3758 4248 9.401058 CATGATATAAAATACTCCCTCCATTCC 57.599 37.037 0.00 0.00 0.00 3.01
3759 4249 8.518720 TGATATAAAATACTCCCTCCATTCCA 57.481 34.615 0.00 0.00 0.00 3.53
3760 4250 8.383175 TGATATAAAATACTCCCTCCATTCCAC 58.617 37.037 0.00 0.00 0.00 4.02
3761 4251 4.946160 AAAATACTCCCTCCATTCCACA 57.054 40.909 0.00 0.00 0.00 4.17
3762 4252 4.946160 AAATACTCCCTCCATTCCACAA 57.054 40.909 0.00 0.00 0.00 3.33
3763 4253 5.472301 AAATACTCCCTCCATTCCACAAT 57.528 39.130 0.00 0.00 0.00 2.71
3764 4254 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
3765 4255 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
3766 4256 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
3767 4257 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
3768 4258 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
3769 4259 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
3770 4260 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
3771 4261 2.684881 CTCCATTCCACAATGTAGTGCC 59.315 50.000 0.00 0.00 38.22 5.01
3772 4262 2.308570 TCCATTCCACAATGTAGTGCCT 59.691 45.455 0.00 0.00 38.22 4.75
3773 4263 3.521531 TCCATTCCACAATGTAGTGCCTA 59.478 43.478 0.00 0.00 38.22 3.93
3774 4264 4.165950 TCCATTCCACAATGTAGTGCCTAT 59.834 41.667 0.00 0.00 38.22 2.57
3775 4265 5.368230 TCCATTCCACAATGTAGTGCCTATA 59.632 40.000 0.00 0.00 38.22 1.31
3776 4266 5.702670 CCATTCCACAATGTAGTGCCTATAG 59.297 44.000 0.00 0.00 38.22 1.31
3777 4267 6.464322 CCATTCCACAATGTAGTGCCTATAGA 60.464 42.308 0.00 0.00 38.22 1.98
3778 4268 6.747414 TTCCACAATGTAGTGCCTATAGAT 57.253 37.500 0.00 0.00 38.18 1.98
3779 4269 6.747414 TCCACAATGTAGTGCCTATAGATT 57.253 37.500 0.00 0.00 38.18 2.40
3780 4270 7.136822 TCCACAATGTAGTGCCTATAGATTT 57.863 36.000 0.00 0.00 38.18 2.17
3781 4271 7.573710 TCCACAATGTAGTGCCTATAGATTTT 58.426 34.615 0.00 0.00 38.18 1.82
3782 4272 8.052748 TCCACAATGTAGTGCCTATAGATTTTT 58.947 33.333 0.00 0.00 38.18 1.94
3783 4273 8.131100 CCACAATGTAGTGCCTATAGATTTTTG 58.869 37.037 0.00 0.00 38.18 2.44
3784 4274 8.677300 CACAATGTAGTGCCTATAGATTTTTGT 58.323 33.333 0.00 0.00 32.04 2.83
3785 4275 8.677300 ACAATGTAGTGCCTATAGATTTTTGTG 58.323 33.333 0.00 0.00 0.00 3.33
3786 4276 8.892723 CAATGTAGTGCCTATAGATTTTTGTGA 58.107 33.333 0.00 0.00 0.00 3.58
3787 4277 9.461312 AATGTAGTGCCTATAGATTTTTGTGAA 57.539 29.630 0.00 0.00 0.00 3.18
3788 4278 8.856153 TGTAGTGCCTATAGATTTTTGTGAAA 57.144 30.769 0.00 0.00 0.00 2.69
3789 4279 8.946085 TGTAGTGCCTATAGATTTTTGTGAAAG 58.054 33.333 0.00 0.00 0.00 2.62
3790 4280 8.947115 GTAGTGCCTATAGATTTTTGTGAAAGT 58.053 33.333 0.00 0.00 0.00 2.66
3791 4281 8.045176 AGTGCCTATAGATTTTTGTGAAAGTC 57.955 34.615 0.00 0.00 33.17 3.01
3792 4282 7.665559 AGTGCCTATAGATTTTTGTGAAAGTCA 59.334 33.333 0.00 0.00 34.85 3.41
3793 4283 8.296713 GTGCCTATAGATTTTTGTGAAAGTCAA 58.703 33.333 0.00 0.00 34.85 3.18
3794 4284 8.855110 TGCCTATAGATTTTTGTGAAAGTCAAA 58.145 29.630 0.00 0.00 34.85 2.69
3795 4285 9.129209 GCCTATAGATTTTTGTGAAAGTCAAAC 57.871 33.333 0.00 0.00 34.85 2.93
3808 4298 5.861222 AAAGTCAAACTTTGCCAACTTTG 57.139 34.783 14.50 1.84 45.83 2.77
3809 4299 4.799564 AGTCAAACTTTGCCAACTTTGA 57.200 36.364 5.68 5.68 31.68 2.69
3810 4300 4.494484 AGTCAAACTTTGCCAACTTTGAC 58.506 39.130 21.64 21.64 46.84 3.18
3811 4301 3.616821 GTCAAACTTTGCCAACTTTGACC 59.383 43.478 19.93 9.30 43.35 4.02
3812 4302 3.259374 TCAAACTTTGCCAACTTTGACCA 59.741 39.130 5.68 0.00 29.66 4.02
3813 4303 3.971245 AACTTTGCCAACTTTGACCAA 57.029 38.095 0.00 0.00 0.00 3.67
3814 4304 3.971245 ACTTTGCCAACTTTGACCAAA 57.029 38.095 0.00 0.00 32.47 3.28
3815 4305 3.595173 ACTTTGCCAACTTTGACCAAAC 58.405 40.909 0.00 0.00 31.20 2.93
3816 4306 2.285827 TTGCCAACTTTGACCAAACG 57.714 45.000 0.00 0.00 0.00 3.60
3817 4307 1.178276 TGCCAACTTTGACCAAACGT 58.822 45.000 0.00 0.00 0.00 3.99
3818 4308 2.366533 TGCCAACTTTGACCAAACGTA 58.633 42.857 0.00 0.00 0.00 3.57
3819 4309 2.952978 TGCCAACTTTGACCAAACGTAT 59.047 40.909 0.00 0.00 0.00 3.06
3820 4310 4.135306 TGCCAACTTTGACCAAACGTATA 58.865 39.130 0.00 0.00 0.00 1.47
3821 4311 4.214545 TGCCAACTTTGACCAAACGTATAG 59.785 41.667 0.00 0.00 0.00 1.31
3822 4312 4.453136 GCCAACTTTGACCAAACGTATAGA 59.547 41.667 0.00 0.00 0.00 1.98
3823 4313 5.390567 GCCAACTTTGACCAAACGTATAGAG 60.391 44.000 0.00 0.00 0.00 2.43
3824 4314 5.929992 CCAACTTTGACCAAACGTATAGAGA 59.070 40.000 0.00 0.00 0.00 3.10
3825 4315 6.425721 CCAACTTTGACCAAACGTATAGAGAA 59.574 38.462 0.00 0.00 0.00 2.87
3826 4316 7.041644 CCAACTTTGACCAAACGTATAGAGAAA 60.042 37.037 0.00 0.00 0.00 2.52
3827 4317 8.339714 CAACTTTGACCAAACGTATAGAGAAAA 58.660 33.333 0.00 0.00 0.00 2.29
3828 4318 7.858583 ACTTTGACCAAACGTATAGAGAAAAC 58.141 34.615 0.00 0.00 0.00 2.43
3829 4319 7.713942 ACTTTGACCAAACGTATAGAGAAAACT 59.286 33.333 0.00 0.00 0.00 2.66
3830 4320 7.416154 TTGACCAAACGTATAGAGAAAACTG 57.584 36.000 0.00 0.00 0.00 3.16
3831 4321 6.518493 TGACCAAACGTATAGAGAAAACTGT 58.482 36.000 0.00 0.00 0.00 3.55
3832 4322 6.643770 TGACCAAACGTATAGAGAAAACTGTC 59.356 38.462 0.00 0.00 0.00 3.51
3833 4323 6.756221 ACCAAACGTATAGAGAAAACTGTCT 58.244 36.000 0.00 0.00 0.00 3.41
3834 4324 7.889469 ACCAAACGTATAGAGAAAACTGTCTA 58.111 34.615 0.00 0.00 0.00 2.59
3835 4325 7.811713 ACCAAACGTATAGAGAAAACTGTCTAC 59.188 37.037 0.00 0.00 0.00 2.59
3836 4326 7.811236 CCAAACGTATAGAGAAAACTGTCTACA 59.189 37.037 0.00 0.00 0.00 2.74
3837 4327 9.355215 CAAACGTATAGAGAAAACTGTCTACAT 57.645 33.333 0.00 0.00 0.00 2.29
3838 4328 9.570488 AAACGTATAGAGAAAACTGTCTACATC 57.430 33.333 0.00 0.00 0.00 3.06
3839 4329 8.508883 ACGTATAGAGAAAACTGTCTACATCT 57.491 34.615 0.00 0.00 0.00 2.90
3840 4330 9.610705 ACGTATAGAGAAAACTGTCTACATCTA 57.389 33.333 0.00 0.00 0.00 1.98
3841 4331 9.866936 CGTATAGAGAAAACTGTCTACATCTAC 57.133 37.037 0.00 0.00 0.00 2.59
3847 4337 8.912787 AGAAAACTGTCTACATCTACAATACG 57.087 34.615 0.00 0.00 0.00 3.06
3848 4338 8.737175 AGAAAACTGTCTACATCTACAATACGA 58.263 33.333 0.00 0.00 0.00 3.43
3849 4339 9.350357 GAAAACTGTCTACATCTACAATACGAA 57.650 33.333 0.00 0.00 0.00 3.85
3850 4340 9.701098 AAAACTGTCTACATCTACAATACGAAA 57.299 29.630 0.00 0.00 0.00 3.46
3851 4341 8.684973 AACTGTCTACATCTACAATACGAAAC 57.315 34.615 0.00 0.00 0.00 2.78
3852 4342 7.823665 ACTGTCTACATCTACAATACGAAACA 58.176 34.615 0.00 0.00 0.00 2.83
3853 4343 8.301720 ACTGTCTACATCTACAATACGAAACAA 58.698 33.333 0.00 0.00 0.00 2.83
3854 4344 8.683550 TGTCTACATCTACAATACGAAACAAG 57.316 34.615 0.00 0.00 0.00 3.16
3855 4345 8.301720 TGTCTACATCTACAATACGAAACAAGT 58.698 33.333 0.00 0.00 0.00 3.16
3856 4346 9.778993 GTCTACATCTACAATACGAAACAAGTA 57.221 33.333 0.00 0.00 0.00 2.24
3886 4376 9.692749 TCTGAAAATATAACTCACGATGTATCC 57.307 33.333 0.00 0.00 0.00 2.59
3887 4377 9.476202 CTGAAAATATAACTCACGATGTATCCA 57.524 33.333 0.00 0.00 0.00 3.41
3888 4378 9.825109 TGAAAATATAACTCACGATGTATCCAA 57.175 29.630 0.00 0.00 0.00 3.53
3891 4381 9.996554 AAATATAACTCACGATGTATCCAATGA 57.003 29.630 0.00 0.00 0.00 2.57
3893 4383 7.895975 ATAACTCACGATGTATCCAATGATG 57.104 36.000 0.00 0.00 32.18 3.07
3894 4384 5.282055 ACTCACGATGTATCCAATGATGT 57.718 39.130 0.00 0.00 32.18 3.06
3895 4385 5.052481 ACTCACGATGTATCCAATGATGTG 58.948 41.667 0.00 0.00 32.18 3.21
3896 4386 3.809279 TCACGATGTATCCAATGATGTGC 59.191 43.478 0.00 0.00 32.18 4.57
3897 4387 3.560896 CACGATGTATCCAATGATGTGCA 59.439 43.478 0.00 0.00 32.18 4.57
3898 4388 4.214758 CACGATGTATCCAATGATGTGCAT 59.785 41.667 0.00 0.00 39.43 3.96
3900 4390 5.300034 ACGATGTATCCAATGATGTGCATTT 59.700 36.000 0.00 0.00 44.68 2.32
3901 4391 5.854866 CGATGTATCCAATGATGTGCATTTC 59.145 40.000 0.00 0.00 44.68 2.17
3902 4392 5.172460 TGTATCCAATGATGTGCATTTCG 57.828 39.130 0.00 0.00 44.68 3.46
3903 4393 4.639755 TGTATCCAATGATGTGCATTTCGT 59.360 37.500 0.00 0.00 44.68 3.85
3904 4394 3.763097 TCCAATGATGTGCATTTCGTC 57.237 42.857 0.00 0.00 44.68 4.20
3905 4395 3.346315 TCCAATGATGTGCATTTCGTCT 58.654 40.909 0.00 0.00 44.68 4.18
3906 4396 3.758023 TCCAATGATGTGCATTTCGTCTT 59.242 39.130 0.00 0.00 44.68 3.01
3907 4397 4.100529 CCAATGATGTGCATTTCGTCTTC 58.899 43.478 0.00 0.00 44.68 2.87
3908 4398 4.142534 CCAATGATGTGCATTTCGTCTTCT 60.143 41.667 0.00 0.00 44.68 2.85
3909 4399 5.065090 CCAATGATGTGCATTTCGTCTTCTA 59.935 40.000 0.00 0.00 44.68 2.10
3910 4400 5.980698 ATGATGTGCATTTCGTCTTCTAG 57.019 39.130 0.00 0.00 31.73 2.43
3911 4401 5.072040 TGATGTGCATTTCGTCTTCTAGA 57.928 39.130 0.00 0.00 0.00 2.43
3912 4402 5.664457 TGATGTGCATTTCGTCTTCTAGAT 58.336 37.500 0.00 0.00 0.00 1.98
3913 4403 5.521372 TGATGTGCATTTCGTCTTCTAGATG 59.479 40.000 0.00 0.00 32.57 2.90
3914 4404 4.820897 TGTGCATTTCGTCTTCTAGATGT 58.179 39.130 5.60 0.00 33.10 3.06
3915 4405 5.961272 TGTGCATTTCGTCTTCTAGATGTA 58.039 37.500 5.60 0.00 33.10 2.29
3916 4406 5.805486 TGTGCATTTCGTCTTCTAGATGTAC 59.195 40.000 5.60 3.34 33.10 2.90
3917 4407 5.232414 GTGCATTTCGTCTTCTAGATGTACC 59.768 44.000 5.60 0.00 33.10 3.34
3918 4408 5.127194 TGCATTTCGTCTTCTAGATGTACCT 59.873 40.000 5.60 0.00 33.10 3.08
3919 4409 6.320418 TGCATTTCGTCTTCTAGATGTACCTA 59.680 38.462 5.60 0.00 33.10 3.08
3920 4410 6.637658 GCATTTCGTCTTCTAGATGTACCTAC 59.362 42.308 5.60 0.00 33.10 3.18
3921 4411 7.468906 GCATTTCGTCTTCTAGATGTACCTACT 60.469 40.741 5.60 0.00 33.10 2.57
3922 4412 7.934855 TTTCGTCTTCTAGATGTACCTACTT 57.065 36.000 5.60 0.00 33.10 2.24
3923 4413 7.934855 TTCGTCTTCTAGATGTACCTACTTT 57.065 36.000 5.60 0.00 33.10 2.66
3924 4414 7.934855 TCGTCTTCTAGATGTACCTACTTTT 57.065 36.000 5.60 0.00 33.10 2.27
3925 4415 7.983307 TCGTCTTCTAGATGTACCTACTTTTC 58.017 38.462 5.60 0.00 33.10 2.29
3926 4416 7.828223 TCGTCTTCTAGATGTACCTACTTTTCT 59.172 37.037 5.60 0.00 33.10 2.52
3927 4417 8.124199 CGTCTTCTAGATGTACCTACTTTTCTC 58.876 40.741 5.60 0.00 0.00 2.87
3928 4418 9.181061 GTCTTCTAGATGTACCTACTTTTCTCT 57.819 37.037 5.60 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.674764 CCTCTGAGAGTGCGCCTGAT 61.675 60.000 4.18 0.00 0.00 2.90
15 16 3.768922 GCCTCTGAGAGTGCGCCT 61.769 66.667 4.18 0.32 0.00 5.52
16 17 4.828925 GGCCTCTGAGAGTGCGCC 62.829 72.222 11.55 11.55 30.49 6.53
33 34 4.717629 TGGAAGACGGCAGCGACG 62.718 66.667 0.00 2.24 41.40 5.12
35 36 2.357034 GTTGGAAGACGGCAGCGA 60.357 61.111 0.00 0.00 0.00 4.93
51 52 1.039068 CTGCTCTGGAGATGGATCGT 58.961 55.000 1.35 0.00 0.00 3.73
99 101 2.261361 CTGTGGTGGCATCGACGA 59.739 61.111 0.00 0.00 0.00 4.20
106 108 3.519973 CTCTGACGCTGTGGTGGCA 62.520 63.158 0.00 0.00 38.85 4.92
124 126 1.750399 AGGATGCATGGTGGCGTTC 60.750 57.895 2.46 0.00 36.28 3.95
159 161 2.069776 CTGGAGGGGACAAGAGCAA 58.930 57.895 0.00 0.00 0.00 3.91
161 163 2.270527 GCTGGAGGGGACAAGAGC 59.729 66.667 0.00 0.00 0.00 4.09
228 230 0.247974 GGATCGAACGATGACGACGT 60.248 55.000 14.33 0.00 45.89 4.34
350 353 1.811266 CTGCGGTCTTGACGGATGG 60.811 63.158 11.62 0.00 0.00 3.51
357 360 2.343758 GCCTGACTGCGGTCTTGA 59.656 61.111 25.54 5.63 42.54 3.02
404 407 1.040646 TTCTATCCAGCCGCGAGATT 58.959 50.000 8.23 0.00 0.00 2.40
446 451 0.751452 TACCATTGGCGGCATACGTA 59.249 50.000 14.32 10.33 46.52 3.57
460 465 2.088674 GATCTCCGCCGCAGTACCAT 62.089 60.000 0.00 0.00 0.00 3.55
486 491 0.755686 ATGAGATCTCCCGTGAAGGC 59.244 55.000 20.03 0.00 39.21 4.35
494 499 0.318275 GCGACACGATGAGATCTCCC 60.318 60.000 20.03 10.71 0.00 4.30
499 504 1.064296 GTCGGCGACACGATGAGAT 59.936 57.895 33.07 0.00 45.47 2.75
500 505 0.741927 TAGTCGGCGACACGATGAGA 60.742 55.000 37.71 12.26 45.47 3.27
568 573 3.582242 ATGGTTGGCATGGCGGTGA 62.582 57.895 15.27 0.00 0.00 4.02
581 586 0.260230 TGGTGGTGTTGGTGATGGTT 59.740 50.000 0.00 0.00 0.00 3.67
588 593 1.531365 CATGGCTGGTGGTGTTGGT 60.531 57.895 0.00 0.00 0.00 3.67
762 777 4.227134 CCCTATCGCCGCTGCTGT 62.227 66.667 0.00 0.00 34.43 4.40
764 779 3.917760 GACCCTATCGCCGCTGCT 61.918 66.667 0.00 0.00 34.43 4.24
874 891 3.877508 GGAAATTGTAGAATCACCCCTCG 59.122 47.826 0.00 0.00 0.00 4.63
899 917 7.750458 GTCTTTCGTGCTATCAATTGATTTTGA 59.250 33.333 25.26 13.53 39.77 2.69
902 920 7.335422 AGAGTCTTTCGTGCTATCAATTGATTT 59.665 33.333 25.26 6.52 36.05 2.17
903 921 6.820656 AGAGTCTTTCGTGCTATCAATTGATT 59.179 34.615 25.26 10.37 36.05 2.57
904 922 6.344500 AGAGTCTTTCGTGCTATCAATTGAT 58.656 36.000 23.75 23.75 38.51 2.57
905 923 5.724328 AGAGTCTTTCGTGCTATCAATTGA 58.276 37.500 11.26 11.26 0.00 2.57
906 924 6.531594 TGTAGAGTCTTTCGTGCTATCAATTG 59.468 38.462 0.00 0.00 0.00 2.32
907 925 6.631016 TGTAGAGTCTTTCGTGCTATCAATT 58.369 36.000 0.00 0.00 0.00 2.32
908 926 6.208988 TGTAGAGTCTTTCGTGCTATCAAT 57.791 37.500 0.00 0.00 0.00 2.57
909 927 5.638596 TGTAGAGTCTTTCGTGCTATCAA 57.361 39.130 0.00 0.00 0.00 2.57
910 928 5.836821 ATGTAGAGTCTTTCGTGCTATCA 57.163 39.130 0.00 0.00 0.00 2.15
911 929 5.688176 GGAATGTAGAGTCTTTCGTGCTATC 59.312 44.000 0.00 0.00 0.00 2.08
912 930 5.127194 TGGAATGTAGAGTCTTTCGTGCTAT 59.873 40.000 0.00 0.00 0.00 2.97
913 931 4.461431 TGGAATGTAGAGTCTTTCGTGCTA 59.539 41.667 0.00 0.00 0.00 3.49
914 932 3.258372 TGGAATGTAGAGTCTTTCGTGCT 59.742 43.478 0.00 0.00 0.00 4.40
915 933 3.585862 TGGAATGTAGAGTCTTTCGTGC 58.414 45.455 0.00 0.00 0.00 5.34
916 934 5.289675 GTGATGGAATGTAGAGTCTTTCGTG 59.710 44.000 0.00 0.00 0.00 4.35
917 935 5.186021 AGTGATGGAATGTAGAGTCTTTCGT 59.814 40.000 0.00 0.00 0.00 3.85
927 945 7.943413 CATAACTGAGAGTGATGGAATGTAG 57.057 40.000 0.00 0.00 34.12 2.74
1012 1032 1.974236 CTTGCCCTTCGGAGGATCTAT 59.026 52.381 12.85 0.00 46.74 1.98
1143 1167 3.306166 CGTTCGTATCCTTGTTCATGGAC 59.694 47.826 9.12 0.00 34.90 4.02
1195 1219 3.338249 CATCCTCACGGTTGTCAAAGAT 58.662 45.455 0.00 0.00 0.00 2.40
1344 1370 0.904649 TCTGCAGATCCGTGTCCATT 59.095 50.000 13.74 0.00 0.00 3.16
1379 1405 4.634443 AGTGGTCATTGGAAAGCGTTATAC 59.366 41.667 0.00 0.00 0.00 1.47
1416 1442 4.345257 AGGTGACTATCGCATACCTGAAAT 59.655 41.667 0.00 0.00 40.11 2.17
1431 1457 8.980481 AAAGAATGAAAAAGAAGAGGTGACTA 57.020 30.769 0.00 0.00 44.43 2.59
1514 1546 6.808008 AACATGAGGTGTGAATGAACTAAG 57.192 37.500 0.00 0.00 41.14 2.18
1540 1572 3.434453 CCCAAAGGCATTACTTCCGGATA 60.434 47.826 4.15 0.00 0.00 2.59
1570 1602 5.150715 TCATGGGATTGACTATGTCTAGCT 58.849 41.667 0.00 0.00 33.15 3.32
1636 1668 9.513906 TGTAACATTACCAGATCTTTTGATTCA 57.486 29.630 0.00 0.00 34.51 2.57
1713 1756 2.771639 CGCAGCACCTAGGCGTCTA 61.772 63.158 9.30 0.00 45.27 2.59
1727 1770 2.625737 ACAAGATCTCACCAATCGCAG 58.374 47.619 0.00 0.00 0.00 5.18
1731 1774 7.278868 ACTCGATTAAACAAGATCTCACCAATC 59.721 37.037 0.00 1.83 0.00 2.67
1916 1971 6.590292 ACAGTTACAGATACTGAAATTGACCG 59.410 38.462 9.74 0.00 44.52 4.79
2121 2576 1.557099 AATGCTCGAGTCCAGGTGTA 58.443 50.000 15.13 0.00 0.00 2.90
2122 2577 0.687354 AAATGCTCGAGTCCAGGTGT 59.313 50.000 15.13 0.00 0.00 4.16
2133 2588 5.751990 AGGTAAGTATCGGTTAAAATGCTCG 59.248 40.000 0.00 0.00 0.00 5.03
2198 2654 5.810587 TCGGCAGAAAAACTACAGATATCAC 59.189 40.000 5.32 0.00 0.00 3.06
2207 2663 4.499037 AAATGGTCGGCAGAAAAACTAC 57.501 40.909 0.00 0.00 0.00 2.73
2250 2706 6.347240 CGGCAGCTTAGACTATTGATTGATTC 60.347 42.308 0.00 0.00 0.00 2.52
2270 2726 1.812571 ACAGTCAATAAAAGGCGGCAG 59.187 47.619 13.08 0.00 0.00 4.85
2361 2820 4.037923 AGGTCACAGTTTGCATTAACCAAG 59.962 41.667 0.00 0.00 0.00 3.61
2362 2821 3.957497 AGGTCACAGTTTGCATTAACCAA 59.043 39.130 0.00 0.00 0.00 3.67
2435 2894 4.360563 GGTGACAACGTATCCAGTCATAG 58.639 47.826 9.73 0.00 42.28 2.23
2444 2903 1.082117 CCAGCGGGTGACAACGTATC 61.082 60.000 9.09 0.00 0.00 2.24
2488 2947 1.745115 TGCCATAGTTGTCGCAGCC 60.745 57.895 0.00 0.00 0.00 4.85
2571 3030 0.254747 TTAGGCAATCGGTTCCTGGG 59.745 55.000 9.00 0.00 0.00 4.45
2691 3150 2.279054 GGAATCCCGTCGGCGTAC 60.279 66.667 9.28 2.92 36.15 3.67
2734 3193 0.755686 AGATCAATGGCGAGAGGGTC 59.244 55.000 0.00 0.00 0.00 4.46
2845 3304 2.032681 AGCAGGAGGGTTTGCGTC 59.967 61.111 0.00 0.00 44.80 5.19
2907 3367 3.488047 GCCACAACATTTCTCGGATCATG 60.488 47.826 0.00 0.00 0.00 3.07
2961 3423 2.676750 GCTCGTCACATATTCACCACCA 60.677 50.000 0.00 0.00 0.00 4.17
3016 3478 3.507162 TGTGAAGATCATGTTGTGGGT 57.493 42.857 0.00 0.00 0.00 4.51
3026 3494 4.448732 CACTGAAACGACATGTGAAGATCA 59.551 41.667 1.15 0.38 0.00 2.92
3041 3509 4.210537 TCGCAGTAAGCTTTACACTGAAAC 59.789 41.667 25.27 11.21 41.80 2.78
3125 3596 2.143925 GTCCATAGGCGGTCTTATTGC 58.856 52.381 0.00 0.00 0.00 3.56
3195 3685 6.821388 AGCGTCTTCATAACTGAATCCTTAT 58.179 36.000 0.00 0.00 40.52 1.73
3196 3686 6.222038 AGCGTCTTCATAACTGAATCCTTA 57.778 37.500 0.00 0.00 40.52 2.69
3260 3750 5.370875 AGAGCAGCCTCTAAGATTTCAAT 57.629 39.130 0.00 0.00 46.45 2.57
3289 3779 3.516615 CCACTTGAAAGTCGAGATCTCC 58.483 50.000 17.13 4.02 37.08 3.71
3292 3782 2.003301 GGCCACTTGAAAGTCGAGATC 58.997 52.381 0.00 0.00 37.08 2.75
3317 3807 3.938963 ACTCTGAAGCAAACAGACGAAAA 59.061 39.130 0.00 0.00 39.10 2.29
3332 3822 5.997746 CAGATTTCAAGGTAACCACTCTGAA 59.002 40.000 0.00 0.00 31.49 3.02
3341 3831 7.931275 AGAAACAAGACAGATTTCAAGGTAAC 58.069 34.615 0.00 0.00 35.26 2.50
3385 3875 6.738453 GCCAAAAAGAAATCACCATACACACT 60.738 38.462 0.00 0.00 0.00 3.55
3404 3894 7.500892 TCAGAGTTTATACACTTTCAGCCAAAA 59.499 33.333 0.00 0.00 0.00 2.44
3412 3902 8.032451 AGAGAGCTTCAGAGTTTATACACTTTC 58.968 37.037 0.00 0.00 0.00 2.62
3436 3926 7.517614 TGGTACTGAATTTGCAAATTACAGA 57.482 32.000 37.39 27.79 38.64 3.41
3475 3965 5.836024 AGGACTAATAACTTTGACCACCA 57.164 39.130 0.00 0.00 0.00 4.17
3490 3980 2.579624 TGCCCAGGGAATAGGACTAA 57.420 50.000 10.89 0.00 0.00 2.24
3508 3998 4.395231 GGAATTCTTCCCGGAAGTAGTTTG 59.605 45.833 23.80 0.91 44.30 2.93
3523 4013 2.171448 CCAGTGGGAGATCGGAATTCTT 59.829 50.000 0.00 0.00 35.59 2.52
3540 4030 4.100963 TGACCGCATATTGATTACTCCAGT 59.899 41.667 0.00 0.00 0.00 4.00
3562 4052 9.277565 CTCAATTATTTATTCCGACAAGTTGTG 57.722 33.333 14.57 5.89 0.00 3.33
3566 4056 7.624360 TGCTCAATTATTTATTCCGACAAGT 57.376 32.000 0.00 0.00 0.00 3.16
3595 4085 4.660789 ATTTCCTCATACCATTGCTTGC 57.339 40.909 0.00 0.00 0.00 4.01
3641 4131 4.633565 GCATCTGCTAGAGTTATTATGGGC 59.366 45.833 0.00 0.00 38.21 5.36
3642 4132 4.867047 CGCATCTGCTAGAGTTATTATGGG 59.133 45.833 0.00 0.00 39.32 4.00
3643 4133 5.473931 ACGCATCTGCTAGAGTTATTATGG 58.526 41.667 0.00 0.00 39.32 2.74
3644 4134 5.284897 CGACGCATCTGCTAGAGTTATTATG 59.715 44.000 0.00 0.00 39.32 1.90
3645 4135 5.048643 ACGACGCATCTGCTAGAGTTATTAT 60.049 40.000 0.00 0.00 39.32 1.28
3646 4136 4.275196 ACGACGCATCTGCTAGAGTTATTA 59.725 41.667 0.00 0.00 39.32 0.98
3647 4137 3.066900 ACGACGCATCTGCTAGAGTTATT 59.933 43.478 0.00 0.00 39.32 1.40
3648 4138 2.619177 ACGACGCATCTGCTAGAGTTAT 59.381 45.455 0.00 0.00 39.32 1.89
3649 4139 2.014857 ACGACGCATCTGCTAGAGTTA 58.985 47.619 0.00 0.00 39.32 2.24
3650 4140 0.811915 ACGACGCATCTGCTAGAGTT 59.188 50.000 0.00 0.00 39.32 3.01
3651 4141 1.664873 TACGACGCATCTGCTAGAGT 58.335 50.000 0.00 0.00 39.32 3.24
3652 4142 2.979401 ATACGACGCATCTGCTAGAG 57.021 50.000 0.00 0.00 39.32 2.43
3653 4143 3.751698 ACATATACGACGCATCTGCTAGA 59.248 43.478 0.00 0.00 39.32 2.43
3654 4144 4.084889 ACATATACGACGCATCTGCTAG 57.915 45.455 0.00 0.00 39.32 3.42
3655 4145 3.751698 AGACATATACGACGCATCTGCTA 59.248 43.478 0.00 0.00 39.32 3.49
3656 4146 2.554462 AGACATATACGACGCATCTGCT 59.446 45.455 0.00 0.00 39.32 4.24
3657 4147 2.658802 CAGACATATACGACGCATCTGC 59.341 50.000 0.00 0.00 37.78 4.26
3658 4148 4.147219 TCAGACATATACGACGCATCTG 57.853 45.455 0.00 0.00 34.68 2.90
3659 4149 4.436183 CGATCAGACATATACGACGCATCT 60.436 45.833 0.00 0.00 0.00 2.90
3660 4150 3.781323 CGATCAGACATATACGACGCATC 59.219 47.826 0.00 0.00 0.00 3.91
3661 4151 3.748298 CGATCAGACATATACGACGCAT 58.252 45.455 0.00 0.00 0.00 4.73
3662 4152 2.664698 GCGATCAGACATATACGACGCA 60.665 50.000 0.00 0.00 42.39 5.24
3663 4153 1.905687 GCGATCAGACATATACGACGC 59.094 52.381 0.00 0.00 37.11 5.19
3664 4154 2.095919 TGGCGATCAGACATATACGACG 60.096 50.000 0.00 0.00 28.76 5.12
3665 4155 3.554259 TGGCGATCAGACATATACGAC 57.446 47.619 0.00 0.00 28.76 4.34
3673 4163 6.650427 AGTAGTTATTATGGCGATCAGACA 57.350 37.500 0.00 0.00 45.56 3.41
3674 4164 7.818642 ACTAGTAGTTATTATGGCGATCAGAC 58.181 38.462 0.00 0.00 0.00 3.51
3675 4165 7.997773 ACTAGTAGTTATTATGGCGATCAGA 57.002 36.000 0.00 0.00 0.00 3.27
3676 4166 9.723447 CATACTAGTAGTTATTATGGCGATCAG 57.277 37.037 8.40 0.00 0.00 2.90
3677 4167 8.683615 CCATACTAGTAGTTATTATGGCGATCA 58.316 37.037 14.20 0.00 37.88 2.92
3683 4173 8.683615 TGATCGCCATACTAGTAGTTATTATGG 58.316 37.037 19.42 19.42 43.17 2.74
3684 4174 9.723447 CTGATCGCCATACTAGTAGTTATTATG 57.277 37.037 8.40 6.01 0.00 1.90
3685 4175 8.407064 GCTGATCGCCATACTAGTAGTTATTAT 58.593 37.037 8.40 0.00 0.00 1.28
3686 4176 7.392393 TGCTGATCGCCATACTAGTAGTTATTA 59.608 37.037 8.40 0.00 38.05 0.98
3687 4177 6.208797 TGCTGATCGCCATACTAGTAGTTATT 59.791 38.462 8.40 0.00 38.05 1.40
3688 4178 5.710567 TGCTGATCGCCATACTAGTAGTTAT 59.289 40.000 8.40 0.00 38.05 1.89
3689 4179 5.048921 GTGCTGATCGCCATACTAGTAGTTA 60.049 44.000 8.40 0.00 38.05 2.24
3690 4180 3.889538 TGCTGATCGCCATACTAGTAGTT 59.110 43.478 8.40 0.00 38.05 2.24
3691 4181 3.253677 GTGCTGATCGCCATACTAGTAGT 59.746 47.826 8.85 8.14 38.05 2.73
3692 4182 3.253432 TGTGCTGATCGCCATACTAGTAG 59.747 47.826 8.85 0.00 38.05 2.57
3693 4183 3.004419 GTGTGCTGATCGCCATACTAGTA 59.996 47.826 4.77 4.77 38.05 1.82
3694 4184 2.031870 TGTGCTGATCGCCATACTAGT 58.968 47.619 0.00 0.00 38.05 2.57
3695 4185 2.223805 TGTGTGCTGATCGCCATACTAG 60.224 50.000 11.58 0.00 38.05 2.57
3696 4186 1.754226 TGTGTGCTGATCGCCATACTA 59.246 47.619 11.58 0.10 38.05 1.82
3697 4187 0.536724 TGTGTGCTGATCGCCATACT 59.463 50.000 11.58 0.00 38.05 2.12
3698 4188 1.368641 TTGTGTGCTGATCGCCATAC 58.631 50.000 7.00 6.30 38.05 2.39
3699 4189 2.106477 TTTGTGTGCTGATCGCCATA 57.894 45.000 7.00 1.93 38.05 2.74
3700 4190 1.246649 TTTTGTGTGCTGATCGCCAT 58.753 45.000 7.00 0.00 38.05 4.40
3701 4191 1.001487 CTTTTTGTGTGCTGATCGCCA 60.001 47.619 7.00 3.00 38.05 5.69
3702 4192 1.001378 ACTTTTTGTGTGCTGATCGCC 60.001 47.619 7.00 0.85 38.05 5.54
3703 4193 2.405892 ACTTTTTGTGTGCTGATCGC 57.594 45.000 3.07 3.07 39.77 4.58
3704 4194 2.468777 GCAACTTTTTGTGTGCTGATCG 59.531 45.455 0.00 0.00 34.90 3.69
3705 4195 2.796593 GGCAACTTTTTGTGTGCTGATC 59.203 45.455 0.00 0.00 34.90 2.92
3706 4196 2.825205 GGCAACTTTTTGTGTGCTGAT 58.175 42.857 0.00 0.00 34.90 2.90
3707 4197 2.292103 GGCAACTTTTTGTGTGCTGA 57.708 45.000 0.00 0.00 34.90 4.26
3721 4211 7.885399 AGTATTTTATATCATGGAGGAGGCAAC 59.115 37.037 0.00 0.00 0.00 4.17
3722 4212 7.988937 AGTATTTTATATCATGGAGGAGGCAA 58.011 34.615 0.00 0.00 0.00 4.52
3723 4213 7.311297 GGAGTATTTTATATCATGGAGGAGGCA 60.311 40.741 0.00 0.00 0.00 4.75
3724 4214 7.051000 GGAGTATTTTATATCATGGAGGAGGC 58.949 42.308 0.00 0.00 0.00 4.70
3725 4215 7.404396 AGGGAGTATTTTATATCATGGAGGAGG 59.596 40.741 0.00 0.00 0.00 4.30
3726 4216 8.386012 AGGGAGTATTTTATATCATGGAGGAG 57.614 38.462 0.00 0.00 0.00 3.69
3727 4217 7.403231 GGAGGGAGTATTTTATATCATGGAGGA 59.597 40.741 0.00 0.00 0.00 3.71
3728 4218 7.182749 TGGAGGGAGTATTTTATATCATGGAGG 59.817 40.741 0.00 0.00 0.00 4.30
3729 4219 8.150827 TGGAGGGAGTATTTTATATCATGGAG 57.849 38.462 0.00 0.00 0.00 3.86
3730 4220 8.700145 ATGGAGGGAGTATTTTATATCATGGA 57.300 34.615 0.00 0.00 0.00 3.41
3731 4221 9.401058 GAATGGAGGGAGTATTTTATATCATGG 57.599 37.037 0.00 0.00 0.00 3.66
3732 4222 9.401058 GGAATGGAGGGAGTATTTTATATCATG 57.599 37.037 0.00 0.00 0.00 3.07
3733 4223 9.127560 TGGAATGGAGGGAGTATTTTATATCAT 57.872 33.333 0.00 0.00 0.00 2.45
3734 4224 8.383175 GTGGAATGGAGGGAGTATTTTATATCA 58.617 37.037 0.00 0.00 0.00 2.15
3735 4225 8.383175 TGTGGAATGGAGGGAGTATTTTATATC 58.617 37.037 0.00 0.00 0.00 1.63
3736 4226 8.287904 TGTGGAATGGAGGGAGTATTTTATAT 57.712 34.615 0.00 0.00 0.00 0.86
3737 4227 7.699709 TGTGGAATGGAGGGAGTATTTTATA 57.300 36.000 0.00 0.00 0.00 0.98
3738 4228 6.590656 TGTGGAATGGAGGGAGTATTTTAT 57.409 37.500 0.00 0.00 0.00 1.40
3739 4229 6.395780 TTGTGGAATGGAGGGAGTATTTTA 57.604 37.500 0.00 0.00 0.00 1.52
3740 4230 4.946160 TGTGGAATGGAGGGAGTATTTT 57.054 40.909 0.00 0.00 0.00 1.82
3741 4231 4.946160 TTGTGGAATGGAGGGAGTATTT 57.054 40.909 0.00 0.00 0.00 1.40
3742 4232 4.230502 ACATTGTGGAATGGAGGGAGTATT 59.769 41.667 0.00 0.00 43.00 1.89
3743 4233 3.788142 ACATTGTGGAATGGAGGGAGTAT 59.212 43.478 0.00 0.00 43.00 2.12
3744 4234 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
3745 4235 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
3746 4236 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
3747 4237 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
3751 4241 2.308570 AGGCACTACATTGTGGAATGGA 59.691 45.455 7.20 0.00 43.00 3.41
3752 4242 2.726821 AGGCACTACATTGTGGAATGG 58.273 47.619 7.20 0.00 43.00 3.16
3766 4256 7.665559 TGACTTTCACAAAAATCTATAGGCACT 59.334 33.333 0.00 0.00 46.37 4.40
3767 4257 7.816640 TGACTTTCACAAAAATCTATAGGCAC 58.183 34.615 0.00 0.00 0.00 5.01
3768 4258 7.994425 TGACTTTCACAAAAATCTATAGGCA 57.006 32.000 0.00 0.00 0.00 4.75
3769 4259 9.129209 GTTTGACTTTCACAAAAATCTATAGGC 57.871 33.333 0.00 0.00 38.63 3.93
3774 4264 8.868916 GCAAAGTTTGACTTTCACAAAAATCTA 58.131 29.630 19.82 0.00 44.47 1.98
3775 4265 7.148423 GGCAAAGTTTGACTTTCACAAAAATCT 60.148 33.333 19.82 0.00 44.47 2.40
3776 4266 6.960992 GGCAAAGTTTGACTTTCACAAAAATC 59.039 34.615 19.82 0.00 44.47 2.17
3777 4267 6.429385 TGGCAAAGTTTGACTTTCACAAAAAT 59.571 30.769 21.83 0.00 44.47 1.82
3778 4268 5.760253 TGGCAAAGTTTGACTTTCACAAAAA 59.240 32.000 21.83 0.00 44.47 1.94
3779 4269 5.300752 TGGCAAAGTTTGACTTTCACAAAA 58.699 33.333 21.83 0.00 44.47 2.44
3780 4270 4.887748 TGGCAAAGTTTGACTTTCACAAA 58.112 34.783 21.83 0.00 44.47 2.83
3781 4271 4.527509 TGGCAAAGTTTGACTTTCACAA 57.472 36.364 21.83 0.00 44.47 3.33
3782 4272 4.021544 AGTTGGCAAAGTTTGACTTTCACA 60.022 37.500 21.83 0.00 44.47 3.58
3783 4273 4.494484 AGTTGGCAAAGTTTGACTTTCAC 58.506 39.130 21.83 12.78 44.47 3.18
3784 4274 4.799564 AGTTGGCAAAGTTTGACTTTCA 57.200 36.364 21.83 0.00 44.47 2.69
3792 4282 3.971245 TGGTCAAAGTTGGCAAAGTTT 57.029 38.095 0.00 0.42 39.10 2.66
3793 4283 3.971245 TTGGTCAAAGTTGGCAAAGTT 57.029 38.095 0.00 0.00 33.59 2.66
3794 4284 3.595173 GTTTGGTCAAAGTTGGCAAAGT 58.405 40.909 0.00 0.00 33.59 2.66
3795 4285 2.602660 CGTTTGGTCAAAGTTGGCAAAG 59.397 45.455 0.00 0.00 33.59 2.77
3796 4286 2.028930 ACGTTTGGTCAAAGTTGGCAAA 60.029 40.909 0.00 0.00 33.59 3.68
3797 4287 1.546476 ACGTTTGGTCAAAGTTGGCAA 59.454 42.857 0.00 0.00 33.59 4.52
3798 4288 1.178276 ACGTTTGGTCAAAGTTGGCA 58.822 45.000 0.00 0.00 33.59 4.92
3799 4289 3.636282 ATACGTTTGGTCAAAGTTGGC 57.364 42.857 0.00 0.00 0.00 4.52
3800 4290 5.929992 TCTCTATACGTTTGGTCAAAGTTGG 59.070 40.000 0.00 0.00 0.00 3.77
3801 4291 7.416154 TTCTCTATACGTTTGGTCAAAGTTG 57.584 36.000 0.00 0.00 0.00 3.16
3802 4292 8.340443 GTTTTCTCTATACGTTTGGTCAAAGTT 58.660 33.333 0.00 0.00 0.00 2.66
3803 4293 7.713942 AGTTTTCTCTATACGTTTGGTCAAAGT 59.286 33.333 0.00 1.29 0.00 2.66
3804 4294 8.009974 CAGTTTTCTCTATACGTTTGGTCAAAG 58.990 37.037 0.00 0.00 0.00 2.77
3805 4295 7.496591 ACAGTTTTCTCTATACGTTTGGTCAAA 59.503 33.333 0.00 0.00 0.00 2.69
3806 4296 6.987992 ACAGTTTTCTCTATACGTTTGGTCAA 59.012 34.615 0.00 0.00 0.00 3.18
3807 4297 6.518493 ACAGTTTTCTCTATACGTTTGGTCA 58.482 36.000 0.00 0.00 0.00 4.02
3808 4298 6.867293 AGACAGTTTTCTCTATACGTTTGGTC 59.133 38.462 0.00 0.00 0.00 4.02
3809 4299 6.756221 AGACAGTTTTCTCTATACGTTTGGT 58.244 36.000 0.00 0.00 0.00 3.67
3810 4300 7.811236 TGTAGACAGTTTTCTCTATACGTTTGG 59.189 37.037 0.00 0.00 0.00 3.28
3811 4301 8.738199 TGTAGACAGTTTTCTCTATACGTTTG 57.262 34.615 0.00 0.00 0.00 2.93
3812 4302 9.570488 GATGTAGACAGTTTTCTCTATACGTTT 57.430 33.333 0.00 0.00 0.00 3.60
3813 4303 8.958506 AGATGTAGACAGTTTTCTCTATACGTT 58.041 33.333 0.00 0.00 0.00 3.99
3814 4304 8.508883 AGATGTAGACAGTTTTCTCTATACGT 57.491 34.615 0.00 0.00 0.00 3.57
3815 4305 9.866936 GTAGATGTAGACAGTTTTCTCTATACG 57.133 37.037 0.00 0.00 0.00 3.06
3821 4311 9.011407 CGTATTGTAGATGTAGACAGTTTTCTC 57.989 37.037 0.00 0.00 0.00 2.87
3822 4312 8.737175 TCGTATTGTAGATGTAGACAGTTTTCT 58.263 33.333 0.00 0.00 0.00 2.52
3823 4313 8.906636 TCGTATTGTAGATGTAGACAGTTTTC 57.093 34.615 0.00 0.00 0.00 2.29
3824 4314 9.701098 TTTCGTATTGTAGATGTAGACAGTTTT 57.299 29.630 0.00 0.00 0.00 2.43
3825 4315 9.136952 GTTTCGTATTGTAGATGTAGACAGTTT 57.863 33.333 0.00 0.00 0.00 2.66
3826 4316 8.301720 TGTTTCGTATTGTAGATGTAGACAGTT 58.698 33.333 0.00 0.00 0.00 3.16
3827 4317 7.823665 TGTTTCGTATTGTAGATGTAGACAGT 58.176 34.615 0.00 0.00 0.00 3.55
3828 4318 8.683550 TTGTTTCGTATTGTAGATGTAGACAG 57.316 34.615 0.00 0.00 0.00 3.51
3829 4319 8.301720 ACTTGTTTCGTATTGTAGATGTAGACA 58.698 33.333 0.00 0.00 0.00 3.41
3830 4320 8.684973 ACTTGTTTCGTATTGTAGATGTAGAC 57.315 34.615 0.00 0.00 0.00 2.59
3860 4350 9.692749 GGATACATCGTGAGTTATATTTTCAGA 57.307 33.333 0.00 0.00 0.00 3.27
3861 4351 9.476202 TGGATACATCGTGAGTTATATTTTCAG 57.524 33.333 0.00 0.00 46.17 3.02
3881 4371 5.008019 AGACGAAATGCACATCATTGGATAC 59.992 40.000 0.00 0.00 44.23 2.24
3882 4372 5.125356 AGACGAAATGCACATCATTGGATA 58.875 37.500 0.00 0.00 44.23 2.59
3883 4373 3.949754 AGACGAAATGCACATCATTGGAT 59.050 39.130 0.00 0.00 44.23 3.41
3884 4374 3.346315 AGACGAAATGCACATCATTGGA 58.654 40.909 0.00 0.00 44.23 3.53
3885 4375 3.770263 AGACGAAATGCACATCATTGG 57.230 42.857 0.00 0.00 44.23 3.16
3886 4376 4.978186 AGAAGACGAAATGCACATCATTG 58.022 39.130 0.00 0.00 44.23 2.82
3887 4377 6.108687 TCTAGAAGACGAAATGCACATCATT 58.891 36.000 0.00 0.00 46.82 2.57
3888 4378 5.664457 TCTAGAAGACGAAATGCACATCAT 58.336 37.500 0.00 0.00 36.87 2.45
3889 4379 5.072040 TCTAGAAGACGAAATGCACATCA 57.928 39.130 0.00 0.00 0.00 3.07
3890 4380 5.521735 ACATCTAGAAGACGAAATGCACATC 59.478 40.000 1.17 0.00 0.00 3.06
3891 4381 5.423015 ACATCTAGAAGACGAAATGCACAT 58.577 37.500 1.17 0.00 0.00 3.21
3892 4382 4.820897 ACATCTAGAAGACGAAATGCACA 58.179 39.130 1.17 0.00 0.00 4.57
3893 4383 5.232414 GGTACATCTAGAAGACGAAATGCAC 59.768 44.000 1.17 0.00 0.00 4.57
3894 4384 5.127194 AGGTACATCTAGAAGACGAAATGCA 59.873 40.000 1.17 0.00 0.00 3.96
3895 4385 5.593010 AGGTACATCTAGAAGACGAAATGC 58.407 41.667 1.17 0.00 0.00 3.56
3896 4386 7.932335 AGTAGGTACATCTAGAAGACGAAATG 58.068 38.462 1.17 0.00 0.00 2.32
3897 4387 8.522542 AAGTAGGTACATCTAGAAGACGAAAT 57.477 34.615 1.17 0.00 0.00 2.17
3898 4388 7.934855 AAGTAGGTACATCTAGAAGACGAAA 57.065 36.000 1.17 0.00 0.00 3.46
3899 4389 7.934855 AAAGTAGGTACATCTAGAAGACGAA 57.065 36.000 1.17 0.00 0.00 3.85
3900 4390 7.828223 AGAAAAGTAGGTACATCTAGAAGACGA 59.172 37.037 1.17 0.00 0.00 4.20
3901 4391 7.987649 AGAAAAGTAGGTACATCTAGAAGACG 58.012 38.462 1.17 0.00 0.00 4.18
3902 4392 9.181061 AGAGAAAAGTAGGTACATCTAGAAGAC 57.819 37.037 1.17 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.