Multiple sequence alignment - TraesCS5B01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G293000 chr5B 100.000 2585 0 0 1 2585 478328117 478330701 0.000000e+00 4774
1 TraesCS5B01G293000 chr5B 79.859 1137 161 43 125 1230 478373598 478374697 0.000000e+00 769
2 TraesCS5B01G293000 chr5B 79.664 595 78 29 1280 1855 478374707 478375277 3.120000e-104 388
3 TraesCS5B01G293000 chr5B 84.492 374 40 10 562 932 478411183 478411541 1.140000e-93 353
4 TraesCS5B01G293000 chr5D 94.749 1771 70 5 1 1768 398304095 398305845 0.000000e+00 2734
5 TraesCS5B01G293000 chr5D 92.547 1704 90 20 51 1748 398199826 398201498 0.000000e+00 2409
6 TraesCS5B01G293000 chr5D 91.553 438 29 5 2155 2585 398310124 398310560 4.760000e-167 597
7 TraesCS5B01G293000 chr5D 80.515 621 102 12 791 1398 398426372 398426986 2.340000e-125 459
8 TraesCS5B01G293000 chr5D 75.813 492 72 31 1 471 398452747 398453212 3.370000e-49 206
9 TraesCS5B01G293000 chr5A 91.734 1851 131 10 51 1890 503324948 503326787 0.000000e+00 2551
10 TraesCS5B01G293000 chr5A 94.270 1082 38 10 1 1069 503255515 503256585 0.000000e+00 1633
11 TraesCS5B01G293000 chr5A 93.939 66 3 1 1 65 503324868 503324933 5.890000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G293000 chr5B 478328117 478330701 2584 False 4774.0 4774 100.0000 1 2585 1 chr5B.!!$F1 2584
1 TraesCS5B01G293000 chr5B 478373598 478375277 1679 False 578.5 769 79.7615 125 1855 2 chr5B.!!$F3 1730
2 TraesCS5B01G293000 chr5D 398304095 398305845 1750 False 2734.0 2734 94.7490 1 1768 1 chr5D.!!$F2 1767
3 TraesCS5B01G293000 chr5D 398199826 398201498 1672 False 2409.0 2409 92.5470 51 1748 1 chr5D.!!$F1 1697
4 TraesCS5B01G293000 chr5D 398426372 398426986 614 False 459.0 459 80.5150 791 1398 1 chr5D.!!$F4 607
5 TraesCS5B01G293000 chr5A 503255515 503256585 1070 False 1633.0 1633 94.2700 1 1069 1 chr5A.!!$F1 1068
6 TraesCS5B01G293000 chr5A 503324868 503326787 1919 False 1325.0 2551 92.8365 1 1890 2 chr5A.!!$F2 1889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 193 0.381801 ACTTGTGCACCAGCTTTTCG 59.618 50.0 17.37 0.0 42.74 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 1983 0.735471 TAATAGCGGCGCAAATGCAA 59.265 45.0 35.02 12.82 42.21 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 193 0.381801 ACTTGTGCACCAGCTTTTCG 59.618 50.000 17.37 0.00 42.74 3.46
192 227 1.436195 GAAAGCACCTGTGTCGCACA 61.436 55.000 11.28 11.28 42.45 4.57
229 272 1.279527 TTTGACACGATCGACGCCAC 61.280 55.000 24.34 7.25 46.94 5.01
322 371 1.809547 GAAGAACCAGAAGAAGCTGCC 59.190 52.381 0.00 0.00 34.56 4.85
323 372 0.767375 AGAACCAGAAGAAGCTGCCA 59.233 50.000 0.00 0.00 34.56 4.92
324 373 0.877743 GAACCAGAAGAAGCTGCCAC 59.122 55.000 0.00 0.00 34.56 5.01
440 491 2.222729 CGCGTACTTTACAATCTGGCAC 60.223 50.000 0.00 0.00 0.00 5.01
560 631 7.732222 AAGAGATACTGGAAAGTTGAGATCT 57.268 36.000 0.00 0.00 0.00 2.75
675 748 4.357918 TCTTTAGCTTGCTTTCCACTCT 57.642 40.909 0.00 0.00 0.00 3.24
753 828 4.935352 TTGTGCCTATGCTTGTTTTTCT 57.065 36.364 0.00 0.00 38.71 2.52
764 839 3.490896 GCTTGTTTTTCTAAGCTTGTGCC 59.509 43.478 9.86 0.00 44.41 5.01
1020 1109 0.178967 TGAAGATTGGCAAGGGCACA 60.179 50.000 5.96 0.00 43.71 4.57
1252 1348 2.124983 CGCTCCATGGTGGTGAGG 60.125 66.667 12.58 0.00 39.03 3.86
1440 1549 4.790765 ACTCGATGAGTGTGATGAAGAA 57.209 40.909 0.00 0.00 41.76 2.52
1455 1564 1.000496 GAAGAAGTCGACGACCAACCT 60.000 52.381 23.76 12.70 32.18 3.50
1606 1715 5.845103 AGTGATCTTGTGAGCTCATATCTG 58.155 41.667 21.47 10.52 31.34 2.90
1692 1802 0.905357 AGATGGTGGGTGTGAGCTAC 59.095 55.000 0.00 0.00 0.00 3.58
1736 1846 3.201708 AGGGAGAAAAGGAGATGGACATG 59.798 47.826 0.00 0.00 0.00 3.21
1754 1864 1.671379 GGGTTGTCTGCCGGAGAAC 60.671 63.158 5.05 5.02 44.42 3.01
1798 1910 6.105333 CACACAAATGAGTTTTCTTTGGGAA 58.895 36.000 3.72 0.00 36.88 3.97
1866 1978 9.398170 CAGATGTTTACCAAAACTATCAAAGTG 57.602 33.333 3.01 0.00 44.44 3.16
1871 1983 8.793592 GTTTACCAAAACTATCAAAGTGATCCT 58.206 33.333 0.00 0.00 41.52 3.24
1884 1996 1.587088 GATCCTTGCATTTGCGCCG 60.587 57.895 4.18 0.00 45.83 6.46
1890 2002 0.735471 TTGCATTTGCGCCGCTATTA 59.265 45.000 11.67 0.00 45.83 0.98
1891 2003 0.950836 TGCATTTGCGCCGCTATTAT 59.049 45.000 11.67 0.00 45.83 1.28
1892 2004 1.336440 TGCATTTGCGCCGCTATTATT 59.664 42.857 11.67 0.00 45.83 1.40
1893 2005 2.550180 TGCATTTGCGCCGCTATTATTA 59.450 40.909 11.67 0.00 45.83 0.98
1894 2006 3.190327 TGCATTTGCGCCGCTATTATTAT 59.810 39.130 11.67 0.00 45.83 1.28
1895 2007 4.165779 GCATTTGCGCCGCTATTATTATT 58.834 39.130 11.67 0.00 0.00 1.40
1896 2008 4.621034 GCATTTGCGCCGCTATTATTATTT 59.379 37.500 11.67 0.00 0.00 1.40
1897 2009 5.118510 GCATTTGCGCCGCTATTATTATTTT 59.881 36.000 11.67 0.00 0.00 1.82
1898 2010 6.346518 GCATTTGCGCCGCTATTATTATTTTT 60.347 34.615 11.67 0.00 0.00 1.94
1899 2011 6.503616 TTTGCGCCGCTATTATTATTTTTG 57.496 33.333 11.67 0.00 0.00 2.44
1900 2012 3.978217 TGCGCCGCTATTATTATTTTTGC 59.022 39.130 11.67 0.00 0.00 3.68
1901 2013 3.978217 GCGCCGCTATTATTATTTTTGCA 59.022 39.130 0.00 0.00 0.00 4.08
1902 2014 4.621034 GCGCCGCTATTATTATTTTTGCAT 59.379 37.500 0.00 0.00 0.00 3.96
1903 2015 5.797934 GCGCCGCTATTATTATTTTTGCATA 59.202 36.000 0.00 0.00 0.00 3.14
1904 2016 6.472163 GCGCCGCTATTATTATTTTTGCATAT 59.528 34.615 0.00 0.00 0.00 1.78
1905 2017 7.642194 GCGCCGCTATTATTATTTTTGCATATA 59.358 33.333 0.00 0.00 0.00 0.86
1906 2018 9.663904 CGCCGCTATTATTATTTTTGCATATAT 57.336 29.630 0.00 0.00 0.00 0.86
2007 2119 9.023962 TGGACCATTATTTCATCTAAATATGCC 57.976 33.333 0.00 0.00 39.28 4.40
2008 2120 9.247861 GGACCATTATTTCATCTAAATATGCCT 57.752 33.333 0.00 0.00 39.28 4.75
2010 2122 9.592196 ACCATTATTTCATCTAAATATGCCTGT 57.408 29.630 0.00 0.00 39.28 4.00
2026 2138 9.912634 AATATGCCTGTACAAAATTACATATGC 57.087 29.630 1.58 0.00 31.67 3.14
2027 2139 7.587037 ATGCCTGTACAAAATTACATATGCT 57.413 32.000 1.58 0.00 31.51 3.79
2028 2140 8.690203 ATGCCTGTACAAAATTACATATGCTA 57.310 30.769 1.58 0.00 31.51 3.49
2029 2141 7.925993 TGCCTGTACAAAATTACATATGCTAC 58.074 34.615 1.58 0.00 31.51 3.58
2030 2142 7.773224 TGCCTGTACAAAATTACATATGCTACT 59.227 33.333 1.58 0.00 31.51 2.57
2031 2143 9.268268 GCCTGTACAAAATTACATATGCTACTA 57.732 33.333 1.58 0.00 31.51 1.82
2049 2161 7.389232 TGCTACTATAATGAGAACATCCATGG 58.611 38.462 4.97 4.97 35.50 3.66
2050 2162 7.235399 TGCTACTATAATGAGAACATCCATGGA 59.765 37.037 18.88 18.88 35.50 3.41
2051 2163 8.097038 GCTACTATAATGAGAACATCCATGGAA 58.903 37.037 20.67 0.00 35.50 3.53
2054 2166 9.872684 ACTATAATGAGAACATCCATGGAAAAT 57.127 29.630 20.67 7.43 35.50 1.82
2106 2218 9.495572 AGGTGAGTAATCTATATTTGCTTTAGC 57.504 33.333 0.00 0.00 42.50 3.09
2122 2234 6.857437 GCTTTAGCAAATTATATCCCCCAT 57.143 37.500 0.00 0.00 41.59 4.00
2123 2235 7.954666 GCTTTAGCAAATTATATCCCCCATA 57.045 36.000 0.00 0.00 41.59 2.74
2124 2236 8.539117 GCTTTAGCAAATTATATCCCCCATAT 57.461 34.615 0.00 0.00 41.59 1.78
2125 2237 8.981659 GCTTTAGCAAATTATATCCCCCATATT 58.018 33.333 0.00 0.00 41.59 1.28
2130 2242 9.619842 AGCAAATTATATCCCCCATATTTTTCT 57.380 29.630 0.00 0.00 0.00 2.52
2165 2277 8.625651 ACACTTAAATGTTGCACTGTTAATACA 58.374 29.630 0.00 0.00 0.00 2.29
2166 2278 9.624697 CACTTAAATGTTGCACTGTTAATACAT 57.375 29.630 0.00 0.00 32.86 2.29
2191 2303 9.899226 ATAATAAGACAACAAAGAAAGAAGTGC 57.101 29.630 0.00 0.00 0.00 4.40
2192 2304 4.639135 AGACAACAAAGAAAGAAGTGCC 57.361 40.909 0.00 0.00 0.00 5.01
2193 2305 4.273318 AGACAACAAAGAAAGAAGTGCCT 58.727 39.130 0.00 0.00 0.00 4.75
2194 2306 4.336713 AGACAACAAAGAAAGAAGTGCCTC 59.663 41.667 0.00 0.00 0.00 4.70
2195 2307 4.016444 ACAACAAAGAAAGAAGTGCCTCA 58.984 39.130 0.00 0.00 0.00 3.86
2196 2308 4.462483 ACAACAAAGAAAGAAGTGCCTCAA 59.538 37.500 0.00 0.00 0.00 3.02
2197 2309 5.127682 ACAACAAAGAAAGAAGTGCCTCAAT 59.872 36.000 0.00 0.00 0.00 2.57
2198 2310 6.321181 ACAACAAAGAAAGAAGTGCCTCAATA 59.679 34.615 0.00 0.00 0.00 1.90
2199 2311 7.014615 ACAACAAAGAAAGAAGTGCCTCAATAT 59.985 33.333 0.00 0.00 0.00 1.28
2200 2312 6.917533 ACAAAGAAAGAAGTGCCTCAATATG 58.082 36.000 0.00 0.00 0.00 1.78
2201 2313 6.491403 ACAAAGAAAGAAGTGCCTCAATATGT 59.509 34.615 0.00 0.00 0.00 2.29
2202 2314 7.014615 ACAAAGAAAGAAGTGCCTCAATATGTT 59.985 33.333 0.00 0.00 0.00 2.71
2203 2315 7.530426 AAGAAAGAAGTGCCTCAATATGTTT 57.470 32.000 0.00 0.00 0.00 2.83
2204 2316 7.530426 AGAAAGAAGTGCCTCAATATGTTTT 57.470 32.000 0.00 0.00 0.00 2.43
2205 2317 7.955918 AGAAAGAAGTGCCTCAATATGTTTTT 58.044 30.769 0.00 0.00 0.00 1.94
2233 2345 8.809159 TTTCATTATTTGTTCGAGAAAATGCA 57.191 26.923 14.36 0.00 0.00 3.96
2234 2346 8.809159 TTCATTATTTGTTCGAGAAAATGCAA 57.191 26.923 14.36 5.56 0.00 4.08
2235 2347 8.226543 TCATTATTTGTTCGAGAAAATGCAAC 57.773 30.769 14.36 0.00 0.00 4.17
2236 2348 7.328249 TCATTATTTGTTCGAGAAAATGCAACC 59.672 33.333 14.36 0.00 0.00 3.77
2237 2349 4.377839 TTTGTTCGAGAAAATGCAACCA 57.622 36.364 0.00 0.00 0.00 3.67
2238 2350 4.377839 TTGTTCGAGAAAATGCAACCAA 57.622 36.364 0.00 0.00 0.00 3.67
2239 2351 4.582701 TGTTCGAGAAAATGCAACCAAT 57.417 36.364 0.00 0.00 0.00 3.16
2240 2352 5.697473 TGTTCGAGAAAATGCAACCAATA 57.303 34.783 0.00 0.00 0.00 1.90
2241 2353 6.078202 TGTTCGAGAAAATGCAACCAATAA 57.922 33.333 0.00 0.00 0.00 1.40
2242 2354 6.686630 TGTTCGAGAAAATGCAACCAATAAT 58.313 32.000 0.00 0.00 0.00 1.28
2243 2355 7.151308 TGTTCGAGAAAATGCAACCAATAATT 58.849 30.769 0.00 0.00 0.00 1.40
2244 2356 8.300286 TGTTCGAGAAAATGCAACCAATAATTA 58.700 29.630 0.00 0.00 0.00 1.40
2245 2357 9.301153 GTTCGAGAAAATGCAACCAATAATTAT 57.699 29.630 0.00 0.00 0.00 1.28
2278 2390 7.672983 AATATTGGTGGTTGATATCTTAGCG 57.327 36.000 3.98 0.00 0.00 4.26
2279 2391 4.481368 TTGGTGGTTGATATCTTAGCGT 57.519 40.909 3.98 0.00 0.00 5.07
2280 2392 5.601583 TTGGTGGTTGATATCTTAGCGTA 57.398 39.130 3.98 0.00 0.00 4.42
2281 2393 5.801531 TGGTGGTTGATATCTTAGCGTAT 57.198 39.130 3.98 0.00 0.00 3.06
2282 2394 5.538118 TGGTGGTTGATATCTTAGCGTATG 58.462 41.667 3.98 0.00 0.00 2.39
2283 2395 5.069914 TGGTGGTTGATATCTTAGCGTATGT 59.930 40.000 3.98 0.00 0.00 2.29
2284 2396 5.634020 GGTGGTTGATATCTTAGCGTATGTC 59.366 44.000 3.98 0.00 0.00 3.06
2285 2397 5.634020 GTGGTTGATATCTTAGCGTATGTCC 59.366 44.000 3.98 0.00 0.00 4.02
2286 2398 5.538813 TGGTTGATATCTTAGCGTATGTCCT 59.461 40.000 3.98 0.00 0.00 3.85
2287 2399 6.041637 TGGTTGATATCTTAGCGTATGTCCTT 59.958 38.462 3.98 0.00 0.00 3.36
2288 2400 6.929606 GGTTGATATCTTAGCGTATGTCCTTT 59.070 38.462 3.98 0.00 0.00 3.11
2289 2401 7.441458 GGTTGATATCTTAGCGTATGTCCTTTT 59.559 37.037 3.98 0.00 0.00 2.27
2290 2402 8.488764 GTTGATATCTTAGCGTATGTCCTTTTC 58.511 37.037 3.98 0.00 0.00 2.29
2291 2403 7.722363 TGATATCTTAGCGTATGTCCTTTTCA 58.278 34.615 3.98 0.00 0.00 2.69
2292 2404 7.652105 TGATATCTTAGCGTATGTCCTTTTCAC 59.348 37.037 3.98 0.00 0.00 3.18
2293 2405 5.401531 TCTTAGCGTATGTCCTTTTCACT 57.598 39.130 0.00 0.00 0.00 3.41
2294 2406 6.519679 TCTTAGCGTATGTCCTTTTCACTA 57.480 37.500 0.00 0.00 0.00 2.74
2295 2407 6.327934 TCTTAGCGTATGTCCTTTTCACTAC 58.672 40.000 0.00 0.00 0.00 2.73
2296 2408 4.803098 AGCGTATGTCCTTTTCACTACT 57.197 40.909 0.00 0.00 0.00 2.57
2297 2409 5.909621 AGCGTATGTCCTTTTCACTACTA 57.090 39.130 0.00 0.00 0.00 1.82
2298 2410 5.648572 AGCGTATGTCCTTTTCACTACTAC 58.351 41.667 0.00 0.00 0.00 2.73
2299 2411 5.184479 AGCGTATGTCCTTTTCACTACTACA 59.816 40.000 0.00 0.00 0.00 2.74
2300 2412 5.287992 GCGTATGTCCTTTTCACTACTACAC 59.712 44.000 0.00 0.00 0.00 2.90
2301 2413 6.384224 CGTATGTCCTTTTCACTACTACACA 58.616 40.000 0.00 0.00 0.00 3.72
2302 2414 6.864685 CGTATGTCCTTTTCACTACTACACAA 59.135 38.462 0.00 0.00 0.00 3.33
2303 2415 7.383029 CGTATGTCCTTTTCACTACTACACAAA 59.617 37.037 0.00 0.00 0.00 2.83
2304 2416 9.048446 GTATGTCCTTTTCACTACTACACAAAA 57.952 33.333 0.00 0.00 0.00 2.44
2305 2417 7.548196 TGTCCTTTTCACTACTACACAAAAG 57.452 36.000 0.00 0.00 34.96 2.27
2306 2418 6.037830 TGTCCTTTTCACTACTACACAAAAGC 59.962 38.462 0.00 0.00 34.21 3.51
2307 2419 5.529800 TCCTTTTCACTACTACACAAAAGCC 59.470 40.000 0.00 0.00 34.21 4.35
2308 2420 5.531287 CCTTTTCACTACTACACAAAAGCCT 59.469 40.000 0.00 0.00 34.21 4.58
2309 2421 6.708949 CCTTTTCACTACTACACAAAAGCCTA 59.291 38.462 0.00 0.00 34.21 3.93
2310 2422 7.390718 CCTTTTCACTACTACACAAAAGCCTAT 59.609 37.037 0.00 0.00 34.21 2.57
2311 2423 8.685838 TTTTCACTACTACACAAAAGCCTATT 57.314 30.769 0.00 0.00 0.00 1.73
2312 2424 7.900782 TTCACTACTACACAAAAGCCTATTC 57.099 36.000 0.00 0.00 0.00 1.75
2313 2425 6.097356 TCACTACTACACAAAAGCCTATTCG 58.903 40.000 0.00 0.00 0.00 3.34
2314 2426 6.071784 TCACTACTACACAAAAGCCTATTCGA 60.072 38.462 0.00 0.00 0.00 3.71
2315 2427 6.253727 CACTACTACACAAAAGCCTATTCGAG 59.746 42.308 0.00 0.00 0.00 4.04
2331 2443 2.193248 AGGCGGGCCTGAATTAGC 59.807 61.111 18.31 3.66 46.22 3.09
2332 2444 2.193248 GGCGGGCCTGAATTAGCT 59.807 61.111 18.31 0.00 0.00 3.32
2333 2445 1.453928 GGCGGGCCTGAATTAGCTT 60.454 57.895 18.31 0.00 0.00 3.74
2334 2446 1.037579 GGCGGGCCTGAATTAGCTTT 61.038 55.000 18.31 0.00 0.00 3.51
2335 2447 0.382158 GCGGGCCTGAATTAGCTTTC 59.618 55.000 18.31 0.00 0.00 2.62
2336 2448 1.025041 CGGGCCTGAATTAGCTTTCC 58.975 55.000 5.28 0.00 0.00 3.13
2337 2449 1.681780 CGGGCCTGAATTAGCTTTCCA 60.682 52.381 5.28 0.00 0.00 3.53
2338 2450 2.670939 GGGCCTGAATTAGCTTTCCAT 58.329 47.619 0.84 0.00 0.00 3.41
2339 2451 2.363359 GGGCCTGAATTAGCTTTCCATG 59.637 50.000 0.84 0.00 0.00 3.66
2340 2452 2.363359 GGCCTGAATTAGCTTTCCATGG 59.637 50.000 4.97 4.97 0.00 3.66
2341 2453 3.026694 GCCTGAATTAGCTTTCCATGGT 58.973 45.455 12.58 0.00 0.00 3.55
2342 2454 3.181483 GCCTGAATTAGCTTTCCATGGTG 60.181 47.826 12.58 4.75 0.00 4.17
2343 2455 4.272489 CCTGAATTAGCTTTCCATGGTGA 58.728 43.478 12.58 0.00 0.00 4.02
2344 2456 4.891756 CCTGAATTAGCTTTCCATGGTGAT 59.108 41.667 12.58 4.95 0.00 3.06
2345 2457 5.361857 CCTGAATTAGCTTTCCATGGTGATT 59.638 40.000 12.58 0.03 0.00 2.57
2346 2458 6.127253 CCTGAATTAGCTTTCCATGGTGATTT 60.127 38.462 12.58 0.00 0.00 2.17
2347 2459 7.243604 TGAATTAGCTTTCCATGGTGATTTT 57.756 32.000 12.58 0.80 0.00 1.82
2348 2460 7.678837 TGAATTAGCTTTCCATGGTGATTTTT 58.321 30.769 12.58 0.00 0.00 1.94
2349 2461 7.818930 TGAATTAGCTTTCCATGGTGATTTTTC 59.181 33.333 12.58 7.67 0.00 2.29
2350 2462 6.916360 TTAGCTTTCCATGGTGATTTTTCT 57.084 33.333 12.58 2.50 0.00 2.52
2351 2463 8.593945 ATTAGCTTTCCATGGTGATTTTTCTA 57.406 30.769 12.58 1.60 0.00 2.10
2352 2464 6.272822 AGCTTTCCATGGTGATTTTTCTAC 57.727 37.500 12.58 0.00 0.00 2.59
2353 2465 5.185828 AGCTTTCCATGGTGATTTTTCTACC 59.814 40.000 12.58 0.00 35.05 3.18
2354 2466 5.185828 GCTTTCCATGGTGATTTTTCTACCT 59.814 40.000 12.58 0.00 35.51 3.08
2355 2467 6.588719 TTTCCATGGTGATTTTTCTACCTG 57.411 37.500 12.58 0.00 35.51 4.00
2356 2468 4.016444 TCCATGGTGATTTTTCTACCTGC 58.984 43.478 12.58 0.00 35.51 4.85
2357 2469 3.131046 CCATGGTGATTTTTCTACCTGCC 59.869 47.826 2.57 0.00 35.51 4.85
2358 2470 2.432444 TGGTGATTTTTCTACCTGCCG 58.568 47.619 0.00 0.00 35.51 5.69
2359 2471 1.132453 GGTGATTTTTCTACCTGCCGC 59.868 52.381 0.00 0.00 0.00 6.53
2360 2472 2.084546 GTGATTTTTCTACCTGCCGCT 58.915 47.619 0.00 0.00 0.00 5.52
2361 2473 2.096013 GTGATTTTTCTACCTGCCGCTC 59.904 50.000 0.00 0.00 0.00 5.03
2362 2474 2.027192 TGATTTTTCTACCTGCCGCTCT 60.027 45.455 0.00 0.00 0.00 4.09
2363 2475 2.561478 TTTTTCTACCTGCCGCTCTT 57.439 45.000 0.00 0.00 0.00 2.85
2364 2476 1.808411 TTTTCTACCTGCCGCTCTTG 58.192 50.000 0.00 0.00 0.00 3.02
2365 2477 0.036388 TTTCTACCTGCCGCTCTTGG 60.036 55.000 0.00 0.00 0.00 3.61
2375 2487 4.379174 GCTCTTGGCGGTCTCAAA 57.621 55.556 0.00 0.00 0.00 2.69
2376 2488 2.859992 GCTCTTGGCGGTCTCAAAT 58.140 52.632 0.00 0.00 0.00 2.32
2377 2489 2.024176 GCTCTTGGCGGTCTCAAATA 57.976 50.000 0.00 0.00 0.00 1.40
2378 2490 1.936547 GCTCTTGGCGGTCTCAAATAG 59.063 52.381 0.00 0.00 0.00 1.73
2379 2491 2.418746 GCTCTTGGCGGTCTCAAATAGA 60.419 50.000 0.00 0.00 0.00 1.98
2380 2492 3.742640 GCTCTTGGCGGTCTCAAATAGAT 60.743 47.826 0.00 0.00 36.36 1.98
2381 2493 4.501571 GCTCTTGGCGGTCTCAAATAGATA 60.502 45.833 0.00 0.00 36.36 1.98
2382 2494 4.945246 TCTTGGCGGTCTCAAATAGATAC 58.055 43.478 0.00 0.00 36.36 2.24
2383 2495 3.746045 TGGCGGTCTCAAATAGATACC 57.254 47.619 0.00 0.00 39.48 2.73
2384 2496 3.305720 TGGCGGTCTCAAATAGATACCT 58.694 45.455 0.00 0.00 40.42 3.08
2385 2497 3.321111 TGGCGGTCTCAAATAGATACCTC 59.679 47.826 0.00 0.00 40.42 3.85
2386 2498 3.574826 GGCGGTCTCAAATAGATACCTCT 59.425 47.826 0.00 0.00 40.42 3.69
2387 2499 4.039366 GGCGGTCTCAAATAGATACCTCTT 59.961 45.833 0.00 0.00 40.42 2.85
2388 2500 5.453480 GGCGGTCTCAAATAGATACCTCTTT 60.453 44.000 0.00 0.00 40.42 2.52
2389 2501 6.049790 GCGGTCTCAAATAGATACCTCTTTT 58.950 40.000 0.00 0.00 40.42 2.27
2390 2502 7.208080 GCGGTCTCAAATAGATACCTCTTTTA 58.792 38.462 0.00 0.00 40.42 1.52
2391 2503 7.382759 GCGGTCTCAAATAGATACCTCTTTTAG 59.617 40.741 0.00 0.00 40.42 1.85
2392 2504 7.868415 CGGTCTCAAATAGATACCTCTTTTAGG 59.132 40.741 0.00 0.00 43.44 2.69
2402 2514 1.886542 CCTCTTTTAGGTTGTGTGCCC 59.113 52.381 0.00 0.00 40.94 5.36
2403 2515 2.582052 CTCTTTTAGGTTGTGTGCCCA 58.418 47.619 0.00 0.00 0.00 5.36
2404 2516 2.554032 CTCTTTTAGGTTGTGTGCCCAG 59.446 50.000 0.00 0.00 0.00 4.45
2405 2517 2.092103 TCTTTTAGGTTGTGTGCCCAGT 60.092 45.455 0.00 0.00 0.00 4.00
2406 2518 3.136809 TCTTTTAGGTTGTGTGCCCAGTA 59.863 43.478 0.00 0.00 0.00 2.74
2407 2519 3.799432 TTTAGGTTGTGTGCCCAGTAT 57.201 42.857 0.00 0.00 0.00 2.12
2408 2520 3.343941 TTAGGTTGTGTGCCCAGTATC 57.656 47.619 0.00 0.00 0.00 2.24
2409 2521 0.328258 AGGTTGTGTGCCCAGTATCC 59.672 55.000 0.00 0.00 0.00 2.59
2410 2522 0.037590 GGTTGTGTGCCCAGTATCCA 59.962 55.000 0.00 0.00 0.00 3.41
2411 2523 1.165270 GTTGTGTGCCCAGTATCCAC 58.835 55.000 0.00 0.00 0.00 4.02
2412 2524 0.037590 TTGTGTGCCCAGTATCCACC 59.962 55.000 0.00 0.00 0.00 4.61
2413 2525 0.840288 TGTGTGCCCAGTATCCACCT 60.840 55.000 0.00 0.00 0.00 4.00
2414 2526 0.328258 GTGTGCCCAGTATCCACCTT 59.672 55.000 0.00 0.00 0.00 3.50
2415 2527 0.327924 TGTGCCCAGTATCCACCTTG 59.672 55.000 0.00 0.00 0.00 3.61
2416 2528 0.394352 GTGCCCAGTATCCACCTTGG 60.394 60.000 0.00 0.00 39.43 3.61
2417 2529 0.844661 TGCCCAGTATCCACCTTGGT 60.845 55.000 0.00 0.00 39.03 3.67
2418 2530 0.107165 GCCCAGTATCCACCTTGGTC 60.107 60.000 0.00 0.00 39.03 4.02
2419 2531 1.584724 CCCAGTATCCACCTTGGTCT 58.415 55.000 0.00 0.00 39.03 3.85
2420 2532 1.210478 CCCAGTATCCACCTTGGTCTG 59.790 57.143 0.00 0.00 39.03 3.51
2421 2533 2.187958 CCAGTATCCACCTTGGTCTGA 58.812 52.381 6.92 0.34 39.03 3.27
2422 2534 2.169352 CCAGTATCCACCTTGGTCTGAG 59.831 54.545 6.92 0.00 39.03 3.35
2423 2535 3.099905 CAGTATCCACCTTGGTCTGAGA 58.900 50.000 0.74 0.00 39.03 3.27
2424 2536 3.100671 AGTATCCACCTTGGTCTGAGAC 58.899 50.000 3.47 3.47 39.03 3.36
2436 2548 2.006888 GTCTGAGACCTCTCTGAGACG 58.993 57.143 11.10 2.62 46.71 4.18
2437 2549 1.626321 TCTGAGACCTCTCTGAGACGT 59.374 52.381 2.58 6.14 43.14 4.34
2438 2550 1.737236 CTGAGACCTCTCTGAGACGTG 59.263 57.143 12.96 3.84 42.37 4.49
2439 2551 1.072489 TGAGACCTCTCTGAGACGTGT 59.928 52.381 12.96 9.57 43.25 4.49
2440 2552 2.156098 GAGACCTCTCTGAGACGTGTT 58.844 52.381 12.96 3.00 39.81 3.32
2441 2553 2.554893 GAGACCTCTCTGAGACGTGTTT 59.445 50.000 12.96 2.85 39.81 2.83
2442 2554 2.959707 AGACCTCTCTGAGACGTGTTTT 59.040 45.455 12.96 0.00 0.00 2.43
2443 2555 3.385111 AGACCTCTCTGAGACGTGTTTTT 59.615 43.478 12.96 0.00 0.00 1.94
2460 2572 2.791347 TTTTAGCACGCCCTATTGGA 57.209 45.000 0.00 0.00 35.39 3.53
2461 2573 2.791347 TTTAGCACGCCCTATTGGAA 57.209 45.000 0.00 0.00 35.39 3.53
2462 2574 2.791347 TTAGCACGCCCTATTGGAAA 57.209 45.000 0.00 0.00 35.39 3.13
2463 2575 2.791347 TAGCACGCCCTATTGGAAAA 57.209 45.000 0.00 0.00 35.39 2.29
2464 2576 1.173913 AGCACGCCCTATTGGAAAAC 58.826 50.000 0.00 0.00 35.39 2.43
2465 2577 0.179174 GCACGCCCTATTGGAAAACG 60.179 55.000 0.00 0.00 35.39 3.60
2466 2578 1.161843 CACGCCCTATTGGAAAACGT 58.838 50.000 0.00 0.00 35.39 3.99
2467 2579 1.135803 CACGCCCTATTGGAAAACGTG 60.136 52.381 13.12 13.12 38.62 4.49
2468 2580 1.161843 CGCCCTATTGGAAAACGTGT 58.838 50.000 0.00 0.00 35.39 4.49
2469 2581 1.538075 CGCCCTATTGGAAAACGTGTT 59.462 47.619 0.00 0.00 35.39 3.32
2470 2582 2.413634 CGCCCTATTGGAAAACGTGTTC 60.414 50.000 10.16 10.16 35.39 3.18
2471 2583 2.554893 GCCCTATTGGAAAACGTGTTCA 59.445 45.455 19.84 0.72 35.39 3.18
2472 2584 3.192633 GCCCTATTGGAAAACGTGTTCAT 59.807 43.478 19.84 8.46 35.39 2.57
2473 2585 4.674362 GCCCTATTGGAAAACGTGTTCATC 60.674 45.833 19.84 4.42 35.39 2.92
2474 2586 4.142469 CCCTATTGGAAAACGTGTTCATCC 60.142 45.833 19.84 4.38 35.39 3.51
2475 2587 4.457603 CCTATTGGAAAACGTGTTCATCCA 59.542 41.667 19.84 7.17 36.97 3.41
2476 2588 5.125417 CCTATTGGAAAACGTGTTCATCCAT 59.875 40.000 19.84 8.14 37.90 3.41
2477 2589 3.913548 TGGAAAACGTGTTCATCCATG 57.086 42.857 19.84 0.00 35.14 3.66
2478 2590 3.481453 TGGAAAACGTGTTCATCCATGA 58.519 40.909 19.84 0.00 35.14 3.07
2479 2591 3.252215 TGGAAAACGTGTTCATCCATGAC 59.748 43.478 19.84 0.88 35.14 3.06
2480 2592 3.479006 GAAAACGTGTTCATCCATGACG 58.521 45.455 13.73 0.00 36.36 4.35
2481 2593 2.163818 AACGTGTTCATCCATGACGT 57.836 45.000 0.00 0.00 39.42 4.34
2482 2594 1.710013 ACGTGTTCATCCATGACGTC 58.290 50.000 9.11 9.11 34.92 4.34
2483 2595 1.272490 ACGTGTTCATCCATGACGTCT 59.728 47.619 17.92 0.00 34.92 4.18
2484 2596 2.288825 ACGTGTTCATCCATGACGTCTT 60.289 45.455 17.92 7.74 34.92 3.01
2485 2597 2.345641 CGTGTTCATCCATGACGTCTTC 59.654 50.000 17.92 0.00 36.36 2.87
2486 2598 3.589988 GTGTTCATCCATGACGTCTTCT 58.410 45.455 17.92 0.00 36.36 2.85
2487 2599 3.614616 GTGTTCATCCATGACGTCTTCTC 59.385 47.826 17.92 0.00 36.36 2.87
2488 2600 3.511540 TGTTCATCCATGACGTCTTCTCT 59.488 43.478 17.92 0.00 36.36 3.10
2489 2601 4.705023 TGTTCATCCATGACGTCTTCTCTA 59.295 41.667 17.92 0.00 36.36 2.43
2490 2602 5.360999 TGTTCATCCATGACGTCTTCTCTAT 59.639 40.000 17.92 0.00 36.36 1.98
2491 2603 5.444663 TCATCCATGACGTCTTCTCTATG 57.555 43.478 17.92 10.45 0.00 2.23
2492 2604 3.717400 TCCATGACGTCTTCTCTATGC 57.283 47.619 17.92 0.00 0.00 3.14
2493 2605 2.033424 TCCATGACGTCTTCTCTATGCG 59.967 50.000 17.92 5.50 0.00 4.73
2494 2606 2.389059 CATGACGTCTTCTCTATGCGG 58.611 52.381 17.92 0.00 0.00 5.69
2495 2607 0.738975 TGACGTCTTCTCTATGCGGG 59.261 55.000 17.92 0.00 0.00 6.13
2496 2608 0.030908 GACGTCTTCTCTATGCGGGG 59.969 60.000 8.70 0.00 0.00 5.73
2497 2609 1.300233 CGTCTTCTCTATGCGGGGC 60.300 63.158 0.00 0.00 0.00 5.80
2498 2610 1.823295 GTCTTCTCTATGCGGGGCA 59.177 57.895 0.00 0.00 44.86 5.36
2499 2611 0.178068 GTCTTCTCTATGCGGGGCAA 59.822 55.000 0.00 0.00 43.62 4.52
2500 2612 0.908910 TCTTCTCTATGCGGGGCAAA 59.091 50.000 0.00 0.00 43.62 3.68
2501 2613 1.017387 CTTCTCTATGCGGGGCAAAC 58.983 55.000 0.00 0.00 43.62 2.93
2502 2614 0.618458 TTCTCTATGCGGGGCAAACT 59.382 50.000 0.00 0.00 43.62 2.66
2503 2615 0.178068 TCTCTATGCGGGGCAAACTC 59.822 55.000 0.00 0.00 43.62 3.01
2504 2616 1.153449 TCTATGCGGGGCAAACTCG 60.153 57.895 0.00 0.00 43.62 4.18
2505 2617 1.153449 CTATGCGGGGCAAACTCGA 60.153 57.895 0.00 0.00 43.62 4.04
2506 2618 0.742990 CTATGCGGGGCAAACTCGAA 60.743 55.000 0.00 0.00 43.62 3.71
2507 2619 0.107410 TATGCGGGGCAAACTCGAAT 60.107 50.000 0.00 0.00 43.62 3.34
2508 2620 1.656818 ATGCGGGGCAAACTCGAATG 61.657 55.000 0.00 0.00 43.62 2.67
2509 2621 3.051392 GCGGGGCAAACTCGAATGG 62.051 63.158 0.00 0.00 0.00 3.16
2510 2622 2.406616 CGGGGCAAACTCGAATGGG 61.407 63.158 0.00 0.00 0.00 4.00
2511 2623 2.710902 GGGGCAAACTCGAATGGGC 61.711 63.158 0.00 0.00 0.00 5.36
2512 2624 1.678970 GGGCAAACTCGAATGGGCT 60.679 57.895 0.00 0.00 0.00 5.19
2513 2625 1.508088 GGCAAACTCGAATGGGCTG 59.492 57.895 0.00 0.00 0.00 4.85
2514 2626 0.960364 GGCAAACTCGAATGGGCTGA 60.960 55.000 0.00 0.00 0.00 4.26
2515 2627 0.881118 GCAAACTCGAATGGGCTGAA 59.119 50.000 0.00 0.00 0.00 3.02
2516 2628 1.269448 GCAAACTCGAATGGGCTGAAA 59.731 47.619 0.00 0.00 0.00 2.69
2517 2629 2.094545 GCAAACTCGAATGGGCTGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
2518 2630 3.128589 GCAAACTCGAATGGGCTGAAATA 59.871 43.478 0.00 0.00 0.00 1.40
2519 2631 4.662145 CAAACTCGAATGGGCTGAAATAC 58.338 43.478 0.00 0.00 0.00 1.89
2520 2632 3.914426 ACTCGAATGGGCTGAAATACT 57.086 42.857 0.00 0.00 0.00 2.12
2521 2633 3.535561 ACTCGAATGGGCTGAAATACTG 58.464 45.455 0.00 0.00 0.00 2.74
2522 2634 2.874701 CTCGAATGGGCTGAAATACTGG 59.125 50.000 0.00 0.00 0.00 4.00
2523 2635 2.238646 TCGAATGGGCTGAAATACTGGT 59.761 45.455 0.00 0.00 0.00 4.00
2524 2636 2.355756 CGAATGGGCTGAAATACTGGTG 59.644 50.000 0.00 0.00 0.00 4.17
2525 2637 2.442236 ATGGGCTGAAATACTGGTGG 57.558 50.000 0.00 0.00 0.00 4.61
2526 2638 1.367346 TGGGCTGAAATACTGGTGGA 58.633 50.000 0.00 0.00 0.00 4.02
2527 2639 1.281867 TGGGCTGAAATACTGGTGGAG 59.718 52.381 0.00 0.00 0.00 3.86
2528 2640 1.383523 GGCTGAAATACTGGTGGAGC 58.616 55.000 0.00 0.00 0.00 4.70
2529 2641 1.009829 GCTGAAATACTGGTGGAGCG 58.990 55.000 0.00 0.00 0.00 5.03
2530 2642 1.405526 GCTGAAATACTGGTGGAGCGA 60.406 52.381 0.00 0.00 0.00 4.93
2531 2643 2.935238 GCTGAAATACTGGTGGAGCGAA 60.935 50.000 0.00 0.00 0.00 4.70
2532 2644 2.673368 CTGAAATACTGGTGGAGCGAAC 59.327 50.000 0.00 0.00 0.00 3.95
2533 2645 2.007608 GAAATACTGGTGGAGCGAACC 58.992 52.381 0.00 0.00 38.26 3.62
2534 2646 1.276622 AATACTGGTGGAGCGAACCT 58.723 50.000 6.98 0.00 38.60 3.50
2535 2647 1.276622 ATACTGGTGGAGCGAACCTT 58.723 50.000 6.98 0.00 38.60 3.50
2536 2648 0.320374 TACTGGTGGAGCGAACCTTG 59.680 55.000 6.98 3.40 38.60 3.61
2537 2649 2.281484 TGGTGGAGCGAACCTTGC 60.281 61.111 6.98 0.00 38.60 4.01
2544 2656 3.403936 AGCGAACCTTGCTCTTTGT 57.596 47.368 0.00 0.00 38.62 2.83
2545 2657 1.230324 AGCGAACCTTGCTCTTTGTC 58.770 50.000 0.00 0.00 38.62 3.18
2546 2658 0.110644 GCGAACCTTGCTCTTTGTCG 60.111 55.000 0.00 0.00 0.00 4.35
2547 2659 1.217882 CGAACCTTGCTCTTTGTCGT 58.782 50.000 0.00 0.00 0.00 4.34
2548 2660 1.192534 CGAACCTTGCTCTTTGTCGTC 59.807 52.381 0.00 0.00 0.00 4.20
2549 2661 2.210116 GAACCTTGCTCTTTGTCGTCA 58.790 47.619 0.00 0.00 0.00 4.35
2550 2662 2.550830 ACCTTGCTCTTTGTCGTCAT 57.449 45.000 0.00 0.00 0.00 3.06
2551 2663 3.678056 ACCTTGCTCTTTGTCGTCATA 57.322 42.857 0.00 0.00 0.00 2.15
2552 2664 4.207891 ACCTTGCTCTTTGTCGTCATAT 57.792 40.909 0.00 0.00 0.00 1.78
2553 2665 4.184629 ACCTTGCTCTTTGTCGTCATATC 58.815 43.478 0.00 0.00 0.00 1.63
2554 2666 3.557595 CCTTGCTCTTTGTCGTCATATCC 59.442 47.826 0.00 0.00 0.00 2.59
2555 2667 4.437239 CTTGCTCTTTGTCGTCATATCCT 58.563 43.478 0.00 0.00 0.00 3.24
2556 2668 3.785486 TGCTCTTTGTCGTCATATCCTG 58.215 45.455 0.00 0.00 0.00 3.86
2557 2669 3.126831 GCTCTTTGTCGTCATATCCTGG 58.873 50.000 0.00 0.00 0.00 4.45
2558 2670 3.722147 CTCTTTGTCGTCATATCCTGGG 58.278 50.000 0.00 0.00 0.00 4.45
2559 2671 2.158957 TCTTTGTCGTCATATCCTGGGC 60.159 50.000 0.00 0.00 0.00 5.36
2560 2672 1.199615 TTGTCGTCATATCCTGGGCA 58.800 50.000 0.00 0.00 0.00 5.36
2561 2673 0.464036 TGTCGTCATATCCTGGGCAC 59.536 55.000 0.00 0.00 0.00 5.01
2562 2674 0.464036 GTCGTCATATCCTGGGCACA 59.536 55.000 0.00 0.00 0.00 4.57
2563 2675 0.464036 TCGTCATATCCTGGGCACAC 59.536 55.000 0.00 0.00 0.00 3.82
2564 2676 0.177836 CGTCATATCCTGGGCACACA 59.822 55.000 0.00 0.00 0.00 3.72
2565 2677 1.202687 CGTCATATCCTGGGCACACAT 60.203 52.381 0.00 0.00 0.00 3.21
2566 2678 2.037121 CGTCATATCCTGGGCACACATA 59.963 50.000 0.00 0.00 0.00 2.29
2567 2679 3.306989 CGTCATATCCTGGGCACACATAT 60.307 47.826 0.00 0.00 0.00 1.78
2568 2680 4.081697 CGTCATATCCTGGGCACACATATA 60.082 45.833 0.00 0.00 0.00 0.86
2569 2681 5.568624 CGTCATATCCTGGGCACACATATAA 60.569 44.000 0.00 0.00 0.00 0.98
2570 2682 5.643777 GTCATATCCTGGGCACACATATAAC 59.356 44.000 0.00 0.00 0.00 1.89
2571 2683 2.613026 TCCTGGGCACACATATAACG 57.387 50.000 0.00 0.00 0.00 3.18
2572 2684 1.834896 TCCTGGGCACACATATAACGT 59.165 47.619 0.00 0.00 0.00 3.99
2573 2685 1.939934 CCTGGGCACACATATAACGTG 59.060 52.381 0.00 4.54 40.32 4.49
2574 2686 2.419436 CCTGGGCACACATATAACGTGA 60.419 50.000 11.48 0.00 37.80 4.35
2575 2687 3.266636 CTGGGCACACATATAACGTGAA 58.733 45.455 11.48 0.00 37.80 3.18
2576 2688 3.876914 CTGGGCACACATATAACGTGAAT 59.123 43.478 11.48 0.00 37.80 2.57
2577 2689 4.265893 TGGGCACACATATAACGTGAATT 58.734 39.130 11.48 0.00 37.80 2.17
2578 2690 4.702612 TGGGCACACATATAACGTGAATTT 59.297 37.500 11.48 0.00 37.80 1.82
2579 2691 5.034152 GGGCACACATATAACGTGAATTTG 58.966 41.667 11.48 0.00 37.80 2.32
2580 2692 5.163703 GGGCACACATATAACGTGAATTTGA 60.164 40.000 11.48 0.00 37.80 2.69
2581 2693 5.737290 GGCACACATATAACGTGAATTTGAC 59.263 40.000 11.48 0.08 37.80 3.18
2582 2694 6.310960 GCACACATATAACGTGAATTTGACA 58.689 36.000 11.48 0.00 37.80 3.58
2583 2695 6.966632 GCACACATATAACGTGAATTTGACAT 59.033 34.615 11.48 0.00 37.80 3.06
2584 2696 7.164171 GCACACATATAACGTGAATTTGACATC 59.836 37.037 11.48 0.00 37.80 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.975799 GCCGGCTGGTTTCGTGAA 60.976 61.111 22.15 0.00 37.67 3.18
65 96 1.067364 TGTTTGCAGCAGTCCATGTTG 59.933 47.619 0.00 0.00 42.62 3.33
158 193 4.499865 GGTGCTTTCTTTCCTGGAAGAAAC 60.500 45.833 20.42 17.93 46.37 2.78
229 272 3.181512 GGAGCTTCAGCAATCTTTTCTCG 60.182 47.826 0.75 0.00 45.16 4.04
322 371 7.201617 GGAGGTTAATTAATTGTCTTCTCCGTG 60.202 40.741 11.05 0.00 0.00 4.94
323 372 6.822170 GGAGGTTAATTAATTGTCTTCTCCGT 59.178 38.462 11.05 0.00 0.00 4.69
324 373 7.247929 GGAGGTTAATTAATTGTCTTCTCCG 57.752 40.000 11.05 0.00 0.00 4.63
440 491 1.403679 TGGCAGTTTCCTTGTGTTTCG 59.596 47.619 0.00 0.00 0.00 3.46
560 631 4.162320 CCAAGGTGTAGATTGGCTCTCTAA 59.838 45.833 0.00 0.00 39.58 2.10
675 748 5.428253 GAGTTAGCACTATGGGAATGTTGA 58.572 41.667 0.00 0.00 31.22 3.18
753 828 3.889815 AGCATATGAAGGCACAAGCTTA 58.110 40.909 6.97 0.00 41.70 3.09
764 839 3.818180 AGCTCTCCCAAAGCATATGAAG 58.182 45.455 6.97 0.00 42.35 3.02
1234 1330 2.665000 CTCACCACCATGGAGCGT 59.335 61.111 21.47 8.11 40.96 5.07
1252 1348 9.979270 CAGTTGATGAGAGATATTAACAACAAC 57.021 33.333 0.00 0.00 41.22 3.32
1440 1549 1.285023 CGAAGGTTGGTCGTCGACT 59.715 57.895 23.69 3.76 40.14 4.18
1606 1715 6.844696 TCAGACTTTGTCATACAAACAGAC 57.155 37.500 1.21 0.00 42.55 3.51
1692 1802 7.231317 TCCCTACCTAAATACGGTATACAAGTG 59.769 40.741 5.01 0.00 36.49 3.16
1736 1846 1.671379 GTTCTCCGGCAGACAACCC 60.671 63.158 0.00 0.00 0.00 4.11
1754 1864 7.584108 TGTGTGTGCTAGAAAAATAATGTCTG 58.416 34.615 0.00 0.00 0.00 3.51
1819 1931 5.978919 TCTGCTTTAACTTGCATTGTTTCAG 59.021 36.000 10.22 11.57 38.59 3.02
1828 1940 5.300539 TGGTAAACATCTGCTTTAACTTGCA 59.699 36.000 0.00 0.00 37.63 4.08
1829 1941 5.768317 TGGTAAACATCTGCTTTAACTTGC 58.232 37.500 0.00 0.00 0.00 4.01
1866 1978 1.587088 CGGCGCAAATGCAAGGATC 60.587 57.895 10.83 0.00 42.21 3.36
1871 1983 0.735471 TAATAGCGGCGCAAATGCAA 59.265 45.000 35.02 12.82 42.21 4.08
1981 2093 9.023962 GGCATATTTAGATGAAATAATGGTCCA 57.976 33.333 0.00 0.00 42.08 4.02
1982 2094 9.247861 AGGCATATTTAGATGAAATAATGGTCC 57.752 33.333 0.00 0.00 42.08 4.46
1984 2096 9.592196 ACAGGCATATTTAGATGAAATAATGGT 57.408 29.630 0.00 0.00 42.08 3.55
2000 2112 9.912634 GCATATGTAATTTTGTACAGGCATATT 57.087 29.630 4.29 0.00 37.41 1.28
2001 2113 9.300681 AGCATATGTAATTTTGTACAGGCATAT 57.699 29.630 4.29 3.55 37.41 1.78
2002 2114 8.690203 AGCATATGTAATTTTGTACAGGCATA 57.310 30.769 4.29 1.47 37.41 3.14
2003 2115 7.587037 AGCATATGTAATTTTGTACAGGCAT 57.413 32.000 4.29 0.00 37.41 4.40
2004 2116 7.773224 AGTAGCATATGTAATTTTGTACAGGCA 59.227 33.333 4.29 0.00 37.41 4.75
2005 2117 8.154649 AGTAGCATATGTAATTTTGTACAGGC 57.845 34.615 4.29 0.00 37.41 4.85
2023 2135 8.045507 CCATGGATGTTCTCATTATAGTAGCAT 58.954 37.037 5.56 0.00 34.06 3.79
2024 2136 7.235399 TCCATGGATGTTCTCATTATAGTAGCA 59.765 37.037 11.44 0.00 34.06 3.49
2025 2137 7.615403 TCCATGGATGTTCTCATTATAGTAGC 58.385 38.462 11.44 0.00 34.06 3.58
2028 2140 9.872684 ATTTTCCATGGATGTTCTCATTATAGT 57.127 29.630 17.06 0.00 34.06 2.12
2080 2192 9.495572 GCTAAAGCAAATATAGATTACTCACCT 57.504 33.333 0.00 0.00 41.59 4.00
2099 2211 6.857437 ATGGGGGATATAATTTGCTAAAGC 57.143 37.500 0.00 0.00 42.50 3.51
2104 2216 9.619842 AGAAAAATATGGGGGATATAATTTGCT 57.380 29.630 0.00 0.00 0.00 3.91
2139 2251 8.625651 TGTATTAACAGTGCAACATTTAAGTGT 58.374 29.630 0.00 0.00 41.43 3.55
2140 2252 9.624697 ATGTATTAACAGTGCAACATTTAAGTG 57.375 29.630 0.00 0.00 41.43 3.16
2165 2277 9.899226 GCACTTCTTTCTTTGTTGTCTTATTAT 57.101 29.630 0.00 0.00 0.00 1.28
2166 2278 8.349983 GGCACTTCTTTCTTTGTTGTCTTATTA 58.650 33.333 0.00 0.00 0.00 0.98
2167 2279 7.068716 AGGCACTTCTTTCTTTGTTGTCTTATT 59.931 33.333 0.00 0.00 27.25 1.40
2168 2280 6.547510 AGGCACTTCTTTCTTTGTTGTCTTAT 59.452 34.615 0.00 0.00 27.25 1.73
2169 2281 5.885912 AGGCACTTCTTTCTTTGTTGTCTTA 59.114 36.000 0.00 0.00 27.25 2.10
2170 2282 4.706962 AGGCACTTCTTTCTTTGTTGTCTT 59.293 37.500 0.00 0.00 27.25 3.01
2171 2283 4.273318 AGGCACTTCTTTCTTTGTTGTCT 58.727 39.130 0.00 0.00 27.25 3.41
2172 2284 4.096382 TGAGGCACTTCTTTCTTTGTTGTC 59.904 41.667 0.00 0.00 41.55 3.18
2173 2285 4.016444 TGAGGCACTTCTTTCTTTGTTGT 58.984 39.130 0.00 0.00 41.55 3.32
2174 2286 4.637483 TGAGGCACTTCTTTCTTTGTTG 57.363 40.909 0.00 0.00 41.55 3.33
2175 2287 5.859205 ATTGAGGCACTTCTTTCTTTGTT 57.141 34.783 0.00 0.00 41.55 2.83
2176 2288 6.491403 ACATATTGAGGCACTTCTTTCTTTGT 59.509 34.615 0.00 0.00 41.55 2.83
2177 2289 6.917533 ACATATTGAGGCACTTCTTTCTTTG 58.082 36.000 0.00 0.00 41.55 2.77
2178 2290 7.530426 AACATATTGAGGCACTTCTTTCTTT 57.470 32.000 0.00 0.00 41.55 2.52
2179 2291 7.530426 AAACATATTGAGGCACTTCTTTCTT 57.470 32.000 0.00 0.00 41.55 2.52
2180 2292 7.530426 AAAACATATTGAGGCACTTCTTTCT 57.470 32.000 0.00 0.00 41.55 2.52
2207 2319 9.254133 TGCATTTTCTCGAACAAATAATGAAAA 57.746 25.926 6.07 6.07 36.71 2.29
2208 2320 8.809159 TGCATTTTCTCGAACAAATAATGAAA 57.191 26.923 0.00 0.00 0.00 2.69
2209 2321 8.698854 GTTGCATTTTCTCGAACAAATAATGAA 58.301 29.630 0.00 0.00 0.00 2.57
2210 2322 7.328249 GGTTGCATTTTCTCGAACAAATAATGA 59.672 33.333 0.00 0.00 0.00 2.57
2211 2323 7.116090 TGGTTGCATTTTCTCGAACAAATAATG 59.884 33.333 0.00 0.00 0.00 1.90
2212 2324 7.151308 TGGTTGCATTTTCTCGAACAAATAAT 58.849 30.769 0.00 0.00 0.00 1.28
2213 2325 6.507900 TGGTTGCATTTTCTCGAACAAATAA 58.492 32.000 0.00 0.00 0.00 1.40
2214 2326 6.078202 TGGTTGCATTTTCTCGAACAAATA 57.922 33.333 0.00 0.00 0.00 1.40
2215 2327 4.942852 TGGTTGCATTTTCTCGAACAAAT 58.057 34.783 0.00 0.00 0.00 2.32
2216 2328 4.377839 TGGTTGCATTTTCTCGAACAAA 57.622 36.364 0.00 0.00 0.00 2.83
2217 2329 4.377839 TTGGTTGCATTTTCTCGAACAA 57.622 36.364 0.00 0.00 0.00 2.83
2218 2330 4.582701 ATTGGTTGCATTTTCTCGAACA 57.417 36.364 0.00 0.00 0.00 3.18
2219 2331 7.581011 AATTATTGGTTGCATTTTCTCGAAC 57.419 32.000 0.00 0.00 0.00 3.95
2252 2364 9.214957 CGCTAAGATATCAACCACCAATATTTA 57.785 33.333 5.32 0.00 0.00 1.40
2253 2365 7.719633 ACGCTAAGATATCAACCACCAATATTT 59.280 33.333 5.32 0.00 0.00 1.40
2254 2366 7.224297 ACGCTAAGATATCAACCACCAATATT 58.776 34.615 5.32 0.00 0.00 1.28
2255 2367 6.769512 ACGCTAAGATATCAACCACCAATAT 58.230 36.000 5.32 0.00 0.00 1.28
2256 2368 6.169557 ACGCTAAGATATCAACCACCAATA 57.830 37.500 5.32 0.00 0.00 1.90
2257 2369 5.036117 ACGCTAAGATATCAACCACCAAT 57.964 39.130 5.32 0.00 0.00 3.16
2258 2370 4.481368 ACGCTAAGATATCAACCACCAA 57.519 40.909 5.32 0.00 0.00 3.67
2259 2371 5.069914 ACATACGCTAAGATATCAACCACCA 59.930 40.000 5.32 0.00 0.00 4.17
2260 2372 5.539048 ACATACGCTAAGATATCAACCACC 58.461 41.667 5.32 0.00 0.00 4.61
2261 2373 5.634020 GGACATACGCTAAGATATCAACCAC 59.366 44.000 5.32 0.00 0.00 4.16
2262 2374 5.538813 AGGACATACGCTAAGATATCAACCA 59.461 40.000 5.32 0.00 0.00 3.67
2263 2375 6.026947 AGGACATACGCTAAGATATCAACC 57.973 41.667 5.32 0.00 0.00 3.77
2264 2376 7.948278 AAAGGACATACGCTAAGATATCAAC 57.052 36.000 5.32 0.00 0.00 3.18
2265 2377 8.201464 TGAAAAGGACATACGCTAAGATATCAA 58.799 33.333 5.32 0.00 0.00 2.57
2266 2378 7.652105 GTGAAAAGGACATACGCTAAGATATCA 59.348 37.037 5.32 0.00 0.00 2.15
2267 2379 7.868415 AGTGAAAAGGACATACGCTAAGATATC 59.132 37.037 0.00 0.00 0.00 1.63
2268 2380 7.727181 AGTGAAAAGGACATACGCTAAGATAT 58.273 34.615 0.00 0.00 0.00 1.63
2269 2381 7.108841 AGTGAAAAGGACATACGCTAAGATA 57.891 36.000 0.00 0.00 0.00 1.98
2270 2382 5.978814 AGTGAAAAGGACATACGCTAAGAT 58.021 37.500 0.00 0.00 0.00 2.40
2271 2383 5.401531 AGTGAAAAGGACATACGCTAAGA 57.598 39.130 0.00 0.00 0.00 2.10
2272 2384 6.331061 AGTAGTGAAAAGGACATACGCTAAG 58.669 40.000 0.00 0.00 0.00 2.18
2273 2385 6.276832 AGTAGTGAAAAGGACATACGCTAA 57.723 37.500 0.00 0.00 0.00 3.09
2274 2386 5.909621 AGTAGTGAAAAGGACATACGCTA 57.090 39.130 0.00 0.00 0.00 4.26
2275 2387 4.803098 AGTAGTGAAAAGGACATACGCT 57.197 40.909 0.00 0.00 0.00 5.07
2276 2388 5.287992 GTGTAGTAGTGAAAAGGACATACGC 59.712 44.000 0.00 0.00 0.00 4.42
2277 2389 6.384224 TGTGTAGTAGTGAAAAGGACATACG 58.616 40.000 0.00 0.00 0.00 3.06
2278 2390 8.597662 TTTGTGTAGTAGTGAAAAGGACATAC 57.402 34.615 0.00 0.00 0.00 2.39
2279 2391 9.268268 CTTTTGTGTAGTAGTGAAAAGGACATA 57.732 33.333 0.00 0.00 32.41 2.29
2280 2392 7.255139 GCTTTTGTGTAGTAGTGAAAAGGACAT 60.255 37.037 0.00 0.00 35.23 3.06
2281 2393 6.037830 GCTTTTGTGTAGTAGTGAAAAGGACA 59.962 38.462 0.00 0.00 35.23 4.02
2282 2394 6.427974 GCTTTTGTGTAGTAGTGAAAAGGAC 58.572 40.000 0.00 0.00 35.23 3.85
2283 2395 5.529800 GGCTTTTGTGTAGTAGTGAAAAGGA 59.470 40.000 0.00 0.00 35.23 3.36
2284 2396 5.531287 AGGCTTTTGTGTAGTAGTGAAAAGG 59.469 40.000 0.00 0.00 35.23 3.11
2285 2397 6.619801 AGGCTTTTGTGTAGTAGTGAAAAG 57.380 37.500 0.00 0.00 36.92 2.27
2286 2398 8.685838 AATAGGCTTTTGTGTAGTAGTGAAAA 57.314 30.769 0.00 0.00 0.00 2.29
2287 2399 7.117236 CGAATAGGCTTTTGTGTAGTAGTGAAA 59.883 37.037 0.00 0.00 0.00 2.69
2288 2400 6.588756 CGAATAGGCTTTTGTGTAGTAGTGAA 59.411 38.462 0.00 0.00 0.00 3.18
2289 2401 6.071784 TCGAATAGGCTTTTGTGTAGTAGTGA 60.072 38.462 0.00 0.00 0.00 3.41
2290 2402 6.097356 TCGAATAGGCTTTTGTGTAGTAGTG 58.903 40.000 0.00 0.00 0.00 2.74
2291 2403 6.276832 TCGAATAGGCTTTTGTGTAGTAGT 57.723 37.500 0.00 0.00 0.00 2.73
2292 2404 5.749109 CCTCGAATAGGCTTTTGTGTAGTAG 59.251 44.000 0.00 0.00 38.97 2.57
2293 2405 5.657474 CCTCGAATAGGCTTTTGTGTAGTA 58.343 41.667 0.00 0.00 38.97 1.82
2294 2406 4.504858 CCTCGAATAGGCTTTTGTGTAGT 58.495 43.478 0.00 0.00 38.97 2.73
2306 2418 3.234730 AGGCCCGCCTCGAATAGG 61.235 66.667 1.26 0.00 44.43 2.57
2307 2419 2.028125 TTCAGGCCCGCCTCGAATAG 62.028 60.000 4.92 0.00 46.28 1.73
2308 2420 1.407656 ATTCAGGCCCGCCTCGAATA 61.408 55.000 21.64 6.75 46.28 1.75
2309 2421 2.270874 AATTCAGGCCCGCCTCGAAT 62.271 55.000 19.26 19.26 46.28 3.34
2310 2422 1.618876 TAATTCAGGCCCGCCTCGAA 61.619 55.000 17.27 17.27 46.28 3.71
2311 2423 2.028125 CTAATTCAGGCCCGCCTCGA 62.028 60.000 4.92 4.60 46.28 4.04
2312 2424 1.595382 CTAATTCAGGCCCGCCTCG 60.595 63.158 4.92 2.14 46.28 4.63
2313 2425 1.894282 GCTAATTCAGGCCCGCCTC 60.894 63.158 4.92 0.00 46.28 4.70
2315 2427 1.037579 AAAGCTAATTCAGGCCCGCC 61.038 55.000 0.00 0.00 0.00 6.13
2316 2428 0.382158 GAAAGCTAATTCAGGCCCGC 59.618 55.000 0.00 0.00 0.00 6.13
2317 2429 1.025041 GGAAAGCTAATTCAGGCCCG 58.975 55.000 0.00 0.00 0.00 6.13
2318 2430 2.143876 TGGAAAGCTAATTCAGGCCC 57.856 50.000 0.00 0.00 0.00 5.80
2319 2431 2.363359 CCATGGAAAGCTAATTCAGGCC 59.637 50.000 5.56 0.00 0.00 5.19
2320 2432 3.026694 ACCATGGAAAGCTAATTCAGGC 58.973 45.455 21.47 0.00 0.00 4.85
2321 2433 4.272489 TCACCATGGAAAGCTAATTCAGG 58.728 43.478 21.47 2.28 0.00 3.86
2322 2434 6.461110 AATCACCATGGAAAGCTAATTCAG 57.539 37.500 21.47 0.00 0.00 3.02
2323 2435 6.855763 AAATCACCATGGAAAGCTAATTCA 57.144 33.333 21.47 0.00 0.00 2.57
2324 2436 8.037166 AGAAAAATCACCATGGAAAGCTAATTC 58.963 33.333 21.47 12.27 0.00 2.17
2325 2437 7.910584 AGAAAAATCACCATGGAAAGCTAATT 58.089 30.769 21.47 3.48 0.00 1.40
2326 2438 7.486407 AGAAAAATCACCATGGAAAGCTAAT 57.514 32.000 21.47 0.00 0.00 1.73
2327 2439 6.916360 AGAAAAATCACCATGGAAAGCTAA 57.084 33.333 21.47 0.00 0.00 3.09
2328 2440 6.377146 GGTAGAAAAATCACCATGGAAAGCTA 59.623 38.462 21.47 5.88 32.32 3.32
2329 2441 5.185828 GGTAGAAAAATCACCATGGAAAGCT 59.814 40.000 21.47 6.83 32.32 3.74
2330 2442 5.185828 AGGTAGAAAAATCACCATGGAAAGC 59.814 40.000 21.47 0.00 34.62 3.51
2331 2443 6.624423 CAGGTAGAAAAATCACCATGGAAAG 58.376 40.000 21.47 8.04 34.62 2.62
2332 2444 5.047377 GCAGGTAGAAAAATCACCATGGAAA 60.047 40.000 21.47 5.96 34.62 3.13
2333 2445 4.462483 GCAGGTAGAAAAATCACCATGGAA 59.538 41.667 21.47 6.38 34.62 3.53
2334 2446 4.016444 GCAGGTAGAAAAATCACCATGGA 58.984 43.478 21.47 0.00 34.62 3.41
2335 2447 3.131046 GGCAGGTAGAAAAATCACCATGG 59.869 47.826 11.19 11.19 34.62 3.66
2336 2448 3.181497 CGGCAGGTAGAAAAATCACCATG 60.181 47.826 0.00 0.00 34.62 3.66
2337 2449 3.016736 CGGCAGGTAGAAAAATCACCAT 58.983 45.455 0.00 0.00 34.62 3.55
2338 2450 2.432444 CGGCAGGTAGAAAAATCACCA 58.568 47.619 0.00 0.00 34.62 4.17
2339 2451 1.132453 GCGGCAGGTAGAAAAATCACC 59.868 52.381 0.00 0.00 0.00 4.02
2340 2452 2.084546 AGCGGCAGGTAGAAAAATCAC 58.915 47.619 1.45 0.00 0.00 3.06
2341 2453 2.027192 AGAGCGGCAGGTAGAAAAATCA 60.027 45.455 1.45 0.00 0.00 2.57
2342 2454 2.633488 AGAGCGGCAGGTAGAAAAATC 58.367 47.619 1.45 0.00 0.00 2.17
2343 2455 2.749621 CAAGAGCGGCAGGTAGAAAAAT 59.250 45.455 1.45 0.00 0.00 1.82
2344 2456 2.151202 CAAGAGCGGCAGGTAGAAAAA 58.849 47.619 1.45 0.00 0.00 1.94
2345 2457 1.610624 CCAAGAGCGGCAGGTAGAAAA 60.611 52.381 1.45 0.00 0.00 2.29
2346 2458 0.036388 CCAAGAGCGGCAGGTAGAAA 60.036 55.000 1.45 0.00 0.00 2.52
2347 2459 1.596934 CCAAGAGCGGCAGGTAGAA 59.403 57.895 1.45 0.00 0.00 2.10
2348 2460 3.298958 CCAAGAGCGGCAGGTAGA 58.701 61.111 1.45 0.00 0.00 2.59
2358 2470 1.936547 CTATTTGAGACCGCCAAGAGC 59.063 52.381 0.00 0.00 38.52 4.09
2359 2471 3.526931 TCTATTTGAGACCGCCAAGAG 57.473 47.619 0.00 0.00 0.00 2.85
2360 2472 4.202223 GGTATCTATTTGAGACCGCCAAGA 60.202 45.833 0.00 0.00 45.64 3.02
2361 2473 4.058817 GGTATCTATTTGAGACCGCCAAG 58.941 47.826 0.00 0.00 45.64 3.61
2362 2474 4.067972 GGTATCTATTTGAGACCGCCAA 57.932 45.455 0.00 0.00 45.64 4.52
2363 2475 3.746045 GGTATCTATTTGAGACCGCCA 57.254 47.619 0.00 0.00 45.64 5.69
2383 2495 2.554032 CTGGGCACACAACCTAAAAGAG 59.446 50.000 0.00 0.00 0.00 2.85
2384 2496 2.092103 ACTGGGCACACAACCTAAAAGA 60.092 45.455 0.00 0.00 0.00 2.52
2385 2497 2.306847 ACTGGGCACACAACCTAAAAG 58.693 47.619 0.00 0.00 0.00 2.27
2386 2498 2.445682 ACTGGGCACACAACCTAAAA 57.554 45.000 0.00 0.00 0.00 1.52
2387 2499 3.560453 GGATACTGGGCACACAACCTAAA 60.560 47.826 0.00 0.00 0.00 1.85
2388 2500 2.026636 GGATACTGGGCACACAACCTAA 60.027 50.000 0.00 0.00 0.00 2.69
2389 2501 1.557832 GGATACTGGGCACACAACCTA 59.442 52.381 0.00 0.00 0.00 3.08
2390 2502 0.328258 GGATACTGGGCACACAACCT 59.672 55.000 0.00 0.00 0.00 3.50
2391 2503 0.037590 TGGATACTGGGCACACAACC 59.962 55.000 0.00 0.00 37.61 3.77
2392 2504 1.165270 GTGGATACTGGGCACACAAC 58.835 55.000 0.00 0.00 37.61 3.32
2393 2505 0.037590 GGTGGATACTGGGCACACAA 59.962 55.000 0.00 0.00 33.91 3.33
2394 2506 0.840288 AGGTGGATACTGGGCACACA 60.840 55.000 0.00 0.00 33.91 3.72
2395 2507 0.328258 AAGGTGGATACTGGGCACAC 59.672 55.000 0.00 0.00 37.61 3.82
2396 2508 0.327924 CAAGGTGGATACTGGGCACA 59.672 55.000 0.00 0.00 37.61 4.57
2397 2509 0.394352 CCAAGGTGGATACTGGGCAC 60.394 60.000 0.00 0.00 40.96 5.01
2398 2510 0.844661 ACCAAGGTGGATACTGGGCA 60.845 55.000 0.18 0.00 40.96 5.36
2399 2511 0.107165 GACCAAGGTGGATACTGGGC 60.107 60.000 0.18 0.00 40.96 5.36
2400 2512 1.210478 CAGACCAAGGTGGATACTGGG 59.790 57.143 0.18 0.00 40.96 4.45
2401 2513 2.169352 CTCAGACCAAGGTGGATACTGG 59.831 54.545 0.18 0.00 40.96 4.00
2402 2514 3.099905 TCTCAGACCAAGGTGGATACTG 58.900 50.000 0.18 7.68 40.96 2.74
2403 2515 3.100671 GTCTCAGACCAAGGTGGATACT 58.899 50.000 0.18 0.00 40.96 2.12
2404 2516 3.528597 GTCTCAGACCAAGGTGGATAC 57.471 52.381 0.18 0.00 40.96 2.24
2416 2528 2.006888 CGTCTCAGAGAGGTCTCAGAC 58.993 57.143 11.42 13.72 45.21 3.51
2417 2529 1.626321 ACGTCTCAGAGAGGTCTCAGA 59.374 52.381 18.32 5.91 45.21 3.27
2418 2530 1.737236 CACGTCTCAGAGAGGTCTCAG 59.263 57.143 20.68 8.08 40.92 3.35
2419 2531 1.072489 ACACGTCTCAGAGAGGTCTCA 59.928 52.381 20.68 0.00 40.92 3.27
2420 2532 1.816074 ACACGTCTCAGAGAGGTCTC 58.184 55.000 20.68 0.00 40.92 3.36
2421 2533 2.279935 AACACGTCTCAGAGAGGTCT 57.720 50.000 20.68 8.80 40.92 3.85
2422 2534 3.372660 AAAACACGTCTCAGAGAGGTC 57.627 47.619 20.68 0.00 40.92 3.85
2423 2535 3.821421 AAAAACACGTCTCAGAGAGGT 57.179 42.857 18.32 18.32 43.33 3.85
2440 2552 3.074675 TCCAATAGGGCGTGCTAAAAA 57.925 42.857 0.00 0.00 36.21 1.94
2441 2553 2.791347 TCCAATAGGGCGTGCTAAAA 57.209 45.000 0.00 0.00 36.21 1.52
2442 2554 2.791347 TTCCAATAGGGCGTGCTAAA 57.209 45.000 0.00 0.00 36.21 1.85
2443 2555 2.750712 GTTTTCCAATAGGGCGTGCTAA 59.249 45.455 0.00 0.00 36.21 3.09
2444 2556 2.361789 GTTTTCCAATAGGGCGTGCTA 58.638 47.619 0.00 0.00 36.21 3.49
2445 2557 1.173913 GTTTTCCAATAGGGCGTGCT 58.826 50.000 0.00 0.00 36.21 4.40
2446 2558 0.179174 CGTTTTCCAATAGGGCGTGC 60.179 55.000 0.00 0.00 36.21 5.34
2447 2559 1.135803 CACGTTTTCCAATAGGGCGTG 60.136 52.381 0.00 0.00 39.06 5.34
2448 2560 1.161843 CACGTTTTCCAATAGGGCGT 58.838 50.000 0.00 0.00 36.21 5.68
2449 2561 1.161843 ACACGTTTTCCAATAGGGCG 58.838 50.000 0.00 0.00 36.21 6.13
2450 2562 2.554893 TGAACACGTTTTCCAATAGGGC 59.445 45.455 11.70 0.00 36.21 5.19
2451 2563 4.142469 GGATGAACACGTTTTCCAATAGGG 60.142 45.833 11.70 0.00 34.83 3.53
2452 2564 4.457603 TGGATGAACACGTTTTCCAATAGG 59.542 41.667 11.70 0.00 34.41 2.57
2453 2565 5.621197 TGGATGAACACGTTTTCCAATAG 57.379 39.130 11.70 0.00 34.41 1.73
2454 2566 5.707764 TCATGGATGAACACGTTTTCCAATA 59.292 36.000 11.70 7.51 38.10 1.90
2455 2567 4.522405 TCATGGATGAACACGTTTTCCAAT 59.478 37.500 11.70 0.00 38.10 3.16
2456 2568 3.885901 TCATGGATGAACACGTTTTCCAA 59.114 39.130 11.70 0.00 38.10 3.53
2457 2569 3.252215 GTCATGGATGAACACGTTTTCCA 59.748 43.478 11.70 14.31 38.75 3.53
2458 2570 3.666902 CGTCATGGATGAACACGTTTTCC 60.667 47.826 11.70 0.00 38.75 3.13
2459 2571 3.059188 ACGTCATGGATGAACACGTTTTC 60.059 43.478 7.50 7.50 35.96 2.29
2460 2572 2.875933 ACGTCATGGATGAACACGTTTT 59.124 40.909 1.12 0.00 35.96 2.43
2461 2573 2.478894 GACGTCATGGATGAACACGTTT 59.521 45.455 11.55 0.00 38.37 3.60
2462 2574 2.066262 GACGTCATGGATGAACACGTT 58.934 47.619 11.55 0.00 38.37 3.99
2463 2575 1.272490 AGACGTCATGGATGAACACGT 59.728 47.619 19.50 6.24 40.10 4.49
2464 2576 1.996292 AGACGTCATGGATGAACACG 58.004 50.000 19.50 0.00 38.75 4.49
2465 2577 3.589988 AGAAGACGTCATGGATGAACAC 58.410 45.455 19.50 0.00 38.75 3.32
2466 2578 3.511540 AGAGAAGACGTCATGGATGAACA 59.488 43.478 19.50 0.00 38.75 3.18
2467 2579 4.116747 AGAGAAGACGTCATGGATGAAC 57.883 45.455 19.50 0.00 38.75 3.18
2468 2580 5.737349 GCATAGAGAAGACGTCATGGATGAA 60.737 44.000 19.50 0.00 38.75 2.57
2469 2581 4.261783 GCATAGAGAAGACGTCATGGATGA 60.262 45.833 19.50 0.00 0.00 2.92
2470 2582 3.986572 GCATAGAGAAGACGTCATGGATG 59.013 47.826 19.50 13.32 0.00 3.51
2471 2583 3.304996 CGCATAGAGAAGACGTCATGGAT 60.305 47.826 19.50 3.06 0.00 3.41
2472 2584 2.033424 CGCATAGAGAAGACGTCATGGA 59.967 50.000 19.50 0.00 0.00 3.41
2473 2585 2.389059 CGCATAGAGAAGACGTCATGG 58.611 52.381 19.50 2.47 0.00 3.66
2474 2586 2.389059 CCGCATAGAGAAGACGTCATG 58.611 52.381 19.50 12.26 0.00 3.07
2475 2587 1.338337 CCCGCATAGAGAAGACGTCAT 59.662 52.381 19.50 5.41 0.00 3.06
2476 2588 0.738975 CCCGCATAGAGAAGACGTCA 59.261 55.000 19.50 0.00 0.00 4.35
2477 2589 0.030908 CCCCGCATAGAGAAGACGTC 59.969 60.000 7.70 7.70 0.00 4.34
2478 2590 2.017559 GCCCCGCATAGAGAAGACGT 62.018 60.000 0.00 0.00 0.00 4.34
2479 2591 1.300233 GCCCCGCATAGAGAAGACG 60.300 63.158 0.00 0.00 0.00 4.18
2480 2592 0.178068 TTGCCCCGCATAGAGAAGAC 59.822 55.000 0.00 0.00 38.76 3.01
2481 2593 0.908910 TTTGCCCCGCATAGAGAAGA 59.091 50.000 0.00 0.00 38.76 2.87
2482 2594 1.017387 GTTTGCCCCGCATAGAGAAG 58.983 55.000 0.00 0.00 38.76 2.85
2483 2595 0.618458 AGTTTGCCCCGCATAGAGAA 59.382 50.000 0.00 0.00 38.76 2.87
2484 2596 0.178068 GAGTTTGCCCCGCATAGAGA 59.822 55.000 0.00 0.00 38.76 3.10
2485 2597 1.154205 CGAGTTTGCCCCGCATAGAG 61.154 60.000 0.00 0.00 38.76 2.43
2486 2598 1.153449 CGAGTTTGCCCCGCATAGA 60.153 57.895 0.00 0.00 38.76 1.98
2487 2599 0.742990 TTCGAGTTTGCCCCGCATAG 60.743 55.000 0.00 0.00 38.76 2.23
2488 2600 0.107410 ATTCGAGTTTGCCCCGCATA 60.107 50.000 0.00 0.00 38.76 3.14
2489 2601 1.378514 ATTCGAGTTTGCCCCGCAT 60.379 52.632 0.00 0.00 38.76 4.73
2490 2602 2.033448 ATTCGAGTTTGCCCCGCA 59.967 55.556 0.00 0.00 36.47 5.69
2491 2603 2.485122 CATTCGAGTTTGCCCCGC 59.515 61.111 0.00 0.00 0.00 6.13
2492 2604 2.406616 CCCATTCGAGTTTGCCCCG 61.407 63.158 0.00 0.00 0.00 5.73
2493 2605 2.710902 GCCCATTCGAGTTTGCCCC 61.711 63.158 0.00 0.00 0.00 5.80
2494 2606 1.678970 AGCCCATTCGAGTTTGCCC 60.679 57.895 0.00 0.00 0.00 5.36
2495 2607 0.960364 TCAGCCCATTCGAGTTTGCC 60.960 55.000 0.00 0.00 0.00 4.52
2496 2608 0.881118 TTCAGCCCATTCGAGTTTGC 59.119 50.000 0.00 0.00 0.00 3.68
2497 2609 3.855689 ATTTCAGCCCATTCGAGTTTG 57.144 42.857 0.00 0.00 0.00 2.93
2498 2610 4.396166 CAGTATTTCAGCCCATTCGAGTTT 59.604 41.667 0.00 0.00 0.00 2.66
2499 2611 3.941483 CAGTATTTCAGCCCATTCGAGTT 59.059 43.478 0.00 0.00 0.00 3.01
2500 2612 3.535561 CAGTATTTCAGCCCATTCGAGT 58.464 45.455 0.00 0.00 0.00 4.18
2501 2613 2.874701 CCAGTATTTCAGCCCATTCGAG 59.125 50.000 0.00 0.00 0.00 4.04
2502 2614 2.238646 ACCAGTATTTCAGCCCATTCGA 59.761 45.455 0.00 0.00 0.00 3.71
2503 2615 2.355756 CACCAGTATTTCAGCCCATTCG 59.644 50.000 0.00 0.00 0.00 3.34
2504 2616 2.689983 CCACCAGTATTTCAGCCCATTC 59.310 50.000 0.00 0.00 0.00 2.67
2505 2617 2.311542 TCCACCAGTATTTCAGCCCATT 59.688 45.455 0.00 0.00 0.00 3.16
2506 2618 1.922447 TCCACCAGTATTTCAGCCCAT 59.078 47.619 0.00 0.00 0.00 4.00
2507 2619 1.281867 CTCCACCAGTATTTCAGCCCA 59.718 52.381 0.00 0.00 0.00 5.36
2508 2620 2.019156 GCTCCACCAGTATTTCAGCCC 61.019 57.143 0.00 0.00 0.00 5.19
2509 2621 1.383523 GCTCCACCAGTATTTCAGCC 58.616 55.000 0.00 0.00 0.00 4.85
2510 2622 1.009829 CGCTCCACCAGTATTTCAGC 58.990 55.000 0.00 0.00 0.00 4.26
2511 2623 2.672961 TCGCTCCACCAGTATTTCAG 57.327 50.000 0.00 0.00 0.00 3.02
2512 2624 2.614481 GGTTCGCTCCACCAGTATTTCA 60.614 50.000 0.00 0.00 34.04 2.69
2513 2625 2.007608 GGTTCGCTCCACCAGTATTTC 58.992 52.381 0.00 0.00 34.04 2.17
2514 2626 1.628846 AGGTTCGCTCCACCAGTATTT 59.371 47.619 0.00 0.00 36.67 1.40
2515 2627 1.276622 AGGTTCGCTCCACCAGTATT 58.723 50.000 0.00 0.00 36.67 1.89
2516 2628 1.066143 CAAGGTTCGCTCCACCAGTAT 60.066 52.381 0.00 0.00 36.67 2.12
2517 2629 0.320374 CAAGGTTCGCTCCACCAGTA 59.680 55.000 0.00 0.00 36.67 2.74
2518 2630 1.071471 CAAGGTTCGCTCCACCAGT 59.929 57.895 0.00 0.00 36.67 4.00
2519 2631 2.328099 GCAAGGTTCGCTCCACCAG 61.328 63.158 0.00 0.00 36.67 4.00
2520 2632 2.281484 GCAAGGTTCGCTCCACCA 60.281 61.111 0.00 0.00 36.67 4.17
2521 2633 2.032681 AGCAAGGTTCGCTCCACC 59.967 61.111 0.00 0.00 33.35 4.61
2526 2638 1.230324 GACAAAGAGCAAGGTTCGCT 58.770 50.000 0.00 0.00 44.10 4.93
2527 2639 0.110644 CGACAAAGAGCAAGGTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
2528 2640 1.192534 GACGACAAAGAGCAAGGTTCG 59.807 52.381 0.00 0.00 0.00 3.95
2529 2641 2.210116 TGACGACAAAGAGCAAGGTTC 58.790 47.619 0.00 0.00 0.00 3.62
2530 2642 2.325583 TGACGACAAAGAGCAAGGTT 57.674 45.000 0.00 0.00 0.00 3.50
2531 2643 2.550830 ATGACGACAAAGAGCAAGGT 57.449 45.000 0.00 0.00 0.00 3.50
2532 2644 3.557595 GGATATGACGACAAAGAGCAAGG 59.442 47.826 0.00 0.00 0.00 3.61
2533 2645 4.269603 CAGGATATGACGACAAAGAGCAAG 59.730 45.833 0.00 0.00 0.00 4.01
2534 2646 4.183865 CAGGATATGACGACAAAGAGCAA 58.816 43.478 0.00 0.00 0.00 3.91
2535 2647 3.430790 CCAGGATATGACGACAAAGAGCA 60.431 47.826 0.00 0.00 0.00 4.26
2536 2648 3.126831 CCAGGATATGACGACAAAGAGC 58.873 50.000 0.00 0.00 0.00 4.09
2537 2649 3.722147 CCCAGGATATGACGACAAAGAG 58.278 50.000 0.00 0.00 0.00 2.85
2538 2650 2.158957 GCCCAGGATATGACGACAAAGA 60.159 50.000 0.00 0.00 0.00 2.52
2539 2651 2.213499 GCCCAGGATATGACGACAAAG 58.787 52.381 0.00 0.00 0.00 2.77
2540 2652 1.557371 TGCCCAGGATATGACGACAAA 59.443 47.619 0.00 0.00 0.00 2.83
2541 2653 1.134521 GTGCCCAGGATATGACGACAA 60.135 52.381 0.00 0.00 0.00 3.18
2542 2654 0.464036 GTGCCCAGGATATGACGACA 59.536 55.000 0.00 0.00 0.00 4.35
2543 2655 0.464036 TGTGCCCAGGATATGACGAC 59.536 55.000 0.00 0.00 0.00 4.34
2544 2656 0.464036 GTGTGCCCAGGATATGACGA 59.536 55.000 0.00 0.00 0.00 4.20
2545 2657 0.177836 TGTGTGCCCAGGATATGACG 59.822 55.000 0.00 0.00 0.00 4.35
2546 2658 2.645838 ATGTGTGCCCAGGATATGAC 57.354 50.000 0.00 0.00 0.00 3.06
2547 2659 5.568624 CGTTATATGTGTGCCCAGGATATGA 60.569 44.000 0.00 0.00 0.00 2.15
2548 2660 4.631377 CGTTATATGTGTGCCCAGGATATG 59.369 45.833 0.00 0.00 0.00 1.78
2549 2661 4.286032 ACGTTATATGTGTGCCCAGGATAT 59.714 41.667 0.00 0.00 0.00 1.63
2550 2662 3.644265 ACGTTATATGTGTGCCCAGGATA 59.356 43.478 0.00 0.00 0.00 2.59
2551 2663 2.438021 ACGTTATATGTGTGCCCAGGAT 59.562 45.455 0.00 0.00 0.00 3.24
2552 2664 1.834896 ACGTTATATGTGTGCCCAGGA 59.165 47.619 0.00 0.00 0.00 3.86
2553 2665 1.939934 CACGTTATATGTGTGCCCAGG 59.060 52.381 0.00 0.00 30.72 4.45
2554 2666 2.899976 TCACGTTATATGTGTGCCCAG 58.100 47.619 0.00 0.00 36.53 4.45
2555 2667 3.336138 TTCACGTTATATGTGTGCCCA 57.664 42.857 0.00 0.00 36.53 5.36
2556 2668 4.893424 AATTCACGTTATATGTGTGCCC 57.107 40.909 0.00 0.00 36.53 5.36
2557 2669 5.737290 GTCAAATTCACGTTATATGTGTGCC 59.263 40.000 0.00 0.00 36.53 5.01
2558 2670 6.310960 TGTCAAATTCACGTTATATGTGTGC 58.689 36.000 0.00 0.00 36.53 4.57
2559 2671 8.533737 GATGTCAAATTCACGTTATATGTGTG 57.466 34.615 0.00 0.74 36.53 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.