Multiple sequence alignment - TraesCS5B01G293400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G293400 chr5B 100.000 2860 0 0 1 2860 478373320 478376179 0.000000e+00 5282.0
1 TraesCS5B01G293400 chr5B 79.859 1137 161 43 279 1378 478328241 478329346 0.000000e+00 769.0
2 TraesCS5B01G293400 chr5B 79.664 595 78 29 1388 1958 478329396 478329971 3.460000e-104 388.0
3 TraesCS5B01G293400 chr5B 84.615 364 44 8 727 1084 478411186 478411543 4.530000e-93 351.0
4 TraesCS5B01G293400 chr5B 87.591 137 10 1 800 929 478361242 478361378 4.940000e-33 152.0
5 TraesCS5B01G293400 chr7B 95.667 900 37 2 1963 2860 537160954 537160055 0.000000e+00 1445.0
6 TraesCS5B01G293400 chr7D 95.556 900 35 4 1963 2860 25136611 25137507 0.000000e+00 1435.0
7 TraesCS5B01G293400 chr6D 95.238 903 33 8 1963 2860 158846501 158845604 0.000000e+00 1421.0
8 TraesCS5B01G293400 chr6D 95.117 901 38 6 1963 2859 33426171 33427069 0.000000e+00 1415.0
9 TraesCS5B01G293400 chr6B 95.506 890 39 1 1972 2860 512186051 512185162 0.000000e+00 1421.0
10 TraesCS5B01G293400 chr4A 95.328 899 34 5 1963 2860 175841635 175840744 0.000000e+00 1421.0
11 TraesCS5B01G293400 chr5D 95.122 902 35 8 1963 2860 6871771 6872667 0.000000e+00 1413.0
12 TraesCS5B01G293400 chr5D 94.801 904 38 7 1963 2860 557466491 557467391 0.000000e+00 1400.0
13 TraesCS5B01G293400 chr5D 79.877 1138 158 45 279 1377 398199896 398201001 0.000000e+00 767.0
14 TraesCS5B01G293400 chr5D 77.533 1135 172 43 279 1378 398304221 398305307 8.760000e-170 606.0
15 TraesCS5B01G293400 chr5D 88.814 295 14 15 1 279 398421789 398422080 7.590000e-91 344.0
16 TraesCS5B01G293400 chr5D 80.294 477 60 22 1388 1844 398305357 398305819 2.120000e-86 329.0
17 TraesCS5B01G293400 chr5D 83.721 258 34 7 677 929 398247728 398247982 1.320000e-58 237.0
18 TraesCS5B01G293400 chr5D 79.564 367 40 22 1388 1753 398201052 398201384 2.220000e-56 230.0
19 TraesCS5B01G293400 chr2D 95.011 902 41 4 1963 2860 31780028 31780929 0.000000e+00 1413.0
20 TraesCS5B01G293400 chr5A 79.371 1144 157 46 279 1378 503325018 503326126 0.000000e+00 732.0
21 TraesCS5B01G293400 chr5A 79.936 942 126 38 279 1184 503255635 503256549 4.020000e-178 634.0
22 TraesCS5B01G293400 chr5A 77.685 596 89 30 1388 1958 503326176 503326752 9.880000e-85 324.0
23 TraesCS5B01G293400 chr5A 92.140 229 15 2 53 281 503431549 503431774 1.280000e-83 320.0
24 TraesCS5B01G293400 chr5A 83.750 160 17 3 778 929 503400207 503400365 2.970000e-30 143.0
25 TraesCS5B01G293400 chr5A 94.737 57 3 0 1 57 503431328 503431384 3.920000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G293400 chr5B 478373320 478376179 2859 False 5282.0 5282 100.0000 1 2860 1 chr5B.!!$F2 2859
1 TraesCS5B01G293400 chr5B 478328241 478329971 1730 False 578.5 769 79.7615 279 1958 2 chr5B.!!$F4 1679
2 TraesCS5B01G293400 chr7B 537160055 537160954 899 True 1445.0 1445 95.6670 1963 2860 1 chr7B.!!$R1 897
3 TraesCS5B01G293400 chr7D 25136611 25137507 896 False 1435.0 1435 95.5560 1963 2860 1 chr7D.!!$F1 897
4 TraesCS5B01G293400 chr6D 158845604 158846501 897 True 1421.0 1421 95.2380 1963 2860 1 chr6D.!!$R1 897
5 TraesCS5B01G293400 chr6D 33426171 33427069 898 False 1415.0 1415 95.1170 1963 2859 1 chr6D.!!$F1 896
6 TraesCS5B01G293400 chr6B 512185162 512186051 889 True 1421.0 1421 95.5060 1972 2860 1 chr6B.!!$R1 888
7 TraesCS5B01G293400 chr4A 175840744 175841635 891 True 1421.0 1421 95.3280 1963 2860 1 chr4A.!!$R1 897
8 TraesCS5B01G293400 chr5D 6871771 6872667 896 False 1413.0 1413 95.1220 1963 2860 1 chr5D.!!$F1 897
9 TraesCS5B01G293400 chr5D 557466491 557467391 900 False 1400.0 1400 94.8010 1963 2860 1 chr5D.!!$F4 897
10 TraesCS5B01G293400 chr5D 398199896 398201384 1488 False 498.5 767 79.7205 279 1753 2 chr5D.!!$F5 1474
11 TraesCS5B01G293400 chr5D 398304221 398305819 1598 False 467.5 606 78.9135 279 1844 2 chr5D.!!$F6 1565
12 TraesCS5B01G293400 chr2D 31780028 31780929 901 False 1413.0 1413 95.0110 1963 2860 1 chr2D.!!$F1 897
13 TraesCS5B01G293400 chr5A 503255635 503256549 914 False 634.0 634 79.9360 279 1184 1 chr5A.!!$F1 905
14 TraesCS5B01G293400 chr5A 503325018 503326752 1734 False 528.0 732 78.5280 279 1958 2 chr5A.!!$F3 1679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.028902 CGCGATCATCCACGTAGTCA 59.971 55.0 0.0 0.0 41.61 3.41 F
1131 1186 0.039035 ATCCTTGGCTGGCGGTTTAA 59.961 50.0 0.0 0.0 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1668 0.035439 ACATCCATGACCGGTGGTTC 60.035 55.0 14.63 0.0 35.25 3.62 R
2161 2286 0.468214 TTCAACCGGTTTGGATGGCA 60.468 50.0 19.55 0.0 40.78 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.496942 AATGGATCGCCTGCTTTGG 58.503 52.632 0.00 0.00 34.31 3.28
19 20 0.323725 AATGGATCGCCTGCTTTGGT 60.324 50.000 0.00 0.00 34.31 3.67
20 21 0.546122 ATGGATCGCCTGCTTTGGTA 59.454 50.000 0.00 0.00 34.31 3.25
21 22 0.107703 TGGATCGCCTGCTTTGGTAG 60.108 55.000 0.00 0.00 34.31 3.18
22 23 0.107654 GGATCGCCTGCTTTGGTAGT 60.108 55.000 0.00 0.00 0.00 2.73
23 24 1.009829 GATCGCCTGCTTTGGTAGTG 58.990 55.000 0.00 0.00 0.00 2.74
24 25 1.026718 ATCGCCTGCTTTGGTAGTGC 61.027 55.000 0.00 0.00 0.00 4.40
25 26 2.870372 GCCTGCTTTGGTAGTGCG 59.130 61.111 0.00 0.00 0.00 5.34
26 27 1.966451 GCCTGCTTTGGTAGTGCGT 60.966 57.895 0.00 0.00 0.00 5.24
27 28 1.515521 GCCTGCTTTGGTAGTGCGTT 61.516 55.000 0.00 0.00 0.00 4.84
28 29 0.517316 CCTGCTTTGGTAGTGCGTTC 59.483 55.000 0.00 0.00 0.00 3.95
29 30 0.163788 CTGCTTTGGTAGTGCGTTCG 59.836 55.000 0.00 0.00 0.00 3.95
30 31 0.531090 TGCTTTGGTAGTGCGTTCGT 60.531 50.000 0.00 0.00 0.00 3.85
31 32 0.110823 GCTTTGGTAGTGCGTTCGTG 60.111 55.000 0.00 0.00 0.00 4.35
32 33 0.110823 CTTTGGTAGTGCGTTCGTGC 60.111 55.000 0.00 0.00 0.00 5.34
33 34 0.810426 TTTGGTAGTGCGTTCGTGCA 60.810 50.000 0.00 0.00 43.95 4.57
39 40 3.958748 TGCGTTCGTGCAAGCATA 58.041 50.000 0.00 0.00 43.02 3.14
40 41 2.465774 TGCGTTCGTGCAAGCATAT 58.534 47.368 0.00 0.00 43.02 1.78
41 42 0.096802 TGCGTTCGTGCAAGCATATG 59.903 50.000 0.00 0.00 43.02 1.78
42 43 1.196130 GCGTTCGTGCAAGCATATGC 61.196 55.000 20.36 20.36 46.58 3.14
61 62 2.376808 CTCCTGAGCTTATATGGGCG 57.623 55.000 0.00 0.00 0.00 6.13
62 63 1.895798 CTCCTGAGCTTATATGGGCGA 59.104 52.381 0.00 0.00 0.00 5.54
63 64 2.499289 CTCCTGAGCTTATATGGGCGAT 59.501 50.000 0.00 0.00 0.00 4.58
64 65 2.234661 TCCTGAGCTTATATGGGCGATG 59.765 50.000 0.00 0.00 0.00 3.84
65 66 2.234661 CCTGAGCTTATATGGGCGATGA 59.765 50.000 0.00 0.00 0.00 2.92
66 67 3.118482 CCTGAGCTTATATGGGCGATGAT 60.118 47.826 0.00 0.00 0.00 2.45
67 68 4.511527 CTGAGCTTATATGGGCGATGATT 58.488 43.478 0.00 0.00 0.00 2.57
68 69 4.507710 TGAGCTTATATGGGCGATGATTC 58.492 43.478 0.00 0.00 0.00 2.52
75 76 3.324035 GGCGATGATTCGTCTGCC 58.676 61.111 18.98 18.98 46.33 4.85
76 77 2.589492 GGCGATGATTCGTCTGCCG 61.589 63.158 18.98 3.95 46.33 5.69
77 78 2.954020 GGCGATGATTCGTCTGCCGA 62.954 60.000 18.98 0.00 46.33 5.54
78 79 0.941463 GCGATGATTCGTCTGCCGAT 60.941 55.000 4.45 0.00 46.75 4.18
79 80 1.491670 CGATGATTCGTCTGCCGATT 58.508 50.000 4.45 0.00 46.75 3.34
80 81 1.453524 CGATGATTCGTCTGCCGATTC 59.546 52.381 4.45 0.00 46.75 2.52
81 82 1.795286 GATGATTCGTCTGCCGATTCC 59.205 52.381 0.00 0.00 46.75 3.01
82 83 0.527600 TGATTCGTCTGCCGATTCCG 60.528 55.000 1.33 0.00 46.75 4.30
92 93 2.931386 CGATTCCGGATTGCGCTC 59.069 61.111 4.15 0.00 0.00 5.03
93 94 2.598632 CGATTCCGGATTGCGCTCC 61.599 63.158 4.15 7.38 0.00 4.70
94 95 2.203209 ATTCCGGATTGCGCTCCC 60.203 61.111 4.15 6.07 31.04 4.30
95 96 2.940890 GATTCCGGATTGCGCTCCCA 62.941 60.000 4.15 0.00 31.04 4.37
96 97 2.947938 ATTCCGGATTGCGCTCCCAG 62.948 60.000 4.15 1.34 31.04 4.45
97 98 4.161295 CCGGATTGCGCTCCCAGA 62.161 66.667 9.73 0.00 31.04 3.86
98 99 2.587194 CGGATTGCGCTCCCAGAG 60.587 66.667 9.73 0.00 31.04 3.35
99 100 2.203126 GGATTGCGCTCCCAGAGG 60.203 66.667 9.73 0.00 0.00 3.69
100 101 2.735772 GGATTGCGCTCCCAGAGGA 61.736 63.158 9.73 0.00 41.08 3.71
101 102 1.221840 GATTGCGCTCCCAGAGGAA 59.778 57.895 9.73 0.00 43.40 3.36
102 103 0.813210 GATTGCGCTCCCAGAGGAAG 60.813 60.000 9.73 0.00 43.40 3.46
103 104 1.267574 ATTGCGCTCCCAGAGGAAGA 61.268 55.000 9.73 0.00 43.40 2.87
104 105 1.892819 TTGCGCTCCCAGAGGAAGAG 61.893 60.000 9.73 0.00 43.40 2.85
105 106 2.355193 GCGCTCCCAGAGGAAGAGT 61.355 63.158 0.00 0.00 43.40 3.24
106 107 1.038130 GCGCTCCCAGAGGAAGAGTA 61.038 60.000 0.00 0.00 43.40 2.59
107 108 1.475403 CGCTCCCAGAGGAAGAGTAA 58.525 55.000 0.00 0.00 43.40 2.24
108 109 1.135333 CGCTCCCAGAGGAAGAGTAAC 59.865 57.143 0.00 0.00 43.40 2.50
109 110 2.462723 GCTCCCAGAGGAAGAGTAACT 58.537 52.381 0.00 0.00 43.40 2.24
110 111 2.429250 GCTCCCAGAGGAAGAGTAACTC 59.571 54.545 0.00 0.00 43.40 3.01
111 112 3.028130 CTCCCAGAGGAAGAGTAACTCC 58.972 54.545 0.00 0.00 43.40 3.85
112 113 2.655407 TCCCAGAGGAAGAGTAACTCCT 59.345 50.000 0.00 0.00 40.08 3.69
113 114 3.028130 CCCAGAGGAAGAGTAACTCCTC 58.972 54.545 9.64 9.64 46.70 3.71
118 119 5.066968 GAGGAAGAGTAACTCCTCAGTTG 57.933 47.826 12.25 0.00 45.88 3.16
119 120 4.484912 AGGAAGAGTAACTCCTCAGTTGT 58.515 43.478 0.00 0.00 43.17 3.32
120 121 5.642165 AGGAAGAGTAACTCCTCAGTTGTA 58.358 41.667 0.00 0.00 43.17 2.41
121 122 5.477637 AGGAAGAGTAACTCCTCAGTTGTAC 59.522 44.000 0.00 0.00 43.17 2.90
122 123 5.477637 GGAAGAGTAACTCCTCAGTTGTACT 59.522 44.000 0.00 0.00 43.17 2.73
123 124 6.349528 GGAAGAGTAACTCCTCAGTTGTACTC 60.350 46.154 8.72 8.72 43.17 2.59
124 125 4.696402 AGAGTAACTCCTCAGTTGTACTCG 59.304 45.833 10.20 0.00 45.37 4.18
125 126 3.757493 AGTAACTCCTCAGTTGTACTCGG 59.243 47.826 0.00 0.00 43.17 4.63
126 127 2.581216 ACTCCTCAGTTGTACTCGGA 57.419 50.000 0.00 0.00 0.00 4.55
127 128 2.161030 ACTCCTCAGTTGTACTCGGAC 58.839 52.381 0.00 0.00 0.00 4.79
128 129 2.224818 ACTCCTCAGTTGTACTCGGACT 60.225 50.000 0.00 0.00 0.00 3.85
129 130 2.420722 CTCCTCAGTTGTACTCGGACTC 59.579 54.545 0.00 0.00 0.00 3.36
130 131 1.473278 CCTCAGTTGTACTCGGACTCC 59.527 57.143 0.00 0.00 0.00 3.85
131 132 2.160205 CTCAGTTGTACTCGGACTCCA 58.840 52.381 0.00 0.00 0.00 3.86
132 133 2.160205 TCAGTTGTACTCGGACTCCAG 58.840 52.381 0.00 0.00 0.00 3.86
133 134 0.889306 AGTTGTACTCGGACTCCAGC 59.111 55.000 0.00 0.00 0.00 4.85
134 135 0.601558 GTTGTACTCGGACTCCAGCA 59.398 55.000 0.00 0.00 0.00 4.41
135 136 1.000506 GTTGTACTCGGACTCCAGCAA 59.999 52.381 0.00 0.00 0.00 3.91
136 137 1.334160 TGTACTCGGACTCCAGCAAA 58.666 50.000 0.00 0.00 0.00 3.68
137 138 1.689813 TGTACTCGGACTCCAGCAAAA 59.310 47.619 0.00 0.00 0.00 2.44
138 139 2.103432 TGTACTCGGACTCCAGCAAAAA 59.897 45.455 0.00 0.00 0.00 1.94
139 140 2.568623 ACTCGGACTCCAGCAAAAAT 57.431 45.000 0.00 0.00 0.00 1.82
140 141 3.695830 ACTCGGACTCCAGCAAAAATA 57.304 42.857 0.00 0.00 0.00 1.40
141 142 3.600388 ACTCGGACTCCAGCAAAAATAG 58.400 45.455 0.00 0.00 0.00 1.73
142 143 3.260884 ACTCGGACTCCAGCAAAAATAGA 59.739 43.478 0.00 0.00 0.00 1.98
143 144 4.080863 ACTCGGACTCCAGCAAAAATAGAT 60.081 41.667 0.00 0.00 0.00 1.98
144 145 4.843728 TCGGACTCCAGCAAAAATAGATT 58.156 39.130 0.00 0.00 0.00 2.40
145 146 4.876107 TCGGACTCCAGCAAAAATAGATTC 59.124 41.667 0.00 0.00 0.00 2.52
146 147 4.035675 CGGACTCCAGCAAAAATAGATTCC 59.964 45.833 0.00 0.00 0.00 3.01
147 148 4.949856 GGACTCCAGCAAAAATAGATTCCA 59.050 41.667 0.00 0.00 0.00 3.53
148 149 5.067023 GGACTCCAGCAAAAATAGATTCCAG 59.933 44.000 0.00 0.00 0.00 3.86
149 150 5.819991 ACTCCAGCAAAAATAGATTCCAGA 58.180 37.500 0.00 0.00 0.00 3.86
150 151 6.430007 ACTCCAGCAAAAATAGATTCCAGAT 58.570 36.000 0.00 0.00 0.00 2.90
151 152 6.894103 ACTCCAGCAAAAATAGATTCCAGATT 59.106 34.615 0.00 0.00 0.00 2.40
152 153 7.067981 ACTCCAGCAAAAATAGATTCCAGATTC 59.932 37.037 0.00 0.00 0.00 2.52
153 154 6.322201 TCCAGCAAAAATAGATTCCAGATTCC 59.678 38.462 0.00 0.00 0.00 3.01
154 155 6.462067 CCAGCAAAAATAGATTCCAGATTCCC 60.462 42.308 0.00 0.00 0.00 3.97
155 156 5.600069 AGCAAAAATAGATTCCAGATTCCCC 59.400 40.000 0.00 0.00 0.00 4.81
156 157 5.600069 GCAAAAATAGATTCCAGATTCCCCT 59.400 40.000 0.00 0.00 0.00 4.79
157 158 6.777580 GCAAAAATAGATTCCAGATTCCCCTA 59.222 38.462 0.00 0.00 0.00 3.53
158 159 7.452813 GCAAAAATAGATTCCAGATTCCCCTAT 59.547 37.037 0.00 0.00 0.00 2.57
159 160 9.018582 CAAAAATAGATTCCAGATTCCCCTATC 57.981 37.037 0.00 0.00 0.00 2.08
160 161 7.895144 AAATAGATTCCAGATTCCCCTATCA 57.105 36.000 0.00 0.00 0.00 2.15
161 162 8.474062 AAATAGATTCCAGATTCCCCTATCAT 57.526 34.615 0.00 0.00 0.00 2.45
162 163 9.580103 AAATAGATTCCAGATTCCCCTATCATA 57.420 33.333 0.00 0.00 0.00 2.15
163 164 9.580103 AATAGATTCCAGATTCCCCTATCATAA 57.420 33.333 0.00 0.00 0.00 1.90
164 165 9.755890 ATAGATTCCAGATTCCCCTATCATAAT 57.244 33.333 0.00 0.00 0.00 1.28
165 166 8.474062 AGATTCCAGATTCCCCTATCATAATT 57.526 34.615 0.00 0.00 0.00 1.40
166 167 8.555729 AGATTCCAGATTCCCCTATCATAATTC 58.444 37.037 0.00 0.00 0.00 2.17
167 168 6.299805 TCCAGATTCCCCTATCATAATTCG 57.700 41.667 0.00 0.00 0.00 3.34
168 169 5.189736 TCCAGATTCCCCTATCATAATTCGG 59.810 44.000 0.00 0.00 0.00 4.30
169 170 5.189736 CCAGATTCCCCTATCATAATTCGGA 59.810 44.000 0.00 0.00 0.00 4.55
170 171 6.109359 CAGATTCCCCTATCATAATTCGGAC 58.891 44.000 0.00 0.00 0.00 4.79
171 172 6.026186 AGATTCCCCTATCATAATTCGGACT 58.974 40.000 0.00 0.00 0.00 3.85
172 173 7.124298 CAGATTCCCCTATCATAATTCGGACTA 59.876 40.741 0.00 0.00 0.00 2.59
173 174 7.678598 AGATTCCCCTATCATAATTCGGACTAA 59.321 37.037 0.00 0.00 0.00 2.24
174 175 7.621006 TTCCCCTATCATAATTCGGACTAAA 57.379 36.000 0.00 0.00 0.00 1.85
175 176 7.808279 TCCCCTATCATAATTCGGACTAAAT 57.192 36.000 0.00 0.00 0.00 1.40
176 177 7.848128 TCCCCTATCATAATTCGGACTAAATC 58.152 38.462 0.00 0.00 0.00 2.17
177 178 7.678598 TCCCCTATCATAATTCGGACTAAATCT 59.321 37.037 0.00 0.00 0.00 2.40
178 179 7.982354 CCCCTATCATAATTCGGACTAAATCTC 59.018 40.741 0.00 0.00 0.00 2.75
179 180 8.754080 CCCTATCATAATTCGGACTAAATCTCT 58.246 37.037 0.00 0.00 0.00 3.10
180 181 9.579768 CCTATCATAATTCGGACTAAATCTCTG 57.420 37.037 0.00 0.00 0.00 3.35
183 184 7.434492 TCATAATTCGGACTAAATCTCTGACC 58.566 38.462 0.00 0.00 0.00 4.02
184 185 4.674281 ATTCGGACTAAATCTCTGACCC 57.326 45.455 0.00 0.00 0.00 4.46
185 186 3.095912 TCGGACTAAATCTCTGACCCA 57.904 47.619 0.00 0.00 0.00 4.51
186 187 3.643237 TCGGACTAAATCTCTGACCCAT 58.357 45.455 0.00 0.00 0.00 4.00
187 188 3.637229 TCGGACTAAATCTCTGACCCATC 59.363 47.826 0.00 0.00 0.00 3.51
188 189 3.243907 CGGACTAAATCTCTGACCCATCC 60.244 52.174 0.00 0.00 0.00 3.51
189 190 3.071747 GGACTAAATCTCTGACCCATCCC 59.928 52.174 0.00 0.00 0.00 3.85
190 191 2.700897 ACTAAATCTCTGACCCATCCCG 59.299 50.000 0.00 0.00 0.00 5.14
191 192 1.879575 AAATCTCTGACCCATCCCGA 58.120 50.000 0.00 0.00 0.00 5.14
192 193 2.109229 AATCTCTGACCCATCCCGAT 57.891 50.000 0.00 0.00 0.00 4.18
193 194 1.346062 ATCTCTGACCCATCCCGATG 58.654 55.000 0.00 0.00 38.51 3.84
194 195 0.261696 TCTCTGACCCATCCCGATGA 59.738 55.000 6.25 0.00 41.20 2.92
195 196 0.678395 CTCTGACCCATCCCGATGAG 59.322 60.000 6.25 0.00 41.20 2.90
196 197 0.760567 TCTGACCCATCCCGATGAGG 60.761 60.000 6.25 8.13 41.20 3.86
197 198 0.760567 CTGACCCATCCCGATGAGGA 60.761 60.000 15.13 0.00 45.00 3.71
199 200 1.059913 GACCCATCCCGATGAGGATT 58.940 55.000 15.13 0.00 44.61 3.01
200 201 1.002544 GACCCATCCCGATGAGGATTC 59.997 57.143 15.13 4.29 44.61 2.52
201 202 0.036952 CCCATCCCGATGAGGATTCG 60.037 60.000 6.25 0.00 44.61 3.34
208 209 2.697431 CGATGAGGATTCGGACTCTC 57.303 55.000 0.00 0.00 34.84 3.20
209 210 2.226330 CGATGAGGATTCGGACTCTCT 58.774 52.381 0.00 0.00 34.84 3.10
210 211 2.225491 CGATGAGGATTCGGACTCTCTC 59.775 54.545 0.00 2.21 34.84 3.20
211 212 1.669604 TGAGGATTCGGACTCTCTCG 58.330 55.000 0.00 0.00 34.84 4.04
212 213 0.948678 GAGGATTCGGACTCTCTCGG 59.051 60.000 0.00 0.00 0.00 4.63
213 214 0.547075 AGGATTCGGACTCTCTCGGA 59.453 55.000 0.00 0.00 0.00 4.55
214 215 0.948678 GGATTCGGACTCTCTCGGAG 59.051 60.000 0.00 0.00 46.87 4.63
215 216 0.309612 GATTCGGACTCTCTCGGAGC 59.690 60.000 0.00 0.00 45.48 4.70
216 217 1.104577 ATTCGGACTCTCTCGGAGCC 61.105 60.000 0.00 0.00 45.48 4.70
217 218 3.578272 CGGACTCTCTCGGAGCCG 61.578 72.222 1.74 1.74 46.41 5.52
218 219 3.894947 GGACTCTCTCGGAGCCGC 61.895 72.222 3.59 0.00 45.48 6.53
219 220 3.894947 GACTCTCTCGGAGCCGCC 61.895 72.222 3.59 0.00 45.48 6.13
234 235 4.891727 GCCCGCGATCATCCACGT 62.892 66.667 8.23 0.00 0.00 4.49
235 236 2.725641 CCCGCGATCATCCACGTA 59.274 61.111 8.23 0.00 0.00 3.57
236 237 1.371758 CCCGCGATCATCCACGTAG 60.372 63.158 8.23 0.00 0.00 3.51
238 239 0.660595 CCGCGATCATCCACGTAGTC 60.661 60.000 8.23 0.00 41.61 2.59
239 240 0.028902 CGCGATCATCCACGTAGTCA 59.971 55.000 0.00 0.00 41.61 3.41
240 241 1.478137 GCGATCATCCACGTAGTCAC 58.522 55.000 0.00 0.00 41.61 3.67
250 251 3.410946 CGTAGTCACGTACGGATCG 57.589 57.895 21.06 14.49 43.31 3.69
251 252 0.923403 CGTAGTCACGTACGGATCGA 59.077 55.000 21.06 7.51 43.31 3.59
252 253 1.071633 CGTAGTCACGTACGGATCGAG 60.072 57.143 21.06 1.39 43.31 4.04
253 254 1.260033 GTAGTCACGTACGGATCGAGG 59.740 57.143 21.06 0.02 0.00 4.63
254 255 1.298190 GTCACGTACGGATCGAGGC 60.298 63.158 21.06 0.00 0.00 4.70
255 256 2.025727 CACGTACGGATCGAGGCC 59.974 66.667 21.06 0.00 0.00 5.19
256 257 2.124403 ACGTACGGATCGAGGCCT 60.124 61.111 21.06 3.86 0.00 5.19
257 258 1.146930 ACGTACGGATCGAGGCCTA 59.853 57.895 21.06 0.00 0.00 3.93
258 259 1.162800 ACGTACGGATCGAGGCCTAC 61.163 60.000 21.06 0.00 0.00 3.18
259 260 1.573436 GTACGGATCGAGGCCTACG 59.427 63.158 4.42 12.04 0.00 3.51
260 261 1.598962 TACGGATCGAGGCCTACGG 60.599 63.158 19.88 12.45 0.00 4.02
261 262 3.671411 CGGATCGAGGCCTACGGG 61.671 72.222 19.88 5.68 0.00 5.28
262 263 2.521224 GGATCGAGGCCTACGGGT 60.521 66.667 19.88 11.81 34.45 5.28
263 264 2.562876 GGATCGAGGCCTACGGGTC 61.563 68.421 19.88 17.37 37.52 4.46
264 265 1.826921 GATCGAGGCCTACGGGTCA 60.827 63.158 19.88 5.73 40.27 4.02
265 266 1.152525 ATCGAGGCCTACGGGTCAT 60.153 57.895 19.88 7.44 40.27 3.06
266 267 1.464376 ATCGAGGCCTACGGGTCATG 61.464 60.000 19.88 0.00 40.27 3.07
267 268 2.109181 GAGGCCTACGGGTCATGC 59.891 66.667 4.42 0.00 40.27 4.06
268 269 2.687200 AGGCCTACGGGTCATGCA 60.687 61.111 1.29 0.00 40.27 3.96
269 270 2.513897 GGCCTACGGGTCATGCAC 60.514 66.667 0.00 0.00 37.14 4.57
275 276 3.550992 CGGGTCATGCACGTACGC 61.551 66.667 16.72 0.00 39.58 4.42
277 278 2.736682 GGGTCATGCACGTACGCAC 61.737 63.158 16.72 8.27 46.56 5.34
280 281 1.799916 TCATGCACGTACGCACTCG 60.800 57.895 16.72 1.43 46.56 4.18
308 309 0.465460 TTGGAGTCCTTGTGCACCAC 60.465 55.000 15.69 5.82 34.56 4.16
309 310 1.600916 GGAGTCCTTGTGCACCACC 60.601 63.158 15.69 2.42 32.73 4.61
316 317 1.402787 CTTGTGCACCACCCTTTTCT 58.597 50.000 15.69 0.00 32.73 2.52
322 323 2.693074 TGCACCACCCTTTTCTTTTCTC 59.307 45.455 0.00 0.00 0.00 2.87
325 326 1.886542 CCACCCTTTTCTTTTCTCCCG 59.113 52.381 0.00 0.00 0.00 5.14
327 328 1.778484 ACCCTTTTCTTTTCTCCCGGA 59.222 47.619 0.73 0.00 0.00 5.14
352 353 2.587753 CCACTTGTGTCGCACCGT 60.588 61.111 7.38 2.95 32.73 4.83
353 354 2.625906 CACTTGTGTCGCACCGTG 59.374 61.111 7.38 9.91 32.73 4.94
354 355 2.171079 CACTTGTGTCGCACCGTGT 61.171 57.895 14.92 7.20 33.38 4.49
355 356 1.881252 ACTTGTGTCGCACCGTGTC 60.881 57.895 0.00 0.00 32.73 3.67
356 357 1.591594 CTTGTGTCGCACCGTGTCT 60.592 57.895 0.00 0.00 32.73 3.41
357 358 1.151777 CTTGTGTCGCACCGTGTCTT 61.152 55.000 0.00 0.00 32.73 3.01
358 359 1.149361 TTGTGTCGCACCGTGTCTTC 61.149 55.000 0.00 0.00 32.73 2.87
359 360 2.354188 TGTCGCACCGTGTCTTCG 60.354 61.111 0.00 0.00 0.00 3.79
360 361 2.050714 GTCGCACCGTGTCTTCGA 60.051 61.111 0.00 0.00 0.00 3.71
361 362 1.443872 GTCGCACCGTGTCTTCGAT 60.444 57.895 0.00 0.00 0.00 3.59
379 380 3.058293 TCGATGTTGCCATCACAAGTTTC 60.058 43.478 4.20 0.00 46.54 2.78
387 388 3.813800 CCATCACAAGTTTCACACGATG 58.186 45.455 0.00 0.00 0.00 3.84
391 392 2.611751 CACAAGTTTCACACGATGGACA 59.388 45.455 0.00 0.00 0.00 4.02
402 403 2.674852 CACGATGGACACCATGAGAAAG 59.325 50.000 8.06 0.00 45.26 2.62
405 406 2.859165 TGGACACCATGAGAAAGGAC 57.141 50.000 0.00 0.00 0.00 3.85
413 414 3.181440 ACCATGAGAAAGGACTGCTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
415 416 3.558931 TGAGAAAGGACTGCTGAAACA 57.441 42.857 0.00 0.00 0.00 2.83
428 429 1.112315 TGAAACACCCACCCATGCAC 61.112 55.000 0.00 0.00 0.00 4.57
438 439 2.635338 CCATGCACGCATCCATCG 59.365 61.111 0.44 0.00 33.90 3.84
459 460 1.870580 CGTGGTAGGTTCTGCGTTTGA 60.871 52.381 0.00 0.00 0.00 2.69
488 492 4.223700 TGAGAAGGATTAGAAGAAGCTGCA 59.776 41.667 1.02 0.00 0.00 4.41
489 493 4.768583 AGAAGGATTAGAAGAAGCTGCAG 58.231 43.478 10.11 10.11 0.00 4.41
505 509 3.201290 CTGCAGCGGAGAAGACAATTAT 58.799 45.455 0.00 0.00 0.00 1.28
516 526 8.512138 CGGAGAAGACAATTATTTAACCTTTGT 58.488 33.333 0.00 0.00 33.47 2.83
534 544 8.974060 ACCTTTGTGATTTAACTAAGTGAGAA 57.026 30.769 0.00 0.00 32.96 2.87
550 569 3.982372 GAAGCACACGGATCGGCGA 62.982 63.158 13.87 13.87 0.00 5.54
569 588 3.744719 CGGCGAACTCTCCGGTGA 61.745 66.667 0.00 6.00 40.28 4.02
570 589 2.182030 GGCGAACTCTCCGGTGAG 59.818 66.667 27.71 27.71 40.17 3.51
571 590 2.507324 GCGAACTCTCCGGTGAGC 60.507 66.667 28.91 15.19 38.58 4.26
572 591 2.202492 CGAACTCTCCGGTGAGCG 60.202 66.667 28.91 21.86 38.58 5.03
573 592 2.507324 GAACTCTCCGGTGAGCGC 60.507 66.667 28.91 18.79 38.58 5.92
574 593 4.421479 AACTCTCCGGTGAGCGCG 62.421 66.667 28.91 0.00 38.58 6.86
576 595 3.506096 CTCTCCGGTGAGCGCGTA 61.506 66.667 19.82 0.00 38.58 4.42
577 596 3.736482 CTCTCCGGTGAGCGCGTAC 62.736 68.421 19.82 4.98 38.58 3.67
590 609 1.997606 GCGCGTACCTTTACAATCTGT 59.002 47.619 8.43 0.00 0.00 3.41
597 618 6.455646 GCGTACCTTTACAATCTGTCATGAAG 60.456 42.308 0.00 0.00 0.00 3.02
601 622 4.926860 TTACAATCTGTCATGAAGCACG 57.073 40.909 0.00 0.00 0.00 5.34
625 646 2.602257 AACTGCCAAGAACAAAAGCC 57.398 45.000 0.00 0.00 0.00 4.35
627 648 1.136891 ACTGCCAAGAACAAAAGCCAC 59.863 47.619 0.00 0.00 0.00 5.01
628 649 1.410153 CTGCCAAGAACAAAAGCCACT 59.590 47.619 0.00 0.00 0.00 4.00
629 650 1.408702 TGCCAAGAACAAAAGCCACTC 59.591 47.619 0.00 0.00 0.00 3.51
630 651 1.600413 GCCAAGAACAAAAGCCACTCG 60.600 52.381 0.00 0.00 0.00 4.18
631 652 1.600413 CCAAGAACAAAAGCCACTCGC 60.600 52.381 0.00 0.00 37.98 5.03
644 665 1.136110 CCACTCGCTTTGGTTTGGTTT 59.864 47.619 0.00 0.00 0.00 3.27
649 670 2.100087 TCGCTTTGGTTTGGTTTCCTTC 59.900 45.455 0.00 0.00 0.00 3.46
667 693 2.994417 GGGCATTCCGGCAAACCA 60.994 61.111 0.00 0.00 43.60 3.67
668 694 2.358372 GGGCATTCCGGCAAACCAT 61.358 57.895 0.00 0.00 43.60 3.55
669 695 1.141665 GGCATTCCGGCAAACCATC 59.858 57.895 0.00 0.00 40.76 3.51
670 696 1.603236 GGCATTCCGGCAAACCATCA 61.603 55.000 0.00 0.00 40.76 3.07
671 697 0.461135 GCATTCCGGCAAACCATCAT 59.539 50.000 0.00 0.00 34.57 2.45
672 698 1.536709 GCATTCCGGCAAACCATCATC 60.537 52.381 0.00 0.00 34.57 2.92
673 699 1.750206 CATTCCGGCAAACCATCATCA 59.250 47.619 0.00 0.00 34.57 3.07
674 700 1.462616 TTCCGGCAAACCATCATCAG 58.537 50.000 0.00 0.00 34.57 2.90
675 701 1.031571 TCCGGCAAACCATCATCAGC 61.032 55.000 0.00 0.00 34.57 4.26
693 723 1.480137 AGCTCAGCTGCTACCACTTAG 59.520 52.381 9.47 0.00 42.10 2.18
724 754 2.024176 ATTGGAAACTCGGGATCGTG 57.976 50.000 0.00 0.00 37.69 4.35
725 755 0.682852 TTGGAAACTCGGGATCGTGT 59.317 50.000 0.00 0.00 43.68 4.49
756 787 0.538057 ACACCTTGGGCATGTGTCTG 60.538 55.000 0.00 0.00 38.83 3.51
758 789 0.538057 ACCTTGGGCATGTGTCTGTG 60.538 55.000 0.00 0.00 0.00 3.66
759 790 0.250858 CCTTGGGCATGTGTCTGTGA 60.251 55.000 0.00 0.00 0.00 3.58
760 791 0.877071 CTTGGGCATGTGTCTGTGAC 59.123 55.000 0.00 0.00 0.00 3.67
762 793 2.680913 GGGCATGTGTCTGTGACGC 61.681 63.158 4.52 4.52 42.60 5.19
764 795 1.669115 GCATGTGTCTGTGACGCCT 60.669 57.895 8.50 0.00 41.72 5.52
765 796 0.389817 GCATGTGTCTGTGACGCCTA 60.390 55.000 8.50 0.00 41.72 3.93
766 797 1.740380 GCATGTGTCTGTGACGCCTAT 60.740 52.381 8.50 0.00 41.72 2.57
770 801 2.422479 TGTGTCTGTGACGCCTATAGTC 59.578 50.000 8.50 0.00 41.72 2.59
788 819 8.030106 CCTATAGTCGGAATACTTTCTCCATTC 58.970 40.741 0.00 0.00 32.16 2.67
811 842 2.897271 TCCCCATTGCTAGCTTTTCA 57.103 45.000 17.23 0.00 0.00 2.69
815 846 2.482490 CCCATTGCTAGCTTTTCATGCC 60.482 50.000 17.23 0.00 0.00 4.40
824 855 3.694926 AGCTTTTCATGCCTCTTTAGCT 58.305 40.909 0.00 0.00 33.22 3.32
828 859 5.776744 CTTTTCATGCCTCTTTAGCTTTGT 58.223 37.500 0.00 0.00 0.00 2.83
875 907 4.157656 GTGCTAACTCCACATGCCAAATTA 59.842 41.667 0.00 0.00 33.50 1.40
915 953 6.897413 ACCTTTCATATGCTTATTTCCCAAGT 59.103 34.615 0.00 0.00 0.00 3.16
918 958 9.305925 CTTTCATATGCTTATTTCCCAAGTTTC 57.694 33.333 0.00 0.00 0.00 2.78
933 973 6.951198 TCCCAAGTTTCCTTTCATATGCTTTA 59.049 34.615 0.00 0.00 0.00 1.85
936 976 6.456795 AGTTTCCTTTCATATGCTTTAGGC 57.543 37.500 0.00 0.00 42.22 3.93
990 1036 1.462731 TTGCACACACTTGGATGCCC 61.463 55.000 0.00 0.00 37.26 5.36
1009 1063 6.763715 TGCCCAGTTCCTGACTATAAATAT 57.236 37.500 0.00 0.00 36.65 1.28
1011 1065 7.676947 TGCCCAGTTCCTGACTATAAATATAC 58.323 38.462 0.00 0.00 36.65 1.47
1021 1075 7.038302 CCTGACTATAAATATACCCTTGGAGCA 60.038 40.741 0.00 0.00 0.00 4.26
1041 1095 0.620556 TCAGGAGAAGGCCCATGAAC 59.379 55.000 0.00 0.00 0.00 3.18
1044 1098 1.213296 GGAGAAGGCCCATGAACCTA 58.787 55.000 0.00 0.00 34.31 3.08
1063 1117 5.574188 ACCTAAAACATCTTGCCTCATCTT 58.426 37.500 0.00 0.00 0.00 2.40
1068 1122 5.426689 AACATCTTGCCTCATCTTAGTGA 57.573 39.130 0.00 0.00 0.00 3.41
1072 1126 5.946942 TCTTGCCTCATCTTAGTGATCTT 57.053 39.130 0.00 0.00 32.05 2.40
1085 1139 1.329906 GTGATCTTCTCATGCCAAGCG 59.670 52.381 0.00 0.00 35.97 4.68
1086 1140 0.307146 GATCTTCTCATGCCAAGCGC 59.693 55.000 0.00 0.00 38.31 5.92
1089 1143 1.302752 TTCTCATGCCAAGCGCTGT 60.303 52.632 12.58 0.00 38.78 4.40
1112 1167 3.560453 GCCACCACATTCCCTACTTGTTA 60.560 47.826 0.00 0.00 0.00 2.41
1119 1174 5.590259 CACATTCCCTACTTGTTATCCTTGG 59.410 44.000 0.00 0.00 0.00 3.61
1120 1175 3.926058 TCCCTACTTGTTATCCTTGGC 57.074 47.619 0.00 0.00 0.00 4.52
1121 1176 3.460825 TCCCTACTTGTTATCCTTGGCT 58.539 45.455 0.00 0.00 0.00 4.75
1125 1180 0.734889 CTTGTTATCCTTGGCTGGCG 59.265 55.000 0.00 0.00 0.00 5.69
1130 1185 0.913205 TATCCTTGGCTGGCGGTTTA 59.087 50.000 0.00 0.00 0.00 2.01
1131 1186 0.039035 ATCCTTGGCTGGCGGTTTAA 59.961 50.000 0.00 0.00 0.00 1.52
1140 1195 0.250553 TGGCGGTTTAACCACCTCTG 60.251 55.000 20.27 1.79 41.08 3.35
1142 1197 1.543871 GGCGGTTTAACCACCTCTGAA 60.544 52.381 13.49 0.00 37.49 3.02
1143 1198 1.804748 GCGGTTTAACCACCTCTGAAG 59.195 52.381 14.97 0.00 38.47 3.02
1147 1202 4.562757 CGGTTTAACCACCTCTGAAGATCA 60.563 45.833 14.97 0.00 38.47 2.92
1159 1214 7.225145 CACCTCTGAAGATCAAAGATGAAGATC 59.775 40.741 0.00 0.00 39.49 2.75
1161 1216 5.752472 TCTGAAGATCAAAGATGAAGATCGC 59.248 40.000 0.00 0.00 42.21 4.58
1163 1218 4.686191 AGATCAAAGATGAAGATCGCCT 57.314 40.909 0.00 0.00 42.21 5.52
1165 1220 6.166984 AGATCAAAGATGAAGATCGCCTAA 57.833 37.500 0.00 0.00 42.21 2.69
1167 1222 4.122776 TCAAAGATGAAGATCGCCTAAGC 58.877 43.478 0.00 0.00 33.34 3.09
1168 1223 3.827008 AAGATGAAGATCGCCTAAGCA 57.173 42.857 0.00 0.00 39.83 3.91
1184 1239 1.743252 GCAACGGAGCTCCTGAAGG 60.743 63.158 29.73 16.44 0.00 3.46
1185 1240 1.743252 CAACGGAGCTCCTGAAGGC 60.743 63.158 29.73 2.36 34.44 4.35
1186 1241 1.915769 AACGGAGCTCCTGAAGGCT 60.916 57.895 29.73 2.81 41.88 4.58
1189 1244 1.220477 GGAGCTCCTGAAGGCTGTC 59.780 63.158 26.25 0.00 39.05 3.51
1190 1245 1.548357 GGAGCTCCTGAAGGCTGTCA 61.548 60.000 26.25 0.00 39.05 3.58
1194 1252 0.534412 CTCCTGAAGGCTGTCACGAT 59.466 55.000 0.00 0.00 34.44 3.73
1203 1261 0.441533 GCTGTCACGATGTGCAAGAG 59.558 55.000 0.00 0.00 32.98 2.85
1214 1272 4.069869 GCAAGAGCAAGACCAGCA 57.930 55.556 0.00 0.00 41.58 4.41
1216 1274 0.450983 GCAAGAGCAAGACCAGCATC 59.549 55.000 0.00 0.00 41.58 3.91
1239 1297 3.092511 GGCCAGGCTCCTCATCCA 61.093 66.667 12.43 0.00 0.00 3.41
1240 1298 2.683465 GGCCAGGCTCCTCATCCAA 61.683 63.158 12.43 0.00 0.00 3.53
1242 1300 1.153005 CCAGGCTCCTCATCCAAGC 60.153 63.158 0.00 0.00 35.27 4.01
1246 1304 1.227497 GCTCCTCATCCAAGCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
1260 1318 2.632541 CTCGCTCCGCCGTAGTAG 59.367 66.667 0.00 0.00 0.00 2.57
1261 1319 3.524330 CTCGCTCCGCCGTAGTAGC 62.524 68.421 0.00 0.00 0.00 3.58
1268 1326 4.137872 GCCGTAGTAGCGCCACCA 62.138 66.667 2.29 0.00 0.00 4.17
1294 1352 0.543749 CCTTCTCCCACAGGATCCAC 59.456 60.000 15.82 0.00 42.93 4.02
1295 1353 1.279496 CTTCTCCCACAGGATCCACA 58.721 55.000 15.82 0.00 42.93 4.17
1296 1354 1.842562 CTTCTCCCACAGGATCCACAT 59.157 52.381 15.82 0.00 42.93 3.21
1297 1355 2.866923 TCTCCCACAGGATCCACATA 57.133 50.000 15.82 0.00 42.93 2.29
1300 1358 2.366916 CTCCCACAGGATCCACATACTC 59.633 54.545 15.82 0.00 42.93 2.59
1301 1359 2.023015 TCCCACAGGATCCACATACTCT 60.023 50.000 15.82 0.00 37.19 3.24
1302 1360 2.366916 CCCACAGGATCCACATACTCTC 59.633 54.545 15.82 0.00 33.47 3.20
1303 1361 3.033909 CCACAGGATCCACATACTCTCA 58.966 50.000 15.82 0.00 0.00 3.27
1312 1370 1.593750 CATACTCTCAGCTGCCGCC 60.594 63.158 9.47 0.00 36.60 6.13
1327 1385 2.509561 GCCGACCGGAAGAAGAGC 60.510 66.667 9.46 0.00 37.50 4.09
1332 1390 2.187946 CCGGAAGAAGAGCGCCAT 59.812 61.111 2.29 0.00 0.00 4.40
1334 1392 1.153568 CGGAAGAAGAGCGCCATGA 60.154 57.895 2.29 0.00 0.00 3.07
1339 1397 0.543277 AGAAGAGCGCCATGATGGAA 59.457 50.000 17.22 0.00 40.96 3.53
1342 1400 0.182061 AGAGCGCCATGATGGAATGT 59.818 50.000 17.22 0.00 40.96 2.71
1349 1407 3.018856 GCCATGATGGAATGTCACAAGA 58.981 45.455 17.22 0.00 40.96 3.02
1390 1488 2.886081 GAGAAGACACTCGTGATGCAT 58.114 47.619 0.00 0.00 0.00 3.96
1416 1514 6.149973 TGTTTGATCAAGAGAATGATGGTGAC 59.850 38.462 8.41 0.00 40.08 3.67
1440 1538 1.226686 GCTGCACTGACTGGACACTG 61.227 60.000 0.00 0.00 0.00 3.66
1457 1555 1.303236 TGCACCCCATCTTCAACGG 60.303 57.895 0.00 0.00 0.00 4.44
1466 1564 1.061131 CATCTTCAACGGCGATGACAC 59.939 52.381 19.72 0.00 37.35 3.67
1472 1570 0.534203 AACGGCGATGACACCAACTT 60.534 50.000 16.62 0.00 0.00 2.66
1498 1596 0.784178 CACCGACGAGTGTGATGTTG 59.216 55.000 0.00 0.00 34.37 3.33
1499 1597 0.671796 ACCGACGAGTGTGATGTTGA 59.328 50.000 0.00 0.00 0.00 3.18
1500 1598 1.272490 ACCGACGAGTGTGATGTTGAT 59.728 47.619 0.00 0.00 0.00 2.57
1501 1599 1.655597 CCGACGAGTGTGATGTTGATG 59.344 52.381 0.00 0.00 0.00 3.07
1502 1600 1.655597 CGACGAGTGTGATGTTGATGG 59.344 52.381 0.00 0.00 0.00 3.51
1503 1601 2.688507 GACGAGTGTGATGTTGATGGT 58.311 47.619 0.00 0.00 0.00 3.55
1504 1602 2.413112 GACGAGTGTGATGTTGATGGTG 59.587 50.000 0.00 0.00 0.00 4.17
1505 1603 2.037121 ACGAGTGTGATGTTGATGGTGA 59.963 45.455 0.00 0.00 0.00 4.02
1506 1604 2.669924 CGAGTGTGATGTTGATGGTGAG 59.330 50.000 0.00 0.00 0.00 3.51
1507 1605 3.005554 GAGTGTGATGTTGATGGTGAGG 58.994 50.000 0.00 0.00 0.00 3.86
1508 1606 2.373169 AGTGTGATGTTGATGGTGAGGT 59.627 45.455 0.00 0.00 0.00 3.85
1509 1607 2.744202 GTGTGATGTTGATGGTGAGGTC 59.256 50.000 0.00 0.00 0.00 3.85
1512 1610 2.301583 TGATGTTGATGGTGAGGTCGAA 59.698 45.455 0.00 0.00 0.00 3.71
1515 1613 1.002087 GTTGATGGTGAGGTCGAAGGT 59.998 52.381 0.00 0.00 0.00 3.50
1529 1627 5.363868 AGGTCGAAGGTAATGAAGATGATGA 59.636 40.000 0.00 0.00 0.00 2.92
1547 1645 1.743394 TGACGATGTGCTACTCGATGT 59.257 47.619 8.89 0.00 38.24 3.06
1562 1660 2.227865 TCGATGTGTGTGATGAAGACGA 59.772 45.455 0.00 0.00 0.00 4.20
1564 1662 2.880963 TGTGTGTGATGAAGACGACA 57.119 45.000 0.00 0.00 0.00 4.35
1569 1667 2.987149 GTGTGATGAAGACGACAACGAT 59.013 45.455 0.00 0.00 42.66 3.73
1570 1668 2.986479 TGTGATGAAGACGACAACGATG 59.014 45.455 0.00 0.00 42.66 3.84
1593 1691 2.241176 ACCACCGGTCATGGATGTAATT 59.759 45.455 16.09 0.00 39.87 1.40
1594 1692 3.456644 ACCACCGGTCATGGATGTAATTA 59.543 43.478 16.09 0.00 39.87 1.40
1628 1726 2.091885 AGGCTGAAGGTTTGGAGTTCAA 60.092 45.455 0.00 0.00 30.00 2.69
1635 1733 5.067674 TGAAGGTTTGGAGTTCAACATTGAG 59.932 40.000 0.00 0.00 38.61 3.02
1653 1751 0.309302 AGAACGAGATCGATCAGGCG 59.691 55.000 26.47 25.12 42.50 5.52
1656 1754 2.048690 GAGATCGATCAGGCGGCC 60.049 66.667 26.47 12.11 0.00 6.13
1671 1769 1.873903 GCGGCCGATATGTTCATCACT 60.874 52.381 33.48 0.00 0.00 3.41
1709 1807 6.523840 GGATGAATCAGAGCTTCTAGTGATT 58.476 40.000 4.23 4.23 41.31 2.57
1715 1813 5.858381 TCAGAGCTTCTAGTGATTTTGTGT 58.142 37.500 0.00 0.00 0.00 3.72
1717 1815 5.468072 CAGAGCTTCTAGTGATTTTGTGTGT 59.532 40.000 0.00 0.00 0.00 3.72
1718 1816 5.698545 AGAGCTTCTAGTGATTTTGTGTGTC 59.301 40.000 0.00 0.00 0.00 3.67
1719 1817 5.368145 AGCTTCTAGTGATTTTGTGTGTCA 58.632 37.500 0.00 0.00 0.00 3.58
1722 1820 6.580041 GCTTCTAGTGATTTTGTGTGTCAATG 59.420 38.462 0.00 0.00 35.84 2.82
1727 1825 6.959361 AGTGATTTTGTGTGTCAATGTCTAC 58.041 36.000 0.00 0.00 35.84 2.59
1731 1829 2.766313 TGTGTGTCAATGTCTACCTGC 58.234 47.619 0.00 0.00 0.00 4.85
1735 1833 2.160417 GTGTCAATGTCTACCTGCTTGC 59.840 50.000 0.00 0.00 0.00 4.01
1741 1839 1.077501 TCTACCTGCTTGCATGGCC 60.078 57.895 0.00 0.00 0.00 5.36
1768 1878 4.541779 CTGAAGCTTATACGGACTGCTAG 58.458 47.826 0.00 0.00 33.28 3.42
1774 1884 4.756135 GCTTATACGGACTGCTAGTAGAGT 59.244 45.833 15.37 12.82 0.00 3.24
1778 1888 3.947868 ACGGACTGCTAGTAGAGTTACA 58.052 45.455 15.37 0.00 31.96 2.41
1779 1889 4.330250 ACGGACTGCTAGTAGAGTTACAA 58.670 43.478 15.37 0.00 31.96 2.41
1786 1897 8.982091 ACTGCTAGTAGAGTTACAATAGATGA 57.018 34.615 15.37 0.00 31.96 2.92
1797 1908 6.384015 AGTTACAATAGATGATGGGTGTGAGA 59.616 38.462 0.00 0.00 0.00 3.27
1798 1909 5.028549 ACAATAGATGATGGGTGTGAGAC 57.971 43.478 0.00 0.00 0.00 3.36
1799 1910 4.718774 ACAATAGATGATGGGTGTGAGACT 59.281 41.667 0.00 0.00 0.00 3.24
1805 1922 3.440127 TGATGGGTGTGAGACTGATACA 58.560 45.455 0.00 0.00 0.00 2.29
1806 1923 3.195610 TGATGGGTGTGAGACTGATACAC 59.804 47.826 0.00 0.00 42.90 2.90
1810 1927 4.645136 TGGGTGTGAGACTGATACACTATC 59.355 45.833 11.71 5.64 43.11 2.08
1827 1944 6.982899 ACACTATCTAGGTAGGGAGAAAAGA 58.017 40.000 19.45 0.00 0.00 2.52
1829 1946 7.342541 ACACTATCTAGGTAGGGAGAAAAGAAC 59.657 40.741 19.45 0.00 0.00 3.01
1850 1967 3.168773 GGACATATGTTGGCCGTGT 57.831 52.632 10.30 0.00 45.98 4.49
1855 1972 1.935873 CATATGTTGGCCGTGTGAGAG 59.064 52.381 0.00 0.00 0.00 3.20
1860 1977 1.000506 GTTGGCCGTGTGAGAGTAGAA 59.999 52.381 0.00 0.00 0.00 2.10
1861 1978 1.557099 TGGCCGTGTGAGAGTAGAAT 58.443 50.000 0.00 0.00 0.00 2.40
1862 1979 2.730382 TGGCCGTGTGAGAGTAGAATA 58.270 47.619 0.00 0.00 0.00 1.75
1863 1980 3.093814 TGGCCGTGTGAGAGTAGAATAA 58.906 45.455 0.00 0.00 0.00 1.40
1864 1981 3.704566 TGGCCGTGTGAGAGTAGAATAAT 59.295 43.478 0.00 0.00 0.00 1.28
1866 1983 4.745620 GGCCGTGTGAGAGTAGAATAATTC 59.254 45.833 0.00 0.00 0.00 2.17
1870 1987 7.064728 GCCGTGTGAGAGTAGAATAATTCTTTT 59.935 37.037 0.00 0.00 41.14 2.27
1913 2030 5.371115 TTTCTTTGGGAGAAATAGCAACG 57.629 39.130 0.00 0.00 46.69 4.10
1914 2031 4.015872 TCTTTGGGAGAAATAGCAACGT 57.984 40.909 0.00 0.00 0.00 3.99
1916 2033 2.107950 TGGGAGAAATAGCAACGTGG 57.892 50.000 0.00 0.00 0.00 4.94
1917 2034 1.349688 TGGGAGAAATAGCAACGTGGT 59.650 47.619 0.00 0.00 0.00 4.16
1918 2035 2.568062 TGGGAGAAATAGCAACGTGGTA 59.432 45.455 0.00 0.00 34.60 3.25
1920 2037 3.369157 GGGAGAAATAGCAACGTGGTAGT 60.369 47.826 0.00 0.00 33.50 2.73
1921 2038 4.142093 GGGAGAAATAGCAACGTGGTAGTA 60.142 45.833 0.00 0.00 33.50 1.82
1923 2040 5.870978 GGAGAAATAGCAACGTGGTAGTAAA 59.129 40.000 0.00 0.00 33.50 2.01
1924 2041 6.369615 GGAGAAATAGCAACGTGGTAGTAAAA 59.630 38.462 0.00 0.00 33.50 1.52
1925 2042 7.125536 AGAAATAGCAACGTGGTAGTAAAAC 57.874 36.000 0.00 0.00 33.50 2.43
1927 2044 6.476243 AATAGCAACGTGGTAGTAAAACAG 57.524 37.500 0.00 0.00 33.50 3.16
1928 2045 3.800531 AGCAACGTGGTAGTAAAACAGT 58.199 40.909 0.00 0.00 0.00 3.55
1929 2046 4.947645 AGCAACGTGGTAGTAAAACAGTA 58.052 39.130 0.00 0.00 0.00 2.74
1930 2047 4.746611 AGCAACGTGGTAGTAAAACAGTAC 59.253 41.667 0.00 0.00 32.96 2.73
1931 2048 4.746611 GCAACGTGGTAGTAAAACAGTACT 59.253 41.667 0.00 0.00 37.98 2.73
1996 2114 2.711978 GGTTTTACCCCAGCCTCTAG 57.288 55.000 0.00 0.00 30.04 2.43
2068 2187 5.244178 ACAAGTCTCCAAGTCTCGAAGTATT 59.756 40.000 0.00 0.00 0.00 1.89
2161 2286 6.942163 ACATGCCTATCCTATTACATGACT 57.058 37.500 0.00 0.00 38.55 3.41
2206 2331 1.051812 CCGAGCTACCATCTCCCATT 58.948 55.000 0.00 0.00 0.00 3.16
2262 2387 0.393944 TCGGAGTGAGTAGCGACCAT 60.394 55.000 0.00 0.00 0.00 3.55
2265 2390 2.350868 CGGAGTGAGTAGCGACCATATG 60.351 54.545 0.00 0.00 0.00 1.78
2267 2392 2.294791 GAGTGAGTAGCGACCATATGCT 59.705 50.000 0.00 0.00 45.04 3.79
2321 2446 5.458452 GCAAAAAGTGAATGTTCGTTGATCA 59.542 36.000 0.00 0.00 0.00 2.92
2420 2546 1.060729 TCGGAGTCAACCCCATCAAA 58.939 50.000 0.00 0.00 0.00 2.69
2598 2724 4.717233 ATTGCGTTTTGCCAGATTATCA 57.283 36.364 0.00 0.00 45.60 2.15
2677 2804 2.359848 ACCTTTACTTTCCAAACGTGCC 59.640 45.455 0.00 0.00 0.00 5.01
2693 2820 1.139853 GTGCCTCGAGGAAGGAATGAT 59.860 52.381 35.69 0.00 38.87 2.45
2713 2840 4.645136 TGATGCTAGAGTTTATGACGTCCT 59.355 41.667 14.12 5.73 0.00 3.85
2742 2869 0.250124 ATTTGACCGAGAACACGCCA 60.250 50.000 0.00 0.00 0.00 5.69
2775 2902 5.880901 AGTTTCCAATACAACTGATCTGGT 58.119 37.500 4.49 0.00 31.80 4.00
2854 2982 1.344065 TTTCCAACTAGCGTCCTCCA 58.656 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.323725 ACCAAAGCAGGCGATCCATT 60.324 50.000 0.00 0.00 33.74 3.16
1 2 0.546122 TACCAAAGCAGGCGATCCAT 59.454 50.000 0.00 0.00 33.74 3.41
3 4 0.107654 ACTACCAAAGCAGGCGATCC 60.108 55.000 0.00 0.00 0.00 3.36
4 5 1.009829 CACTACCAAAGCAGGCGATC 58.990 55.000 0.00 0.00 0.00 3.69
5 6 1.026718 GCACTACCAAAGCAGGCGAT 61.027 55.000 0.00 0.00 0.00 4.58
6 7 1.671054 GCACTACCAAAGCAGGCGA 60.671 57.895 0.00 0.00 0.00 5.54
7 8 2.870372 GCACTACCAAAGCAGGCG 59.130 61.111 0.00 0.00 0.00 5.52
8 9 1.515521 AACGCACTACCAAAGCAGGC 61.516 55.000 0.00 0.00 0.00 4.85
9 10 0.517316 GAACGCACTACCAAAGCAGG 59.483 55.000 0.00 0.00 0.00 4.85
10 11 0.163788 CGAACGCACTACCAAAGCAG 59.836 55.000 0.00 0.00 0.00 4.24
11 12 0.531090 ACGAACGCACTACCAAAGCA 60.531 50.000 0.00 0.00 0.00 3.91
12 13 0.110823 CACGAACGCACTACCAAAGC 60.111 55.000 0.00 0.00 0.00 3.51
13 14 0.110823 GCACGAACGCACTACCAAAG 60.111 55.000 0.00 0.00 0.00 2.77
14 15 0.810426 TGCACGAACGCACTACCAAA 60.810 50.000 0.00 0.00 36.86 3.28
15 16 0.810426 TTGCACGAACGCACTACCAA 60.810 50.000 0.00 0.00 42.87 3.67
16 17 1.218875 CTTGCACGAACGCACTACCA 61.219 55.000 0.00 0.00 42.87 3.25
17 18 1.491563 CTTGCACGAACGCACTACC 59.508 57.895 0.00 0.00 42.87 3.18
18 19 1.154654 GCTTGCACGAACGCACTAC 60.155 57.895 0.00 0.00 42.87 2.73
19 20 0.948623 ATGCTTGCACGAACGCACTA 60.949 50.000 0.00 0.00 42.87 2.74
20 21 0.948623 TATGCTTGCACGAACGCACT 60.949 50.000 0.00 0.00 42.87 4.40
21 22 0.096976 ATATGCTTGCACGAACGCAC 59.903 50.000 0.00 0.00 42.87 5.34
22 23 0.096802 CATATGCTTGCACGAACGCA 59.903 50.000 0.00 0.00 41.03 5.24
23 24 1.196130 GCATATGCTTGCACGAACGC 61.196 55.000 20.64 0.00 42.31 4.84
24 25 2.845600 GCATATGCTTGCACGAACG 58.154 52.632 20.64 0.00 42.31 3.95
42 43 1.895798 TCGCCCATATAAGCTCAGGAG 59.104 52.381 0.00 0.00 0.00 3.69
43 44 2.009681 TCGCCCATATAAGCTCAGGA 57.990 50.000 0.00 0.00 0.00 3.86
44 45 2.234661 TCATCGCCCATATAAGCTCAGG 59.765 50.000 0.00 0.00 0.00 3.86
45 46 3.599730 TCATCGCCCATATAAGCTCAG 57.400 47.619 0.00 0.00 0.00 3.35
46 47 4.507710 GAATCATCGCCCATATAAGCTCA 58.492 43.478 0.00 0.00 0.00 4.26
47 48 3.553511 CGAATCATCGCCCATATAAGCTC 59.446 47.826 0.00 0.00 42.96 4.09
48 49 3.525537 CGAATCATCGCCCATATAAGCT 58.474 45.455 0.00 0.00 42.96 3.74
49 50 3.933155 CGAATCATCGCCCATATAAGC 57.067 47.619 0.00 0.00 42.96 3.09
75 76 2.598632 GGAGCGCAATCCGGAATCG 61.599 63.158 9.01 13.62 37.44 3.34
76 77 2.254464 GGGAGCGCAATCCGGAATC 61.254 63.158 9.01 0.00 40.56 2.52
77 78 2.203209 GGGAGCGCAATCCGGAAT 60.203 61.111 9.01 0.00 40.56 3.01
78 79 3.680620 CTGGGAGCGCAATCCGGAA 62.681 63.158 9.01 0.00 40.56 4.30
79 80 4.161295 CTGGGAGCGCAATCCGGA 62.161 66.667 6.61 6.61 40.56 5.14
80 81 4.161295 TCTGGGAGCGCAATCCGG 62.161 66.667 11.47 13.09 40.56 5.14
81 82 2.587194 CTCTGGGAGCGCAATCCG 60.587 66.667 11.47 4.86 40.56 4.18
82 83 2.203126 CCTCTGGGAGCGCAATCC 60.203 66.667 11.47 8.98 38.76 3.01
83 84 0.813210 CTTCCTCTGGGAGCGCAATC 60.813 60.000 11.47 0.00 43.29 2.67
84 85 1.222936 CTTCCTCTGGGAGCGCAAT 59.777 57.895 11.47 0.00 43.29 3.56
85 86 1.892819 CTCTTCCTCTGGGAGCGCAA 61.893 60.000 11.47 0.00 43.29 4.85
86 87 2.283894 TCTTCCTCTGGGAGCGCA 60.284 61.111 11.47 0.00 43.29 6.09
87 88 1.038130 TACTCTTCCTCTGGGAGCGC 61.038 60.000 0.00 0.00 43.29 5.92
88 89 1.135333 GTTACTCTTCCTCTGGGAGCG 59.865 57.143 0.00 0.00 43.29 5.03
89 90 2.429250 GAGTTACTCTTCCTCTGGGAGC 59.571 54.545 4.94 0.00 43.29 4.70
90 91 3.028130 GGAGTTACTCTTCCTCTGGGAG 58.972 54.545 12.41 0.00 43.29 4.30
91 92 2.655407 AGGAGTTACTCTTCCTCTGGGA 59.345 50.000 12.41 0.00 40.36 4.37
92 93 3.028130 GAGGAGTTACTCTTCCTCTGGG 58.972 54.545 12.69 0.00 43.89 4.45
93 94 3.699038 CTGAGGAGTTACTCTTCCTCTGG 59.301 52.174 19.41 9.17 46.53 3.86
94 95 4.340617 ACTGAGGAGTTACTCTTCCTCTG 58.659 47.826 19.41 18.55 46.53 3.35
95 96 4.668138 ACTGAGGAGTTACTCTTCCTCT 57.332 45.455 19.41 5.07 46.53 3.69
96 97 4.525100 ACAACTGAGGAGTTACTCTTCCTC 59.475 45.833 19.41 15.06 46.56 3.71
97 98 4.484912 ACAACTGAGGAGTTACTCTTCCT 58.515 43.478 19.41 6.69 40.68 3.36
98 99 4.875561 ACAACTGAGGAGTTACTCTTCC 57.124 45.455 19.41 1.72 40.68 3.46
99 100 6.578163 AGTACAACTGAGGAGTTACTCTTC 57.422 41.667 16.18 16.18 40.68 2.87
100 101 5.181622 CGAGTACAACTGAGGAGTTACTCTT 59.818 44.000 12.41 4.25 41.61 2.85
101 102 4.696402 CGAGTACAACTGAGGAGTTACTCT 59.304 45.833 12.41 0.00 41.61 3.24
102 103 4.142643 CCGAGTACAACTGAGGAGTTACTC 60.143 50.000 3.36 3.36 40.68 2.59
103 104 3.757493 CCGAGTACAACTGAGGAGTTACT 59.243 47.826 0.00 0.00 40.68 2.24
104 105 3.755378 TCCGAGTACAACTGAGGAGTTAC 59.245 47.826 0.00 0.00 40.68 2.50
105 106 3.755378 GTCCGAGTACAACTGAGGAGTTA 59.245 47.826 0.00 0.00 40.68 2.24
106 107 2.557490 GTCCGAGTACAACTGAGGAGTT 59.443 50.000 0.00 0.00 43.63 3.01
107 108 2.161030 GTCCGAGTACAACTGAGGAGT 58.839 52.381 0.00 0.00 33.93 3.85
108 109 2.420722 GAGTCCGAGTACAACTGAGGAG 59.579 54.545 0.00 0.00 33.93 3.69
109 110 2.434428 GAGTCCGAGTACAACTGAGGA 58.566 52.381 0.00 0.00 31.75 3.71
110 111 1.473278 GGAGTCCGAGTACAACTGAGG 59.527 57.143 0.00 0.00 0.00 3.86
111 112 2.160205 TGGAGTCCGAGTACAACTGAG 58.840 52.381 4.30 0.00 0.00 3.35
112 113 2.160205 CTGGAGTCCGAGTACAACTGA 58.840 52.381 4.30 0.00 0.00 3.41
113 114 1.402984 GCTGGAGTCCGAGTACAACTG 60.403 57.143 4.30 0.00 0.00 3.16
114 115 0.889306 GCTGGAGTCCGAGTACAACT 59.111 55.000 4.30 0.00 0.00 3.16
115 116 0.601558 TGCTGGAGTCCGAGTACAAC 59.398 55.000 4.30 0.00 0.00 3.32
116 117 1.334160 TTGCTGGAGTCCGAGTACAA 58.666 50.000 4.30 1.59 0.00 2.41
117 118 1.334160 TTTGCTGGAGTCCGAGTACA 58.666 50.000 4.30 0.00 0.00 2.90
118 119 2.450609 TTTTGCTGGAGTCCGAGTAC 57.549 50.000 4.30 0.00 0.00 2.73
119 120 3.695830 ATTTTTGCTGGAGTCCGAGTA 57.304 42.857 4.30 0.06 0.00 2.59
120 121 2.568623 ATTTTTGCTGGAGTCCGAGT 57.431 45.000 4.30 0.00 0.00 4.18
121 122 3.861840 TCTATTTTTGCTGGAGTCCGAG 58.138 45.455 4.30 4.55 0.00 4.63
122 123 3.973206 TCTATTTTTGCTGGAGTCCGA 57.027 42.857 4.30 0.00 0.00 4.55
123 124 4.035675 GGAATCTATTTTTGCTGGAGTCCG 59.964 45.833 4.30 0.44 32.86 4.79
124 125 4.949856 TGGAATCTATTTTTGCTGGAGTCC 59.050 41.667 0.73 0.73 40.28 3.85
125 126 5.882557 TCTGGAATCTATTTTTGCTGGAGTC 59.117 40.000 0.00 0.00 0.00 3.36
126 127 5.819991 TCTGGAATCTATTTTTGCTGGAGT 58.180 37.500 0.00 0.00 0.00 3.85
127 128 6.956202 ATCTGGAATCTATTTTTGCTGGAG 57.044 37.500 0.00 0.00 0.00 3.86
128 129 6.322201 GGAATCTGGAATCTATTTTTGCTGGA 59.678 38.462 0.00 0.00 0.00 3.86
129 130 6.462067 GGGAATCTGGAATCTATTTTTGCTGG 60.462 42.308 0.00 0.00 0.00 4.85
130 131 6.462067 GGGGAATCTGGAATCTATTTTTGCTG 60.462 42.308 0.00 0.00 0.00 4.41
131 132 5.600069 GGGGAATCTGGAATCTATTTTTGCT 59.400 40.000 0.00 0.00 0.00 3.91
132 133 5.600069 AGGGGAATCTGGAATCTATTTTTGC 59.400 40.000 0.00 0.00 0.00 3.68
133 134 8.946797 ATAGGGGAATCTGGAATCTATTTTTG 57.053 34.615 0.00 0.00 0.00 2.44
134 135 8.736675 TGATAGGGGAATCTGGAATCTATTTTT 58.263 33.333 0.00 0.00 0.00 1.94
135 136 8.293027 TGATAGGGGAATCTGGAATCTATTTT 57.707 34.615 0.00 0.00 0.00 1.82
136 137 7.895144 TGATAGGGGAATCTGGAATCTATTT 57.105 36.000 0.00 0.00 0.00 1.40
137 138 9.580103 TTATGATAGGGGAATCTGGAATCTATT 57.420 33.333 0.00 0.00 0.00 1.73
138 139 9.755890 ATTATGATAGGGGAATCTGGAATCTAT 57.244 33.333 0.00 0.00 0.00 1.98
139 140 9.580103 AATTATGATAGGGGAATCTGGAATCTA 57.420 33.333 0.00 0.00 0.00 1.98
140 141 8.474062 AATTATGATAGGGGAATCTGGAATCT 57.526 34.615 0.00 0.00 0.00 2.40
141 142 7.497249 CGAATTATGATAGGGGAATCTGGAATC 59.503 40.741 0.00 0.00 0.00 2.52
142 143 7.341805 CGAATTATGATAGGGGAATCTGGAAT 58.658 38.462 0.00 0.00 0.00 3.01
143 144 6.296432 CCGAATTATGATAGGGGAATCTGGAA 60.296 42.308 0.00 0.00 0.00 3.53
144 145 5.189736 CCGAATTATGATAGGGGAATCTGGA 59.810 44.000 0.00 0.00 0.00 3.86
145 146 5.189736 TCCGAATTATGATAGGGGAATCTGG 59.810 44.000 0.00 0.00 0.00 3.86
146 147 6.070538 AGTCCGAATTATGATAGGGGAATCTG 60.071 42.308 0.00 0.00 0.00 2.90
147 148 6.026186 AGTCCGAATTATGATAGGGGAATCT 58.974 40.000 0.00 0.00 0.00 2.40
148 149 6.301169 AGTCCGAATTATGATAGGGGAATC 57.699 41.667 0.00 0.00 0.00 2.52
149 150 7.808279 TTAGTCCGAATTATGATAGGGGAAT 57.192 36.000 0.00 0.00 0.00 3.01
150 151 7.621006 TTTAGTCCGAATTATGATAGGGGAA 57.379 36.000 0.00 0.00 0.00 3.97
151 152 7.678598 AGATTTAGTCCGAATTATGATAGGGGA 59.321 37.037 0.00 0.00 0.00 4.81
152 153 7.852263 AGATTTAGTCCGAATTATGATAGGGG 58.148 38.462 0.00 0.00 0.00 4.79
153 154 8.754080 AGAGATTTAGTCCGAATTATGATAGGG 58.246 37.037 0.00 0.00 0.00 3.53
154 155 9.579768 CAGAGATTTAGTCCGAATTATGATAGG 57.420 37.037 0.00 0.00 0.00 2.57
157 158 8.091449 GGTCAGAGATTTAGTCCGAATTATGAT 58.909 37.037 0.00 0.00 0.00 2.45
158 159 7.434492 GGTCAGAGATTTAGTCCGAATTATGA 58.566 38.462 0.00 0.00 0.00 2.15
159 160 6.647067 GGGTCAGAGATTTAGTCCGAATTATG 59.353 42.308 0.00 0.00 0.00 1.90
160 161 6.326583 TGGGTCAGAGATTTAGTCCGAATTAT 59.673 38.462 0.00 0.00 0.00 1.28
161 162 5.659525 TGGGTCAGAGATTTAGTCCGAATTA 59.340 40.000 0.00 0.00 0.00 1.40
162 163 4.469945 TGGGTCAGAGATTTAGTCCGAATT 59.530 41.667 0.00 0.00 0.00 2.17
163 164 4.030913 TGGGTCAGAGATTTAGTCCGAAT 58.969 43.478 0.00 0.00 0.00 3.34
164 165 3.437213 TGGGTCAGAGATTTAGTCCGAA 58.563 45.455 0.00 0.00 0.00 4.30
165 166 3.095912 TGGGTCAGAGATTTAGTCCGA 57.904 47.619 0.00 0.00 0.00 4.55
166 167 3.243907 GGATGGGTCAGAGATTTAGTCCG 60.244 52.174 0.00 0.00 0.00 4.79
167 168 3.071747 GGGATGGGTCAGAGATTTAGTCC 59.928 52.174 0.00 0.00 0.00 3.85
168 169 3.243907 CGGGATGGGTCAGAGATTTAGTC 60.244 52.174 0.00 0.00 0.00 2.59
169 170 2.700897 CGGGATGGGTCAGAGATTTAGT 59.299 50.000 0.00 0.00 0.00 2.24
170 171 2.965831 TCGGGATGGGTCAGAGATTTAG 59.034 50.000 0.00 0.00 0.00 1.85
171 172 3.040655 TCGGGATGGGTCAGAGATTTA 57.959 47.619 0.00 0.00 0.00 1.40
172 173 1.879575 TCGGGATGGGTCAGAGATTT 58.120 50.000 0.00 0.00 0.00 2.17
173 174 1.696336 CATCGGGATGGGTCAGAGATT 59.304 52.381 0.62 0.00 35.24 2.40
174 175 1.133041 TCATCGGGATGGGTCAGAGAT 60.133 52.381 8.68 0.00 39.24 2.75
175 176 0.261696 TCATCGGGATGGGTCAGAGA 59.738 55.000 8.68 0.00 39.24 3.10
176 177 0.678395 CTCATCGGGATGGGTCAGAG 59.322 60.000 8.68 0.00 39.24 3.35
177 178 0.760567 CCTCATCGGGATGGGTCAGA 60.761 60.000 7.70 0.00 37.60 3.27
178 179 0.760567 TCCTCATCGGGATGGGTCAG 60.761 60.000 7.70 0.00 37.60 3.51
179 180 0.104986 ATCCTCATCGGGATGGGTCA 60.105 55.000 7.70 0.00 43.70 4.02
180 181 1.002544 GAATCCTCATCGGGATGGGTC 59.997 57.143 7.70 0.00 44.50 4.46
181 182 1.059913 GAATCCTCATCGGGATGGGT 58.940 55.000 7.70 0.00 44.50 4.51
182 183 0.036952 CGAATCCTCATCGGGATGGG 60.037 60.000 8.68 5.22 44.50 4.00
183 184 3.521995 CGAATCCTCATCGGGATGG 57.478 57.895 8.68 0.52 44.50 3.51
189 190 2.225491 GAGAGAGTCCGAATCCTCATCG 59.775 54.545 8.54 0.00 39.92 3.84
190 191 2.225491 CGAGAGAGTCCGAATCCTCATC 59.775 54.545 12.03 0.00 0.00 2.92
191 192 2.226330 CGAGAGAGTCCGAATCCTCAT 58.774 52.381 12.03 0.00 0.00 2.90
192 193 1.669604 CGAGAGAGTCCGAATCCTCA 58.330 55.000 12.03 0.00 0.00 3.86
193 194 0.948678 CCGAGAGAGTCCGAATCCTC 59.051 60.000 0.00 0.00 0.00 3.71
194 195 0.547075 TCCGAGAGAGTCCGAATCCT 59.453 55.000 0.00 0.00 0.00 3.24
195 196 0.948678 CTCCGAGAGAGTCCGAATCC 59.051 60.000 0.00 0.00 37.87 3.01
196 197 0.309612 GCTCCGAGAGAGTCCGAATC 59.690 60.000 0.00 0.00 45.21 2.52
197 198 1.104577 GGCTCCGAGAGAGTCCGAAT 61.105 60.000 0.00 0.00 41.74 3.34
198 199 1.749638 GGCTCCGAGAGAGTCCGAA 60.750 63.158 0.00 0.00 41.74 4.30
199 200 2.124653 GGCTCCGAGAGAGTCCGA 60.125 66.667 0.00 0.00 41.74 4.55
200 201 3.578272 CGGCTCCGAGAGAGTCCG 61.578 72.222 1.35 9.85 44.99 4.79
201 202 3.894947 GCGGCTCCGAGAGAGTCC 61.895 72.222 13.11 0.00 44.99 3.85
202 203 3.894947 GGCGGCTCCGAGAGAGTC 61.895 72.222 13.11 0.00 45.21 3.36
217 218 3.493830 TACGTGGATGATCGCGGGC 62.494 63.158 6.13 0.00 43.93 6.13
218 219 1.371758 CTACGTGGATGATCGCGGG 60.372 63.158 6.13 0.00 43.93 6.13
219 220 0.660595 GACTACGTGGATGATCGCGG 60.661 60.000 6.13 0.00 43.93 6.46
220 221 0.028902 TGACTACGTGGATGATCGCG 59.971 55.000 5.70 0.00 44.99 5.87
221 222 1.478137 GTGACTACGTGGATGATCGC 58.522 55.000 5.70 0.00 0.00 4.58
222 223 1.743182 CGTGACTACGTGGATGATCG 58.257 55.000 5.70 0.00 44.99 3.69
233 234 1.260033 CCTCGATCCGTACGTGACTAC 59.740 57.143 15.21 6.08 0.00 2.73
234 235 1.575244 CCTCGATCCGTACGTGACTA 58.425 55.000 15.21 0.00 0.00 2.59
235 236 1.712977 GCCTCGATCCGTACGTGACT 61.713 60.000 15.21 2.21 0.00 3.41
236 237 1.298190 GCCTCGATCCGTACGTGAC 60.298 63.158 15.21 3.78 0.00 3.67
237 238 2.475466 GGCCTCGATCCGTACGTGA 61.475 63.158 15.21 11.46 0.00 4.35
238 239 1.162181 TAGGCCTCGATCCGTACGTG 61.162 60.000 9.68 5.96 0.00 4.49
239 240 1.146930 TAGGCCTCGATCCGTACGT 59.853 57.895 9.68 0.00 0.00 3.57
240 241 1.573436 GTAGGCCTCGATCCGTACG 59.427 63.158 9.68 8.69 0.00 3.67
241 242 1.573436 CGTAGGCCTCGATCCGTAC 59.427 63.158 9.68 0.00 0.00 3.67
242 243 1.598962 CCGTAGGCCTCGATCCGTA 60.599 63.158 21.43 0.00 46.14 4.02
243 244 2.905880 CCGTAGGCCTCGATCCGT 60.906 66.667 21.43 0.00 46.14 4.69
255 256 0.864377 CGTACGTGCATGACCCGTAG 60.864 60.000 14.17 1.57 37.70 3.51
256 257 1.137194 CGTACGTGCATGACCCGTA 59.863 57.895 14.17 7.72 36.12 4.02
257 258 2.126228 CGTACGTGCATGACCCGT 60.126 61.111 14.17 8.85 38.53 5.28
258 259 3.550992 GCGTACGTGCATGACCCG 61.551 66.667 17.90 11.99 34.15 5.28
259 260 2.433491 TGCGTACGTGCATGACCC 60.433 61.111 17.90 0.00 40.62 4.46
294 295 0.755327 AAAGGGTGGTGCACAAGGAC 60.755 55.000 20.43 8.95 35.86 3.85
297 298 1.402787 AGAAAAGGGTGGTGCACAAG 58.597 50.000 20.43 0.00 35.86 3.16
298 299 1.859302 AAGAAAAGGGTGGTGCACAA 58.141 45.000 20.43 3.78 35.86 3.33
299 300 1.859302 AAAGAAAAGGGTGGTGCACA 58.141 45.000 20.43 1.62 35.86 4.57
308 309 2.579410 TCCGGGAGAAAAGAAAAGGG 57.421 50.000 0.00 0.00 0.00 3.95
309 310 4.929819 TTTTCCGGGAGAAAAGAAAAGG 57.070 40.909 0.00 0.00 47.00 3.11
322 323 2.028876 ACAAGTGGTTTCTTTTCCGGG 58.971 47.619 0.00 0.00 0.00 5.73
325 326 3.691498 CGACACAAGTGGTTTCTTTTCC 58.309 45.455 5.08 0.00 34.19 3.13
327 328 2.490115 TGCGACACAAGTGGTTTCTTTT 59.510 40.909 5.08 0.00 34.19 2.27
335 336 2.587753 ACGGTGCGACACAAGTGG 60.588 61.111 11.20 0.00 35.86 4.00
379 380 1.066929 TCTCATGGTGTCCATCGTGTG 60.067 52.381 0.00 0.00 43.15 3.82
387 388 2.704572 CAGTCCTTTCTCATGGTGTCC 58.295 52.381 0.00 0.00 0.00 4.02
391 392 1.980765 TCAGCAGTCCTTTCTCATGGT 59.019 47.619 0.00 0.00 0.00 3.55
402 403 1.172812 GGTGGGTGTTTCAGCAGTCC 61.173 60.000 1.62 0.00 33.07 3.85
405 406 0.540365 ATGGGTGGGTGTTTCAGCAG 60.540 55.000 1.62 0.00 34.64 4.24
415 416 4.365111 ATGCGTGCATGGGTGGGT 62.365 61.111 6.53 0.00 35.03 4.51
438 439 1.226030 AAACGCAGAACCTACCACGC 61.226 55.000 0.00 0.00 0.00 5.34
441 442 2.215196 GTTCAAACGCAGAACCTACCA 58.785 47.619 4.43 0.00 39.48 3.25
442 443 1.193874 CGTTCAAACGCAGAACCTACC 59.806 52.381 1.95 0.00 46.06 3.18
443 444 2.572173 CGTTCAAACGCAGAACCTAC 57.428 50.000 1.95 0.00 46.06 3.18
459 460 6.546428 TTCTTCTAATCCTTCTCATCCGTT 57.454 37.500 0.00 0.00 0.00 4.44
465 466 4.223700 TGCAGCTTCTTCTAATCCTTCTCA 59.776 41.667 0.00 0.00 0.00 3.27
472 473 1.596727 CCGCTGCAGCTTCTTCTAATC 59.403 52.381 34.22 3.31 39.32 1.75
475 479 0.174389 CTCCGCTGCAGCTTCTTCTA 59.826 55.000 34.22 11.78 39.32 2.10
488 492 6.415573 AGGTTAAATAATTGTCTTCTCCGCT 58.584 36.000 0.00 0.00 0.00 5.52
489 493 6.679327 AGGTTAAATAATTGTCTTCTCCGC 57.321 37.500 0.00 0.00 0.00 5.54
516 526 6.145534 CGTGTGCTTCTCACTTAGTTAAATCA 59.854 38.462 0.00 0.00 45.81 2.57
534 544 4.498520 CTCGCCGATCCGTGTGCT 62.499 66.667 0.00 0.00 0.00 4.40
553 572 2.182030 CTCACCGGAGAGTTCGCC 59.818 66.667 19.66 0.00 44.26 5.54
556 575 2.507324 GCGCTCACCGGAGAGTTC 60.507 66.667 26.72 16.23 44.26 3.01
559 578 3.506096 TACGCGCTCACCGGAGAG 61.506 66.667 23.06 23.06 44.26 3.20
567 586 2.094390 AGATTGTAAAGGTACGCGCTCA 60.094 45.455 5.73 0.00 32.40 4.26
568 587 2.281762 CAGATTGTAAAGGTACGCGCTC 59.718 50.000 5.73 0.00 32.40 5.03
569 588 2.268298 CAGATTGTAAAGGTACGCGCT 58.732 47.619 5.73 0.00 32.40 5.92
570 589 1.997606 ACAGATTGTAAAGGTACGCGC 59.002 47.619 5.73 0.00 32.40 6.86
571 590 3.247442 TGACAGATTGTAAAGGTACGCG 58.753 45.455 3.53 3.53 32.40 6.01
572 591 4.868171 TCATGACAGATTGTAAAGGTACGC 59.132 41.667 0.00 0.00 32.40 4.42
573 592 6.455646 GCTTCATGACAGATTGTAAAGGTACG 60.456 42.308 0.00 0.00 32.40 3.67
574 593 6.371548 TGCTTCATGACAGATTGTAAAGGTAC 59.628 38.462 0.00 0.00 0.00 3.34
575 594 6.371548 GTGCTTCATGACAGATTGTAAAGGTA 59.628 38.462 0.00 0.00 0.00 3.08
576 595 5.182001 GTGCTTCATGACAGATTGTAAAGGT 59.818 40.000 0.00 0.00 0.00 3.50
577 596 5.634896 GTGCTTCATGACAGATTGTAAAGG 58.365 41.667 0.00 0.00 0.00 3.11
590 609 2.416747 CAGTTTCCTCGTGCTTCATGA 58.583 47.619 0.00 0.00 0.00 3.07
597 618 0.884704 TCTTGGCAGTTTCCTCGTGC 60.885 55.000 0.00 0.00 36.42 5.34
601 622 4.363138 CTTTTGTTCTTGGCAGTTTCCTC 58.637 43.478 0.00 0.00 0.00 3.71
625 646 2.459934 GAAACCAAACCAAAGCGAGTG 58.540 47.619 0.00 0.00 0.00 3.51
627 648 1.681264 AGGAAACCAAACCAAAGCGAG 59.319 47.619 0.00 0.00 0.00 5.03
628 649 1.770294 AGGAAACCAAACCAAAGCGA 58.230 45.000 0.00 0.00 0.00 4.93
629 650 2.469826 GAAGGAAACCAAACCAAAGCG 58.530 47.619 0.00 0.00 0.00 4.68
630 651 2.469826 CGAAGGAAACCAAACCAAAGC 58.530 47.619 0.00 0.00 0.00 3.51
662 683 2.803030 AGCTGAGCTGATGATGGTTT 57.197 45.000 5.97 0.00 37.57 3.27
674 700 1.205893 ACTAAGTGGTAGCAGCTGAGC 59.794 52.381 20.43 7.88 32.45 4.26
675 701 3.601443 AACTAAGTGGTAGCAGCTGAG 57.399 47.619 20.43 4.69 32.45 3.35
693 723 7.551617 TCCCGAGTTTCCAATATCTCTTTTAAC 59.448 37.037 0.00 0.00 0.00 2.01
706 736 0.682852 ACACGATCCCGAGTTTCCAA 59.317 50.000 0.00 0.00 36.21 3.53
725 755 2.771943 CCCAAGGTGTAGATTGGCTCTA 59.228 50.000 0.00 0.00 43.86 2.43
756 787 3.501445 AGTATTCCGACTATAGGCGTCAC 59.499 47.826 25.76 16.48 0.00 3.67
758 789 4.762956 AAGTATTCCGACTATAGGCGTC 57.237 45.455 25.76 10.85 0.00 5.19
759 790 4.826183 AGAAAGTATTCCGACTATAGGCGT 59.174 41.667 25.76 10.87 36.12 5.68
760 791 5.373981 AGAAAGTATTCCGACTATAGGCG 57.626 43.478 21.52 21.52 36.12 5.52
762 793 6.896021 TGGAGAAAGTATTCCGACTATAGG 57.104 41.667 4.43 0.00 36.12 2.57
764 795 7.893658 GGAATGGAGAAAGTATTCCGACTATA 58.106 38.462 0.00 0.00 40.12 1.31
765 796 6.760291 GGAATGGAGAAAGTATTCCGACTAT 58.240 40.000 0.00 0.00 40.12 2.12
766 797 6.158023 GGAATGGAGAAAGTATTCCGACTA 57.842 41.667 0.00 0.00 40.12 2.59
788 819 2.077687 AAGCTAGCAATGGGGAATGG 57.922 50.000 18.83 0.00 0.00 3.16
811 842 4.588528 TGGAAAACAAAGCTAAAGAGGCAT 59.411 37.500 0.00 0.00 0.00 4.40
815 846 5.278512 GGGAGTGGAAAACAAAGCTAAAGAG 60.279 44.000 0.00 0.00 0.00 2.85
824 855 4.141824 GGAATGTTGGGAGTGGAAAACAAA 60.142 41.667 0.00 0.00 36.23 2.83
828 859 2.091055 TGGGAATGTTGGGAGTGGAAAA 60.091 45.455 0.00 0.00 0.00 2.29
890 922 6.897413 ACTTGGGAAATAAGCATATGAAAGGT 59.103 34.615 6.97 0.00 0.00 3.50
933 973 4.520492 CACAATCAACCTTTTCTAGTGCCT 59.480 41.667 0.00 0.00 0.00 4.75
936 976 6.618287 TGTCACAATCAACCTTTTCTAGTG 57.382 37.500 0.00 0.00 0.00 2.74
937 977 6.998074 TCATGTCACAATCAACCTTTTCTAGT 59.002 34.615 0.00 0.00 0.00 2.57
938 978 7.439157 TCATGTCACAATCAACCTTTTCTAG 57.561 36.000 0.00 0.00 0.00 2.43
939 979 6.072508 GCTCATGTCACAATCAACCTTTTCTA 60.073 38.462 0.00 0.00 0.00 2.10
940 980 5.278660 GCTCATGTCACAATCAACCTTTTCT 60.279 40.000 0.00 0.00 0.00 2.52
941 981 4.919754 GCTCATGTCACAATCAACCTTTTC 59.080 41.667 0.00 0.00 0.00 2.29
947 991 4.863491 ACTTTGCTCATGTCACAATCAAC 58.137 39.130 0.00 0.00 0.00 3.18
976 1022 0.883833 GAACTGGGCATCCAAGTGTG 59.116 55.000 0.00 0.00 43.51 3.82
977 1023 0.251341 GGAACTGGGCATCCAAGTGT 60.251 55.000 0.00 0.00 43.51 3.55
1009 1063 1.008327 TCTCCTGATGCTCCAAGGGTA 59.992 52.381 0.00 0.00 0.00 3.69
1011 1065 0.914644 TTCTCCTGATGCTCCAAGGG 59.085 55.000 0.00 0.00 0.00 3.95
1021 1075 1.213926 GTTCATGGGCCTTCTCCTGAT 59.786 52.381 4.53 0.00 0.00 2.90
1041 1095 6.825721 ACTAAGATGAGGCAAGATGTTTTAGG 59.174 38.462 0.00 0.00 0.00 2.69
1044 1098 6.240894 TCACTAAGATGAGGCAAGATGTTTT 58.759 36.000 0.00 0.00 0.00 2.43
1063 1117 3.739209 CGCTTGGCATGAGAAGATCACTA 60.739 47.826 4.32 0.00 41.91 2.74
1068 1122 2.401967 GCGCTTGGCATGAGAAGAT 58.598 52.632 0.00 0.00 42.87 2.40
1086 1140 0.327924 TAGGGAATGTGGTGGCACAG 59.672 55.000 20.82 0.00 41.80 3.66
1089 1143 1.072266 AAGTAGGGAATGTGGTGGCA 58.928 50.000 0.00 0.00 0.00 4.92
1092 1146 4.881850 GGATAACAAGTAGGGAATGTGGTG 59.118 45.833 0.00 0.00 0.00 4.17
1099 1153 3.850173 AGCCAAGGATAACAAGTAGGGAA 59.150 43.478 0.00 0.00 0.00 3.97
1100 1154 3.199946 CAGCCAAGGATAACAAGTAGGGA 59.800 47.826 0.00 0.00 0.00 4.20
1112 1167 0.039035 TTAAACCGCCAGCCAAGGAT 59.961 50.000 0.00 0.00 0.00 3.24
1125 1180 4.906618 TGATCTTCAGAGGTGGTTAAACC 58.093 43.478 0.00 0.00 40.85 3.27
1130 1185 4.982241 TCTTTGATCTTCAGAGGTGGTT 57.018 40.909 0.00 0.00 30.36 3.67
1131 1186 4.533707 TCATCTTTGATCTTCAGAGGTGGT 59.466 41.667 8.05 0.00 39.42 4.16
1140 1195 5.055812 AGGCGATCTTCATCTTTGATCTTC 58.944 41.667 0.00 0.00 35.68 2.87
1142 1197 4.686191 AGGCGATCTTCATCTTTGATCT 57.314 40.909 0.00 0.00 35.68 2.75
1143 1198 5.107143 GCTTAGGCGATCTTCATCTTTGATC 60.107 44.000 0.00 0.00 34.81 2.92
1147 1202 4.142609 TGCTTAGGCGATCTTCATCTTT 57.857 40.909 0.00 0.00 42.25 2.52
1159 1214 2.125512 AGCTCCGTTGCTTAGGCG 60.126 61.111 0.00 0.00 40.93 5.52
1161 1216 0.460987 CAGGAGCTCCGTTGCTTAGG 60.461 60.000 26.95 5.69 44.17 2.69
1163 1218 0.973632 TTCAGGAGCTCCGTTGCTTA 59.026 50.000 26.95 6.86 44.17 3.09
1167 1222 1.743252 GCCTTCAGGAGCTCCGTTG 60.743 63.158 26.95 20.29 42.08 4.10
1168 1223 1.915769 AGCCTTCAGGAGCTCCGTT 60.916 57.895 26.95 8.04 42.08 4.44
1184 1239 0.441533 CTCTTGCACATCGTGACAGC 59.558 55.000 0.00 0.00 35.23 4.40
1185 1240 0.441533 GCTCTTGCACATCGTGACAG 59.558 55.000 0.00 0.00 39.41 3.51
1186 1241 0.249826 TGCTCTTGCACATCGTGACA 60.250 50.000 0.00 0.00 45.31 3.58
1203 1261 2.413142 GCCAGGATGCTGGTCTTGC 61.413 63.158 31.17 14.95 45.87 4.01
1222 1280 2.621517 CTTGGATGAGGAGCCTGGCC 62.622 65.000 16.57 6.85 0.00 5.36
1255 1313 3.125607 CCGATGGTGGCGCTACTA 58.874 61.111 23.68 18.78 0.00 1.82
1268 1326 4.162690 GTGGGAGAAGGCGCCGAT 62.163 66.667 23.20 15.02 34.38 4.18
1294 1352 1.593750 GGCGGCAGCTGAGAGTATG 60.594 63.158 20.43 0.00 44.37 2.39
1295 1353 2.818132 GGCGGCAGCTGAGAGTAT 59.182 61.111 20.43 0.00 44.37 2.12
1312 1370 2.881352 GCGCTCTTCTTCCGGTCG 60.881 66.667 0.00 0.00 0.00 4.79
1319 1377 0.543277 TCCATCATGGCGCTCTTCTT 59.457 50.000 7.64 0.00 37.47 2.52
1324 1382 0.590195 GACATTCCATCATGGCGCTC 59.410 55.000 7.64 0.00 37.47 5.03
1325 1383 0.107066 TGACATTCCATCATGGCGCT 60.107 50.000 7.64 0.00 37.47 5.92
1327 1385 1.381522 TGTGACATTCCATCATGGCG 58.618 50.000 0.00 0.00 37.47 5.69
1370 1428 2.354109 TGCATCACGAGTGTCTTCTC 57.646 50.000 2.97 0.00 0.00 2.87
1378 1436 3.752747 TGATCAAACAATGCATCACGAGT 59.247 39.130 0.00 0.00 0.00 4.18
1380 1438 4.455190 TCTTGATCAAACAATGCATCACGA 59.545 37.500 9.88 0.00 30.45 4.35
1381 1439 4.725359 TCTTGATCAAACAATGCATCACG 58.275 39.130 9.88 0.00 30.45 4.35
1383 1441 6.578163 TTCTCTTGATCAAACAATGCATCA 57.422 33.333 9.88 0.00 0.00 3.07
1390 1488 6.716173 TCACCATCATTCTCTTGATCAAACAA 59.284 34.615 9.88 2.96 34.09 2.83
1440 1538 2.700773 GCCGTTGAAGATGGGGTGC 61.701 63.158 0.00 0.00 34.76 5.01
1457 1555 2.774439 ACAAAAGTTGGTGTCATCGC 57.226 45.000 0.00 0.00 34.12 4.58
1466 1564 2.608546 TCGTCGGTGTAACAAAAGTTGG 59.391 45.455 0.00 0.00 39.98 3.77
1472 1570 2.582728 ACACTCGTCGGTGTAACAAA 57.417 45.000 15.10 0.00 46.89 2.83
1491 1589 1.899142 TCGACCTCACCATCAACATCA 59.101 47.619 0.00 0.00 0.00 3.07
1494 1592 1.001974 CCTTCGACCTCACCATCAACA 59.998 52.381 0.00 0.00 0.00 3.33
1498 1596 3.132289 TCATTACCTTCGACCTCACCATC 59.868 47.826 0.00 0.00 0.00 3.51
1499 1597 3.104512 TCATTACCTTCGACCTCACCAT 58.895 45.455 0.00 0.00 0.00 3.55
1500 1598 2.531771 TCATTACCTTCGACCTCACCA 58.468 47.619 0.00 0.00 0.00 4.17
1501 1599 3.194968 TCTTCATTACCTTCGACCTCACC 59.805 47.826 0.00 0.00 0.00 4.02
1502 1600 4.451629 TCTTCATTACCTTCGACCTCAC 57.548 45.455 0.00 0.00 0.00 3.51
1503 1601 4.709886 TCATCTTCATTACCTTCGACCTCA 59.290 41.667 0.00 0.00 0.00 3.86
1504 1602 5.263968 TCATCTTCATTACCTTCGACCTC 57.736 43.478 0.00 0.00 0.00 3.85
1505 1603 5.363868 TCATCATCTTCATTACCTTCGACCT 59.636 40.000 0.00 0.00 0.00 3.85
1506 1604 5.463724 GTCATCATCTTCATTACCTTCGACC 59.536 44.000 0.00 0.00 0.00 4.79
1507 1605 5.174035 CGTCATCATCTTCATTACCTTCGAC 59.826 44.000 0.00 0.00 0.00 4.20
1508 1606 5.067283 TCGTCATCATCTTCATTACCTTCGA 59.933 40.000 0.00 0.00 0.00 3.71
1509 1607 5.281727 TCGTCATCATCTTCATTACCTTCG 58.718 41.667 0.00 0.00 0.00 3.79
1512 1610 5.987953 CACATCGTCATCATCTTCATTACCT 59.012 40.000 0.00 0.00 0.00 3.08
1515 1613 5.604565 AGCACATCGTCATCATCTTCATTA 58.395 37.500 0.00 0.00 0.00 1.90
1529 1627 1.472878 ACACATCGAGTAGCACATCGT 59.527 47.619 0.00 0.00 39.86 3.73
1547 1645 2.124122 CGTTGTCGTCTTCATCACACA 58.876 47.619 0.00 0.00 0.00 3.72
1562 1660 0.601841 GACCGGTGGTTCATCGTTGT 60.602 55.000 14.63 0.00 36.10 3.32
1564 1662 0.323629 ATGACCGGTGGTTCATCGTT 59.676 50.000 14.63 0.00 36.10 3.85
1569 1667 0.035534 CATCCATGACCGGTGGTTCA 60.036 55.000 14.63 3.25 35.25 3.18
1570 1668 0.035439 ACATCCATGACCGGTGGTTC 60.035 55.000 14.63 0.00 35.25 3.62
1593 1691 0.895530 CAGCCTCTCGGTTGTTCCTA 59.104 55.000 0.00 0.00 36.82 2.94
1594 1692 0.832135 TCAGCCTCTCGGTTGTTCCT 60.832 55.000 0.00 0.00 41.76 3.36
1628 1726 4.498850 CCTGATCGATCTCGTTCTCAATGT 60.499 45.833 25.02 0.00 38.49 2.71
1635 1733 0.661780 CCGCCTGATCGATCTCGTTC 60.662 60.000 25.02 9.59 40.80 3.95
1653 1751 3.006967 ACCTAGTGATGAACATATCGGCC 59.993 47.826 0.00 0.00 0.00 6.13
1656 1754 5.402568 CCGAAACCTAGTGATGAACATATCG 59.597 44.000 0.00 0.00 0.00 2.92
1671 1769 1.187974 TCATCCGCTTCCGAAACCTA 58.812 50.000 0.00 0.00 36.29 3.08
1709 1807 3.563808 GCAGGTAGACATTGACACACAAA 59.436 43.478 0.00 0.00 42.03 2.83
1715 1813 2.224499 TGCAAGCAGGTAGACATTGACA 60.224 45.455 0.00 0.00 0.00 3.58
1717 1815 2.857186 TGCAAGCAGGTAGACATTGA 57.143 45.000 0.00 0.00 0.00 2.57
1718 1816 2.098607 CCATGCAAGCAGGTAGACATTG 59.901 50.000 5.95 0.00 0.00 2.82
1719 1817 2.372264 CCATGCAAGCAGGTAGACATT 58.628 47.619 5.95 0.00 0.00 2.71
1722 1820 1.379642 GGCCATGCAAGCAGGTAGAC 61.380 60.000 13.44 0.00 0.00 2.59
1727 1825 2.577059 CTTGGCCATGCAAGCAGG 59.423 61.111 6.09 0.00 0.00 4.85
1745 1843 2.101582 AGCAGTCCGTATAAGCTTCAGG 59.898 50.000 0.00 2.45 29.98 3.86
1753 1851 7.275183 TGTAACTCTACTAGCAGTCCGTATAA 58.725 38.462 0.00 0.00 0.00 0.98
1756 1854 5.089970 TGTAACTCTACTAGCAGTCCGTA 57.910 43.478 0.00 0.00 0.00 4.02
1757 1855 3.947868 TGTAACTCTACTAGCAGTCCGT 58.052 45.455 0.00 0.00 0.00 4.69
1758 1856 4.959596 TTGTAACTCTACTAGCAGTCCG 57.040 45.455 0.00 0.00 0.00 4.79
1759 1857 7.804843 TCTATTGTAACTCTACTAGCAGTCC 57.195 40.000 0.00 0.00 0.00 3.85
1760 1858 9.058174 TCATCTATTGTAACTCTACTAGCAGTC 57.942 37.037 0.00 0.00 0.00 3.51
1768 1878 7.653713 CACACCCATCATCTATTGTAACTCTAC 59.346 40.741 0.00 0.00 0.00 2.59
1774 1884 6.384015 AGTCTCACACCCATCATCTATTGTAA 59.616 38.462 0.00 0.00 0.00 2.41
1778 1888 4.964897 TCAGTCTCACACCCATCATCTATT 59.035 41.667 0.00 0.00 0.00 1.73
1779 1889 4.550669 TCAGTCTCACACCCATCATCTAT 58.449 43.478 0.00 0.00 0.00 1.98
1786 1897 3.445008 AGTGTATCAGTCTCACACCCAT 58.555 45.455 0.00 0.00 42.81 4.00
1797 1908 6.793482 TCTCCCTACCTAGATAGTGTATCAGT 59.207 42.308 0.00 0.00 37.65 3.41
1798 1909 7.260387 TCTCCCTACCTAGATAGTGTATCAG 57.740 44.000 0.00 0.00 37.65 2.90
1799 1910 7.643612 TTCTCCCTACCTAGATAGTGTATCA 57.356 40.000 0.00 0.00 37.65 2.15
1805 1922 7.420029 TGTTCTTTTCTCCCTACCTAGATAGT 58.580 38.462 0.00 0.00 0.00 2.12
1806 1923 7.899648 TGTTCTTTTCTCCCTACCTAGATAG 57.100 40.000 0.00 0.00 0.00 2.08
1810 1927 5.425539 TCCATGTTCTTTTCTCCCTACCTAG 59.574 44.000 0.00 0.00 0.00 3.02
1829 1946 1.334556 CACGGCCAACATATGTCCATG 59.665 52.381 9.23 3.88 0.00 3.66
1844 1961 5.593010 AGAATTATTCTACTCTCACACGGC 58.407 41.667 5.56 0.00 38.49 5.68
1870 1987 3.343941 ACTCATTTGTAGGCGCCTAAA 57.656 42.857 36.82 30.15 0.00 1.85
1872 1989 3.343941 AAACTCATTTGTAGGCGCCTA 57.656 42.857 32.24 32.24 0.00 3.93
1873 1990 2.200373 AAACTCATTTGTAGGCGCCT 57.800 45.000 34.85 34.85 0.00 5.52
1874 1991 2.488153 AGAAAACTCATTTGTAGGCGCC 59.512 45.455 21.89 21.89 0.00 6.53
1875 1992 3.831715 AGAAAACTCATTTGTAGGCGC 57.168 42.857 0.00 0.00 0.00 6.53
1877 1994 5.010617 TCCCAAAGAAAACTCATTTGTAGGC 59.989 40.000 0.00 0.00 33.13 3.93
1879 1996 7.510549 TCTCCCAAAGAAAACTCATTTGTAG 57.489 36.000 0.00 0.00 33.13 2.74
1880 1997 7.889873 TTCTCCCAAAGAAAACTCATTTGTA 57.110 32.000 0.00 0.00 41.10 2.41
1908 2025 4.746611 AGTACTGTTTTACTACCACGTTGC 59.253 41.667 0.00 0.00 30.09 4.17
1909 2026 7.325599 GTAGTACTGTTTTACTACCACGTTG 57.674 40.000 5.39 0.00 44.68 4.10
1918 2035 9.889128 TGTTTTAACTGGTAGTACTGTTTTACT 57.111 29.630 5.39 0.00 36.28 2.24
1921 2038 9.623000 ATCTGTTTTAACTGGTAGTACTGTTTT 57.377 29.630 5.39 0.00 34.84 2.43
1996 2114 3.397482 AGCCGTATGCATCTTTCTGATC 58.603 45.455 0.19 0.00 44.83 2.92
2161 2286 0.468214 TTCAACCGGTTTGGATGGCA 60.468 50.000 19.55 0.00 40.78 4.92
2206 2331 1.340088 TTGGTTACTGCGTCTACCCA 58.660 50.000 0.00 0.00 0.00 4.51
2262 2387 1.655484 CCACAGCGTTGATCAGCATA 58.345 50.000 6.16 0.00 35.48 3.14
2265 2390 2.482374 GCCACAGCGTTGATCAGC 59.518 61.111 6.16 0.00 0.00 4.26
2267 2392 2.359850 GGGCCACAGCGTTGATCA 60.360 61.111 6.16 0.00 41.24 2.92
2321 2446 7.986889 ACTGCAGAAATGATTTGGTTTTTAACT 59.013 29.630 23.35 0.00 0.00 2.24
2420 2546 4.580995 TCAACATGTTATTTGGAACGTGGT 59.419 37.500 11.53 3.74 45.14 4.16
2563 2689 1.178534 CGCAATTGGGTGGGTTCTGT 61.179 55.000 14.05 0.00 0.00 3.41
2677 2804 2.906691 AGCATCATTCCTTCCTCGAG 57.093 50.000 5.13 5.13 0.00 4.04
2693 2820 4.014406 TCAGGACGTCATAAACTCTAGCA 58.986 43.478 18.91 0.00 0.00 3.49
2713 2840 5.116180 GTTCTCGGTCAAATCCATGTATCA 58.884 41.667 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.