Multiple sequence alignment - TraesCS5B01G294000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G294000 chr5B 100.000 6368 0 0 1 6368 478481415 478487782 0.000000e+00 11760.0
1 TraesCS5B01G294000 chr5D 94.313 5697 230 33 418 6055 398530269 398535930 0.000000e+00 8639.0
2 TraesCS5B01G294000 chr5D 97.603 292 5 2 6009 6298 398535972 398536263 3.430000e-137 499.0
3 TraesCS5B01G294000 chr5D 92.857 168 11 1 2961 3128 93062098 93062264 6.380000e-60 243.0
4 TraesCS5B01G294000 chr5D 100.000 43 0 0 6013 6055 398535931 398535973 5.290000e-11 80.5
5 TraesCS5B01G294000 chr5A 96.199 3052 70 14 3016 6055 503525834 503528851 0.000000e+00 4951.0
6 TraesCS5B01G294000 chr5A 87.911 2614 193 52 418 2983 503523296 503525834 0.000000e+00 2963.0
7 TraesCS5B01G294000 chr5A 97.902 286 6 0 6013 6298 503528852 503529137 4.430000e-136 496.0
8 TraesCS5B01G294000 chr6A 87.279 2091 202 33 3132 5205 571853481 571851438 0.000000e+00 2329.0
9 TraesCS5B01G294000 chr6A 81.221 868 113 35 1656 2518 571854801 571853979 0.000000e+00 654.0
10 TraesCS5B01G294000 chr6B 88.430 968 78 21 4207 5165 642976059 642975117 0.000000e+00 1136.0
11 TraesCS5B01G294000 chr6B 80.367 871 103 39 1656 2518 642980953 642980143 3.290000e-167 599.0
12 TraesCS5B01G294000 chr6B 83.794 253 32 5 2715 2959 642979886 642979635 1.380000e-56 231.0
13 TraesCS5B01G294000 chr6B 84.416 154 22 2 189 342 140408863 140409014 3.980000e-32 150.0
14 TraesCS5B01G294000 chr6B 84.564 149 22 1 194 342 140446624 140446771 5.140000e-31 147.0
15 TraesCS5B01G294000 chr6B 74.922 319 32 28 958 1251 642981580 642981285 1.130000e-17 102.0
16 TraesCS5B01G294000 chr6D 86.108 799 75 19 4371 5165 427130378 427129612 0.000000e+00 828.0
17 TraesCS5B01G294000 chr6D 88.946 579 56 3 3291 3868 427144418 427143847 0.000000e+00 708.0
18 TraesCS5B01G294000 chr6D 92.672 464 34 0 3912 4375 427143843 427143380 0.000000e+00 669.0
19 TraesCS5B01G294000 chr6D 81.056 871 118 26 1656 2518 427156258 427155427 0.000000e+00 651.0
20 TraesCS5B01G294000 chr6D 94.012 167 9 1 2961 3127 304099286 304099451 1.060000e-62 252.0
21 TraesCS5B01G294000 chr3B 94.643 168 8 1 2960 3127 42630985 42630819 6.330000e-65 259.0
22 TraesCS5B01G294000 chr3B 85.600 125 12 5 175 294 72720861 72720984 6.700000e-25 126.0
23 TraesCS5B01G294000 chr3A 94.048 168 9 1 2960 3127 34532616 34532450 2.950000e-63 254.0
24 TraesCS5B01G294000 chr3A 94.012 167 9 1 2961 3127 83748187 83748022 1.060000e-62 252.0
25 TraesCS5B01G294000 chr3D 94.012 167 9 1 2961 3127 426452025 426451860 1.060000e-62 252.0
26 TraesCS5B01G294000 chr3D 93.452 168 10 1 2961 3128 71517844 71517678 1.370000e-61 248.0
27 TraesCS5B01G294000 chr1B 86.875 160 14 5 196 350 200944758 200944915 8.490000e-39 172.0
28 TraesCS5B01G294000 chr2A 83.626 171 20 7 189 353 104714453 104714621 3.070000e-33 154.0
29 TraesCS5B01G294000 chr2A 81.548 168 23 8 195 358 197319767 197319930 1.440000e-26 132.0
30 TraesCS5B01G294000 chr7D 82.941 170 26 3 189 357 386401322 386401489 3.980000e-32 150.0
31 TraesCS5B01G294000 chr7D 82.963 135 18 5 229 360 521688150 521688018 4.030000e-22 117.0
32 TraesCS5B01G294000 chr4A 80.729 192 28 7 175 359 666113616 666113805 2.390000e-29 141.0
33 TraesCS5B01G294000 chr4B 85.556 90 4 5 643 732 643147738 643147818 1.140000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G294000 chr5B 478481415 478487782 6367 False 11760.000000 11760 100.000000 1 6368 1 chr5B.!!$F1 6367
1 TraesCS5B01G294000 chr5D 398530269 398536263 5994 False 3072.833333 8639 97.305333 418 6298 3 chr5D.!!$F2 5880
2 TraesCS5B01G294000 chr5A 503523296 503529137 5841 False 2803.333333 4951 94.004000 418 6298 3 chr5A.!!$F1 5880
3 TraesCS5B01G294000 chr6A 571851438 571854801 3363 True 1491.500000 2329 84.250000 1656 5205 2 chr6A.!!$R1 3549
4 TraesCS5B01G294000 chr6B 642975117 642981580 6463 True 517.000000 1136 81.878250 958 5165 4 chr6B.!!$R1 4207
5 TraesCS5B01G294000 chr6D 427129612 427130378 766 True 828.000000 828 86.108000 4371 5165 1 chr6D.!!$R1 794
6 TraesCS5B01G294000 chr6D 427143380 427144418 1038 True 688.500000 708 90.809000 3291 4375 2 chr6D.!!$R3 1084
7 TraesCS5B01G294000 chr6D 427155427 427156258 831 True 651.000000 651 81.056000 1656 2518 1 chr6D.!!$R2 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.110644 GGCAAAGAAAGTCAGCGTCG 60.111 55.000 0.00 0.0 0.00 5.12 F
295 296 0.240945 CCATCACACGAAAAGCCCAC 59.759 55.000 0.00 0.0 0.00 4.61 F
2415 2704 0.034186 CCCTTGGCCATGAAGCACTA 60.034 55.000 19.85 0.0 0.00 2.74 F
3129 3518 0.456312 GCACTCGGTCTGTCCTTACG 60.456 60.000 0.00 0.0 0.00 3.18 F
3657 4141 2.159114 GGAGTTGTCCAGCTCAGAGATC 60.159 54.545 12.31 0.0 43.31 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 2105 0.592637 TTTGACGCTGATTGCACAGG 59.407 50.000 6.47 0.21 43.06 4.00 R
2627 2916 0.405585 ACAAACTGGTGGCCTGCTAT 59.594 50.000 3.32 0.00 0.00 2.97 R
3783 6384 0.676184 ACTGCGACTGTGACTGTGAT 59.324 50.000 0.00 0.00 0.00 3.06 R
5045 8156 0.108615 CACGGTGGAGTAGCTCAAGG 60.109 60.000 0.00 0.00 31.08 3.61 R
5564 8682 3.203040 AGACAGGTTGGATGGGAATTAGG 59.797 47.826 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.412526 TCAAAGTAAAGACGCATCGTTTT 57.587 34.783 0.00 0.00 41.37 2.43
23 24 5.437263 TCAAAGTAAAGACGCATCGTTTTC 58.563 37.500 0.00 0.00 41.37 2.29
24 25 5.006844 TCAAAGTAAAGACGCATCGTTTTCA 59.993 36.000 0.00 0.00 41.37 2.69
25 26 4.385244 AGTAAAGACGCATCGTTTTCAC 57.615 40.909 0.00 0.00 41.37 3.18
26 27 3.805422 AGTAAAGACGCATCGTTTTCACA 59.195 39.130 0.00 0.00 41.37 3.58
27 28 2.949714 AAGACGCATCGTTTTCACAG 57.050 45.000 0.00 0.00 41.37 3.66
28 29 2.148916 AGACGCATCGTTTTCACAGA 57.851 45.000 0.00 0.00 41.37 3.41
29 30 2.479837 AGACGCATCGTTTTCACAGAA 58.520 42.857 0.00 0.00 41.37 3.02
30 31 2.476619 AGACGCATCGTTTTCACAGAAG 59.523 45.455 0.00 0.00 41.37 2.85
31 32 1.531149 ACGCATCGTTTTCACAGAAGG 59.469 47.619 0.00 0.00 36.35 3.46
32 33 1.798223 CGCATCGTTTTCACAGAAGGA 59.202 47.619 0.00 0.00 0.00 3.36
33 34 2.223144 CGCATCGTTTTCACAGAAGGAA 59.777 45.455 0.00 0.00 0.00 3.36
34 35 3.665323 CGCATCGTTTTCACAGAAGGAAG 60.665 47.826 0.00 0.00 0.00 3.46
35 36 3.365364 GCATCGTTTTCACAGAAGGAAGG 60.365 47.826 0.00 0.00 0.00 3.46
36 37 2.218603 TCGTTTTCACAGAAGGAAGGC 58.781 47.619 0.00 0.00 0.00 4.35
37 38 1.946768 CGTTTTCACAGAAGGAAGGCA 59.053 47.619 0.00 0.00 0.00 4.75
38 39 2.357637 CGTTTTCACAGAAGGAAGGCAA 59.642 45.455 0.00 0.00 0.00 4.52
39 40 3.181491 CGTTTTCACAGAAGGAAGGCAAA 60.181 43.478 0.00 0.00 0.00 3.68
40 41 4.363138 GTTTTCACAGAAGGAAGGCAAAG 58.637 43.478 0.00 0.00 0.00 2.77
41 42 3.576078 TTCACAGAAGGAAGGCAAAGA 57.424 42.857 0.00 0.00 0.00 2.52
42 43 3.576078 TCACAGAAGGAAGGCAAAGAA 57.424 42.857 0.00 0.00 0.00 2.52
43 44 3.897239 TCACAGAAGGAAGGCAAAGAAA 58.103 40.909 0.00 0.00 0.00 2.52
44 45 3.885297 TCACAGAAGGAAGGCAAAGAAAG 59.115 43.478 0.00 0.00 0.00 2.62
45 46 3.633986 CACAGAAGGAAGGCAAAGAAAGT 59.366 43.478 0.00 0.00 0.00 2.66
46 47 3.885901 ACAGAAGGAAGGCAAAGAAAGTC 59.114 43.478 0.00 0.00 0.00 3.01
47 48 3.885297 CAGAAGGAAGGCAAAGAAAGTCA 59.115 43.478 0.00 0.00 0.00 3.41
48 49 4.023365 CAGAAGGAAGGCAAAGAAAGTCAG 60.023 45.833 0.00 0.00 0.00 3.51
49 50 2.234143 AGGAAGGCAAAGAAAGTCAGC 58.766 47.619 0.00 0.00 0.00 4.26
50 51 1.068954 GGAAGGCAAAGAAAGTCAGCG 60.069 52.381 0.00 0.00 0.00 5.18
51 52 1.604278 GAAGGCAAAGAAAGTCAGCGT 59.396 47.619 0.00 0.00 0.00 5.07
52 53 1.230324 AGGCAAAGAAAGTCAGCGTC 58.770 50.000 0.00 0.00 0.00 5.19
53 54 0.110644 GGCAAAGAAAGTCAGCGTCG 60.111 55.000 0.00 0.00 0.00 5.12
54 55 0.722799 GCAAAGAAAGTCAGCGTCGC 60.723 55.000 9.80 9.80 0.00 5.19
55 56 0.110644 CAAAGAAAGTCAGCGTCGCC 60.111 55.000 14.86 0.00 0.00 5.54
56 57 0.531974 AAAGAAAGTCAGCGTCGCCA 60.532 50.000 14.86 0.00 0.00 5.69
57 58 0.531974 AAGAAAGTCAGCGTCGCCAA 60.532 50.000 14.86 0.00 0.00 4.52
58 59 0.531974 AGAAAGTCAGCGTCGCCAAA 60.532 50.000 14.86 0.00 0.00 3.28
59 60 0.384353 GAAAGTCAGCGTCGCCAAAC 60.384 55.000 14.86 9.77 0.00 2.93
60 61 1.092921 AAAGTCAGCGTCGCCAAACA 61.093 50.000 14.86 0.00 0.00 2.83
61 62 1.092921 AAGTCAGCGTCGCCAAACAA 61.093 50.000 14.86 0.00 0.00 2.83
62 63 1.092921 AGTCAGCGTCGCCAAACAAA 61.093 50.000 14.86 0.00 0.00 2.83
63 64 0.928451 GTCAGCGTCGCCAAACAAAC 60.928 55.000 14.86 0.00 0.00 2.93
64 65 2.003443 CAGCGTCGCCAAACAAACG 61.003 57.895 14.86 0.00 38.13 3.60
65 66 2.724358 GCGTCGCCAAACAAACGG 60.724 61.111 5.75 0.00 35.74 4.44
66 67 2.724358 CGTCGCCAAACAAACGGC 60.724 61.111 0.00 0.00 45.28 5.68
67 68 2.719354 GTCGCCAAACAAACGGCT 59.281 55.556 0.00 0.00 46.62 5.52
68 69 1.065109 GTCGCCAAACAAACGGCTT 59.935 52.632 0.00 0.00 46.62 4.35
69 70 1.064946 TCGCCAAACAAACGGCTTG 59.935 52.632 0.00 0.00 46.62 4.01
70 71 2.584967 CGCCAAACAAACGGCTTGC 61.585 57.895 0.00 0.00 46.62 4.01
71 72 1.520342 GCCAAACAAACGGCTTGCA 60.520 52.632 0.00 0.00 45.29 4.08
72 73 1.086634 GCCAAACAAACGGCTTGCAA 61.087 50.000 0.00 0.00 45.29 4.08
73 74 0.649993 CCAAACAAACGGCTTGCAAC 59.350 50.000 0.00 0.00 38.75 4.17
74 75 1.354040 CAAACAAACGGCTTGCAACA 58.646 45.000 0.00 0.00 38.75 3.33
75 76 1.060409 CAAACAAACGGCTTGCAACAC 59.940 47.619 0.00 0.00 38.75 3.32
76 77 0.244994 AACAAACGGCTTGCAACACA 59.755 45.000 0.00 0.00 38.75 3.72
77 78 0.244994 ACAAACGGCTTGCAACACAA 59.755 45.000 0.00 0.00 38.75 3.33
86 87 2.340210 TTGCAACACAAGAGTAGGCA 57.660 45.000 0.00 0.00 33.24 4.75
87 88 1.593196 TGCAACACAAGAGTAGGCAC 58.407 50.000 0.00 0.00 30.22 5.01
88 89 1.140852 TGCAACACAAGAGTAGGCACT 59.859 47.619 0.00 0.00 46.37 4.40
89 90 2.222027 GCAACACAAGAGTAGGCACTT 58.778 47.619 0.00 0.00 41.75 3.16
90 91 2.031682 GCAACACAAGAGTAGGCACTTG 60.032 50.000 0.00 0.00 44.95 3.16
91 92 1.884235 ACACAAGAGTAGGCACTTGC 58.116 50.000 0.00 0.00 43.83 4.01
92 93 1.140852 ACACAAGAGTAGGCACTTGCA 59.859 47.619 3.15 0.00 43.83 4.08
93 94 2.224621 ACACAAGAGTAGGCACTTGCAT 60.225 45.455 3.15 0.00 43.83 3.96
94 95 2.161012 CACAAGAGTAGGCACTTGCATG 59.839 50.000 3.15 0.00 43.83 4.06
95 96 1.131883 CAAGAGTAGGCACTTGCATGC 59.868 52.381 11.82 11.82 45.34 4.06
101 102 4.754570 GCACTTGCATGCCAAACA 57.245 50.000 16.68 0.00 39.86 2.83
102 103 2.989196 GCACTTGCATGCCAAACAA 58.011 47.368 16.68 0.69 39.86 2.83
103 104 0.582960 GCACTTGCATGCCAAACAAC 59.417 50.000 16.68 0.00 39.86 3.32
104 105 1.937278 CACTTGCATGCCAAACAACA 58.063 45.000 16.68 0.00 31.94 3.33
105 106 2.277969 CACTTGCATGCCAAACAACAA 58.722 42.857 16.68 0.00 31.94 2.83
106 107 2.676839 CACTTGCATGCCAAACAACAAA 59.323 40.909 16.68 0.00 31.94 2.83
107 108 2.937799 ACTTGCATGCCAAACAACAAAG 59.062 40.909 16.68 10.91 31.94 2.77
108 109 1.950828 TGCATGCCAAACAACAAAGG 58.049 45.000 16.68 0.00 0.00 3.11
109 110 1.228533 GCATGCCAAACAACAAAGGG 58.771 50.000 6.36 0.00 0.00 3.95
110 111 1.474855 GCATGCCAAACAACAAAGGGT 60.475 47.619 6.36 0.00 0.00 4.34
111 112 2.482864 CATGCCAAACAACAAAGGGTC 58.517 47.619 0.00 0.00 0.00 4.46
112 113 1.859302 TGCCAAACAACAAAGGGTCT 58.141 45.000 0.00 0.00 0.00 3.85
113 114 3.019799 TGCCAAACAACAAAGGGTCTA 57.980 42.857 0.00 0.00 0.00 2.59
114 115 2.691011 TGCCAAACAACAAAGGGTCTAC 59.309 45.455 0.00 0.00 0.00 2.59
115 116 2.956333 GCCAAACAACAAAGGGTCTACT 59.044 45.455 0.00 0.00 0.00 2.57
116 117 3.004419 GCCAAACAACAAAGGGTCTACTC 59.996 47.826 0.00 0.00 0.00 2.59
117 118 3.568430 CCAAACAACAAAGGGTCTACTCC 59.432 47.826 0.00 0.00 0.00 3.85
127 128 1.972075 GGGTCTACTCCCTAAGATGCC 59.028 57.143 0.00 0.00 43.85 4.40
128 129 2.426561 GGGTCTACTCCCTAAGATGCCT 60.427 54.545 0.00 0.00 43.85 4.75
129 130 3.181420 GGGTCTACTCCCTAAGATGCCTA 60.181 52.174 0.00 0.00 43.85 3.93
130 131 3.827876 GGTCTACTCCCTAAGATGCCTAC 59.172 52.174 0.00 0.00 0.00 3.18
131 132 3.827876 GTCTACTCCCTAAGATGCCTACC 59.172 52.174 0.00 0.00 0.00 3.18
132 133 3.727923 TCTACTCCCTAAGATGCCTACCT 59.272 47.826 0.00 0.00 0.00 3.08
133 134 4.918273 TCTACTCCCTAAGATGCCTACCTA 59.082 45.833 0.00 0.00 0.00 3.08
134 135 4.120946 ACTCCCTAAGATGCCTACCTAG 57.879 50.000 0.00 0.00 0.00 3.02
135 136 3.467863 ACTCCCTAAGATGCCTACCTAGT 59.532 47.826 0.00 0.00 0.00 2.57
136 137 4.668812 ACTCCCTAAGATGCCTACCTAGTA 59.331 45.833 0.00 0.00 0.00 1.82
137 138 5.316453 ACTCCCTAAGATGCCTACCTAGTAT 59.684 44.000 0.00 0.00 0.00 2.12
138 139 5.828871 TCCCTAAGATGCCTACCTAGTATC 58.171 45.833 0.00 0.00 0.00 2.24
139 140 5.556339 TCCCTAAGATGCCTACCTAGTATCT 59.444 44.000 0.00 0.00 31.09 1.98
140 141 5.889289 CCCTAAGATGCCTACCTAGTATCTC 59.111 48.000 0.00 0.00 30.17 2.75
141 142 5.889289 CCTAAGATGCCTACCTAGTATCTCC 59.111 48.000 0.00 0.00 30.17 3.71
142 143 4.325084 AGATGCCTACCTAGTATCTCCC 57.675 50.000 0.00 0.00 0.00 4.30
143 144 3.926671 AGATGCCTACCTAGTATCTCCCT 59.073 47.826 0.00 0.00 0.00 4.20
144 145 4.358614 AGATGCCTACCTAGTATCTCCCTT 59.641 45.833 0.00 0.00 0.00 3.95
145 146 3.845860 TGCCTACCTAGTATCTCCCTTG 58.154 50.000 0.00 0.00 0.00 3.61
146 147 3.465966 TGCCTACCTAGTATCTCCCTTGA 59.534 47.826 0.00 0.00 0.00 3.02
147 148 4.083565 GCCTACCTAGTATCTCCCTTGAG 58.916 52.174 0.00 0.00 40.17 3.02
148 149 4.448054 GCCTACCTAGTATCTCCCTTGAGT 60.448 50.000 0.00 0.00 39.75 3.41
149 150 5.707495 CCTACCTAGTATCTCCCTTGAGTT 58.293 45.833 0.00 0.00 39.75 3.01
150 151 5.536916 CCTACCTAGTATCTCCCTTGAGTTG 59.463 48.000 0.00 0.00 39.75 3.16
151 152 3.707102 ACCTAGTATCTCCCTTGAGTTGC 59.293 47.826 0.00 0.00 39.75 4.17
152 153 3.964031 CCTAGTATCTCCCTTGAGTTGCT 59.036 47.826 0.00 0.00 39.75 3.91
153 154 4.038642 CCTAGTATCTCCCTTGAGTTGCTC 59.961 50.000 0.00 0.00 39.75 4.26
154 155 3.718723 AGTATCTCCCTTGAGTTGCTCT 58.281 45.455 0.00 0.00 39.75 4.09
155 156 3.450457 AGTATCTCCCTTGAGTTGCTCTG 59.550 47.826 0.00 0.00 39.75 3.35
156 157 0.979665 TCTCCCTTGAGTTGCTCTGG 59.020 55.000 0.00 0.93 39.75 3.86
157 158 0.676151 CTCCCTTGAGTTGCTCTGGC 60.676 60.000 0.00 0.00 34.90 4.85
158 159 1.676967 CCCTTGAGTTGCTCTGGCC 60.677 63.158 0.00 0.00 37.74 5.36
159 160 1.676967 CCTTGAGTTGCTCTGGCCC 60.677 63.158 0.00 0.00 37.74 5.80
160 161 1.073722 CTTGAGTTGCTCTGGCCCA 59.926 57.895 0.00 0.00 37.74 5.36
161 162 0.959372 CTTGAGTTGCTCTGGCCCAG 60.959 60.000 3.69 3.69 37.74 4.45
162 163 2.749441 GAGTTGCTCTGGCCCAGC 60.749 66.667 15.50 15.50 37.74 4.85
163 164 3.255397 AGTTGCTCTGGCCCAGCT 61.255 61.111 21.27 7.67 37.79 4.24
164 165 3.060615 GTTGCTCTGGCCCAGCTG 61.061 66.667 21.27 6.78 37.79 4.24
165 166 3.573229 TTGCTCTGGCCCAGCTGT 61.573 61.111 21.27 0.00 37.79 4.40
166 167 2.223443 TTGCTCTGGCCCAGCTGTA 61.223 57.895 21.27 0.00 37.79 2.74
167 168 1.778017 TTGCTCTGGCCCAGCTGTAA 61.778 55.000 21.27 4.49 37.79 2.41
168 169 1.746991 GCTCTGGCCCAGCTGTAAC 60.747 63.158 13.81 2.29 33.75 2.50
169 170 1.679311 CTCTGGCCCAGCTGTAACA 59.321 57.895 13.81 7.11 0.00 2.41
170 171 0.254178 CTCTGGCCCAGCTGTAACAT 59.746 55.000 13.81 0.00 0.00 2.71
171 172 0.698238 TCTGGCCCAGCTGTAACATT 59.302 50.000 13.81 0.00 0.00 2.71
172 173 1.075374 TCTGGCCCAGCTGTAACATTT 59.925 47.619 13.81 0.00 0.00 2.32
173 174 1.895131 CTGGCCCAGCTGTAACATTTT 59.105 47.619 13.81 0.00 0.00 1.82
174 175 1.892474 TGGCCCAGCTGTAACATTTTC 59.108 47.619 13.81 0.00 0.00 2.29
175 176 1.204704 GGCCCAGCTGTAACATTTTCC 59.795 52.381 13.81 0.00 0.00 3.13
176 177 1.892474 GCCCAGCTGTAACATTTTCCA 59.108 47.619 13.81 0.00 0.00 3.53
177 178 2.497273 GCCCAGCTGTAACATTTTCCAT 59.503 45.455 13.81 0.00 0.00 3.41
178 179 3.429410 GCCCAGCTGTAACATTTTCCATC 60.429 47.826 13.81 0.00 0.00 3.51
179 180 3.181497 CCCAGCTGTAACATTTTCCATCG 60.181 47.826 13.81 0.00 0.00 3.84
180 181 3.181497 CCAGCTGTAACATTTTCCATCGG 60.181 47.826 13.81 0.00 0.00 4.18
181 182 3.440173 CAGCTGTAACATTTTCCATCGGT 59.560 43.478 5.25 0.00 0.00 4.69
182 183 3.689649 AGCTGTAACATTTTCCATCGGTC 59.310 43.478 0.00 0.00 0.00 4.79
183 184 3.485216 GCTGTAACATTTTCCATCGGTCG 60.485 47.826 0.00 0.00 0.00 4.79
184 185 3.004171 TGTAACATTTTCCATCGGTCGG 58.996 45.455 0.00 0.00 0.00 4.79
185 186 1.459450 AACATTTTCCATCGGTCGGG 58.541 50.000 0.00 0.00 0.00 5.14
186 187 1.029947 ACATTTTCCATCGGTCGGGC 61.030 55.000 0.00 0.00 0.00 6.13
187 188 1.453197 ATTTTCCATCGGTCGGGCC 60.453 57.895 0.00 0.00 0.00 5.80
206 207 3.440415 GCACGGGCCTACCAAAGC 61.440 66.667 0.00 0.00 40.22 3.51
211 212 2.437895 GGCCTACCAAAGCCCGAC 60.438 66.667 0.00 0.00 43.76 4.79
212 213 2.818274 GCCTACCAAAGCCCGACG 60.818 66.667 0.00 0.00 0.00 5.12
213 214 2.818274 CCTACCAAAGCCCGACGC 60.818 66.667 0.00 0.00 37.98 5.19
214 215 2.047655 CTACCAAAGCCCGACGCA 60.048 61.111 0.00 0.00 41.38 5.24
215 216 1.669760 CTACCAAAGCCCGACGCAA 60.670 57.895 0.00 0.00 41.38 4.85
216 217 1.227883 TACCAAAGCCCGACGCAAA 60.228 52.632 0.00 0.00 41.38 3.68
217 218 0.818445 TACCAAAGCCCGACGCAAAA 60.818 50.000 0.00 0.00 41.38 2.44
218 219 1.066587 CCAAAGCCCGACGCAAAAA 59.933 52.632 0.00 0.00 41.38 1.94
233 234 2.600470 AAAAACCTGGGCCCGAGC 60.600 61.111 19.37 0.00 38.76 5.03
263 264 3.825143 CCATTGGGCCTAAAAATCAGG 57.175 47.619 5.31 0.00 36.16 3.86
270 271 2.967599 CCTAAAAATCAGGCCCAAGC 57.032 50.000 0.00 0.00 38.76 4.01
283 284 4.738998 CAAGCCCGGCCCATCACA 62.739 66.667 5.55 0.00 0.00 3.58
284 285 4.740822 AAGCCCGGCCCATCACAC 62.741 66.667 5.55 0.00 0.00 3.82
287 288 4.402528 CCCGGCCCATCACACGAA 62.403 66.667 0.00 0.00 0.00 3.85
288 289 2.359354 CCGGCCCATCACACGAAA 60.359 61.111 0.00 0.00 0.00 3.46
289 290 1.969064 CCGGCCCATCACACGAAAA 60.969 57.895 0.00 0.00 0.00 2.29
290 291 1.501741 CGGCCCATCACACGAAAAG 59.498 57.895 0.00 0.00 0.00 2.27
291 292 1.212751 GGCCCATCACACGAAAAGC 59.787 57.895 0.00 0.00 0.00 3.51
292 293 1.212751 GCCCATCACACGAAAAGCC 59.787 57.895 0.00 0.00 0.00 4.35
293 294 1.883021 CCCATCACACGAAAAGCCC 59.117 57.895 0.00 0.00 0.00 5.19
294 295 0.893270 CCCATCACACGAAAAGCCCA 60.893 55.000 0.00 0.00 0.00 5.36
295 296 0.240945 CCATCACACGAAAAGCCCAC 59.759 55.000 0.00 0.00 0.00 4.61
296 297 1.238439 CATCACACGAAAAGCCCACT 58.762 50.000 0.00 0.00 0.00 4.00
297 298 1.069022 CATCACACGAAAAGCCCACTG 60.069 52.381 0.00 0.00 0.00 3.66
298 299 0.817634 TCACACGAAAAGCCCACTGG 60.818 55.000 0.00 0.00 0.00 4.00
323 324 3.903208 GGCCAGGCCTCTTCATTAA 57.097 52.632 24.99 0.00 46.69 1.40
324 325 2.143876 GGCCAGGCCTCTTCATTAAA 57.856 50.000 24.99 0.00 46.69 1.52
325 326 1.751351 GGCCAGGCCTCTTCATTAAAC 59.249 52.381 24.99 0.00 46.69 2.01
326 327 2.621668 GGCCAGGCCTCTTCATTAAACT 60.622 50.000 24.99 0.00 46.69 2.66
327 328 2.424956 GCCAGGCCTCTTCATTAAACTG 59.575 50.000 0.00 0.00 0.00 3.16
328 329 2.424956 CCAGGCCTCTTCATTAAACTGC 59.575 50.000 0.00 0.00 0.00 4.40
329 330 2.096496 CAGGCCTCTTCATTAAACTGCG 59.904 50.000 0.00 0.00 0.00 5.18
330 331 2.027192 AGGCCTCTTCATTAAACTGCGA 60.027 45.455 0.00 0.00 0.00 5.10
331 332 2.747446 GGCCTCTTCATTAAACTGCGAA 59.253 45.455 0.00 0.00 0.00 4.70
332 333 3.426292 GGCCTCTTCATTAAACTGCGAAC 60.426 47.826 0.00 0.00 0.00 3.95
333 334 3.188460 GCCTCTTCATTAAACTGCGAACA 59.812 43.478 0.00 0.00 0.00 3.18
334 335 4.142600 GCCTCTTCATTAAACTGCGAACAT 60.143 41.667 0.00 0.00 0.00 2.71
335 336 5.327091 CCTCTTCATTAAACTGCGAACATG 58.673 41.667 0.00 0.00 0.00 3.21
336 337 5.122239 CCTCTTCATTAAACTGCGAACATGA 59.878 40.000 0.00 0.00 0.00 3.07
337 338 5.927030 TCTTCATTAAACTGCGAACATGAC 58.073 37.500 0.00 0.00 0.00 3.06
338 339 4.320667 TCATTAAACTGCGAACATGACG 57.679 40.909 0.00 6.19 0.00 4.35
339 340 3.124466 TCATTAAACTGCGAACATGACGG 59.876 43.478 15.62 3.90 0.00 4.79
340 341 1.434555 TAAACTGCGAACATGACGGG 58.565 50.000 15.62 0.00 0.00 5.28
341 342 1.852067 AAACTGCGAACATGACGGGC 61.852 55.000 15.62 7.31 0.00 6.13
342 343 3.499737 CTGCGAACATGACGGGCC 61.500 66.667 15.62 0.00 0.00 5.80
345 346 2.819595 CGAACATGACGGGCCCAG 60.820 66.667 24.92 17.36 0.00 4.45
346 347 3.134127 GAACATGACGGGCCCAGC 61.134 66.667 24.92 13.72 0.00 4.85
380 381 2.272471 GCAAGGCCAGGTAGGGTC 59.728 66.667 5.01 0.00 38.09 4.46
381 382 2.584608 CAAGGCCAGGTAGGGTCG 59.415 66.667 5.01 0.00 37.71 4.79
382 383 2.687566 AAGGCCAGGTAGGGTCGG 60.688 66.667 5.01 0.00 37.71 4.79
383 384 4.798682 AGGCCAGGTAGGGTCGGG 62.799 72.222 5.01 0.00 37.71 5.14
420 421 0.401738 TCCATGGCCAGCTATAAGCC 59.598 55.000 13.05 8.83 43.77 4.35
424 425 3.621953 GGCCAGCTATAAGCCAGAG 57.378 57.895 0.00 0.00 46.34 3.35
457 458 2.116827 TTCGAACAAACAGGTGGTGT 57.883 45.000 0.00 0.00 43.24 4.16
477 478 1.518903 GCAACCAGAAGCTGACCACC 61.519 60.000 0.00 0.00 32.44 4.61
486 487 0.550914 AGCTGACCACCAAACCAGAA 59.449 50.000 0.00 0.00 0.00 3.02
495 496 2.634940 CACCAAACCAGAAGAGAGGAGA 59.365 50.000 0.00 0.00 0.00 3.71
496 497 2.903135 ACCAAACCAGAAGAGAGGAGAG 59.097 50.000 0.00 0.00 0.00 3.20
497 498 2.235898 CCAAACCAGAAGAGAGGAGAGG 59.764 54.545 0.00 0.00 0.00 3.69
498 499 3.169099 CAAACCAGAAGAGAGGAGAGGA 58.831 50.000 0.00 0.00 0.00 3.71
499 500 2.826674 ACCAGAAGAGAGGAGAGGAG 57.173 55.000 0.00 0.00 0.00 3.69
500 501 2.283834 ACCAGAAGAGAGGAGAGGAGA 58.716 52.381 0.00 0.00 0.00 3.71
553 554 6.112058 CAGAGAGGAGTTTAATTAGCAGCTT 58.888 40.000 0.00 0.00 0.00 3.74
554 555 6.257630 CAGAGAGGAGTTTAATTAGCAGCTTC 59.742 42.308 0.00 0.00 0.00 3.86
577 578 2.034053 CGGAGCAGAGAGGTCTTGTATC 59.966 54.545 0.00 0.00 44.16 2.24
580 588 3.951037 GAGCAGAGAGGTCTTGTATCAGA 59.049 47.826 0.00 0.00 41.51 3.27
587 595 4.461081 AGAGGTCTTGTATCAGACAGTCAC 59.539 45.833 2.66 0.00 44.53 3.67
616 624 1.000938 GAGAAAGGCAAGCACTGTTGG 60.001 52.381 0.00 0.00 0.00 3.77
836 884 2.670934 CCTGGCAGCAGGTGTGAC 60.671 66.667 9.56 0.00 37.57 3.67
838 886 1.670406 CTGGCAGCAGGTGTGACTC 60.670 63.158 0.00 0.00 0.00 3.36
901 949 3.550437 ATGGAATGAGTCGGAGAAAGG 57.450 47.619 0.00 0.00 39.69 3.11
902 950 1.555075 TGGAATGAGTCGGAGAAAGGG 59.445 52.381 0.00 0.00 39.69 3.95
1003 1057 3.580604 AAAGCTGGCCTGGCTGAGG 62.581 63.158 19.68 7.42 46.13 3.86
1033 1093 3.013921 AGAGAAACGAGAGACCAGCTAG 58.986 50.000 0.00 0.00 0.00 3.42
1079 1145 2.626780 CGACTCACCCGAGCAGTCA 61.627 63.158 0.00 0.00 43.66 3.41
1114 1195 2.886081 CGAGAGGATGAAGAAGGTGTG 58.114 52.381 0.00 0.00 0.00 3.82
1146 1227 2.584391 GCTGGGTCCGACTCCAAGT 61.584 63.158 9.27 0.00 31.97 3.16
1184 1265 2.031120 CTGCACAAGTTCCCCAAAGAA 58.969 47.619 0.00 0.00 0.00 2.52
1195 1276 3.124921 CAAAGAATCCGGCGCCGT 61.125 61.111 43.12 28.66 37.81 5.68
1251 1332 0.753262 GCTCATCCCCATCAGTACGT 59.247 55.000 0.00 0.00 0.00 3.57
1254 1335 0.875908 CATCCCCATCAGTACGTGCG 60.876 60.000 0.00 0.00 0.00 5.34
1266 1347 4.680237 CGTGCGTCTCCCCTGCAA 62.680 66.667 0.00 0.00 40.83 4.08
1268 1349 1.220749 GTGCGTCTCCCCTGCAATA 59.779 57.895 0.00 0.00 40.83 1.90
1271 1352 0.394565 GCGTCTCCCCTGCAATATCT 59.605 55.000 0.00 0.00 0.00 1.98
1272 1353 1.202698 GCGTCTCCCCTGCAATATCTT 60.203 52.381 0.00 0.00 0.00 2.40
1297 1385 4.897076 TCTTTTCCCCCTTTTTACTGGAAC 59.103 41.667 0.00 0.00 34.95 3.62
1308 1396 6.993902 CCTTTTTACTGGAACCACAACTACTA 59.006 38.462 0.00 0.00 0.00 1.82
1314 1402 5.186021 ACTGGAACCACAACTACTATCTCTG 59.814 44.000 0.00 0.00 0.00 3.35
1357 1600 3.773117 GTGCAACAAGATCAACCGG 57.227 52.632 0.00 0.00 36.32 5.28
1358 1601 0.240945 GTGCAACAAGATCAACCGGG 59.759 55.000 6.32 0.00 36.32 5.73
1384 1647 8.348507 GCCTCCATTTCTTTCTGTAAATCATAG 58.651 37.037 0.00 0.00 0.00 2.23
1420 1683 8.044309 TCAATACAGTAAATAGTTGGCTAGCAA 58.956 33.333 18.24 0.85 0.00 3.91
1466 1729 0.445043 CGGGGCGTAAAAACTAGTGC 59.555 55.000 0.00 0.00 0.00 4.40
1471 1734 3.057104 GGGCGTAAAAACTAGTGCCATTT 60.057 43.478 18.34 10.37 44.21 2.32
1474 1737 5.106436 GGCGTAAAAACTAGTGCCATTTAGT 60.106 40.000 13.31 0.00 42.03 2.24
1482 1745 7.625828 AACTAGTGCCATTTAGTTTGGTATC 57.374 36.000 0.00 0.00 36.90 2.24
1483 1746 6.717289 ACTAGTGCCATTTAGTTTGGTATCA 58.283 36.000 0.00 0.00 36.57 2.15
1486 1749 5.772672 AGTGCCATTTAGTTTGGTATCACAA 59.227 36.000 0.00 0.00 36.57 3.33
1518 1781 6.916440 TCTACTTATGACTGCGACTTTGTAA 58.084 36.000 0.00 0.00 0.00 2.41
1519 1782 7.544622 TCTACTTATGACTGCGACTTTGTAAT 58.455 34.615 0.00 0.00 0.00 1.89
1520 1783 8.033038 TCTACTTATGACTGCGACTTTGTAATT 58.967 33.333 0.00 0.00 0.00 1.40
1521 1784 7.435068 ACTTATGACTGCGACTTTGTAATTT 57.565 32.000 0.00 0.00 0.00 1.82
1523 1786 9.162764 ACTTATGACTGCGACTTTGTAATTTAT 57.837 29.630 0.00 0.00 0.00 1.40
1550 1813 4.883585 ACACAAGGCACATATTGACATAGG 59.116 41.667 0.00 0.00 34.40 2.57
1551 1814 4.276678 CACAAGGCACATATTGACATAGGG 59.723 45.833 0.00 0.00 34.40 3.53
1552 1815 3.795688 AGGCACATATTGACATAGGGG 57.204 47.619 0.00 0.00 34.40 4.79
1553 1816 3.056080 AGGCACATATTGACATAGGGGT 58.944 45.455 0.00 0.00 34.40 4.95
1558 1821 5.536161 GCACATATTGACATAGGGGTTGATT 59.464 40.000 0.00 0.00 0.00 2.57
1633 1896 3.870633 AAGGAGCGAGTAGTAAACCAG 57.129 47.619 0.00 0.00 0.00 4.00
1636 1899 0.535797 AGCGAGTAGTAAACCAGGGC 59.464 55.000 0.00 0.00 0.00 5.19
1637 1900 0.461516 GCGAGTAGTAAACCAGGGCC 60.462 60.000 0.00 0.00 0.00 5.80
1654 1917 3.070748 GGGCCGCAAAAATTTATGTGTT 58.929 40.909 0.00 0.00 0.00 3.32
1800 2068 3.096092 TGCACAGGAAAAGGTTCAAACT 58.904 40.909 0.00 0.00 35.25 2.66
1837 2105 4.218417 TCCAAGAATGCCAAGAAAACTAGC 59.782 41.667 0.00 0.00 0.00 3.42
1840 2108 3.760684 AGAATGCCAAGAAAACTAGCCTG 59.239 43.478 0.00 0.00 0.00 4.85
1938 2206 1.047002 CAGAGGATGTAGCAGAGGGG 58.953 60.000 0.00 0.00 0.00 4.79
1973 2241 1.810853 CCGCGCATCATGTCACTGA 60.811 57.895 8.75 0.00 0.00 3.41
2012 2280 4.334759 AGCAGCTGATAAGCATTACACAAG 59.665 41.667 20.43 0.00 37.25 3.16
2018 2286 6.618287 TGATAAGCATTACACAAGGTATGC 57.382 37.500 0.00 0.00 37.06 3.14
2226 2498 0.453390 GCGGATCCTTCCTGCAAAAG 59.547 55.000 10.75 2.23 40.17 2.27
2321 2608 8.664798 TCACTTTTGTTCATAGGATTGATTACG 58.335 33.333 0.00 0.00 0.00 3.18
2413 2702 2.353610 CCCCTTGGCCATGAAGCAC 61.354 63.158 19.85 0.00 0.00 4.40
2415 2704 0.034186 CCCTTGGCCATGAAGCACTA 60.034 55.000 19.85 0.00 0.00 2.74
2473 2762 4.086706 TCAGTGGATAGATCGACTAGCA 57.913 45.455 6.84 0.00 42.78 3.49
2546 2835 1.200948 GCTGCAGATGGAAAGGACAAC 59.799 52.381 20.43 0.00 0.00 3.32
2554 2843 0.534203 GGAAAGGACAACTCCGTGCA 60.534 55.000 0.00 0.00 42.22 4.57
2563 2852 0.969149 AACTCCGTGCAGATCAGACA 59.031 50.000 0.00 0.00 0.00 3.41
2651 2940 2.306847 CAGGCCACCAGTTTGTACTTT 58.693 47.619 5.01 0.00 30.26 2.66
2652 2941 2.034558 CAGGCCACCAGTTTGTACTTTG 59.965 50.000 5.01 0.00 30.26 2.77
2654 2943 2.028876 GCCACCAGTTTGTACTTTGGT 58.971 47.619 0.00 0.03 37.33 3.67
2655 2944 2.223711 GCCACCAGTTTGTACTTTGGTG 60.224 50.000 21.38 21.38 43.27 4.17
2656 2945 3.020984 CCACCAGTTTGTACTTTGGTGT 58.979 45.455 23.91 4.62 42.62 4.16
2847 3235 4.636249 AGTTGGAGAGTGTAAGAAAGCAG 58.364 43.478 0.00 0.00 0.00 4.24
3026 3415 1.613630 AGGTCCTGGGTTCGATGCT 60.614 57.895 0.00 0.00 0.00 3.79
3128 3517 0.889306 AGCACTCGGTCTGTCCTTAC 59.111 55.000 0.00 0.00 0.00 2.34
3129 3518 0.456312 GCACTCGGTCTGTCCTTACG 60.456 60.000 0.00 0.00 0.00 3.18
3657 4141 2.159114 GGAGTTGTCCAGCTCAGAGATC 60.159 54.545 12.31 0.00 43.31 2.75
3783 6384 4.380531 AGTTGAATCTCGAAAGCACAGAA 58.619 39.130 0.00 0.00 0.00 3.02
3881 6985 5.959618 ACTAAACTGGTATTTTGCTGGTC 57.040 39.130 0.00 0.00 0.00 4.02
3893 6997 9.660180 GGTATTTTGCTGGTCCAAATAAATTAA 57.340 29.630 8.99 0.00 34.92 1.40
4082 7186 7.001674 TGCAAGGACAATTCTAAACCTCTTAA 58.998 34.615 0.00 0.00 0.00 1.85
4730 7838 5.048782 TGAGTCATACATTTTGCTTGGTGAC 60.049 40.000 0.00 0.00 35.68 3.67
4885 7996 4.636249 AGACAAGCTCAGTCGATTTCTTT 58.364 39.130 12.08 0.00 40.84 2.52
4932 8043 4.359706 GTTGTTTCACCTTCGCATTTCTT 58.640 39.130 0.00 0.00 0.00 2.52
5045 8156 4.016444 ACCATACATCACCCATGACAAAC 58.984 43.478 0.00 0.00 37.79 2.93
5326 8438 3.548616 CGGCATGCCAGTATTTGTACATG 60.549 47.826 34.93 10.67 40.10 3.21
5346 8458 4.698201 TGGGATCTGTACAGTCAAAACA 57.302 40.909 21.99 11.95 0.00 2.83
5422 8538 1.469703 CTGCTTGATCAACAATCGGCA 59.530 47.619 14.73 14.73 40.76 5.69
5483 8599 5.992217 GGAAAGTACGGAAGCATATCTGAAT 59.008 40.000 0.63 0.00 0.00 2.57
5585 8703 3.555966 CCTAATTCCCATCCAACCTGTC 58.444 50.000 0.00 0.00 0.00 3.51
5758 8876 0.576328 GTGTGGTGTGCGCAAATTTG 59.424 50.000 14.00 14.03 0.00 2.32
5809 8928 6.203723 ACTCAGCAAGTTATTCTCAACAAGAC 59.796 38.462 0.00 0.00 33.03 3.01
5871 8990 3.867493 CAGATAGCTCAGCAAATTCGTCA 59.133 43.478 0.00 0.00 0.00 4.35
5975 9094 6.652481 AGTTATCATGCTGGTATATGCTGTTC 59.348 38.462 0.00 0.00 0.00 3.18
5977 9096 4.779696 TCATGCTGGTATATGCTGTTCAA 58.220 39.130 0.00 0.00 0.00 2.69
5978 9097 4.576053 TCATGCTGGTATATGCTGTTCAAC 59.424 41.667 0.00 0.00 0.00 3.18
5979 9098 3.949132 TGCTGGTATATGCTGTTCAACA 58.051 40.909 0.00 0.00 0.00 3.33
5981 9100 3.689161 GCTGGTATATGCTGTTCAACACA 59.311 43.478 0.00 0.00 0.00 3.72
5983 9102 5.163622 GCTGGTATATGCTGTTCAACACATT 60.164 40.000 9.84 3.57 33.76 2.71
5984 9103 6.625740 GCTGGTATATGCTGTTCAACACATTT 60.626 38.462 9.84 6.25 33.76 2.32
5985 9104 7.225784 TGGTATATGCTGTTCAACACATTTT 57.774 32.000 9.84 3.65 33.76 1.82
5986 9105 8.341892 TGGTATATGCTGTTCAACACATTTTA 57.658 30.769 9.84 2.96 33.76 1.52
5987 9106 8.240682 TGGTATATGCTGTTCAACACATTTTAC 58.759 33.333 9.84 11.10 33.76 2.01
5988 9107 8.458843 GGTATATGCTGTTCAACACATTTTACT 58.541 33.333 9.84 0.00 33.76 2.24
5992 9111 8.801715 ATGCTGTTCAACACATTTTACTAAAG 57.198 30.769 0.00 0.00 33.76 1.85
5993 9112 7.990917 TGCTGTTCAACACATTTTACTAAAGA 58.009 30.769 0.00 0.00 33.76 2.52
6024 9143 8.687292 AGATGTCTTGATGTGCATTAACATAT 57.313 30.769 0.00 0.00 40.87 1.78
6298 9507 8.684973 GAAGTAGTAGAAACTTCGCAGAAATA 57.315 34.615 0.66 0.00 45.90 1.40
6299 9508 8.463456 AAGTAGTAGAAACTTCGCAGAAATAC 57.537 34.615 0.00 0.00 45.90 1.89
6300 9509 7.828712 AGTAGTAGAAACTTCGCAGAAATACT 58.171 34.615 0.00 0.00 45.90 2.12
6301 9510 6.952935 AGTAGAAACTTCGCAGAAATACTG 57.047 37.500 0.00 0.00 45.90 2.74
6302 9511 6.688578 AGTAGAAACTTCGCAGAAATACTGA 58.311 36.000 0.00 0.00 45.90 3.41
6303 9512 6.586844 AGTAGAAACTTCGCAGAAATACTGAC 59.413 38.462 0.00 0.00 45.90 3.51
6304 9513 7.737343 AGTAGAAACTTCGCAGAAATACTGACA 60.737 37.037 0.00 0.00 45.90 3.58
6349 9558 5.801350 CGGAAGCTGATGAAAAGTTATCA 57.199 39.130 0.00 0.00 32.75 2.15
6350 9559 6.369059 CGGAAGCTGATGAAAAGTTATCAT 57.631 37.500 0.00 0.00 40.14 2.45
6351 9560 6.789262 CGGAAGCTGATGAAAAGTTATCATT 58.211 36.000 0.00 0.00 37.64 2.57
6352 9561 7.253422 CGGAAGCTGATGAAAAGTTATCATTT 58.747 34.615 0.00 0.00 37.64 2.32
6353 9562 7.430502 CGGAAGCTGATGAAAAGTTATCATTTC 59.569 37.037 0.00 0.00 37.64 2.17
6354 9563 8.465201 GGAAGCTGATGAAAAGTTATCATTTCT 58.535 33.333 0.00 0.00 37.64 2.52
6355 9564 9.852091 GAAGCTGATGAAAAGTTATCATTTCTT 57.148 29.630 0.00 0.00 37.64 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.006844 TGAAAACGATGCGTCTTTACTTTGA 59.993 36.000 4.05 0.00 39.99 2.69
1 2 5.113529 GTGAAAACGATGCGTCTTTACTTTG 59.886 40.000 4.05 0.00 39.99 2.77
2 3 5.202640 GTGAAAACGATGCGTCTTTACTTT 58.797 37.500 4.05 0.00 39.99 2.66
3 4 4.271533 TGTGAAAACGATGCGTCTTTACTT 59.728 37.500 4.05 0.00 39.99 2.24
4 5 3.805422 TGTGAAAACGATGCGTCTTTACT 59.195 39.130 4.05 0.00 39.99 2.24
5 6 4.084745 TCTGTGAAAACGATGCGTCTTTAC 60.085 41.667 4.05 0.00 39.99 2.01
6 7 4.052608 TCTGTGAAAACGATGCGTCTTTA 58.947 39.130 4.05 0.00 39.99 1.85
7 8 2.869801 TCTGTGAAAACGATGCGTCTTT 59.130 40.909 4.05 0.00 39.99 2.52
8 9 2.479837 TCTGTGAAAACGATGCGTCTT 58.520 42.857 4.05 0.00 39.99 3.01
9 10 2.148916 TCTGTGAAAACGATGCGTCT 57.851 45.000 4.05 0.00 39.99 4.18
10 11 2.411547 CCTTCTGTGAAAACGATGCGTC 60.412 50.000 0.00 0.00 39.99 5.19
11 12 1.531149 CCTTCTGTGAAAACGATGCGT 59.469 47.619 0.00 0.00 43.97 5.24
12 13 1.798223 TCCTTCTGTGAAAACGATGCG 59.202 47.619 0.00 0.00 0.00 4.73
13 14 3.365364 CCTTCCTTCTGTGAAAACGATGC 60.365 47.826 0.00 0.00 0.00 3.91
14 15 3.365364 GCCTTCCTTCTGTGAAAACGATG 60.365 47.826 0.00 0.00 0.00 3.84
15 16 2.814336 GCCTTCCTTCTGTGAAAACGAT 59.186 45.455 0.00 0.00 0.00 3.73
16 17 2.218603 GCCTTCCTTCTGTGAAAACGA 58.781 47.619 0.00 0.00 0.00 3.85
17 18 1.946768 TGCCTTCCTTCTGTGAAAACG 59.053 47.619 0.00 0.00 0.00 3.60
18 19 4.097892 TCTTTGCCTTCCTTCTGTGAAAAC 59.902 41.667 0.00 0.00 0.00 2.43
19 20 4.277476 TCTTTGCCTTCCTTCTGTGAAAA 58.723 39.130 0.00 0.00 0.00 2.29
20 21 3.897239 TCTTTGCCTTCCTTCTGTGAAA 58.103 40.909 0.00 0.00 0.00 2.69
21 22 3.576078 TCTTTGCCTTCCTTCTGTGAA 57.424 42.857 0.00 0.00 0.00 3.18
22 23 3.576078 TTCTTTGCCTTCCTTCTGTGA 57.424 42.857 0.00 0.00 0.00 3.58
23 24 3.633986 ACTTTCTTTGCCTTCCTTCTGTG 59.366 43.478 0.00 0.00 0.00 3.66
24 25 3.885901 GACTTTCTTTGCCTTCCTTCTGT 59.114 43.478 0.00 0.00 0.00 3.41
25 26 3.885297 TGACTTTCTTTGCCTTCCTTCTG 59.115 43.478 0.00 0.00 0.00 3.02
26 27 4.140536 CTGACTTTCTTTGCCTTCCTTCT 58.859 43.478 0.00 0.00 0.00 2.85
27 28 3.304996 GCTGACTTTCTTTGCCTTCCTTC 60.305 47.826 0.00 0.00 0.00 3.46
28 29 2.625314 GCTGACTTTCTTTGCCTTCCTT 59.375 45.455 0.00 0.00 0.00 3.36
29 30 2.234143 GCTGACTTTCTTTGCCTTCCT 58.766 47.619 0.00 0.00 0.00 3.36
30 31 1.068954 CGCTGACTTTCTTTGCCTTCC 60.069 52.381 0.00 0.00 0.00 3.46
31 32 1.604278 ACGCTGACTTTCTTTGCCTTC 59.396 47.619 0.00 0.00 0.00 3.46
32 33 1.604278 GACGCTGACTTTCTTTGCCTT 59.396 47.619 0.00 0.00 0.00 4.35
33 34 1.230324 GACGCTGACTTTCTTTGCCT 58.770 50.000 0.00 0.00 0.00 4.75
34 35 0.110644 CGACGCTGACTTTCTTTGCC 60.111 55.000 0.00 0.00 0.00 4.52
35 36 0.722799 GCGACGCTGACTTTCTTTGC 60.723 55.000 13.73 0.00 0.00 3.68
36 37 0.110644 GGCGACGCTGACTTTCTTTG 60.111 55.000 20.77 0.00 0.00 2.77
37 38 0.531974 TGGCGACGCTGACTTTCTTT 60.532 50.000 20.77 0.00 0.00 2.52
38 39 0.531974 TTGGCGACGCTGACTTTCTT 60.532 50.000 20.77 0.00 0.00 2.52
39 40 0.531974 TTTGGCGACGCTGACTTTCT 60.532 50.000 20.77 0.00 0.00 2.52
40 41 0.384353 GTTTGGCGACGCTGACTTTC 60.384 55.000 20.77 1.05 0.00 2.62
41 42 1.092921 TGTTTGGCGACGCTGACTTT 61.093 50.000 20.77 0.00 0.00 2.66
42 43 1.092921 TTGTTTGGCGACGCTGACTT 61.093 50.000 20.77 0.00 0.00 3.01
43 44 1.092921 TTTGTTTGGCGACGCTGACT 61.093 50.000 20.77 0.00 0.00 3.41
44 45 0.928451 GTTTGTTTGGCGACGCTGAC 60.928 55.000 20.77 15.40 0.00 3.51
45 46 1.353804 GTTTGTTTGGCGACGCTGA 59.646 52.632 20.77 5.66 0.00 4.26
46 47 2.003443 CGTTTGTTTGGCGACGCTG 61.003 57.895 20.77 0.00 0.00 5.18
47 48 2.326550 CGTTTGTTTGGCGACGCT 59.673 55.556 20.77 0.00 0.00 5.07
48 49 2.724358 CCGTTTGTTTGGCGACGC 60.724 61.111 12.43 12.43 34.41 5.19
49 50 2.724358 GCCGTTTGTTTGGCGACG 60.724 61.111 0.00 0.00 42.22 5.12
54 55 0.649993 GTTGCAAGCCGTTTGTTTGG 59.350 50.000 0.00 0.00 39.08 3.28
55 56 1.060409 GTGTTGCAAGCCGTTTGTTTG 59.940 47.619 0.00 0.00 39.08 2.93
56 57 1.337260 TGTGTTGCAAGCCGTTTGTTT 60.337 42.857 0.00 0.00 39.08 2.83
57 58 0.244994 TGTGTTGCAAGCCGTTTGTT 59.755 45.000 0.00 0.00 39.08 2.83
58 59 0.244994 TTGTGTTGCAAGCCGTTTGT 59.755 45.000 0.00 0.00 39.08 2.83
59 60 0.922717 CTTGTGTTGCAAGCCGTTTG 59.077 50.000 0.00 0.00 46.68 2.93
60 61 3.344064 CTTGTGTTGCAAGCCGTTT 57.656 47.368 0.00 0.00 46.68 3.60
67 68 1.946768 GTGCCTACTCTTGTGTTGCAA 59.053 47.619 0.00 0.00 35.50 4.08
68 69 1.140852 AGTGCCTACTCTTGTGTTGCA 59.859 47.619 0.00 0.00 28.79 4.08
69 70 1.884235 AGTGCCTACTCTTGTGTTGC 58.116 50.000 0.00 0.00 28.79 4.17
70 71 2.031682 GCAAGTGCCTACTCTTGTGTTG 60.032 50.000 8.97 0.00 45.14 3.33
71 72 2.222027 GCAAGTGCCTACTCTTGTGTT 58.778 47.619 8.97 0.00 45.14 3.32
72 73 1.140852 TGCAAGTGCCTACTCTTGTGT 59.859 47.619 0.00 0.00 45.14 3.72
73 74 1.882912 TGCAAGTGCCTACTCTTGTG 58.117 50.000 0.00 0.00 45.14 3.33
74 75 2.430465 CATGCAAGTGCCTACTCTTGT 58.570 47.619 0.00 0.00 45.14 3.16
75 76 1.131883 GCATGCAAGTGCCTACTCTTG 59.868 52.381 14.21 4.04 45.78 3.02
76 77 1.457346 GCATGCAAGTGCCTACTCTT 58.543 50.000 14.21 0.00 41.18 2.85
77 78 3.165606 GCATGCAAGTGCCTACTCT 57.834 52.632 14.21 0.00 41.18 3.24
84 85 0.582960 GTTGTTTGGCATGCAAGTGC 59.417 50.000 21.36 3.60 44.31 4.40
85 86 1.937278 TGTTGTTTGGCATGCAAGTG 58.063 45.000 21.36 0.00 0.00 3.16
86 87 2.687700 TTGTTGTTTGGCATGCAAGT 57.312 40.000 21.36 0.00 0.00 3.16
87 88 2.288458 CCTTTGTTGTTTGGCATGCAAG 59.712 45.455 21.36 10.58 0.00 4.01
88 89 2.286872 CCTTTGTTGTTTGGCATGCAA 58.713 42.857 21.36 4.92 0.00 4.08
89 90 1.474677 CCCTTTGTTGTTTGGCATGCA 60.475 47.619 21.36 2.54 0.00 3.96
90 91 1.228533 CCCTTTGTTGTTTGGCATGC 58.771 50.000 9.90 9.90 0.00 4.06
91 92 2.102925 AGACCCTTTGTTGTTTGGCATG 59.897 45.455 0.00 0.00 0.00 4.06
92 93 2.397597 AGACCCTTTGTTGTTTGGCAT 58.602 42.857 0.00 0.00 0.00 4.40
93 94 1.859302 AGACCCTTTGTTGTTTGGCA 58.141 45.000 0.00 0.00 0.00 4.92
94 95 2.956333 AGTAGACCCTTTGTTGTTTGGC 59.044 45.455 0.00 0.00 0.00 4.52
95 96 3.568430 GGAGTAGACCCTTTGTTGTTTGG 59.432 47.826 0.00 0.00 0.00 3.28
96 97 3.568430 GGGAGTAGACCCTTTGTTGTTTG 59.432 47.826 0.00 0.00 45.90 2.93
97 98 3.828921 GGGAGTAGACCCTTTGTTGTTT 58.171 45.455 0.00 0.00 45.90 2.83
98 99 3.503800 GGGAGTAGACCCTTTGTTGTT 57.496 47.619 0.00 0.00 45.90 2.83
108 109 2.965562 AGGCATCTTAGGGAGTAGACC 58.034 52.381 0.00 0.00 0.00 3.85
109 110 3.827876 GGTAGGCATCTTAGGGAGTAGAC 59.172 52.174 0.00 0.00 0.00 2.59
110 111 3.727923 AGGTAGGCATCTTAGGGAGTAGA 59.272 47.826 0.00 0.00 0.00 2.59
111 112 4.120946 AGGTAGGCATCTTAGGGAGTAG 57.879 50.000 0.00 0.00 0.00 2.57
112 113 4.668812 ACTAGGTAGGCATCTTAGGGAGTA 59.331 45.833 0.00 0.00 0.00 2.59
113 114 3.467863 ACTAGGTAGGCATCTTAGGGAGT 59.532 47.826 0.00 0.00 0.00 3.85
114 115 4.120946 ACTAGGTAGGCATCTTAGGGAG 57.879 50.000 0.00 0.00 0.00 4.30
115 116 5.556339 AGATACTAGGTAGGCATCTTAGGGA 59.444 44.000 0.00 0.00 30.01 4.20
116 117 5.833340 AGATACTAGGTAGGCATCTTAGGG 58.167 45.833 0.00 0.00 30.01 3.53
117 118 5.889289 GGAGATACTAGGTAGGCATCTTAGG 59.111 48.000 0.00 0.00 32.66 2.69
118 119 5.889289 GGGAGATACTAGGTAGGCATCTTAG 59.111 48.000 0.00 0.00 32.66 2.18
119 120 5.556339 AGGGAGATACTAGGTAGGCATCTTA 59.444 44.000 0.00 0.00 32.66 2.10
120 121 4.358614 AGGGAGATACTAGGTAGGCATCTT 59.641 45.833 0.00 0.00 32.66 2.40
121 122 3.926671 AGGGAGATACTAGGTAGGCATCT 59.073 47.826 0.00 4.05 34.16 2.90
122 123 4.325084 AGGGAGATACTAGGTAGGCATC 57.675 50.000 0.00 0.00 0.00 3.91
123 124 4.108124 TCAAGGGAGATACTAGGTAGGCAT 59.892 45.833 0.00 0.00 0.00 4.40
124 125 3.465966 TCAAGGGAGATACTAGGTAGGCA 59.534 47.826 0.00 0.00 0.00 4.75
125 126 4.083565 CTCAAGGGAGATACTAGGTAGGC 58.916 52.174 0.00 0.00 44.26 3.93
126 127 5.327737 ACTCAAGGGAGATACTAGGTAGG 57.672 47.826 0.00 0.00 44.26 3.18
127 128 5.010213 GCAACTCAAGGGAGATACTAGGTAG 59.990 48.000 0.00 0.00 44.26 3.18
128 129 4.894114 GCAACTCAAGGGAGATACTAGGTA 59.106 45.833 0.00 0.00 44.26 3.08
129 130 3.707102 GCAACTCAAGGGAGATACTAGGT 59.293 47.826 0.00 0.00 44.26 3.08
130 131 3.964031 AGCAACTCAAGGGAGATACTAGG 59.036 47.826 0.00 0.00 44.26 3.02
131 132 4.892934 AGAGCAACTCAAGGGAGATACTAG 59.107 45.833 0.00 0.00 44.26 2.57
132 133 4.646945 CAGAGCAACTCAAGGGAGATACTA 59.353 45.833 0.00 0.00 44.26 1.82
133 134 3.450457 CAGAGCAACTCAAGGGAGATACT 59.550 47.826 0.00 0.00 44.26 2.12
134 135 3.431486 CCAGAGCAACTCAAGGGAGATAC 60.431 52.174 0.00 0.00 44.26 2.24
135 136 2.768527 CCAGAGCAACTCAAGGGAGATA 59.231 50.000 0.00 0.00 44.26 1.98
136 137 1.558756 CCAGAGCAACTCAAGGGAGAT 59.441 52.381 0.00 0.00 44.26 2.75
137 138 0.979665 CCAGAGCAACTCAAGGGAGA 59.020 55.000 0.00 0.00 44.26 3.71
138 139 0.676151 GCCAGAGCAACTCAAGGGAG 60.676 60.000 7.82 0.00 42.36 4.30
139 140 1.376466 GCCAGAGCAACTCAAGGGA 59.624 57.895 7.82 0.00 39.53 4.20
140 141 1.676967 GGCCAGAGCAACTCAAGGG 60.677 63.158 0.00 3.02 42.56 3.95
141 142 1.676967 GGGCCAGAGCAACTCAAGG 60.677 63.158 4.39 0.06 42.56 3.61
142 143 0.959372 CTGGGCCAGAGCAACTCAAG 60.959 60.000 29.96 0.00 42.56 3.02
143 144 1.073722 CTGGGCCAGAGCAACTCAA 59.926 57.895 29.96 0.00 42.56 3.02
144 145 2.752358 CTGGGCCAGAGCAACTCA 59.248 61.111 29.96 0.00 42.56 3.41
145 146 2.749441 GCTGGGCCAGAGCAACTC 60.749 66.667 37.07 13.52 42.56 3.01
146 147 3.255397 AGCTGGGCCAGAGCAACT 61.255 61.111 37.07 20.48 42.56 3.16
147 148 2.469465 TACAGCTGGGCCAGAGCAAC 62.469 60.000 37.07 18.43 42.56 4.17
148 149 1.778017 TTACAGCTGGGCCAGAGCAA 61.778 55.000 37.07 20.84 42.56 3.91
149 150 2.223443 TTACAGCTGGGCCAGAGCA 61.223 57.895 37.07 16.06 42.56 4.26
150 151 1.746991 GTTACAGCTGGGCCAGAGC 60.747 63.158 37.07 23.42 36.65 4.09
151 152 0.254178 ATGTTACAGCTGGGCCAGAG 59.746 55.000 37.07 27.87 32.44 3.35
152 153 0.698238 AATGTTACAGCTGGGCCAGA 59.302 50.000 37.07 14.73 32.44 3.86
153 154 1.549203 AAATGTTACAGCTGGGCCAG 58.451 50.000 29.44 29.44 34.12 4.85
154 155 1.892474 GAAAATGTTACAGCTGGGCCA 59.108 47.619 19.93 5.85 0.00 5.36
155 156 1.204704 GGAAAATGTTACAGCTGGGCC 59.795 52.381 19.93 0.00 0.00 5.80
156 157 1.892474 TGGAAAATGTTACAGCTGGGC 59.108 47.619 19.93 8.05 0.00 5.36
157 158 3.181497 CGATGGAAAATGTTACAGCTGGG 60.181 47.826 19.93 0.00 31.32 4.45
158 159 3.181497 CCGATGGAAAATGTTACAGCTGG 60.181 47.826 19.93 0.00 31.32 4.85
159 160 3.440173 ACCGATGGAAAATGTTACAGCTG 59.560 43.478 13.48 13.48 31.32 4.24
160 161 3.686016 ACCGATGGAAAATGTTACAGCT 58.314 40.909 0.00 0.00 31.32 4.24
161 162 3.485216 CGACCGATGGAAAATGTTACAGC 60.485 47.826 0.00 0.00 28.53 4.40
162 163 3.063452 CCGACCGATGGAAAATGTTACAG 59.937 47.826 0.00 0.00 28.53 2.74
163 164 3.004171 CCGACCGATGGAAAATGTTACA 58.996 45.455 0.00 0.00 30.03 2.41
164 165 2.353579 CCCGACCGATGGAAAATGTTAC 59.646 50.000 0.00 0.00 0.00 2.50
165 166 2.634600 CCCGACCGATGGAAAATGTTA 58.365 47.619 0.00 0.00 0.00 2.41
166 167 1.459450 CCCGACCGATGGAAAATGTT 58.541 50.000 0.00 0.00 0.00 2.71
167 168 1.029947 GCCCGACCGATGGAAAATGT 61.030 55.000 0.00 0.00 0.00 2.71
168 169 1.724582 GGCCCGACCGATGGAAAATG 61.725 60.000 0.00 0.00 0.00 2.32
169 170 1.453197 GGCCCGACCGATGGAAAAT 60.453 57.895 0.00 0.00 0.00 1.82
170 171 2.045731 GGCCCGACCGATGGAAAA 60.046 61.111 0.00 0.00 0.00 2.29
189 190 3.440415 GCTTTGGTAGGCCCGTGC 61.440 66.667 0.00 0.00 35.15 5.34
190 191 2.750237 GGCTTTGGTAGGCCCGTG 60.750 66.667 0.00 0.00 43.40 4.94
196 197 2.818274 GCGTCGGGCTTTGGTAGG 60.818 66.667 0.00 0.00 39.11 3.18
197 198 1.231958 TTTGCGTCGGGCTTTGGTAG 61.232 55.000 0.00 0.00 44.05 3.18
198 199 0.818445 TTTTGCGTCGGGCTTTGGTA 60.818 50.000 0.00 0.00 44.05 3.25
199 200 1.668101 TTTTTGCGTCGGGCTTTGGT 61.668 50.000 0.00 0.00 44.05 3.67
200 201 1.066587 TTTTTGCGTCGGGCTTTGG 59.933 52.632 0.00 0.00 44.05 3.28
201 202 4.719997 TTTTTGCGTCGGGCTTTG 57.280 50.000 0.00 0.00 44.05 2.77
216 217 2.600470 GCTCGGGCCCAGGTTTTT 60.600 61.111 24.92 0.00 0.00 1.94
243 244 3.825143 CCTGATTTTTAGGCCCAATGG 57.175 47.619 0.00 0.00 0.00 3.16
251 252 2.967599 GCTTGGGCCTGATTTTTAGG 57.032 50.000 4.53 0.00 38.39 2.69
266 267 4.738998 TGTGATGGGCCGGGCTTG 62.739 66.667 28.80 0.00 0.00 4.01
267 268 4.740822 GTGTGATGGGCCGGGCTT 62.741 66.667 28.80 15.95 0.00 4.35
270 271 3.910914 TTTCGTGTGATGGGCCGGG 62.911 63.158 2.18 0.00 0.00 5.73
271 272 1.922135 CTTTTCGTGTGATGGGCCGG 61.922 60.000 0.00 0.00 0.00 6.13
272 273 1.501741 CTTTTCGTGTGATGGGCCG 59.498 57.895 0.00 0.00 0.00 6.13
273 274 1.212751 GCTTTTCGTGTGATGGGCC 59.787 57.895 0.00 0.00 0.00 5.80
274 275 1.212751 GGCTTTTCGTGTGATGGGC 59.787 57.895 0.00 0.00 0.00 5.36
275 276 0.893270 TGGGCTTTTCGTGTGATGGG 60.893 55.000 0.00 0.00 0.00 4.00
276 277 0.240945 GTGGGCTTTTCGTGTGATGG 59.759 55.000 0.00 0.00 0.00 3.51
277 278 1.069022 CAGTGGGCTTTTCGTGTGATG 60.069 52.381 0.00 0.00 0.00 3.07
278 279 1.238439 CAGTGGGCTTTTCGTGTGAT 58.762 50.000 0.00 0.00 0.00 3.06
279 280 0.817634 CCAGTGGGCTTTTCGTGTGA 60.818 55.000 0.00 0.00 0.00 3.58
280 281 1.654220 CCAGTGGGCTTTTCGTGTG 59.346 57.895 0.00 0.00 0.00 3.82
281 282 1.528309 CCCAGTGGGCTTTTCGTGT 60.528 57.895 17.33 0.00 35.35 4.49
282 283 3.354678 CCCAGTGGGCTTTTCGTG 58.645 61.111 17.33 0.00 35.35 4.35
306 307 2.424956 CAGTTTAATGAAGAGGCCTGGC 59.575 50.000 12.00 11.05 0.00 4.85
307 308 2.424956 GCAGTTTAATGAAGAGGCCTGG 59.575 50.000 12.00 0.00 0.00 4.45
308 309 2.096496 CGCAGTTTAATGAAGAGGCCTG 59.904 50.000 12.00 0.00 0.00 4.85
309 310 2.027192 TCGCAGTTTAATGAAGAGGCCT 60.027 45.455 3.86 3.86 0.00 5.19
310 311 2.356135 TCGCAGTTTAATGAAGAGGCC 58.644 47.619 0.00 0.00 0.00 5.19
311 312 3.188460 TGTTCGCAGTTTAATGAAGAGGC 59.812 43.478 0.00 0.00 0.00 4.70
312 313 5.122239 TCATGTTCGCAGTTTAATGAAGAGG 59.878 40.000 0.00 0.00 0.00 3.69
313 314 6.017933 GTCATGTTCGCAGTTTAATGAAGAG 58.982 40.000 0.00 0.00 0.00 2.85
314 315 5.389411 CGTCATGTTCGCAGTTTAATGAAGA 60.389 40.000 0.00 0.00 0.00 2.87
315 316 4.783036 CGTCATGTTCGCAGTTTAATGAAG 59.217 41.667 0.00 0.00 0.00 3.02
316 317 4.377943 CCGTCATGTTCGCAGTTTAATGAA 60.378 41.667 7.34 0.00 0.00 2.57
317 318 3.124466 CCGTCATGTTCGCAGTTTAATGA 59.876 43.478 7.34 0.00 0.00 2.57
318 319 3.416277 CCGTCATGTTCGCAGTTTAATG 58.584 45.455 7.34 0.00 0.00 1.90
319 320 2.418628 CCCGTCATGTTCGCAGTTTAAT 59.581 45.455 7.34 0.00 0.00 1.40
320 321 1.801771 CCCGTCATGTTCGCAGTTTAA 59.198 47.619 7.34 0.00 0.00 1.52
321 322 1.434555 CCCGTCATGTTCGCAGTTTA 58.565 50.000 7.34 0.00 0.00 2.01
322 323 1.852067 GCCCGTCATGTTCGCAGTTT 61.852 55.000 7.34 0.00 0.00 2.66
323 324 2.325082 GCCCGTCATGTTCGCAGTT 61.325 57.895 7.34 0.00 0.00 3.16
324 325 2.742372 GCCCGTCATGTTCGCAGT 60.742 61.111 7.34 0.00 0.00 4.40
325 326 3.499737 GGCCCGTCATGTTCGCAG 61.500 66.667 0.00 3.48 0.00 5.18
328 329 2.819595 CTGGGCCCGTCATGTTCG 60.820 66.667 19.37 0.00 0.00 3.95
329 330 3.134127 GCTGGGCCCGTCATGTTC 61.134 66.667 19.37 0.00 0.00 3.18
330 331 4.740822 GGCTGGGCCCGTCATGTT 62.741 66.667 19.37 0.00 44.06 2.71
363 364 2.272471 GACCCTACCTGGCCTTGC 59.728 66.667 3.32 0.00 0.00 4.01
364 365 2.584608 CGACCCTACCTGGCCTTG 59.415 66.667 3.32 0.00 0.00 3.61
365 366 2.687566 CCGACCCTACCTGGCCTT 60.688 66.667 3.32 0.00 0.00 4.35
366 367 4.798682 CCCGACCCTACCTGGCCT 62.799 72.222 3.32 0.00 0.00 5.19
399 400 1.202806 GCTTATAGCTGGCCATGGACA 60.203 52.381 22.03 22.03 38.45 4.02
400 401 1.528129 GCTTATAGCTGGCCATGGAC 58.472 55.000 18.40 15.32 38.45 4.02
401 402 0.401738 GGCTTATAGCTGGCCATGGA 59.598 55.000 18.40 0.00 44.69 3.41
402 403 2.952714 GGCTTATAGCTGGCCATGG 58.047 57.895 5.51 7.63 44.69 3.66
406 407 0.605050 GCTCTGGCTTATAGCTGGCC 60.605 60.000 12.71 12.71 41.99 5.36
407 408 0.107456 TGCTCTGGCTTATAGCTGGC 59.893 55.000 0.00 0.00 41.99 4.85
408 409 2.424557 CATGCTCTGGCTTATAGCTGG 58.575 52.381 0.00 0.00 41.99 4.85
409 410 2.424557 CCATGCTCTGGCTTATAGCTG 58.575 52.381 0.00 0.00 41.99 4.24
410 411 1.350351 CCCATGCTCTGGCTTATAGCT 59.650 52.381 0.00 0.00 44.46 3.32
411 412 1.818642 CCCATGCTCTGGCTTATAGC 58.181 55.000 0.73 0.00 44.46 2.97
412 413 1.818642 GCCCATGCTCTGGCTTATAG 58.181 55.000 3.67 0.00 44.46 1.31
414 415 4.916358 GCCCATGCTCTGGCTTAT 57.084 55.556 3.67 0.00 44.46 1.73
424 425 3.908081 CGAATGCCCAGCCCATGC 61.908 66.667 0.00 0.00 37.95 4.06
457 458 0.819259 GTGGTCAGCTTCTGGTTGCA 60.819 55.000 0.00 0.00 31.51 4.08
477 478 3.169099 TCCTCTCCTCTCTTCTGGTTTG 58.831 50.000 0.00 0.00 0.00 2.93
486 487 4.111577 TCTTCTCTTCTCCTCTCCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
495 496 6.548321 TCTGTAAGTCTTCTTCTCTTCTCCT 58.452 40.000 0.00 0.00 35.36 3.69
496 497 6.127730 CCTCTGTAAGTCTTCTTCTCTTCTCC 60.128 46.154 0.00 0.00 35.36 3.71
497 498 6.657541 TCCTCTGTAAGTCTTCTTCTCTTCTC 59.342 42.308 0.00 0.00 35.36 2.87
498 499 6.548321 TCCTCTGTAAGTCTTCTTCTCTTCT 58.452 40.000 0.00 0.00 35.36 2.85
499 500 6.127730 CCTCCTCTGTAAGTCTTCTTCTCTTC 60.128 46.154 0.00 0.00 35.36 2.87
500 501 5.714806 CCTCCTCTGTAAGTCTTCTTCTCTT 59.285 44.000 0.00 0.00 35.36 2.85
553 554 0.251386 AAGACCTCTCTGCTCCGTGA 60.251 55.000 0.00 0.00 0.00 4.35
554 555 0.108898 CAAGACCTCTCTGCTCCGTG 60.109 60.000 0.00 0.00 0.00 4.94
577 578 1.541588 TCATGGACGAGTGACTGTCTG 59.458 52.381 9.51 6.61 35.45 3.51
580 588 1.911057 TCTCATGGACGAGTGACTGT 58.089 50.000 0.00 0.00 34.46 3.55
587 595 2.005451 CTTGCCTTTCTCATGGACGAG 58.995 52.381 0.00 0.00 0.00 4.18
836 884 1.479709 AGGCCAGTAGCTGTACAGAG 58.520 55.000 27.08 9.47 43.05 3.35
838 886 2.379972 AGTAGGCCAGTAGCTGTACAG 58.620 52.381 18.93 18.93 43.05 2.74
880 928 3.370953 CCCTTTCTCCGACTCATTCCATT 60.371 47.826 0.00 0.00 0.00 3.16
901 949 9.536510 ACCATTCTATACTAGTAATTCTCTCCC 57.463 37.037 6.70 0.00 0.00 4.30
1003 1057 1.068472 TCTCGTTTCTCTCTTGGCGTC 60.068 52.381 0.00 0.00 0.00 5.19
1033 1093 1.671261 CGTCCATGGCAGATAGCTAGC 60.671 57.143 6.96 6.62 44.79 3.42
1067 1127 2.060980 GGAGGATGACTGCTCGGGT 61.061 63.158 0.00 0.00 40.54 5.28
1130 1211 1.911766 GGACTTGGAGTCGGACCCA 60.912 63.158 12.50 12.50 45.96 4.51
1195 1276 1.203441 ATGGAGCAGCACCAAGGAGA 61.203 55.000 16.23 0.00 40.93 3.71
1254 1335 4.786425 AGAAAAGATATTGCAGGGGAGAC 58.214 43.478 0.00 0.00 0.00 3.36
1266 1347 9.615660 AGTAAAAAGGGGGAAAAGAAAAGATAT 57.384 29.630 0.00 0.00 0.00 1.63
1268 1349 7.202093 CCAGTAAAAAGGGGGAAAAGAAAAGAT 60.202 37.037 0.00 0.00 0.00 2.40
1271 1352 5.965091 TCCAGTAAAAAGGGGGAAAAGAAAA 59.035 36.000 0.00 0.00 0.00 2.29
1272 1353 5.530243 TCCAGTAAAAAGGGGGAAAAGAAA 58.470 37.500 0.00 0.00 0.00 2.52
1297 1385 2.427453 ACGGCAGAGATAGTAGTTGTGG 59.573 50.000 0.00 0.00 0.00 4.17
1308 1396 7.335422 GGATCATATATTTTTGACGGCAGAGAT 59.665 37.037 0.00 0.00 0.00 2.75
1314 1402 6.575162 AAGGGATCATATATTTTTGACGGC 57.425 37.500 0.00 0.00 0.00 5.68
1355 1598 1.098050 CAGAAAGAAATGGAGGCCCG 58.902 55.000 0.00 0.00 34.29 6.13
1356 1599 2.222227 ACAGAAAGAAATGGAGGCCC 57.778 50.000 0.00 0.00 0.00 5.80
1357 1600 5.418840 TGATTTACAGAAAGAAATGGAGGCC 59.581 40.000 0.00 0.00 0.00 5.19
1358 1601 6.515272 TGATTTACAGAAAGAAATGGAGGC 57.485 37.500 0.00 0.00 0.00 4.70
1394 1657 7.561251 TGCTAGCCAACTATTTACTGTATTGA 58.439 34.615 13.29 0.00 0.00 2.57
1396 1659 8.980481 ATTGCTAGCCAACTATTTACTGTATT 57.020 30.769 13.29 0.00 35.99 1.89
1397 1660 8.980481 AATTGCTAGCCAACTATTTACTGTAT 57.020 30.769 13.29 0.00 35.99 2.29
1398 1661 8.801882 AAATTGCTAGCCAACTATTTACTGTA 57.198 30.769 13.29 0.00 35.99 2.74
1399 1662 7.703058 AAATTGCTAGCCAACTATTTACTGT 57.297 32.000 13.29 0.00 35.99 3.55
1400 1663 8.986477 AAAAATTGCTAGCCAACTATTTACTG 57.014 30.769 13.29 0.00 35.99 2.74
1401 1664 8.802267 TGAAAAATTGCTAGCCAACTATTTACT 58.198 29.630 13.29 2.50 35.99 2.24
1409 1672 4.923281 ACGATTGAAAAATTGCTAGCCAAC 59.077 37.500 13.29 2.13 35.99 3.77
1420 1683 7.837202 AATTGCATGATGACGATTGAAAAAT 57.163 28.000 0.00 0.00 0.00 1.82
1460 1723 6.597672 TGTGATACCAAACTAAATGGCACTAG 59.402 38.462 0.00 0.00 41.89 2.57
1461 1724 6.477253 TGTGATACCAAACTAAATGGCACTA 58.523 36.000 0.00 0.00 41.89 2.74
1520 1783 9.620259 TGTCAATATGTGCCTTGTGTTATATAA 57.380 29.630 0.00 0.00 0.00 0.98
1521 1784 9.791801 ATGTCAATATGTGCCTTGTGTTATATA 57.208 29.630 0.00 0.00 0.00 0.86
1523 1786 9.271828 CTATGTCAATATGTGCCTTGTGTTATA 57.728 33.333 0.00 0.00 0.00 0.98
1525 1788 6.542005 CCTATGTCAATATGTGCCTTGTGTTA 59.458 38.462 0.00 0.00 0.00 2.41
1526 1789 5.357878 CCTATGTCAATATGTGCCTTGTGTT 59.642 40.000 0.00 0.00 0.00 3.32
1527 1790 4.883585 CCTATGTCAATATGTGCCTTGTGT 59.116 41.667 0.00 0.00 0.00 3.72
1528 1791 4.276678 CCCTATGTCAATATGTGCCTTGTG 59.723 45.833 0.00 0.00 0.00 3.33
1529 1792 4.464008 CCCTATGTCAATATGTGCCTTGT 58.536 43.478 0.00 0.00 0.00 3.16
1530 1793 3.822735 CCCCTATGTCAATATGTGCCTTG 59.177 47.826 0.00 0.00 0.00 3.61
1531 1794 3.463329 ACCCCTATGTCAATATGTGCCTT 59.537 43.478 0.00 0.00 0.00 4.35
1614 1877 2.100989 CCTGGTTTACTACTCGCTCCT 58.899 52.381 0.00 0.00 0.00 3.69
1633 1896 2.694213 ACACATAAATTTTTGCGGCCC 58.306 42.857 8.35 0.00 0.00 5.80
1636 1899 7.114882 TCATTGAACACATAAATTTTTGCGG 57.885 32.000 8.35 4.44 0.00 5.69
1637 1900 8.222433 ACATCATTGAACACATAAATTTTTGCG 58.778 29.630 8.35 2.30 0.00 4.85
1654 1917 3.507162 ACCCACTGTGAACATCATTGA 57.493 42.857 9.86 0.00 0.00 2.57
1800 2068 1.533513 TTGGAGCTGGCAATGGCAA 60.534 52.632 11.45 0.00 43.71 4.52
1837 2105 0.592637 TTTGACGCTGATTGCACAGG 59.407 50.000 6.47 0.21 43.06 4.00
1840 2108 1.398595 GTGTTTGACGCTGATTGCAC 58.601 50.000 0.00 0.00 43.06 4.57
1861 2129 2.598637 CAGATACATGTGTCAACGTCGG 59.401 50.000 22.66 1.89 0.00 4.79
1866 2134 2.222886 CGCAGCAGATACATGTGTCAAC 60.223 50.000 22.66 14.32 0.00 3.18
1973 2241 1.076485 GCTGCCCCCATGACAAGAT 60.076 57.895 0.00 0.00 0.00 2.40
2012 2280 1.185315 AGTTTGCCCACATGCATACC 58.815 50.000 0.00 0.00 42.06 2.73
2018 2286 2.030540 CAGTCAGAAGTTTGCCCACATG 60.031 50.000 0.00 0.00 0.00 3.21
2142 2414 2.814280 TTCCCTGAACTCTCGAACAC 57.186 50.000 0.00 0.00 0.00 3.32
2148 2420 3.197549 AGCTCTCATTTCCCTGAACTCTC 59.802 47.826 0.00 0.00 0.00 3.20
2226 2498 4.165779 CGTTCCTTTGCAAATGTACCATC 58.834 43.478 13.23 0.00 0.00 3.51
2413 2702 3.288964 ACTCATGAGTACCTTCCGGTAG 58.711 50.000 26.87 0.00 46.17 3.18
2473 2762 1.048601 ACACACCAAGTCTCCGACAT 58.951 50.000 0.00 0.00 34.60 3.06
2546 2835 2.306341 ATTGTCTGATCTGCACGGAG 57.694 50.000 0.00 0.00 0.00 4.63
2627 2916 0.405585 ACAAACTGGTGGCCTGCTAT 59.594 50.000 3.32 0.00 0.00 2.97
2651 2940 5.048083 GGAGCACAATTAGATTTCAACACCA 60.048 40.000 0.00 0.00 0.00 4.17
2652 2941 5.048083 TGGAGCACAATTAGATTTCAACACC 60.048 40.000 0.00 0.00 0.00 4.16
2654 2943 6.265196 AGTTGGAGCACAATTAGATTTCAACA 59.735 34.615 0.00 0.00 41.95 3.33
2655 2944 6.681777 AGTTGGAGCACAATTAGATTTCAAC 58.318 36.000 0.00 0.00 41.95 3.18
2656 2945 6.899393 AGTTGGAGCACAATTAGATTTCAA 57.101 33.333 0.00 0.00 41.95 2.69
2847 3235 4.473199 GACCGTGTTTTTCTTCATAAGCC 58.527 43.478 0.00 0.00 0.00 4.35
3128 3517 6.925718 ACAATGATCAACATCAGTATACTCCG 59.074 38.462 1.26 0.00 42.53 4.63
3129 3518 8.668510 AACAATGATCAACATCAGTATACTCC 57.331 34.615 1.26 0.00 42.53 3.85
3260 3652 3.991773 CAGAACCATTGCTCCAAATTGTG 59.008 43.478 0.00 0.00 0.00 3.33
3657 4141 3.457610 AAGTTGTTGGTTGCATCCTTG 57.542 42.857 14.81 0.00 0.00 3.61
3783 6384 0.676184 ACTGCGACTGTGACTGTGAT 59.324 50.000 0.00 0.00 0.00 3.06
3881 6985 8.531622 TGTCTGCAACACATTAATTTATTTGG 57.468 30.769 0.00 0.00 31.20 3.28
3893 6997 4.640201 ACAACTTAACTGTCTGCAACACAT 59.360 37.500 0.00 0.00 33.24 3.21
4620 7724 8.628630 TGAATGACAAGGAACACAACATAATA 57.371 30.769 0.00 0.00 0.00 0.98
4885 7996 6.348458 CCTGAAACGACAAATGCTTTCTATGA 60.348 38.462 0.00 0.00 0.00 2.15
4932 8043 0.176449 CTCATGACATCCTGCACCGA 59.824 55.000 0.00 0.00 0.00 4.69
5045 8156 0.108615 CACGGTGGAGTAGCTCAAGG 60.109 60.000 0.00 0.00 31.08 3.61
5270 8382 9.553064 AGCTCCAAGTCTATTACATTTTAGATG 57.447 33.333 0.00 0.00 0.00 2.90
5326 8438 4.642429 ACTGTTTTGACTGTACAGATCCC 58.358 43.478 29.30 14.42 41.33 3.85
5346 8458 8.046708 TGTAACAGCAATATTATCACCAAGACT 58.953 33.333 0.00 0.00 0.00 3.24
5422 8538 5.420725 TTCAGATGCTAGTACCACAACAT 57.579 39.130 0.00 0.00 0.00 2.71
5556 8674 3.986817 TGGATGGGAATTAGGCTTATGGA 59.013 43.478 0.00 0.00 0.00 3.41
5564 8682 3.203040 AGACAGGTTGGATGGGAATTAGG 59.797 47.826 0.00 0.00 0.00 2.69
5585 8703 7.854557 TGATTGTTCCAGACATTCAGAATAG 57.145 36.000 0.00 0.00 41.32 1.73
5764 8882 5.163405 TGAGTGATCTGCATAGGTAAGGAAC 60.163 44.000 0.00 0.00 0.00 3.62
5765 8883 4.962362 TGAGTGATCTGCATAGGTAAGGAA 59.038 41.667 0.00 0.00 0.00 3.36
5767 8885 4.798924 GCTGAGTGATCTGCATAGGTAAGG 60.799 50.000 0.00 0.00 35.15 2.69
5871 8990 1.371558 GGAGGGAAGTGCTTGTCGT 59.628 57.895 0.00 0.00 0.00 4.34
5932 9051 8.244494 TGATAACTAGAATATGCGAAGATTGC 57.756 34.615 0.00 0.00 0.00 3.56
5975 9094 8.836413 TCTCCTGTTCTTTAGTAAAATGTGTTG 58.164 33.333 0.00 0.00 0.00 3.33
5977 9096 9.003658 CATCTCCTGTTCTTTAGTAAAATGTGT 57.996 33.333 0.00 0.00 0.00 3.72
5978 9097 9.003658 ACATCTCCTGTTCTTTAGTAAAATGTG 57.996 33.333 0.00 0.00 32.90 3.21
5979 9098 9.220767 GACATCTCCTGTTCTTTAGTAAAATGT 57.779 33.333 0.00 0.88 38.54 2.71
5983 9102 8.647796 TCAAGACATCTCCTGTTCTTTAGTAAA 58.352 33.333 0.00 0.00 38.54 2.01
5984 9103 8.190326 TCAAGACATCTCCTGTTCTTTAGTAA 57.810 34.615 0.00 0.00 38.54 2.24
5985 9104 7.776618 TCAAGACATCTCCTGTTCTTTAGTA 57.223 36.000 0.00 0.00 38.54 1.82
5986 9105 6.672266 TCAAGACATCTCCTGTTCTTTAGT 57.328 37.500 0.00 0.00 38.54 2.24
5987 9106 7.064371 CACATCAAGACATCTCCTGTTCTTTAG 59.936 40.741 0.00 0.00 38.54 1.85
5988 9107 6.875726 CACATCAAGACATCTCCTGTTCTTTA 59.124 38.462 0.00 0.00 38.54 1.85
5989 9108 5.704515 CACATCAAGACATCTCCTGTTCTTT 59.295 40.000 0.00 0.00 38.54 2.52
5990 9109 5.243981 CACATCAAGACATCTCCTGTTCTT 58.756 41.667 0.00 0.00 38.54 2.52
5991 9110 4.829968 CACATCAAGACATCTCCTGTTCT 58.170 43.478 0.00 0.00 38.54 3.01
5992 9111 3.373439 GCACATCAAGACATCTCCTGTTC 59.627 47.826 0.00 0.00 38.54 3.18
5993 9112 3.244665 TGCACATCAAGACATCTCCTGTT 60.245 43.478 0.00 0.00 38.54 3.16
6318 9527 3.084039 TCATCAGCTTCCGCTCATTTTT 58.916 40.909 0.00 0.00 45.15 1.94
6319 9528 2.715046 TCATCAGCTTCCGCTCATTTT 58.285 42.857 0.00 0.00 45.15 1.82
6320 9529 2.408271 TCATCAGCTTCCGCTCATTT 57.592 45.000 0.00 0.00 45.15 2.32
6321 9530 2.408271 TTCATCAGCTTCCGCTCATT 57.592 45.000 0.00 0.00 45.15 2.57
6322 9531 2.408271 TTTCATCAGCTTCCGCTCAT 57.592 45.000 0.00 0.00 45.15 2.90
6323 9532 2.079158 CTTTTCATCAGCTTCCGCTCA 58.921 47.619 0.00 0.00 45.15 4.26
6324 9533 2.079925 ACTTTTCATCAGCTTCCGCTC 58.920 47.619 0.00 0.00 45.15 5.03
6325 9534 8.760541 AATGATAACTTTTCATCAGCTTCCGCT 61.761 37.037 0.00 0.00 38.83 5.52
6326 9535 2.997485 AACTTTTCATCAGCTTCCGC 57.003 45.000 0.00 0.00 0.00 5.54
6327 9536 5.801350 TGATAACTTTTCATCAGCTTCCG 57.199 39.130 0.00 0.00 0.00 4.30
6328 9537 8.465201 AGAAATGATAACTTTTCATCAGCTTCC 58.535 33.333 12.05 0.00 40.37 3.46
6329 9538 9.852091 AAGAAATGATAACTTTTCATCAGCTTC 57.148 29.630 12.05 0.00 40.37 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.