Multiple sequence alignment - TraesCS5B01G291800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G291800 chr5B 100.000 3841 0 0 1 3841 477422133 477425973 0.000000e+00 7094
1 TraesCS5B01G291800 chr5D 86.256 2401 222 67 196 2535 397026474 397028827 0.000000e+00 2507
2 TraesCS5B01G291800 chr5D 89.744 585 60 0 3256 3840 397072269 397072853 0.000000e+00 749
3 TraesCS5B01G291800 chr5D 80.322 559 76 22 2545 3085 397029005 397029547 3.600000e-105 392
4 TraesCS5B01G291800 chr5A 86.732 1025 93 28 601 1597 502580577 502581586 0.000000e+00 1099
5 TraesCS5B01G291800 chr5A 88.357 773 76 5 3081 3840 502596986 502597757 0.000000e+00 917
6 TraesCS5B01G291800 chr5A 79.734 903 104 42 1640 2495 502581596 502582466 7.150000e-162 580
7 TraesCS5B01G291800 chr5A 81.004 558 77 18 2546 3085 502582692 502583238 2.130000e-112 416
8 TraesCS5B01G291800 chr5A 86.312 263 28 6 289 549 502580363 502580619 2.920000e-71 279
9 TraesCS5B01G291800 chr5A 89.032 155 11 4 146 299 502555764 502555913 1.820000e-43 187
10 TraesCS5B01G291800 chr5A 95.098 102 2 2 706 805 702637731 702637631 1.430000e-34 158
11 TraesCS5B01G291800 chr4D 95.192 104 0 5 711 810 506979842 506979740 3.970000e-35 159
12 TraesCS5B01G291800 chr4D 96.842 95 1 2 713 807 482238094 482238186 1.430000e-34 158
13 TraesCS5B01G291800 chr4B 95.098 102 3 2 707 808 612029764 612029863 3.970000e-35 159
14 TraesCS5B01G291800 chr2D 96.000 100 0 2 709 805 371161184 371161086 3.970000e-35 159
15 TraesCS5B01G291800 chr1A 97.802 91 0 2 711 799 508639727 508639817 5.140000e-34 156
16 TraesCS5B01G291800 chr1B 95.000 100 1 4 711 808 555636601 555636698 1.850000e-33 154
17 TraesCS5B01G291800 chr7A 84.106 151 17 5 1 147 634696561 634696708 5.170000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G291800 chr5B 477422133 477425973 3840 False 7094.0 7094 100.0000 1 3841 1 chr5B.!!$F1 3840
1 TraesCS5B01G291800 chr5D 397026474 397029547 3073 False 1449.5 2507 83.2890 196 3085 2 chr5D.!!$F2 2889
2 TraesCS5B01G291800 chr5D 397072269 397072853 584 False 749.0 749 89.7440 3256 3840 1 chr5D.!!$F1 584
3 TraesCS5B01G291800 chr5A 502596986 502597757 771 False 917.0 917 88.3570 3081 3840 1 chr5A.!!$F2 759
4 TraesCS5B01G291800 chr5A 502580363 502583238 2875 False 593.5 1099 83.4455 289 3085 4 chr5A.!!$F3 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 833 0.250166 GTTGGCTAGTCGTGTGGGTT 60.250 55.0 0.00 0.0 0.00 4.11 F
1482 1530 0.330604 ATGATGACTGCTGCCTTGGT 59.669 50.0 0.00 0.0 0.00 3.67 F
1694 1743 0.532573 CTCGAGCCAGCTCTTTGGTA 59.467 55.0 17.06 0.0 40.49 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2358 0.107081 TGGGTGGACACGTAACAAGG 59.893 55.0 0.00 0.00 0.00 3.61 R
2373 2455 0.178978 TTTGCATACCACACTGGCCA 60.179 50.0 4.71 4.71 42.67 5.36 R
3240 3539 0.178992 TTTCCCTGCTTGGTGGTCAG 60.179 55.0 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.338937 AGTGAATACTGTAGAAACGAATCCC 58.661 40.000 0.00 0.00 35.34 3.85
34 35 6.154706 AGTGAATACTGTAGAAACGAATCCCT 59.845 38.462 0.00 0.00 35.34 4.20
35 36 6.817140 GTGAATACTGTAGAAACGAATCCCTT 59.183 38.462 0.00 0.00 0.00 3.95
36 37 7.010275 GTGAATACTGTAGAAACGAATCCCTTC 59.990 40.741 0.00 0.00 0.00 3.46
37 38 4.884668 ACTGTAGAAACGAATCCCTTCA 57.115 40.909 0.00 0.00 0.00 3.02
38 39 4.566987 ACTGTAGAAACGAATCCCTTCAC 58.433 43.478 0.00 0.00 0.00 3.18
39 40 4.283722 ACTGTAGAAACGAATCCCTTCACT 59.716 41.667 0.00 0.00 0.00 3.41
40 41 5.221661 ACTGTAGAAACGAATCCCTTCACTT 60.222 40.000 0.00 0.00 0.00 3.16
41 42 5.617252 TGTAGAAACGAATCCCTTCACTTT 58.383 37.500 0.00 0.00 0.00 2.66
42 43 6.761312 TGTAGAAACGAATCCCTTCACTTTA 58.239 36.000 0.00 0.00 0.00 1.85
43 44 6.872020 TGTAGAAACGAATCCCTTCACTTTAG 59.128 38.462 0.00 0.00 0.00 1.85
44 45 6.110411 AGAAACGAATCCCTTCACTTTAGA 57.890 37.500 0.00 0.00 0.00 2.10
45 46 5.932883 AGAAACGAATCCCTTCACTTTAGAC 59.067 40.000 0.00 0.00 0.00 2.59
46 47 4.203654 ACGAATCCCTTCACTTTAGACC 57.796 45.455 0.00 0.00 0.00 3.85
47 48 3.581332 ACGAATCCCTTCACTTTAGACCA 59.419 43.478 0.00 0.00 0.00 4.02
48 49 4.225267 ACGAATCCCTTCACTTTAGACCAT 59.775 41.667 0.00 0.00 0.00 3.55
49 50 5.424252 ACGAATCCCTTCACTTTAGACCATA 59.576 40.000 0.00 0.00 0.00 2.74
50 51 5.986135 CGAATCCCTTCACTTTAGACCATAG 59.014 44.000 0.00 0.00 0.00 2.23
51 52 6.183360 CGAATCCCTTCACTTTAGACCATAGA 60.183 42.308 0.00 0.00 0.00 1.98
52 53 7.510675 AATCCCTTCACTTTAGACCATAGAA 57.489 36.000 0.00 0.00 0.00 2.10
53 54 7.698163 ATCCCTTCACTTTAGACCATAGAAT 57.302 36.000 0.00 0.00 0.00 2.40
54 55 6.889198 TCCCTTCACTTTAGACCATAGAATG 58.111 40.000 0.00 0.00 0.00 2.67
55 56 6.443849 TCCCTTCACTTTAGACCATAGAATGT 59.556 38.462 0.00 0.00 0.00 2.71
56 57 6.763610 CCCTTCACTTTAGACCATAGAATGTC 59.236 42.308 0.00 0.00 0.00 3.06
57 58 7.331026 CCTTCACTTTAGACCATAGAATGTCA 58.669 38.462 0.00 0.00 0.00 3.58
58 59 7.989741 CCTTCACTTTAGACCATAGAATGTCAT 59.010 37.037 0.00 0.00 0.00 3.06
59 60 8.948631 TTCACTTTAGACCATAGAATGTCATC 57.051 34.615 0.00 0.00 0.00 2.92
60 61 8.078060 TCACTTTAGACCATAGAATGTCATCA 57.922 34.615 0.00 0.00 0.00 3.07
61 62 8.539544 TCACTTTAGACCATAGAATGTCATCAA 58.460 33.333 0.00 0.00 0.00 2.57
62 63 8.607459 CACTTTAGACCATAGAATGTCATCAAC 58.393 37.037 0.00 0.00 0.00 3.18
63 64 7.492669 ACTTTAGACCATAGAATGTCATCAACG 59.507 37.037 0.00 0.00 0.00 4.10
64 65 5.598416 AGACCATAGAATGTCATCAACGA 57.402 39.130 0.00 0.00 0.00 3.85
65 66 5.352284 AGACCATAGAATGTCATCAACGAC 58.648 41.667 0.00 0.00 36.40 4.34
66 67 5.127845 AGACCATAGAATGTCATCAACGACT 59.872 40.000 0.00 0.00 36.82 4.18
67 68 5.111989 ACCATAGAATGTCATCAACGACTG 58.888 41.667 0.00 0.00 36.82 3.51
68 69 5.105351 ACCATAGAATGTCATCAACGACTGA 60.105 40.000 0.00 0.00 38.81 3.41
69 70 5.812127 CCATAGAATGTCATCAACGACTGAA 59.188 40.000 0.00 0.00 37.67 3.02
70 71 6.313658 CCATAGAATGTCATCAACGACTGAAA 59.686 38.462 0.00 0.00 37.67 2.69
71 72 7.011763 CCATAGAATGTCATCAACGACTGAAAT 59.988 37.037 0.00 0.00 37.67 2.17
72 73 6.808008 AGAATGTCATCAACGACTGAAATT 57.192 33.333 0.00 0.00 37.67 1.82
73 74 6.605849 AGAATGTCATCAACGACTGAAATTG 58.394 36.000 0.00 0.00 37.67 2.32
74 75 4.145876 TGTCATCAACGACTGAAATTGC 57.854 40.909 0.00 0.00 37.67 3.56
75 76 3.563390 TGTCATCAACGACTGAAATTGCA 59.437 39.130 0.00 0.00 37.67 4.08
76 77 4.216042 TGTCATCAACGACTGAAATTGCAT 59.784 37.500 0.00 0.00 37.67 3.96
77 78 5.411053 TGTCATCAACGACTGAAATTGCATA 59.589 36.000 0.00 0.00 37.67 3.14
78 79 6.093909 TGTCATCAACGACTGAAATTGCATAT 59.906 34.615 0.00 0.00 37.67 1.78
79 80 6.968904 GTCATCAACGACTGAAATTGCATATT 59.031 34.615 0.00 0.00 37.67 1.28
80 81 8.122330 GTCATCAACGACTGAAATTGCATATTA 58.878 33.333 0.00 0.00 37.67 0.98
81 82 8.337532 TCATCAACGACTGAAATTGCATATTAG 58.662 33.333 0.00 0.00 37.67 1.73
82 83 7.841915 TCAACGACTGAAATTGCATATTAGA 57.158 32.000 0.00 0.00 0.00 2.10
83 84 7.684670 TCAACGACTGAAATTGCATATTAGAC 58.315 34.615 0.00 0.00 0.00 2.59
84 85 7.549134 TCAACGACTGAAATTGCATATTAGACT 59.451 33.333 0.00 0.00 0.00 3.24
85 86 7.849804 ACGACTGAAATTGCATATTAGACTT 57.150 32.000 0.00 0.00 0.00 3.01
86 87 8.942338 ACGACTGAAATTGCATATTAGACTTA 57.058 30.769 0.00 0.00 0.00 2.24
87 88 9.035607 ACGACTGAAATTGCATATTAGACTTAG 57.964 33.333 0.00 0.00 0.00 2.18
88 89 8.491152 CGACTGAAATTGCATATTAGACTTAGG 58.509 37.037 0.00 0.00 0.00 2.69
89 90 9.547753 GACTGAAATTGCATATTAGACTTAGGA 57.452 33.333 0.00 0.00 0.00 2.94
162 163 8.484214 AGATATAGATGAGAAACAACTAGGCA 57.516 34.615 0.00 0.00 37.32 4.75
163 164 8.584157 AGATATAGATGAGAAACAACTAGGCAG 58.416 37.037 0.00 0.00 37.32 4.85
164 165 4.899352 AGATGAGAAACAACTAGGCAGT 57.101 40.909 0.00 0.00 36.19 4.40
165 166 4.826556 AGATGAGAAACAACTAGGCAGTC 58.173 43.478 0.00 0.00 32.29 3.51
166 167 4.284490 AGATGAGAAACAACTAGGCAGTCA 59.716 41.667 0.00 0.00 32.29 3.41
167 168 4.415881 TGAGAAACAACTAGGCAGTCAA 57.584 40.909 0.00 0.00 32.29 3.18
168 169 4.380531 TGAGAAACAACTAGGCAGTCAAG 58.619 43.478 0.00 0.00 32.29 3.02
169 170 4.141711 TGAGAAACAACTAGGCAGTCAAGT 60.142 41.667 0.00 0.00 32.29 3.16
170 171 4.781934 AGAAACAACTAGGCAGTCAAGTT 58.218 39.130 0.00 0.00 32.29 2.66
171 172 5.193679 AGAAACAACTAGGCAGTCAAGTTT 58.806 37.500 0.00 0.00 37.11 2.66
172 173 5.652452 AGAAACAACTAGGCAGTCAAGTTTT 59.348 36.000 0.00 0.00 35.80 2.43
173 174 5.914898 AACAACTAGGCAGTCAAGTTTTT 57.085 34.783 0.00 0.00 32.29 1.94
194 195 7.401484 TTTTTATTTTTGCGCTTACAAGGAG 57.599 32.000 9.73 0.00 0.00 3.69
195 196 2.415697 TTTTTGCGCTTACAAGGAGC 57.584 45.000 9.73 0.00 36.79 4.70
196 197 0.596082 TTTTGCGCTTACAAGGAGCC 59.404 50.000 9.73 0.00 36.81 4.70
197 198 0.536233 TTTGCGCTTACAAGGAGCCA 60.536 50.000 9.73 0.00 36.81 4.75
198 199 0.955428 TTGCGCTTACAAGGAGCCAG 60.955 55.000 9.73 0.00 36.81 4.85
199 200 1.376037 GCGCTTACAAGGAGCCAGT 60.376 57.895 0.00 0.00 36.81 4.00
312 314 3.831333 TCATGTGATAAAAGGCCAAGCAA 59.169 39.130 5.01 0.00 0.00 3.91
313 315 3.658757 TGTGATAAAAGGCCAAGCAAC 57.341 42.857 5.01 0.00 0.00 4.17
427 430 2.531771 TCATCGACCCAAGTACAAGGA 58.468 47.619 5.27 0.00 0.00 3.36
429 432 4.283337 TCATCGACCCAAGTACAAGGATA 58.717 43.478 5.27 0.00 0.00 2.59
431 434 5.188163 TCATCGACCCAAGTACAAGGATAAA 59.812 40.000 5.27 0.00 0.00 1.40
432 435 5.486735 TCGACCCAAGTACAAGGATAAAA 57.513 39.130 5.27 0.00 0.00 1.52
503 506 2.011222 ACGAAAACAACACGTCATGGT 58.989 42.857 0.00 0.00 35.33 3.55
553 556 3.699413 TCTCATGTGATGGCAAAATGGA 58.301 40.909 0.00 0.00 0.00 3.41
555 558 4.082081 TCTCATGTGATGGCAAAATGGAAC 60.082 41.667 0.00 0.00 0.00 3.62
556 559 2.721274 TGTGATGGCAAAATGGAACG 57.279 45.000 0.00 0.00 0.00 3.95
557 560 1.271934 TGTGATGGCAAAATGGAACGG 59.728 47.619 0.00 0.00 0.00 4.44
565 576 3.679502 GGCAAAATGGAACGGAAATGAAG 59.320 43.478 0.00 0.00 0.00 3.02
572 583 3.320541 TGGAACGGAAATGAAGCATTGTT 59.679 39.130 0.00 0.00 34.04 2.83
575 586 3.564511 ACGGAAATGAAGCATTGTTTCG 58.435 40.909 8.46 0.00 34.04 3.46
583 594 3.131223 TGAAGCATTGTTTCGTGGGAAAA 59.869 39.130 8.46 0.00 43.39 2.29
589 600 5.333263 GCATTGTTTCGTGGGAAAATGAAAG 60.333 40.000 0.00 0.00 43.39 2.62
596 607 5.009631 TCGTGGGAAAATGAAAGATGACAT 58.990 37.500 0.00 0.00 0.00 3.06
613 624 5.850557 TGACATGGGCAATATTAGTTTGG 57.149 39.130 0.00 0.00 0.00 3.28
615 626 6.135454 TGACATGGGCAATATTAGTTTGGAT 58.865 36.000 0.00 0.00 0.00 3.41
616 627 6.040729 TGACATGGGCAATATTAGTTTGGATG 59.959 38.462 0.00 0.00 0.00 3.51
619 630 6.713762 TGGGCAATATTAGTTTGGATGAAG 57.286 37.500 0.00 0.00 0.00 3.02
626 637 7.772332 ATATTAGTTTGGATGAAGACGACAC 57.228 36.000 0.00 0.00 0.00 3.67
678 689 9.872757 GTTTTGATTAAAACGACATCTCAAGTA 57.127 29.630 9.74 0.00 44.19 2.24
682 693 8.175069 TGATTAAAACGACATCTCAAGTAATGC 58.825 33.333 0.00 0.00 0.00 3.56
683 694 5.940192 AAAACGACATCTCAAGTAATGCA 57.060 34.783 0.00 0.00 0.00 3.96
687 698 5.931532 ACGACATCTCAAGTAATGCAAAAG 58.068 37.500 0.00 0.00 0.00 2.27
691 704 3.430453 TCTCAAGTAATGCAAAAGGGGG 58.570 45.455 0.00 0.00 0.00 5.40
713 726 6.718912 GGGGGAAATCAAATGAAATTGGAAAA 59.281 34.615 0.00 0.00 40.26 2.29
714 727 7.232330 GGGGGAAATCAAATGAAATTGGAAAAA 59.768 33.333 0.00 0.00 40.26 1.94
805 819 2.927553 CTATTCCAGCTTGTGTTGGC 57.072 50.000 0.00 0.00 43.20 4.52
810 824 1.160137 CCAGCTTGTGTTGGCTAGTC 58.840 55.000 0.00 0.00 37.73 2.59
812 826 0.393077 AGCTTGTGTTGGCTAGTCGT 59.607 50.000 0.00 0.00 37.00 4.34
813 827 0.512952 GCTTGTGTTGGCTAGTCGTG 59.487 55.000 0.00 0.00 0.00 4.35
814 828 1.865865 CTTGTGTTGGCTAGTCGTGT 58.134 50.000 0.00 0.00 0.00 4.49
815 829 1.526887 CTTGTGTTGGCTAGTCGTGTG 59.473 52.381 0.00 0.00 0.00 3.82
819 833 0.250166 GTTGGCTAGTCGTGTGGGTT 60.250 55.000 0.00 0.00 0.00 4.11
820 834 0.470766 TTGGCTAGTCGTGTGGGTTT 59.529 50.000 0.00 0.00 0.00 3.27
825 839 2.671396 GCTAGTCGTGTGGGTTTACATG 59.329 50.000 0.00 0.00 38.60 3.21
827 841 3.478857 AGTCGTGTGGGTTTACATGAA 57.521 42.857 0.00 0.00 45.29 2.57
829 843 4.200874 AGTCGTGTGGGTTTACATGAAAA 58.799 39.130 0.00 0.00 45.29 2.29
831 845 5.300792 AGTCGTGTGGGTTTACATGAAAAAT 59.699 36.000 0.00 0.00 45.29 1.82
832 846 6.487331 AGTCGTGTGGGTTTACATGAAAAATA 59.513 34.615 0.00 0.00 45.29 1.40
834 848 7.113825 GTCGTGTGGGTTTACATGAAAAATAAC 59.886 37.037 0.00 1.41 45.29 1.89
835 849 6.363896 CGTGTGGGTTTACATGAAAAATAACC 59.636 38.462 0.00 3.58 39.39 2.85
842 856 2.422127 ACATGAAAAATAACCCGAGCCG 59.578 45.455 0.00 0.00 0.00 5.52
843 857 0.806241 TGAAAAATAACCCGAGCCGC 59.194 50.000 0.00 0.00 0.00 6.53
844 858 0.806241 GAAAAATAACCCGAGCCGCA 59.194 50.000 0.00 0.00 0.00 5.69
845 859 1.200484 GAAAAATAACCCGAGCCGCAA 59.800 47.619 0.00 0.00 0.00 4.85
868 882 4.681978 GCGCCGACCAAGTGGAGT 62.682 66.667 3.83 0.00 38.94 3.85
871 885 1.374758 GCCGACCAAGTGGAGTGAG 60.375 63.158 3.83 0.00 38.94 3.51
940 966 2.635338 GCGTCAACCAAACGACCC 59.365 61.111 0.00 0.00 42.62 4.46
1112 1156 1.874299 AACCCTCCCCAAATCGGCAT 61.874 55.000 0.00 0.00 0.00 4.40
1173 1217 0.548926 TTGGGTAGGGTCTGCCATGA 60.549 55.000 0.00 0.00 38.00 3.07
1190 1235 5.106038 TGCCATGATCTGATCTGTGTTTTTC 60.106 40.000 17.82 5.30 0.00 2.29
1428 1476 3.717294 GCCGAGGACCACCACCAT 61.717 66.667 0.00 0.00 38.94 3.55
1443 1491 2.872408 CCATCACCATGGTCACCAC 58.128 57.895 16.53 0.00 44.46 4.16
1482 1530 0.330604 ATGATGACTGCTGCCTTGGT 59.669 50.000 0.00 0.00 0.00 3.67
1521 1570 6.603599 GGTAATGTTAATTCAGGCCTTCTCTT 59.396 38.462 0.00 0.00 0.00 2.85
1548 1597 7.940850 ACATGTATTATGAGTTTTGGGTATGC 58.059 34.615 0.00 0.00 0.00 3.14
1589 1638 6.744112 TGGCTGTGGTTAATTTCTTGTTTAG 58.256 36.000 0.00 0.00 0.00 1.85
1599 1648 9.255304 GTTAATTTCTTGTTTAGATTGCACCAA 57.745 29.630 0.00 0.00 31.54 3.67
1615 1664 9.423061 GATTGCACCAATAATGTAGTTTTTCTT 57.577 29.630 0.00 0.00 33.90 2.52
1659 1708 5.914898 TGTTGAGAACTTAGATCATCGGA 57.085 39.130 0.00 0.00 0.00 4.55
1677 1726 8.142994 TCATCGGATTATGCTTAGTTTTTCTC 57.857 34.615 0.00 0.00 0.00 2.87
1682 1731 5.796350 TTATGCTTAGTTTTTCTCGAGCC 57.204 39.130 7.81 0.00 35.77 4.70
1694 1743 0.532573 CTCGAGCCAGCTCTTTGGTA 59.467 55.000 17.06 0.00 40.49 3.25
1704 1753 5.278957 GCCAGCTCTTTGGTATCTTTTTGAA 60.279 40.000 0.00 0.00 40.49 2.69
1725 1774 1.471829 GGGGCTTGGTTGGTTCCTTG 61.472 60.000 0.00 0.00 0.00 3.61
1732 1781 4.683129 GCTTGGTTGGTTCCTTGTGAAATT 60.683 41.667 0.00 0.00 33.94 1.82
1733 1782 4.664150 TGGTTGGTTCCTTGTGAAATTC 57.336 40.909 0.00 0.00 33.94 2.17
1777 1854 4.326826 CATATATGATTTCCCGTGCTGGT 58.673 43.478 6.92 0.00 35.15 4.00
1781 1858 0.804989 GATTTCCCGTGCTGGTTGAG 59.195 55.000 0.00 0.00 35.15 3.02
1783 1860 0.534203 TTTCCCGTGCTGGTTGAGTC 60.534 55.000 0.00 0.00 35.15 3.36
1785 1862 0.541063 TCCCGTGCTGGTTGAGTCTA 60.541 55.000 0.00 0.00 35.15 2.59
1787 1864 1.754803 CCCGTGCTGGTTGAGTCTATA 59.245 52.381 0.00 0.00 35.15 1.31
1789 1866 3.181465 CCCGTGCTGGTTGAGTCTATATT 60.181 47.826 0.00 0.00 35.15 1.28
1790 1867 4.442706 CCGTGCTGGTTGAGTCTATATTT 58.557 43.478 0.00 0.00 0.00 1.40
1792 1869 5.220662 CCGTGCTGGTTGAGTCTATATTTTG 60.221 44.000 0.00 0.00 0.00 2.44
1793 1870 5.351465 CGTGCTGGTTGAGTCTATATTTTGT 59.649 40.000 0.00 0.00 0.00 2.83
1864 1941 6.996180 AAAGCCTTATATCTACTAGCACCA 57.004 37.500 0.00 0.00 0.00 4.17
1901 1980 9.073368 GCATTGTGTACGAGTAATATATACAGG 57.927 37.037 0.00 0.00 0.00 4.00
1919 1998 7.968014 ATACAGGATCACAGATATATGCTGA 57.032 36.000 10.00 7.67 40.37 4.26
1986 2065 4.517285 ACACAACTTCGAGATAATGCCAT 58.483 39.130 0.00 0.00 0.00 4.40
1993 2072 4.541973 TCGAGATAATGCCATGCTGTAT 57.458 40.909 0.00 0.00 0.00 2.29
2009 2088 2.693591 CTGTATCAGGAGCCCGTAAAGA 59.306 50.000 0.00 0.00 0.00 2.52
2010 2089 2.693591 TGTATCAGGAGCCCGTAAAGAG 59.306 50.000 0.00 0.00 0.00 2.85
2021 2100 3.065648 GCCCGTAAAGAGTTTTGTTGACA 59.934 43.478 0.00 0.00 0.00 3.58
2022 2101 4.788521 GCCCGTAAAGAGTTTTGTTGACAG 60.789 45.833 0.00 0.00 0.00 3.51
2029 2108 6.515272 AAGAGTTTTGTTGACAGTGTGATT 57.485 33.333 0.00 0.00 0.00 2.57
2048 2127 9.340695 GTGTGATTTTTGATTTATCAATGTCGA 57.659 29.630 6.03 0.00 45.30 4.20
2070 2149 7.538678 GTCGATAAATCCATTGTTTATCATGGC 59.461 37.037 15.04 2.67 43.65 4.40
2071 2150 6.808212 CGATAAATCCATTGTTTATCATGGCC 59.192 38.462 15.04 0.00 43.65 5.36
2114 2196 7.537715 CACATCTTTGGAACACTGCATTTATA 58.462 34.615 0.00 0.00 39.29 0.98
2117 2199 7.701539 TCTTTGGAACACTGCATTTATACAT 57.298 32.000 0.00 0.00 39.29 2.29
2128 2210 9.803130 CACTGCATTTATACATTCTAAATCGAG 57.197 33.333 0.00 0.00 28.67 4.04
2169 2251 4.690280 GGTAGGATACGTCTGCTAGACTAC 59.310 50.000 2.34 0.00 44.28 2.73
2170 2252 4.693042 AGGATACGTCTGCTAGACTACT 57.307 45.455 12.45 0.82 42.92 2.57
2174 2256 1.130749 ACGTCTGCTAGACTACTTGCG 59.869 52.381 12.45 0.00 45.06 4.85
2210 2292 3.457610 CAGGGTTGCAGATTGTTGTTT 57.542 42.857 0.00 0.00 0.00 2.83
2216 2298 4.744631 GGTTGCAGATTGTTGTTTACCTTG 59.255 41.667 0.00 0.00 0.00 3.61
2221 2303 5.451242 GCAGATTGTTGTTTACCTTGGACAA 60.451 40.000 0.00 0.00 0.00 3.18
2222 2304 6.738453 GCAGATTGTTGTTTACCTTGGACAAT 60.738 38.462 0.00 0.00 39.59 2.71
2224 2306 6.549364 AGATTGTTGTTTACCTTGGACAATGA 59.451 34.615 4.46 0.00 37.71 2.57
2226 2308 4.950475 TGTTGTTTACCTTGGACAATGACA 59.050 37.500 0.00 0.00 35.91 3.58
2231 2313 6.549364 TGTTTACCTTGGACAATGACAATCTT 59.451 34.615 0.00 0.00 0.00 2.40
2238 2320 8.472413 CCTTGGACAATGACAATCTTGAATAAT 58.528 33.333 0.00 0.00 0.00 1.28
2239 2321 9.865321 CTTGGACAATGACAATCTTGAATAATT 57.135 29.630 0.00 0.00 0.00 1.40
2240 2322 9.642327 TTGGACAATGACAATCTTGAATAATTG 57.358 29.630 0.00 4.24 38.54 2.32
2264 2346 9.591792 TTGATAGATGTTCAATGTTCTCTAGTG 57.408 33.333 0.00 0.00 0.00 2.74
2265 2347 7.708322 TGATAGATGTTCAATGTTCTCTAGTGC 59.292 37.037 0.00 0.00 0.00 4.40
2266 2348 5.798132 AGATGTTCAATGTTCTCTAGTGCA 58.202 37.500 0.00 0.00 0.00 4.57
2267 2349 6.413052 AGATGTTCAATGTTCTCTAGTGCAT 58.587 36.000 0.00 0.00 0.00 3.96
2268 2350 6.538021 AGATGTTCAATGTTCTCTAGTGCATC 59.462 38.462 0.00 0.00 0.00 3.91
2269 2351 5.550290 TGTTCAATGTTCTCTAGTGCATCA 58.450 37.500 0.00 0.00 0.00 3.07
2270 2352 5.997129 TGTTCAATGTTCTCTAGTGCATCAA 59.003 36.000 0.00 0.00 0.00 2.57
2271 2353 6.656270 TGTTCAATGTTCTCTAGTGCATCAAT 59.344 34.615 0.00 0.00 0.00 2.57
2272 2354 6.673154 TCAATGTTCTCTAGTGCATCAATG 57.327 37.500 0.00 0.00 0.00 2.82
2273 2355 6.408869 TCAATGTTCTCTAGTGCATCAATGA 58.591 36.000 0.00 0.00 0.00 2.57
2274 2356 7.052248 TCAATGTTCTCTAGTGCATCAATGAT 58.948 34.615 0.00 0.00 0.00 2.45
2275 2357 8.206189 TCAATGTTCTCTAGTGCATCAATGATA 58.794 33.333 0.00 0.00 0.00 2.15
2276 2358 7.959689 ATGTTCTCTAGTGCATCAATGATAC 57.040 36.000 0.00 0.00 0.00 2.24
2277 2359 6.283694 TGTTCTCTAGTGCATCAATGATACC 58.716 40.000 0.00 0.00 0.00 2.73
2278 2360 6.098838 TGTTCTCTAGTGCATCAATGATACCT 59.901 38.462 0.00 0.00 0.00 3.08
2281 2363 6.098838 TCTCTAGTGCATCAATGATACCTTGT 59.901 38.462 0.00 0.00 0.00 3.16
2283 2365 7.791029 TCTAGTGCATCAATGATACCTTGTTA 58.209 34.615 0.00 0.00 0.00 2.41
2296 2378 1.508632 CTTGTTACGTGTCCACCCAG 58.491 55.000 0.00 0.00 0.00 4.45
2304 2386 2.289444 ACGTGTCCACCCAGAAATACAG 60.289 50.000 0.00 0.00 0.00 2.74
2305 2387 2.289444 CGTGTCCACCCAGAAATACAGT 60.289 50.000 0.00 0.00 0.00 3.55
2331 2413 7.038587 TCCTTGAGAAGTGCCTGTAATTAACTA 60.039 37.037 0.00 0.00 0.00 2.24
2335 2417 8.809066 TGAGAAGTGCCTGTAATTAACTAGTTA 58.191 33.333 11.38 11.38 0.00 2.24
2336 2418 8.999220 AGAAGTGCCTGTAATTAACTAGTTAC 57.001 34.615 14.96 7.04 0.00 2.50
2338 2420 8.543862 AAGTGCCTGTAATTAACTAGTTACAC 57.456 34.615 14.96 15.35 34.72 2.90
2340 2422 9.028284 AGTGCCTGTAATTAACTAGTTACACTA 57.972 33.333 20.83 7.93 34.72 2.74
2359 2441 5.892119 ACACTATACTACCTGCTAGCTGAAA 59.108 40.000 21.96 9.02 0.00 2.69
2361 2443 6.039941 CACTATACTACCTGCTAGCTGAAACT 59.960 42.308 21.96 5.36 0.00 2.66
2362 2444 3.878160 ACTACCTGCTAGCTGAAACTC 57.122 47.619 21.96 0.00 0.00 3.01
2366 2448 4.026356 ACCTGCTAGCTGAAACTCAAAT 57.974 40.909 21.96 0.00 0.00 2.32
2368 2450 3.128242 CCTGCTAGCTGAAACTCAAATGG 59.872 47.826 21.96 0.00 0.00 3.16
2371 2453 4.216257 TGCTAGCTGAAACTCAAATGGAAC 59.784 41.667 17.23 0.00 0.00 3.62
2384 2471 1.228521 TGGAACATGGCCAGTGTGG 60.229 57.895 13.05 0.15 41.55 4.17
2392 2479 0.178978 TGGCCAGTGTGGTATGCAAA 60.179 50.000 0.00 0.00 40.46 3.68
2402 2489 4.513692 GTGTGGTATGCAAACACTTGTAGA 59.486 41.667 16.38 0.00 40.79 2.59
2404 2491 5.238432 TGTGGTATGCAAACACTTGTAGAAG 59.762 40.000 16.38 0.00 36.16 2.85
2412 2499 5.334414 GCAAACACTTGTAGAAGGACTGATG 60.334 44.000 4.45 0.00 34.79 3.07
2422 2509 1.302752 GGACTGATGGCTGCACACA 60.303 57.895 0.50 0.00 0.00 3.72
2451 2542 4.743348 GCACCAAACCTTGAATTTGTGGAT 60.743 41.667 0.00 0.00 35.65 3.41
2452 2543 4.990426 CACCAAACCTTGAATTTGTGGATC 59.010 41.667 0.00 0.00 35.65 3.36
2456 2547 3.499338 ACCTTGAATTTGTGGATCAGCA 58.501 40.909 0.00 0.00 0.00 4.41
2459 2550 5.163322 ACCTTGAATTTGTGGATCAGCAAAA 60.163 36.000 14.85 2.36 37.98 2.44
2461 2552 6.293027 CCTTGAATTTGTGGATCAGCAAAAAC 60.293 38.462 14.85 12.45 37.98 2.43
2462 2553 5.668471 TGAATTTGTGGATCAGCAAAAACA 58.332 33.333 14.85 14.12 37.98 2.83
2463 2554 6.111382 TGAATTTGTGGATCAGCAAAAACAA 58.889 32.000 14.85 2.97 37.98 2.83
2465 2556 6.790285 ATTTGTGGATCAGCAAAAACAATC 57.210 33.333 14.85 0.00 37.98 2.67
2468 2561 5.531634 TGTGGATCAGCAAAAACAATCTTC 58.468 37.500 0.00 0.00 0.00 2.87
2484 2577 6.970484 ACAATCTTCCATGCGAAATAATACC 58.030 36.000 0.00 0.00 0.00 2.73
2507 2601 8.905103 ACCATACATTTAAATCAGCGTTAAAC 57.095 30.769 0.00 0.00 34.24 2.01
2509 2603 9.567848 CCATACATTTAAATCAGCGTTAAACTT 57.432 29.630 0.00 0.00 34.24 2.66
2516 2610 8.996988 TTAAATCAGCGTTAAACTTGTAAGTG 57.003 30.769 0.00 0.00 39.66 3.16
2519 2613 4.748102 TCAGCGTTAAACTTGTAAGTGGAG 59.252 41.667 0.00 0.00 39.66 3.86
2523 2617 5.119743 GCGTTAAACTTGTAAGTGGAGGTAG 59.880 44.000 0.00 0.00 39.66 3.18
2525 2619 6.517194 CGTTAAACTTGTAAGTGGAGGTAGGA 60.517 42.308 0.00 0.00 39.66 2.94
2527 2621 5.678955 AACTTGTAAGTGGAGGTAGGATC 57.321 43.478 0.00 0.00 39.66 3.36
2529 2623 5.091552 ACTTGTAAGTGGAGGTAGGATCAA 58.908 41.667 0.00 0.00 37.98 2.57
2530 2624 5.726793 ACTTGTAAGTGGAGGTAGGATCAAT 59.273 40.000 0.00 0.00 37.98 2.57
2531 2625 5.871396 TGTAAGTGGAGGTAGGATCAATC 57.129 43.478 0.00 0.00 0.00 2.67
2532 2626 5.277250 TGTAAGTGGAGGTAGGATCAATCA 58.723 41.667 0.00 0.00 0.00 2.57
2534 2628 4.000928 AGTGGAGGTAGGATCAATCACT 57.999 45.455 0.00 0.00 0.00 3.41
2536 2630 4.896482 AGTGGAGGTAGGATCAATCACTAC 59.104 45.833 0.00 0.00 37.07 2.73
2537 2631 4.896482 GTGGAGGTAGGATCAATCACTACT 59.104 45.833 13.55 0.00 37.73 2.57
2538 2632 5.364157 GTGGAGGTAGGATCAATCACTACTT 59.636 44.000 13.55 9.18 37.73 2.24
2540 2634 5.598830 GGAGGTAGGATCAATCACTACTTGA 59.401 44.000 13.55 0.00 37.73 3.02
2542 2636 7.364762 GGAGGTAGGATCAATCACTACTTGAAA 60.365 40.741 13.55 0.00 37.92 2.69
2543 2637 7.918076 AGGTAGGATCAATCACTACTTGAAAA 58.082 34.615 13.55 0.00 37.92 2.29
2569 2844 5.957798 AGTTGACATGCCTTAATCAATGTG 58.042 37.500 0.00 0.00 33.85 3.21
2571 2846 5.565592 TGACATGCCTTAATCAATGTGTC 57.434 39.130 0.00 0.00 36.26 3.67
2584 2861 4.651778 TCAATGTGTCTGGGGTTTTAGAG 58.348 43.478 0.00 0.00 0.00 2.43
2585 2862 3.721087 ATGTGTCTGGGGTTTTAGAGG 57.279 47.619 0.00 0.00 0.00 3.69
2597 2874 4.384537 GGGTTTTAGAGGTACACCATACCC 60.385 50.000 0.38 0.00 38.33 3.69
2598 2875 4.225717 GGTTTTAGAGGTACACCATACCCA 59.774 45.833 0.38 0.00 38.33 4.51
2600 2877 6.240145 GTTTTAGAGGTACACCATACCCAAA 58.760 40.000 0.38 0.00 38.33 3.28
2604 2881 5.034200 AGAGGTACACCATACCCAAATGTA 58.966 41.667 0.38 0.00 38.33 2.29
2605 2882 5.130477 AGAGGTACACCATACCCAAATGTAG 59.870 44.000 0.38 0.00 38.33 2.74
2620 2897 6.146184 CCCAAATGTAGATTCATACTACTGCG 59.854 42.308 0.00 0.00 40.30 5.18
2624 2901 4.578928 TGTAGATTCATACTACTGCGCAGA 59.421 41.667 42.03 24.16 40.30 4.26
2626 2903 4.363999 AGATTCATACTACTGCGCAGAAC 58.636 43.478 42.03 16.67 0.00 3.01
2648 2925 6.124088 ACGATGCCTTGATACAGATTTTTC 57.876 37.500 0.00 0.00 0.00 2.29
2649 2926 5.882557 ACGATGCCTTGATACAGATTTTTCT 59.117 36.000 0.00 0.00 0.00 2.52
2654 2931 7.725251 TGCCTTGATACAGATTTTTCTTTTGT 58.275 30.769 0.00 0.00 0.00 2.83
2655 2932 8.203485 TGCCTTGATACAGATTTTTCTTTTGTT 58.797 29.630 0.00 0.00 0.00 2.83
2656 2933 8.703336 GCCTTGATACAGATTTTTCTTTTGTTC 58.297 33.333 0.00 0.00 0.00 3.18
2657 2934 9.748708 CCTTGATACAGATTTTTCTTTTGTTCA 57.251 29.630 0.00 0.00 0.00 3.18
2672 2949 7.140705 TCTTTTGTTCAGCAAAGATGTGTATG 58.859 34.615 0.00 0.00 46.40 2.39
2673 2950 6.631971 TTTGTTCAGCAAAGATGTGTATGA 57.368 33.333 0.00 0.00 41.68 2.15
2682 2959 6.548622 AGCAAAGATGTGTATGAATGCCTAAT 59.451 34.615 0.00 0.00 33.19 1.73
2685 2964 7.516198 AAGATGTGTATGAATGCCTAATTCC 57.484 36.000 0.00 0.00 43.61 3.01
2690 2969 5.047802 GTGTATGAATGCCTAATTCCATGGG 60.048 44.000 13.02 0.00 43.61 4.00
2705 2984 6.371595 TTCCATGGGTGAAGCATTTTATTT 57.628 33.333 13.02 0.00 0.00 1.40
2707 2986 5.104982 TCCATGGGTGAAGCATTTTATTTCC 60.105 40.000 13.02 0.00 0.00 3.13
2708 2987 4.448537 TGGGTGAAGCATTTTATTTCCG 57.551 40.909 0.00 0.00 0.00 4.30
2713 2992 6.405842 GGGTGAAGCATTTTATTTCCGAAGAT 60.406 38.462 0.00 0.00 0.00 2.40
2716 2995 5.774498 AGCATTTTATTTCCGAAGATCCC 57.226 39.130 0.00 0.00 0.00 3.85
2717 2996 5.200483 AGCATTTTATTTCCGAAGATCCCA 58.800 37.500 0.00 0.00 0.00 4.37
2718 2997 5.300286 AGCATTTTATTTCCGAAGATCCCAG 59.700 40.000 0.00 0.00 0.00 4.45
2723 3002 2.203126 CCGAAGATCCCAGCTGGC 60.203 66.667 28.39 14.14 0.00 4.85
2734 3013 1.134610 CCCAGCTGGCATTTTCATTCC 60.135 52.381 28.39 0.00 0.00 3.01
2736 3015 2.613691 CAGCTGGCATTTTCATTCCAC 58.386 47.619 5.57 0.00 0.00 4.02
2737 3016 1.203052 AGCTGGCATTTTCATTCCACG 59.797 47.619 0.00 0.00 0.00 4.94
2748 3027 4.993029 TTCATTCCACGTTCCTGTTTTT 57.007 36.364 0.00 0.00 0.00 1.94
2752 3031 4.993029 TTCCACGTTCCTGTTTTTCATT 57.007 36.364 0.00 0.00 0.00 2.57
2756 3035 3.242712 CACGTTCCTGTTTTTCATTGCAC 59.757 43.478 0.00 0.00 0.00 4.57
2763 3042 5.009610 TCCTGTTTTTCATTGCACTAACCTC 59.990 40.000 0.00 0.00 0.00 3.85
2764 3043 5.221224 CCTGTTTTTCATTGCACTAACCTCA 60.221 40.000 0.00 0.00 0.00 3.86
2765 3044 6.214191 TGTTTTTCATTGCACTAACCTCAA 57.786 33.333 0.00 0.00 0.00 3.02
2766 3045 6.039616 TGTTTTTCATTGCACTAACCTCAAC 58.960 36.000 0.00 0.00 0.00 3.18
2767 3046 4.481930 TTTCATTGCACTAACCTCAACG 57.518 40.909 0.00 0.00 0.00 4.10
2768 3047 3.120321 TCATTGCACTAACCTCAACGT 57.880 42.857 0.00 0.00 0.00 3.99
2772 3051 2.206750 TGCACTAACCTCAACGTGTTC 58.793 47.619 0.00 0.00 0.00 3.18
2831 3110 3.126225 GAGGAGTGCTGCTGCTGC 61.126 66.667 22.51 22.51 46.29 5.25
2846 3125 1.239296 GCTGCTTCTGGTGATGTGCA 61.239 55.000 0.00 0.00 0.00 4.57
2852 3131 2.785540 TCTGGTGATGTGCATGCTTA 57.214 45.000 20.33 8.13 0.00 3.09
2853 3132 3.286329 TCTGGTGATGTGCATGCTTAT 57.714 42.857 20.33 12.89 0.00 1.73
2880 3159 2.432206 TCGTGTCTTGCATCTTCGAA 57.568 45.000 0.00 0.00 0.00 3.71
2883 3162 3.123453 TCGTGTCTTGCATCTTCGAAATG 59.877 43.478 0.00 7.53 0.00 2.32
2885 3164 3.189287 GTGTCTTGCATCTTCGAAATGGT 59.811 43.478 16.66 0.00 0.00 3.55
2887 3166 3.189287 GTCTTGCATCTTCGAAATGGTGT 59.811 43.478 16.66 0.00 0.00 4.16
2889 3168 1.199789 TGCATCTTCGAAATGGTGTGC 59.800 47.619 16.66 12.59 0.00 4.57
2900 3183 2.057830 TGGTGTGCCAGTGTCTAGG 58.942 57.895 0.00 0.00 40.46 3.02
2908 3191 3.451178 GTGCCAGTGTCTAGGGAATCTTA 59.549 47.826 0.00 0.00 0.00 2.10
2910 3193 4.721776 TGCCAGTGTCTAGGGAATCTTATT 59.278 41.667 0.00 0.00 0.00 1.40
2921 3204 9.561069 TCTAGGGAATCTTATTGCTTGTTATTC 57.439 33.333 0.00 0.00 0.00 1.75
2923 3206 8.829373 AGGGAATCTTATTGCTTGTTATTCTT 57.171 30.769 0.00 0.00 0.00 2.52
2924 3207 8.907885 AGGGAATCTTATTGCTTGTTATTCTTC 58.092 33.333 0.00 0.00 0.00 2.87
2925 3208 8.138074 GGGAATCTTATTGCTTGTTATTCTTCC 58.862 37.037 0.00 0.00 0.00 3.46
2927 3210 9.943163 GAATCTTATTGCTTGTTATTCTTCCTC 57.057 33.333 0.00 0.00 0.00 3.71
2928 3211 9.692325 AATCTTATTGCTTGTTATTCTTCCTCT 57.308 29.630 0.00 0.00 0.00 3.69
2936 3219 9.770097 TGCTTGTTATTCTTCCTCTATATGAAG 57.230 33.333 0.00 0.00 39.44 3.02
2937 3220 9.213799 GCTTGTTATTCTTCCTCTATATGAAGG 57.786 37.037 0.00 0.90 38.76 3.46
2963 3249 6.533819 TCAGTTACCTGTGTCAAATAAACG 57.466 37.500 0.00 0.00 39.82 3.60
2974 3266 7.704271 TGTGTCAAATAAACGGTGTTTATTGA 58.296 30.769 21.68 18.08 35.47 2.57
2987 3279 5.048083 GGTGTTTATTGATGAACTGCTTGGA 60.048 40.000 1.21 0.00 0.00 3.53
2999 3291 2.225091 ACTGCTTGGACCATGGATGAAA 60.225 45.455 21.47 6.26 0.00 2.69
3000 3292 2.827322 CTGCTTGGACCATGGATGAAAA 59.173 45.455 21.47 4.44 0.00 2.29
3003 3295 4.016444 GCTTGGACCATGGATGAAAAGTA 58.984 43.478 21.47 0.00 0.00 2.24
3032 3324 5.182001 GCAAAGTGTACATGATCCAGACTTT 59.818 40.000 0.00 5.42 33.54 2.66
3034 3326 7.066284 GCAAAGTGTACATGATCCAGACTTTAT 59.934 37.037 0.00 0.00 32.38 1.40
3035 3327 9.599866 CAAAGTGTACATGATCCAGACTTTATA 57.400 33.333 0.00 0.00 32.38 0.98
3047 3340 8.723942 ATCCAGACTTTATATTTATCATCGGC 57.276 34.615 0.00 0.00 0.00 5.54
3058 3351 2.945080 ATCATCGGCTGATTGTGGAT 57.055 45.000 4.93 2.69 42.07 3.41
3060 3353 4.564782 ATCATCGGCTGATTGTGGATAT 57.435 40.909 4.93 0.00 42.07 1.63
3064 3357 3.884895 TCGGCTGATTGTGGATATTTGT 58.115 40.909 0.00 0.00 0.00 2.83
3069 3362 5.413499 GCTGATTGTGGATATTTGTTGCTT 58.587 37.500 0.00 0.00 0.00 3.91
3077 3370 7.385267 TGTGGATATTTGTTGCTTAAATGCTT 58.615 30.769 0.00 0.00 0.00 3.91
3120 3413 8.166061 ACATCAAGTAATAGTGCCATATGGAAT 58.834 33.333 26.47 12.01 37.39 3.01
3202 3495 3.101428 GTGACGTACACCGCACGG 61.101 66.667 7.71 7.71 43.59 4.94
3204 3497 4.712425 GACGTACACCGCACGGCT 62.712 66.667 9.43 0.00 44.13 5.52
3205 3498 4.289245 ACGTACACCGCACGGCTT 62.289 61.111 9.43 0.00 43.59 4.35
3206 3499 3.773630 CGTACACCGCACGGCTTG 61.774 66.667 9.43 3.43 39.32 4.01
3215 3514 0.179189 CGCACGGCTTGGAAAAGATC 60.179 55.000 0.00 0.00 0.00 2.75
3218 3517 2.747446 GCACGGCTTGGAAAAGATCTTA 59.253 45.455 8.75 0.00 0.00 2.10
3220 3519 4.723248 CACGGCTTGGAAAAGATCTTAAC 58.277 43.478 8.75 5.87 0.00 2.01
3239 3538 7.652727 TCTTAACAAGTCATCTATCCATCTCG 58.347 38.462 0.00 0.00 0.00 4.04
3240 3539 4.250116 ACAAGTCATCTATCCATCTCGC 57.750 45.455 0.00 0.00 0.00 5.03
3242 3541 4.236147 CAAGTCATCTATCCATCTCGCTG 58.764 47.826 0.00 0.00 0.00 5.18
3243 3542 3.760738 AGTCATCTATCCATCTCGCTGA 58.239 45.455 0.00 0.00 0.00 4.26
3257 3556 3.160585 CTGACCACCAAGCAGGGA 58.839 61.111 0.10 0.00 43.89 4.20
3285 3590 2.608988 CTGGGACTGGGAGCACCT 60.609 66.667 0.00 0.00 41.11 4.00
3294 3599 2.679716 GGAGCACCTGGAATGGCT 59.320 61.111 0.00 3.54 39.75 4.75
3299 3604 1.099879 GCACCTGGAATGGCTAGCTG 61.100 60.000 15.72 2.42 0.00 4.24
3302 3607 0.548031 CCTGGAATGGCTAGCTGGAA 59.452 55.000 15.72 0.00 0.00 3.53
3321 3626 2.973899 CGGAGGGTGGACTCTGTG 59.026 66.667 0.00 0.00 38.72 3.66
3323 3628 1.674057 GGAGGGTGGACTCTGTGTG 59.326 63.158 0.00 0.00 37.63 3.82
3328 3633 0.674895 GGTGGACTCTGTGTGGATGC 60.675 60.000 0.00 0.00 0.00 3.91
3337 3642 0.246360 TGTGTGGATGCTGTAGTCCG 59.754 55.000 0.00 0.00 37.32 4.79
3347 3652 1.000019 TGTAGTCCGCTAGGGTGCT 60.000 57.895 6.02 5.91 38.33 4.40
3384 3689 0.762418 TCCCGTTGAAGAAGAGGCAA 59.238 50.000 0.00 0.00 0.00 4.52
3387 3692 2.154462 CCGTTGAAGAAGAGGCAATGT 58.846 47.619 0.00 0.00 0.00 2.71
3389 3694 3.004734 CCGTTGAAGAAGAGGCAATGTTT 59.995 43.478 0.00 0.00 0.00 2.83
3399 3704 0.544120 GGCAATGTTTGGAAGGGGGA 60.544 55.000 0.00 0.00 0.00 4.81
3450 3755 6.096705 CCTTCACATTGCCAATTATAGTGGAA 59.903 38.462 8.38 0.00 38.54 3.53
3451 3756 6.698008 TCACATTGCCAATTATAGTGGAAG 57.302 37.500 8.38 0.00 38.54 3.46
3467 3772 1.975680 GGAAGTCCAGACCCTAACACA 59.024 52.381 0.00 0.00 35.64 3.72
3468 3773 2.028020 GGAAGTCCAGACCCTAACACAG 60.028 54.545 0.00 0.00 35.64 3.66
3483 3788 1.003355 ACAGGTGATGGTCTTGCCG 60.003 57.895 0.00 0.00 41.21 5.69
3484 3789 1.746615 CAGGTGATGGTCTTGCCGG 60.747 63.158 0.00 0.00 41.21 6.13
3503 3808 4.253685 CCGGTCAAAGTGTTGATGTAGAT 58.746 43.478 0.00 0.00 45.38 1.98
3519 3824 2.386661 AGATACGCACCCTGTTTCTG 57.613 50.000 0.00 0.00 0.00 3.02
3537 3842 1.476891 CTGTTCGGCTGCCTAGAACTA 59.523 52.381 27.94 18.35 43.19 2.24
3542 3847 2.159099 TCGGCTGCCTAGAACTAACATG 60.159 50.000 17.92 0.00 0.00 3.21
3543 3848 2.159099 CGGCTGCCTAGAACTAACATGA 60.159 50.000 17.92 0.00 0.00 3.07
3550 3855 5.189736 TGCCTAGAACTAACATGAAGGACAT 59.810 40.000 0.00 0.00 40.17 3.06
3552 3857 6.258947 GCCTAGAACTAACATGAAGGACATTC 59.741 42.308 0.00 0.00 37.07 2.67
3565 3870 6.064060 TGAAGGACATTCTCACTTTTCATGT 58.936 36.000 1.07 0.00 38.83 3.21
3584 3889 2.945008 TGTCGTAGTAATCCAGGGTACG 59.055 50.000 0.00 0.00 38.23 3.67
3585 3890 2.291741 GTCGTAGTAATCCAGGGTACGG 59.708 54.545 5.85 0.00 37.62 4.02
3604 3909 1.680249 GGTCATCCTCCAGCAACTTCC 60.680 57.143 0.00 0.00 0.00 3.46
3611 3916 2.771943 CCTCCAGCAACTTCCTACCATA 59.228 50.000 0.00 0.00 0.00 2.74
3617 3922 5.245531 CAGCAACTTCCTACCATAGAACAA 58.754 41.667 0.00 0.00 0.00 2.83
3618 3923 5.122396 CAGCAACTTCCTACCATAGAACAAC 59.878 44.000 0.00 0.00 0.00 3.32
3699 4004 1.957177 GTATCTGAGCCATCGACCTCA 59.043 52.381 10.65 10.65 36.69 3.86
3743 4048 2.693762 CGGCCACAATGTCTGCCAG 61.694 63.158 19.53 10.82 44.22 4.85
3748 4053 1.241165 CACAATGTCTGCCAGCTTCA 58.759 50.000 0.00 0.00 0.00 3.02
3749 4054 1.610038 CACAATGTCTGCCAGCTTCAA 59.390 47.619 0.00 0.00 0.00 2.69
3753 4058 0.601046 TGTCTGCCAGCTTCAAGACG 60.601 55.000 12.44 0.00 0.00 4.18
3755 4060 0.966179 TCTGCCAGCTTCAAGACGTA 59.034 50.000 0.00 0.00 0.00 3.57
3760 4065 2.417379 GCCAGCTTCAAGACGTAGATCA 60.417 50.000 0.00 0.00 0.00 2.92
3783 4088 3.428589 GCATCTTTGCCTGGAGAATTGAC 60.429 47.826 0.00 0.00 43.38 3.18
3790 4095 1.912043 CCTGGAGAATTGACCCACTCT 59.088 52.381 0.00 0.00 0.00 3.24
3796 4101 2.019984 GAATTGACCCACTCTGGATGC 58.980 52.381 0.00 0.00 40.96 3.91
3804 4109 2.374504 CCCACTCTGGATGCCATAATCT 59.625 50.000 0.00 0.00 40.96 2.40
3807 4112 2.074576 CTCTGGATGCCATAATCTGCG 58.925 52.381 0.00 0.00 30.82 5.18
3813 4118 4.065088 GGATGCCATAATCTGCGAAAGTA 58.935 43.478 0.00 0.00 0.00 2.24
3820 4125 0.179145 ATCTGCGAAAGTACGACCGG 60.179 55.000 0.00 0.00 35.09 5.28
3825 4130 1.153686 GAAAGTACGACCGGCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.154706 AGGGATTCGTTTCTACAGTATTCACT 59.845 38.462 0.00 0.00 34.42 3.41
10 11 6.338937 AGGGATTCGTTTCTACAGTATTCAC 58.661 40.000 0.00 0.00 0.00 3.18
11 12 6.540438 AGGGATTCGTTTCTACAGTATTCA 57.460 37.500 0.00 0.00 0.00 2.57
12 13 7.010275 GTGAAGGGATTCGTTTCTACAGTATTC 59.990 40.741 0.00 0.00 0.00 1.75
13 14 6.817140 GTGAAGGGATTCGTTTCTACAGTATT 59.183 38.462 0.00 0.00 0.00 1.89
14 15 6.154706 AGTGAAGGGATTCGTTTCTACAGTAT 59.845 38.462 0.00 0.00 0.00 2.12
15 16 5.479375 AGTGAAGGGATTCGTTTCTACAGTA 59.521 40.000 0.00 0.00 0.00 2.74
16 17 4.283722 AGTGAAGGGATTCGTTTCTACAGT 59.716 41.667 0.00 0.00 0.00 3.55
17 18 4.822026 AGTGAAGGGATTCGTTTCTACAG 58.178 43.478 0.00 0.00 0.00 2.74
18 19 4.884668 AGTGAAGGGATTCGTTTCTACA 57.115 40.909 0.00 0.00 0.00 2.74
19 20 7.063191 GTCTAAAGTGAAGGGATTCGTTTCTAC 59.937 40.741 0.00 0.00 0.00 2.59
20 21 7.095270 GTCTAAAGTGAAGGGATTCGTTTCTA 58.905 38.462 0.00 0.00 0.00 2.10
21 22 5.932883 GTCTAAAGTGAAGGGATTCGTTTCT 59.067 40.000 0.00 0.00 0.00 2.52
22 23 5.121925 GGTCTAAAGTGAAGGGATTCGTTTC 59.878 44.000 0.00 0.00 0.00 2.78
23 24 5.001874 GGTCTAAAGTGAAGGGATTCGTTT 58.998 41.667 0.00 0.00 0.00 3.60
24 25 4.041198 TGGTCTAAAGTGAAGGGATTCGTT 59.959 41.667 0.00 0.00 0.00 3.85
25 26 3.581332 TGGTCTAAAGTGAAGGGATTCGT 59.419 43.478 0.00 0.00 0.00 3.85
26 27 4.202245 TGGTCTAAAGTGAAGGGATTCG 57.798 45.455 0.00 0.00 0.00 3.34
27 28 7.125792 TCTATGGTCTAAAGTGAAGGGATTC 57.874 40.000 0.00 0.00 0.00 2.52
28 29 7.510675 TTCTATGGTCTAAAGTGAAGGGATT 57.489 36.000 0.00 0.00 0.00 3.01
29 30 7.127955 ACATTCTATGGTCTAAAGTGAAGGGAT 59.872 37.037 0.00 0.00 33.60 3.85
30 31 6.443849 ACATTCTATGGTCTAAAGTGAAGGGA 59.556 38.462 0.00 0.00 33.60 4.20
31 32 6.653989 ACATTCTATGGTCTAAAGTGAAGGG 58.346 40.000 0.00 0.00 33.60 3.95
32 33 7.331026 TGACATTCTATGGTCTAAAGTGAAGG 58.669 38.462 0.00 0.00 35.11 3.46
33 34 8.954950 ATGACATTCTATGGTCTAAAGTGAAG 57.045 34.615 0.00 0.00 35.11 3.02
34 35 8.539544 TGATGACATTCTATGGTCTAAAGTGAA 58.460 33.333 0.00 0.00 35.11 3.18
35 36 8.078060 TGATGACATTCTATGGTCTAAAGTGA 57.922 34.615 0.00 0.00 35.11 3.41
36 37 8.607459 GTTGATGACATTCTATGGTCTAAAGTG 58.393 37.037 0.00 0.00 35.11 3.16
37 38 7.492669 CGTTGATGACATTCTATGGTCTAAAGT 59.507 37.037 0.00 0.00 35.11 2.66
38 39 7.706607 TCGTTGATGACATTCTATGGTCTAAAG 59.293 37.037 0.00 0.00 35.11 1.85
39 40 7.491372 GTCGTTGATGACATTCTATGGTCTAAA 59.509 37.037 0.00 0.00 38.75 1.85
40 41 6.978659 GTCGTTGATGACATTCTATGGTCTAA 59.021 38.462 0.00 0.00 38.75 2.10
41 42 6.321435 AGTCGTTGATGACATTCTATGGTCTA 59.679 38.462 6.16 0.00 41.41 2.59
42 43 5.127845 AGTCGTTGATGACATTCTATGGTCT 59.872 40.000 6.16 0.00 41.41 3.85
43 44 5.233050 CAGTCGTTGATGACATTCTATGGTC 59.767 44.000 6.16 0.00 41.41 4.02
44 45 5.105351 TCAGTCGTTGATGACATTCTATGGT 60.105 40.000 6.16 0.00 41.41 3.55
45 46 5.351458 TCAGTCGTTGATGACATTCTATGG 58.649 41.667 6.16 0.00 41.41 2.74
46 47 6.892310 TTCAGTCGTTGATGACATTCTATG 57.108 37.500 6.16 0.00 41.41 2.23
47 48 8.393366 CAATTTCAGTCGTTGATGACATTCTAT 58.607 33.333 6.16 0.00 41.41 1.98
48 49 7.624134 GCAATTTCAGTCGTTGATGACATTCTA 60.624 37.037 6.16 0.00 41.41 2.10
49 50 6.605849 CAATTTCAGTCGTTGATGACATTCT 58.394 36.000 6.16 0.00 41.41 2.40
50 51 5.284660 GCAATTTCAGTCGTTGATGACATTC 59.715 40.000 6.16 0.00 41.41 2.67
51 52 5.156355 GCAATTTCAGTCGTTGATGACATT 58.844 37.500 6.16 0.00 41.41 2.71
52 53 4.216042 TGCAATTTCAGTCGTTGATGACAT 59.784 37.500 6.16 0.00 41.41 3.06
53 54 3.563390 TGCAATTTCAGTCGTTGATGACA 59.437 39.130 6.16 0.00 41.41 3.58
54 55 4.145876 TGCAATTTCAGTCGTTGATGAC 57.854 40.909 0.00 0.00 39.21 3.06
55 56 6.682423 ATATGCAATTTCAGTCGTTGATGA 57.318 33.333 0.00 0.00 35.27 2.92
56 57 8.337532 TCTAATATGCAATTTCAGTCGTTGATG 58.662 33.333 0.00 0.00 35.27 3.07
57 58 8.338259 GTCTAATATGCAATTTCAGTCGTTGAT 58.662 33.333 0.00 0.00 35.27 2.57
58 59 7.549134 AGTCTAATATGCAATTTCAGTCGTTGA 59.451 33.333 0.00 0.00 0.00 3.18
59 60 7.688372 AGTCTAATATGCAATTTCAGTCGTTG 58.312 34.615 0.00 0.00 0.00 4.10
60 61 7.849804 AGTCTAATATGCAATTTCAGTCGTT 57.150 32.000 0.00 0.00 0.00 3.85
61 62 7.849804 AAGTCTAATATGCAATTTCAGTCGT 57.150 32.000 0.00 0.00 0.00 4.34
62 63 8.491152 CCTAAGTCTAATATGCAATTTCAGTCG 58.509 37.037 0.00 0.00 0.00 4.18
63 64 9.547753 TCCTAAGTCTAATATGCAATTTCAGTC 57.452 33.333 0.00 0.00 0.00 3.51
136 137 9.588096 TGCCTAGTTGTTTCTCATCTATATCTA 57.412 33.333 0.00 0.00 30.82 1.98
137 138 8.484214 TGCCTAGTTGTTTCTCATCTATATCT 57.516 34.615 0.00 0.00 30.82 1.98
138 139 8.364142 ACTGCCTAGTTGTTTCTCATCTATATC 58.636 37.037 0.00 0.00 31.66 1.63
139 140 8.256356 ACTGCCTAGTTGTTTCTCATCTATAT 57.744 34.615 0.00 0.00 31.66 0.86
140 141 7.342026 TGACTGCCTAGTTGTTTCTCATCTATA 59.658 37.037 0.00 0.00 37.25 1.31
141 142 6.155221 TGACTGCCTAGTTGTTTCTCATCTAT 59.845 38.462 0.00 0.00 37.25 1.98
142 143 5.480422 TGACTGCCTAGTTGTTTCTCATCTA 59.520 40.000 0.00 0.00 37.25 1.98
143 144 4.284490 TGACTGCCTAGTTGTTTCTCATCT 59.716 41.667 0.00 0.00 37.25 2.90
144 145 4.569943 TGACTGCCTAGTTGTTTCTCATC 58.430 43.478 0.00 0.00 37.25 2.92
145 146 4.623932 TGACTGCCTAGTTGTTTCTCAT 57.376 40.909 0.00 0.00 37.25 2.90
146 147 4.141711 ACTTGACTGCCTAGTTGTTTCTCA 60.142 41.667 0.00 0.00 37.25 3.27
147 148 4.381411 ACTTGACTGCCTAGTTGTTTCTC 58.619 43.478 0.00 0.00 37.25 2.87
148 149 4.423625 ACTTGACTGCCTAGTTGTTTCT 57.576 40.909 0.00 0.00 37.25 2.52
149 150 5.500645 AAACTTGACTGCCTAGTTGTTTC 57.499 39.130 0.00 0.00 39.97 2.78
150 151 5.914898 AAAACTTGACTGCCTAGTTGTTT 57.085 34.783 0.00 0.00 39.97 2.83
151 152 5.914898 AAAAACTTGACTGCCTAGTTGTT 57.085 34.783 0.00 0.00 39.97 2.83
170 171 6.074034 GCTCCTTGTAAGCGCAAAAATAAAAA 60.074 34.615 11.47 0.00 0.00 1.94
171 172 5.404066 GCTCCTTGTAAGCGCAAAAATAAAA 59.596 36.000 11.47 0.00 0.00 1.52
172 173 4.920927 GCTCCTTGTAAGCGCAAAAATAAA 59.079 37.500 11.47 0.00 0.00 1.40
173 174 4.481463 GCTCCTTGTAAGCGCAAAAATAA 58.519 39.130 11.47 0.00 0.00 1.40
174 175 3.119637 GGCTCCTTGTAAGCGCAAAAATA 60.120 43.478 11.47 0.00 40.77 1.40
175 176 2.352715 GGCTCCTTGTAAGCGCAAAAAT 60.353 45.455 11.47 0.00 40.77 1.82
176 177 1.000717 GGCTCCTTGTAAGCGCAAAAA 60.001 47.619 11.47 0.00 40.77 1.94
177 178 0.596082 GGCTCCTTGTAAGCGCAAAA 59.404 50.000 11.47 0.00 40.77 2.44
178 179 0.536233 TGGCTCCTTGTAAGCGCAAA 60.536 50.000 11.47 0.00 40.77 3.68
179 180 0.955428 CTGGCTCCTTGTAAGCGCAA 60.955 55.000 11.47 0.00 40.77 4.85
180 181 1.375908 CTGGCTCCTTGTAAGCGCA 60.376 57.895 11.47 0.00 40.77 6.09
181 182 1.362406 GACTGGCTCCTTGTAAGCGC 61.362 60.000 0.00 0.00 40.77 5.92
182 183 0.037326 TGACTGGCTCCTTGTAAGCG 60.037 55.000 0.00 0.00 40.77 4.68
183 184 2.079925 CTTGACTGGCTCCTTGTAAGC 58.920 52.381 0.00 0.00 39.09 3.09
184 185 3.685139 TCTTGACTGGCTCCTTGTAAG 57.315 47.619 0.00 0.00 0.00 2.34
185 186 4.640771 ATTCTTGACTGGCTCCTTGTAA 57.359 40.909 0.00 0.00 0.00 2.41
186 187 4.041567 TGAATTCTTGACTGGCTCCTTGTA 59.958 41.667 7.05 0.00 0.00 2.41
187 188 3.181440 TGAATTCTTGACTGGCTCCTTGT 60.181 43.478 7.05 0.00 0.00 3.16
188 189 3.415212 TGAATTCTTGACTGGCTCCTTG 58.585 45.455 7.05 0.00 0.00 3.61
189 190 3.795688 TGAATTCTTGACTGGCTCCTT 57.204 42.857 7.05 0.00 0.00 3.36
190 191 3.073650 AGTTGAATTCTTGACTGGCTCCT 59.926 43.478 7.05 0.00 0.00 3.69
191 192 3.416156 AGTTGAATTCTTGACTGGCTCC 58.584 45.455 7.05 0.00 0.00 4.70
192 193 4.322567 AGAGTTGAATTCTTGACTGGCTC 58.677 43.478 7.05 3.32 0.00 4.70
193 194 4.363991 AGAGTTGAATTCTTGACTGGCT 57.636 40.909 7.05 1.00 0.00 4.75
194 195 5.645497 ACATAGAGTTGAATTCTTGACTGGC 59.355 40.000 7.05 0.00 0.00 4.85
195 196 7.678947 AACATAGAGTTGAATTCTTGACTGG 57.321 36.000 7.05 2.42 39.49 4.00
196 197 9.390795 CAAAACATAGAGTTGAATTCTTGACTG 57.609 33.333 7.05 1.11 41.19 3.51
197 198 8.571336 CCAAAACATAGAGTTGAATTCTTGACT 58.429 33.333 7.05 8.04 41.19 3.41
198 199 8.352942 ACCAAAACATAGAGTTGAATTCTTGAC 58.647 33.333 7.05 3.34 41.19 3.18
199 200 8.352201 CACCAAAACATAGAGTTGAATTCTTGA 58.648 33.333 7.05 0.00 41.19 3.02
234 235 7.110155 AGAAACGATAACCCACTTTATGACAT 58.890 34.615 0.00 0.00 0.00 3.06
283 285 5.248020 TGGCCTTTTATCACATGAAACCATT 59.752 36.000 3.32 0.00 0.00 3.16
284 286 4.776837 TGGCCTTTTATCACATGAAACCAT 59.223 37.500 3.32 0.00 0.00 3.55
467 470 6.049149 TGTTTTCGTTCAAAAATATTGCCCA 58.951 32.000 0.00 0.00 35.68 5.36
503 506 8.248945 TCGTTTTCACCCAAACTATTTTTGTTA 58.751 29.630 0.00 0.00 34.91 2.41
520 523 4.990543 TCACATGAGATGTCGTTTTCAC 57.009 40.909 0.00 0.00 42.70 3.18
553 556 3.980775 CGAAACAATGCTTCATTTCCGTT 59.019 39.130 0.00 0.00 31.05 4.44
555 558 3.361644 CACGAAACAATGCTTCATTTCCG 59.638 43.478 0.00 0.00 31.05 4.30
556 559 3.674753 CCACGAAACAATGCTTCATTTCC 59.325 43.478 0.00 0.00 31.05 3.13
557 560 3.674753 CCCACGAAACAATGCTTCATTTC 59.325 43.478 0.00 0.00 31.05 2.17
565 576 3.648009 TCATTTTCCCACGAAACAATGC 58.352 40.909 0.00 0.00 37.72 3.56
572 583 4.824537 TGTCATCTTTCATTTTCCCACGAA 59.175 37.500 0.00 0.00 0.00 3.85
575 586 5.413499 CCATGTCATCTTTCATTTTCCCAC 58.587 41.667 0.00 0.00 0.00 4.61
583 594 6.989155 AATATTGCCCATGTCATCTTTCAT 57.011 33.333 0.00 0.00 0.00 2.57
589 600 6.265196 TCCAAACTAATATTGCCCATGTCATC 59.735 38.462 0.00 0.00 0.00 2.92
596 607 6.321181 GTCTTCATCCAAACTAATATTGCCCA 59.679 38.462 0.00 0.00 0.00 5.36
707 720 8.343168 TCCTTCTAGCGATTTTTATTTTTCCA 57.657 30.769 0.00 0.00 0.00 3.53
708 721 7.915923 CCTCCTTCTAGCGATTTTTATTTTTCC 59.084 37.037 0.00 0.00 0.00 3.13
709 722 7.915923 CCCTCCTTCTAGCGATTTTTATTTTTC 59.084 37.037 0.00 0.00 0.00 2.29
713 726 4.822350 GCCCTCCTTCTAGCGATTTTTATT 59.178 41.667 0.00 0.00 0.00 1.40
714 727 4.103311 AGCCCTCCTTCTAGCGATTTTTAT 59.897 41.667 0.00 0.00 0.00 1.40
798 812 0.949105 CCCACACGACTAGCCAACAC 60.949 60.000 0.00 0.00 0.00 3.32
805 819 4.182693 TCATGTAAACCCACACGACTAG 57.817 45.455 0.00 0.00 0.00 2.57
810 824 6.363896 GGTTATTTTTCATGTAAACCCACACG 59.636 38.462 0.00 0.00 32.09 4.49
819 833 4.095185 CGGCTCGGGTTATTTTTCATGTAA 59.905 41.667 0.00 0.00 0.00 2.41
820 834 3.623960 CGGCTCGGGTTATTTTTCATGTA 59.376 43.478 0.00 0.00 0.00 2.29
825 839 0.806241 TGCGGCTCGGGTTATTTTTC 59.194 50.000 0.00 0.00 0.00 2.29
827 841 0.808755 CTTGCGGCTCGGGTTATTTT 59.191 50.000 0.00 0.00 0.00 1.82
829 843 1.451387 CCTTGCGGCTCGGGTTATT 60.451 57.895 0.00 0.00 0.00 1.40
831 845 4.090588 CCCTTGCGGCTCGGGTTA 62.091 66.667 16.00 0.00 33.16 2.85
851 865 4.681978 ACTCCACTTGGTCGGCGC 62.682 66.667 0.00 0.00 36.34 6.53
852 866 2.738521 CACTCCACTTGGTCGGCG 60.739 66.667 0.00 0.00 36.34 6.46
853 867 1.374758 CTCACTCCACTTGGTCGGC 60.375 63.158 0.00 0.00 36.34 5.54
854 868 1.293498 CCTCACTCCACTTGGTCGG 59.707 63.158 0.00 0.00 36.34 4.79
855 869 0.038159 GACCTCACTCCACTTGGTCG 60.038 60.000 0.00 0.00 37.93 4.79
856 870 0.038159 CGACCTCACTCCACTTGGTC 60.038 60.000 0.00 0.00 42.53 4.02
857 871 2.050269 CGACCTCACTCCACTTGGT 58.950 57.895 0.00 0.00 36.34 3.67
858 872 1.374758 GCGACCTCACTCCACTTGG 60.375 63.158 0.00 0.00 0.00 3.61
859 873 0.668706 CAGCGACCTCACTCCACTTG 60.669 60.000 0.00 0.00 0.00 3.16
863 877 2.997315 CCCAGCGACCTCACTCCA 60.997 66.667 0.00 0.00 0.00 3.86
899 925 1.514443 CGGAGGAAAGACGAGACGC 60.514 63.158 0.00 0.00 0.00 5.19
1112 1156 2.049802 GGGAAAGTGACGCGTCGA 60.050 61.111 31.88 19.30 0.00 4.20
1173 1217 4.154918 GCGGAAGAAAAACACAGATCAGAT 59.845 41.667 0.00 0.00 0.00 2.90
1305 1353 1.222936 CTGGCCCTGGCTGAAGTAG 59.777 63.158 8.29 0.00 41.60 2.57
1341 1389 2.263741 CGGCGGCGGGTAGTAGTAT 61.264 63.158 25.36 0.00 0.00 2.12
1443 1491 2.124693 GTTGTGGTGGTGGTGGTGG 61.125 63.158 0.00 0.00 0.00 4.61
1521 1570 9.119418 CATACCCAAAACTCATAATACATGTCA 57.881 33.333 0.00 0.00 0.00 3.58
1548 1597 1.003545 GCCAACATCACATCCGAATCG 60.004 52.381 0.00 0.00 0.00 3.34
1589 1638 8.986477 AGAAAAACTACATTATTGGTGCAATC 57.014 30.769 0.00 0.00 35.54 2.67
1615 1664 5.995282 ACAATGAGTTCCAAGTTCGTCATAA 59.005 36.000 0.00 0.00 0.00 1.90
1646 1695 8.994429 AACTAAGCATAATCCGATGATCTAAG 57.006 34.615 0.00 0.00 0.00 2.18
1648 1697 9.778741 AAAAACTAAGCATAATCCGATGATCTA 57.221 29.630 0.00 0.00 0.00 1.98
1659 1708 5.880332 TGGCTCGAGAAAAACTAAGCATAAT 59.120 36.000 18.75 0.00 38.47 1.28
1677 1726 1.137872 AGATACCAAAGAGCTGGCTCG 59.862 52.381 15.59 5.51 46.90 5.03
1682 1731 6.865205 CCTTTCAAAAAGATACCAAAGAGCTG 59.135 38.462 0.00 0.00 0.00 4.24
1694 1743 3.317406 ACCAAGCCCCTTTCAAAAAGAT 58.683 40.909 1.06 0.00 0.00 2.40
1704 1753 1.152333 GGAACCAACCAAGCCCCTT 60.152 57.895 0.00 0.00 0.00 3.95
1748 1797 6.403636 GCACGGGAAATCATATATGCTTTAGG 60.404 42.308 13.15 8.81 0.00 2.69
1755 1804 4.326826 ACCAGCACGGGAAATCATATATG 58.673 43.478 6.36 6.36 40.22 1.78
1758 1807 2.951642 CAACCAGCACGGGAAATCATAT 59.048 45.455 0.00 0.00 40.22 1.78
1760 1809 1.176527 CAACCAGCACGGGAAATCAT 58.823 50.000 0.00 0.00 40.22 2.45
1800 1877 7.341445 TGTTTAGGCAACAACTACTGAAATT 57.659 32.000 0.00 0.00 42.76 1.82
1829 1906 8.814038 AGATATAAGGCTTTTCATTGTGAAGT 57.186 30.769 4.45 0.00 37.70 3.01
1845 1922 9.262358 GTTTCTTTGGTGCTAGTAGATATAAGG 57.738 37.037 0.00 0.00 0.00 2.69
1849 1926 9.167311 CTTTGTTTCTTTGGTGCTAGTAGATAT 57.833 33.333 0.00 0.00 0.00 1.63
1864 1941 5.885881 TCGTACACAATGCTTTGTTTCTTT 58.114 33.333 14.80 1.53 43.57 2.52
1901 1980 5.873164 TGCACATCAGCATATATCTGTGATC 59.127 40.000 4.78 0.00 40.11 2.92
1957 2036 8.765219 GCATTATCTCGAAGTTGTGTACATATT 58.235 33.333 0.00 0.00 0.00 1.28
1958 2037 7.385205 GGCATTATCTCGAAGTTGTGTACATAT 59.615 37.037 0.00 0.00 0.00 1.78
1959 2038 6.700081 GGCATTATCTCGAAGTTGTGTACATA 59.300 38.462 0.00 0.00 0.00 2.29
1960 2039 5.523916 GGCATTATCTCGAAGTTGTGTACAT 59.476 40.000 0.00 0.00 0.00 2.29
1961 2040 4.868171 GGCATTATCTCGAAGTTGTGTACA 59.132 41.667 0.00 0.00 0.00 2.90
1962 2041 4.868171 TGGCATTATCTCGAAGTTGTGTAC 59.132 41.667 0.00 0.00 0.00 2.90
1963 2042 5.079689 TGGCATTATCTCGAAGTTGTGTA 57.920 39.130 0.00 0.00 0.00 2.90
1979 2058 2.860009 CTCCTGATACAGCATGGCATT 58.140 47.619 0.00 0.00 43.62 3.56
1986 2065 0.396556 TACGGGCTCCTGATACAGCA 60.397 55.000 1.01 0.00 37.38 4.41
1993 2072 1.640917 AACTCTTTACGGGCTCCTGA 58.359 50.000 1.01 0.00 0.00 3.86
2009 2088 7.151308 TCAAAAATCACACTGTCAACAAAACT 58.849 30.769 0.00 0.00 0.00 2.66
2010 2089 7.344910 TCAAAAATCACACTGTCAACAAAAC 57.655 32.000 0.00 0.00 0.00 2.43
2048 2127 7.290714 ACTGGCCATGATAAACAATGGATTTAT 59.709 33.333 5.51 0.00 36.31 1.40
2070 2149 4.869215 TGTGCAAACAATATGTCAACTGG 58.131 39.130 0.00 0.00 0.00 4.00
2071 2150 6.384224 AGATGTGCAAACAATATGTCAACTG 58.616 36.000 0.00 0.00 0.00 3.16
2143 2225 3.647113 TCTAGCAGACGTATCCTACCTCT 59.353 47.826 0.00 0.00 0.00 3.69
2193 2275 4.584327 AGGTAAACAACAATCTGCAACC 57.416 40.909 0.00 0.00 0.00 3.77
2203 2285 4.950475 TGTCATTGTCCAAGGTAAACAACA 59.050 37.500 0.00 0.00 35.87 3.33
2206 2288 6.068010 AGATTGTCATTGTCCAAGGTAAACA 58.932 36.000 0.00 0.00 0.00 2.83
2207 2289 6.575162 AGATTGTCATTGTCCAAGGTAAAC 57.425 37.500 0.00 0.00 0.00 2.01
2210 2292 5.875224 TCAAGATTGTCATTGTCCAAGGTA 58.125 37.500 0.00 0.00 0.00 3.08
2238 2320 9.591792 CACTAGAGAACATTGAACATCTATCAA 57.408 33.333 0.00 0.00 40.76 2.57
2239 2321 7.708322 GCACTAGAGAACATTGAACATCTATCA 59.292 37.037 0.00 0.00 0.00 2.15
2240 2322 7.708322 TGCACTAGAGAACATTGAACATCTATC 59.292 37.037 0.00 0.00 0.00 2.08
2248 2330 6.880529 TCATTGATGCACTAGAGAACATTGAA 59.119 34.615 0.00 0.00 0.00 2.69
2252 2334 6.933521 GGTATCATTGATGCACTAGAGAACAT 59.066 38.462 15.34 0.00 0.00 2.71
2253 2335 6.098838 AGGTATCATTGATGCACTAGAGAACA 59.901 38.462 15.34 0.00 0.00 3.18
2254 2336 6.520272 AGGTATCATTGATGCACTAGAGAAC 58.480 40.000 15.34 0.00 0.00 3.01
2256 2338 6.098838 ACAAGGTATCATTGATGCACTAGAGA 59.901 38.462 15.34 0.00 0.00 3.10
2257 2339 6.286758 ACAAGGTATCATTGATGCACTAGAG 58.713 40.000 15.34 0.00 0.00 2.43
2260 2342 6.478673 CGTAACAAGGTATCATTGATGCACTA 59.521 38.462 15.34 0.00 0.00 2.74
2262 2344 5.064707 ACGTAACAAGGTATCATTGATGCAC 59.935 40.000 15.34 4.37 0.00 4.57
2263 2345 5.064579 CACGTAACAAGGTATCATTGATGCA 59.935 40.000 15.34 0.00 0.00 3.96
2264 2346 5.064707 ACACGTAACAAGGTATCATTGATGC 59.935 40.000 9.46 7.78 0.00 3.91
2265 2347 6.238103 GGACACGTAACAAGGTATCATTGATG 60.238 42.308 9.46 0.00 0.00 3.07
2266 2348 5.815740 GGACACGTAACAAGGTATCATTGAT 59.184 40.000 4.28 4.28 0.00 2.57
2267 2349 5.172934 GGACACGTAACAAGGTATCATTGA 58.827 41.667 1.33 0.00 0.00 2.57
2268 2350 4.932799 TGGACACGTAACAAGGTATCATTG 59.067 41.667 0.00 0.00 0.00 2.82
2269 2351 4.933400 GTGGACACGTAACAAGGTATCATT 59.067 41.667 0.00 0.00 0.00 2.57
2270 2352 4.501071 GTGGACACGTAACAAGGTATCAT 58.499 43.478 0.00 0.00 0.00 2.45
2271 2353 3.306225 GGTGGACACGTAACAAGGTATCA 60.306 47.826 0.00 0.00 0.00 2.15
2272 2354 3.256558 GGTGGACACGTAACAAGGTATC 58.743 50.000 0.00 0.00 0.00 2.24
2273 2355 2.027837 GGGTGGACACGTAACAAGGTAT 60.028 50.000 0.00 0.00 0.00 2.73
2274 2356 1.344114 GGGTGGACACGTAACAAGGTA 59.656 52.381 0.00 0.00 0.00 3.08
2275 2357 0.107268 GGGTGGACACGTAACAAGGT 59.893 55.000 0.00 0.00 0.00 3.50
2276 2358 0.107081 TGGGTGGACACGTAACAAGG 59.893 55.000 0.00 0.00 0.00 3.61
2277 2359 1.069513 TCTGGGTGGACACGTAACAAG 59.930 52.381 0.00 0.00 0.00 3.16
2278 2360 1.121378 TCTGGGTGGACACGTAACAA 58.879 50.000 0.00 0.00 0.00 2.83
2281 2363 3.324268 TGTATTTCTGGGTGGACACGTAA 59.676 43.478 0.00 0.00 0.00 3.18
2283 2365 1.695242 TGTATTTCTGGGTGGACACGT 59.305 47.619 0.00 0.00 0.00 4.49
2296 2378 4.393371 GGCACTTCTCAAGGACTGTATTTC 59.607 45.833 0.00 0.00 0.00 2.17
2304 2386 3.402628 TTACAGGCACTTCTCAAGGAC 57.597 47.619 0.00 0.00 34.60 3.85
2305 2387 4.640771 AATTACAGGCACTTCTCAAGGA 57.359 40.909 0.00 0.00 34.60 3.36
2335 2417 5.050126 TCAGCTAGCAGGTAGTATAGTGT 57.950 43.478 18.83 0.00 0.00 3.55
2336 2418 6.039941 AGTTTCAGCTAGCAGGTAGTATAGTG 59.960 42.308 18.83 1.46 0.00 2.74
2338 2420 6.263392 TGAGTTTCAGCTAGCAGGTAGTATAG 59.737 42.308 18.83 0.00 0.00 1.31
2340 2422 4.956700 TGAGTTTCAGCTAGCAGGTAGTAT 59.043 41.667 18.83 0.00 0.00 2.12
2350 2432 5.947228 TGTTCCATTTGAGTTTCAGCTAG 57.053 39.130 0.00 0.00 0.00 3.42
2359 2441 2.173519 CTGGCCATGTTCCATTTGAGT 58.826 47.619 5.51 0.00 32.37 3.41
2361 2443 1.894466 CACTGGCCATGTTCCATTTGA 59.106 47.619 5.51 0.00 32.37 2.69
2362 2444 1.619827 ACACTGGCCATGTTCCATTTG 59.380 47.619 5.51 7.56 32.37 2.32
2366 2448 1.228521 CCACACTGGCCATGTTCCA 60.229 57.895 5.51 4.18 0.00 3.53
2368 2450 1.745087 CATACCACACTGGCCATGTTC 59.255 52.381 5.51 0.00 42.67 3.18
2371 2453 0.680601 TGCATACCACACTGGCCATG 60.681 55.000 5.51 9.86 42.67 3.66
2373 2455 0.178978 TTTGCATACCACACTGGCCA 60.179 50.000 4.71 4.71 42.67 5.36
2374 2456 0.243636 GTTTGCATACCACACTGGCC 59.756 55.000 0.00 0.00 42.67 5.36
2375 2457 0.958091 TGTTTGCATACCACACTGGC 59.042 50.000 4.77 0.00 42.67 4.85
2376 2458 2.704725 GTGTTTGCATACCACACTGG 57.295 50.000 4.77 0.00 45.02 4.00
2384 2471 5.701290 AGTCCTTCTACAAGTGTTTGCATAC 59.299 40.000 0.00 0.00 37.85 2.39
2392 2479 3.307059 GCCATCAGTCCTTCTACAAGTGT 60.307 47.826 0.00 0.00 0.00 3.55
2396 2483 2.355108 GCAGCCATCAGTCCTTCTACAA 60.355 50.000 0.00 0.00 0.00 2.41
2402 2489 0.607489 GTGTGCAGCCATCAGTCCTT 60.607 55.000 0.00 0.00 0.00 3.36
2404 2491 0.679002 ATGTGTGCAGCCATCAGTCC 60.679 55.000 0.00 0.00 0.00 3.85
2412 2499 2.047939 GCCCAAATGTGTGCAGCC 60.048 61.111 0.00 0.00 0.00 4.85
2435 2526 3.499338 TGCTGATCCACAAATTCAAGGT 58.501 40.909 0.00 0.00 0.00 3.50
2443 2534 5.916318 AGATTGTTTTTGCTGATCCACAAA 58.084 33.333 6.23 6.23 34.11 2.83
2444 2535 5.534207 AGATTGTTTTTGCTGATCCACAA 57.466 34.783 0.00 0.00 0.00 3.33
2451 2542 4.309099 GCATGGAAGATTGTTTTTGCTGA 58.691 39.130 0.00 0.00 0.00 4.26
2452 2543 3.122278 CGCATGGAAGATTGTTTTTGCTG 59.878 43.478 0.00 0.00 0.00 4.41
2456 2547 8.776376 ATTATTTCGCATGGAAGATTGTTTTT 57.224 26.923 0.00 0.00 35.70 1.94
2459 2550 7.068103 TGGTATTATTTCGCATGGAAGATTGTT 59.932 33.333 0.00 0.00 35.70 2.83
2461 2552 6.969366 TGGTATTATTTCGCATGGAAGATTG 58.031 36.000 0.00 0.00 35.70 2.67
2462 2553 7.765695 ATGGTATTATTTCGCATGGAAGATT 57.234 32.000 0.00 0.00 35.70 2.40
2463 2554 7.882791 TGTATGGTATTATTTCGCATGGAAGAT 59.117 33.333 0.00 0.00 35.70 2.40
2465 2556 7.433708 TGTATGGTATTATTTCGCATGGAAG 57.566 36.000 0.00 0.00 35.70 3.46
2495 2589 5.302360 TCCACTTACAAGTTTAACGCTGAT 58.698 37.500 7.12 0.00 37.08 2.90
2496 2590 4.695396 TCCACTTACAAGTTTAACGCTGA 58.305 39.130 7.12 0.00 37.08 4.26
2497 2591 4.084013 CCTCCACTTACAAGTTTAACGCTG 60.084 45.833 0.00 0.00 37.08 5.18
2498 2592 4.062991 CCTCCACTTACAAGTTTAACGCT 58.937 43.478 0.00 0.00 37.08 5.07
2499 2593 3.811497 ACCTCCACTTACAAGTTTAACGC 59.189 43.478 0.00 0.00 37.08 4.84
2501 2595 6.762333 TCCTACCTCCACTTACAAGTTTAAC 58.238 40.000 0.00 0.00 37.08 2.01
2507 2601 5.677319 TTGATCCTACCTCCACTTACAAG 57.323 43.478 0.00 0.00 0.00 3.16
2509 2603 5.128827 GTGATTGATCCTACCTCCACTTACA 59.871 44.000 0.00 0.00 0.00 2.41
2510 2604 5.364157 AGTGATTGATCCTACCTCCACTTAC 59.636 44.000 0.00 0.00 30.42 2.34
2516 2610 5.598830 TCAAGTAGTGATTGATCCTACCTCC 59.401 44.000 12.21 0.00 34.20 4.30
2519 2613 8.561738 TTTTTCAAGTAGTGATTGATCCTACC 57.438 34.615 12.21 0.00 36.60 3.18
2542 2636 7.933033 ACATTGATTAAGGCATGTCAACTTTTT 59.067 29.630 0.00 0.00 33.85 1.94
2543 2637 7.385752 CACATTGATTAAGGCATGTCAACTTTT 59.614 33.333 0.00 0.00 33.85 2.27
2549 2824 5.124297 CAGACACATTGATTAAGGCATGTCA 59.876 40.000 0.00 0.00 38.11 3.58
2550 2825 5.449588 CCAGACACATTGATTAAGGCATGTC 60.450 44.000 0.00 0.00 36.34 3.06
2569 2844 3.307269 GGTGTACCTCTAAAACCCCAGAC 60.307 52.174 0.00 0.00 0.00 3.51
2571 2846 2.640826 TGGTGTACCTCTAAAACCCCAG 59.359 50.000 2.32 0.00 36.82 4.45
2584 2861 5.362105 TCTACATTTGGGTATGGTGTACC 57.638 43.478 0.00 0.00 36.88 3.34
2585 2862 7.051623 TGAATCTACATTTGGGTATGGTGTAC 58.948 38.462 0.00 0.00 0.00 2.90
2597 2874 6.200854 TGCGCAGTAGTATGAATCTACATTTG 59.799 38.462 5.66 0.00 39.86 2.32
2598 2875 6.280643 TGCGCAGTAGTATGAATCTACATTT 58.719 36.000 5.66 0.00 39.86 2.32
2600 2877 5.241728 TCTGCGCAGTAGTATGAATCTACAT 59.758 40.000 34.70 0.00 42.21 2.29
2604 2881 4.363999 GTTCTGCGCAGTAGTATGAATCT 58.636 43.478 34.70 0.00 42.21 2.40
2605 2882 3.180584 CGTTCTGCGCAGTAGTATGAATC 59.819 47.826 34.70 12.49 42.21 2.52
2618 2895 1.709147 ATCAAGGCATCGTTCTGCGC 61.709 55.000 0.00 0.00 43.23 6.09
2620 2897 2.279741 TGTATCAAGGCATCGTTCTGC 58.720 47.619 0.00 0.00 41.53 4.26
2624 2901 6.375455 AGAAAAATCTGTATCAAGGCATCGTT 59.625 34.615 0.00 0.00 0.00 3.85
2626 2903 6.369059 AGAAAAATCTGTATCAAGGCATCG 57.631 37.500 0.00 0.00 0.00 3.84
2631 2908 9.748708 TGAACAAAAGAAAAATCTGTATCAAGG 57.251 29.630 0.00 0.00 0.00 3.61
2654 2931 5.393352 GGCATTCATACACATCTTTGCTGAA 60.393 40.000 0.00 0.00 0.00 3.02
2655 2932 4.096833 GGCATTCATACACATCTTTGCTGA 59.903 41.667 0.00 0.00 0.00 4.26
2656 2933 4.097437 AGGCATTCATACACATCTTTGCTG 59.903 41.667 0.00 0.00 0.00 4.41
2657 2934 4.275810 AGGCATTCATACACATCTTTGCT 58.724 39.130 0.00 0.00 0.00 3.91
2658 2935 4.644103 AGGCATTCATACACATCTTTGC 57.356 40.909 0.00 0.00 0.00 3.68
2672 2949 3.565307 TCACCCATGGAATTAGGCATTC 58.435 45.455 15.22 0.00 40.79 2.67
2673 2950 3.686227 TCACCCATGGAATTAGGCATT 57.314 42.857 15.22 0.00 0.00 3.56
2682 2959 6.371595 AAATAAAATGCTTCACCCATGGAA 57.628 33.333 15.22 0.00 0.00 3.53
2685 2964 4.805192 CGGAAATAAAATGCTTCACCCATG 59.195 41.667 0.00 0.00 0.00 3.66
2690 2969 6.693113 GGATCTTCGGAAATAAAATGCTTCAC 59.307 38.462 0.00 0.00 0.00 3.18
2705 2984 2.735772 GCCAGCTGGGATCTTCGGA 61.736 63.158 33.46 0.00 40.01 4.55
2707 2986 0.465097 AATGCCAGCTGGGATCTTCG 60.465 55.000 36.41 9.07 46.07 3.79
2708 2987 1.772836 AAATGCCAGCTGGGATCTTC 58.227 50.000 36.41 18.44 46.07 2.87
2713 2992 1.826720 GAATGAAAATGCCAGCTGGGA 59.173 47.619 33.46 32.06 40.01 4.37
2716 2995 2.613691 GTGGAATGAAAATGCCAGCTG 58.386 47.619 6.78 6.78 0.00 4.24
2717 2996 1.203052 CGTGGAATGAAAATGCCAGCT 59.797 47.619 0.00 0.00 0.00 4.24
2718 2997 1.067635 ACGTGGAATGAAAATGCCAGC 60.068 47.619 0.00 0.00 0.00 4.85
2723 3002 4.503741 ACAGGAACGTGGAATGAAAATG 57.496 40.909 0.00 0.00 0.00 2.32
2734 3013 3.242712 GTGCAATGAAAAACAGGAACGTG 59.757 43.478 0.00 0.00 0.00 4.49
2736 3015 3.705604 AGTGCAATGAAAAACAGGAACG 58.294 40.909 0.00 0.00 0.00 3.95
2737 3016 5.462068 GGTTAGTGCAATGAAAAACAGGAAC 59.538 40.000 0.00 0.00 0.00 3.62
2748 3027 2.805671 CACGTTGAGGTTAGTGCAATGA 59.194 45.455 0.00 0.00 33.81 2.57
2752 3031 2.206750 GAACACGTTGAGGTTAGTGCA 58.793 47.619 0.00 0.00 38.08 4.57
2756 3035 2.833631 AGGGAACACGTTGAGGTTAG 57.166 50.000 0.00 0.00 0.00 2.34
2763 3042 1.535860 CCTGCAAAAGGGAACACGTTG 60.536 52.381 0.00 0.00 43.15 4.10
2764 3043 0.744281 CCTGCAAAAGGGAACACGTT 59.256 50.000 0.00 0.00 43.15 3.99
2765 3044 2.414750 CCTGCAAAAGGGAACACGT 58.585 52.632 0.00 0.00 43.15 4.49
2831 3110 1.460504 AGCATGCACATCACCAGAAG 58.539 50.000 21.98 0.00 0.00 2.85
2852 3131 5.605534 AGATGCAAGACACGAATAGCTTAT 58.394 37.500 0.00 0.00 0.00 1.73
2853 3132 5.011090 AGATGCAAGACACGAATAGCTTA 57.989 39.130 0.00 0.00 0.00 3.09
2860 3139 2.432206 TCGAAGATGCAAGACACGAA 57.568 45.000 0.00 0.00 0.00 3.85
2883 3162 1.192146 TCCCTAGACACTGGCACACC 61.192 60.000 0.00 0.00 0.00 4.16
2885 3164 1.555075 GATTCCCTAGACACTGGCACA 59.445 52.381 0.00 0.00 0.00 4.57
2887 3166 2.254152 AGATTCCCTAGACACTGGCA 57.746 50.000 0.00 0.00 0.00 4.92
2889 3168 5.059833 GCAATAAGATTCCCTAGACACTGG 58.940 45.833 0.00 0.00 0.00 4.00
2894 3177 8.910351 ATAACAAGCAATAAGATTCCCTAGAC 57.090 34.615 0.00 0.00 0.00 2.59
2900 3183 8.907885 AGGAAGAATAACAAGCAATAAGATTCC 58.092 33.333 0.00 0.00 0.00 3.01
2910 3193 9.770097 CTTCATATAGAGGAAGAATAACAAGCA 57.230 33.333 5.88 0.00 44.54 3.91
2921 3204 9.921637 GTAACTGAATCCTTCATATAGAGGAAG 57.078 37.037 4.81 4.81 42.03 3.46
2923 3206 8.423906 GGTAACTGAATCCTTCATATAGAGGA 57.576 38.462 8.30 8.30 39.30 3.71
2963 3249 5.048083 TCCAAGCAGTTCATCAATAAACACC 60.048 40.000 0.00 0.00 0.00 4.16
2974 3266 1.355381 TCCATGGTCCAAGCAGTTCAT 59.645 47.619 12.58 0.00 0.00 2.57
2987 3279 4.771577 TGCACAATACTTTTCATCCATGGT 59.228 37.500 12.58 0.00 0.00 3.55
2999 3291 6.875948 TCATGTACACTTTGCACAATACTT 57.124 33.333 0.00 0.00 25.97 2.24
3000 3292 6.094048 GGATCATGTACACTTTGCACAATACT 59.906 38.462 0.00 0.00 25.97 2.12
3003 3295 4.766373 TGGATCATGTACACTTTGCACAAT 59.234 37.500 0.00 0.00 25.97 2.71
3041 3333 4.276678 ACAAATATCCACAATCAGCCGATG 59.723 41.667 0.00 0.00 30.13 3.84
3042 3334 4.464008 ACAAATATCCACAATCAGCCGAT 58.536 39.130 0.00 0.00 0.00 4.18
3043 3335 3.884895 ACAAATATCCACAATCAGCCGA 58.115 40.909 0.00 0.00 0.00 5.54
3044 3336 4.353737 CAACAAATATCCACAATCAGCCG 58.646 43.478 0.00 0.00 0.00 5.52
3047 3340 8.984891 TTTAAGCAACAAATATCCACAATCAG 57.015 30.769 0.00 0.00 0.00 2.90
3060 3353 8.654230 TCATTTACAAGCATTTAAGCAACAAA 57.346 26.923 0.00 0.00 36.85 2.83
3064 3357 8.885494 AAGTTCATTTACAAGCATTTAAGCAA 57.115 26.923 0.00 0.00 36.85 3.91
3120 3413 6.995686 TCTTGAACTAGTATTTGCTGGAAACA 59.004 34.615 0.00 0.00 39.59 2.83
3138 3431 9.736023 GAATTTGGGTTGATATATGTCTTGAAC 57.264 33.333 0.89 0.00 0.00 3.18
3153 3446 7.829725 TGAATCTATCACTTGAATTTGGGTTG 58.170 34.615 0.00 0.00 31.50 3.77
3197 3490 1.168714 AGATCTTTTCCAAGCCGTGC 58.831 50.000 0.00 0.00 0.00 5.34
3200 3493 5.048713 ACTTGTTAAGATCTTTTCCAAGCCG 60.049 40.000 25.67 13.98 0.00 5.52
3201 3494 6.016276 TGACTTGTTAAGATCTTTTCCAAGCC 60.016 38.462 25.67 20.46 0.00 4.35
3202 3495 6.970484 TGACTTGTTAAGATCTTTTCCAAGC 58.030 36.000 25.67 21.10 0.00 4.01
3204 3497 8.924511 AGATGACTTGTTAAGATCTTTTCCAA 57.075 30.769 14.36 12.44 0.00 3.53
3215 3514 6.364706 GCGAGATGGATAGATGACTTGTTAAG 59.635 42.308 0.00 0.00 0.00 1.85
3218 3517 4.343526 AGCGAGATGGATAGATGACTTGTT 59.656 41.667 0.00 0.00 0.00 2.83
3220 3519 4.022503 TCAGCGAGATGGATAGATGACTTG 60.023 45.833 0.00 0.00 0.00 3.16
3239 3538 2.674380 CCCTGCTTGGTGGTCAGC 60.674 66.667 0.00 0.00 0.00 4.26
3240 3539 0.178992 TTTCCCTGCTTGGTGGTCAG 60.179 55.000 0.00 0.00 0.00 3.51
3242 3541 1.527433 GCTTTCCCTGCTTGGTGGTC 61.527 60.000 0.00 0.00 0.00 4.02
3243 3542 1.531602 GCTTTCCCTGCTTGGTGGT 60.532 57.895 0.00 0.00 0.00 4.16
3257 3556 0.689623 CAGTCCCAGGTCTCAGCTTT 59.310 55.000 0.00 0.00 0.00 3.51
3285 3590 1.678728 CGTTTCCAGCTAGCCATTCCA 60.679 52.381 12.13 0.00 0.00 3.53
3294 3599 1.550130 CCACCCTCCGTTTCCAGCTA 61.550 60.000 0.00 0.00 0.00 3.32
3299 3604 1.192803 AGAGTCCACCCTCCGTTTCC 61.193 60.000 0.00 0.00 31.53 3.13
3302 3607 1.152312 ACAGAGTCCACCCTCCGTT 60.152 57.895 0.00 0.00 31.53 4.44
3321 3626 0.744874 TAGCGGACTACAGCATCCAC 59.255 55.000 0.00 0.00 39.53 4.02
3323 3628 0.315568 CCTAGCGGACTACAGCATCC 59.684 60.000 0.00 0.00 39.53 3.51
3328 3633 1.038130 AGCACCCTAGCGGACTACAG 61.038 60.000 4.45 0.00 40.15 2.74
3337 3642 4.840005 GGACGGCAGCACCCTAGC 62.840 72.222 0.00 0.00 33.26 3.42
3363 3668 0.673956 GCCTCTTCTTCAACGGGACC 60.674 60.000 0.00 0.00 0.00 4.46
3384 3689 1.571955 GCATTCCCCCTTCCAAACAT 58.428 50.000 0.00 0.00 0.00 2.71
3387 3692 4.885709 GGCATTCCCCCTTCCAAA 57.114 55.556 0.00 0.00 0.00 3.28
3399 3704 1.153369 CCACGATGAGACGGGCATT 60.153 57.895 0.00 0.00 35.18 3.56
3450 3755 1.645710 CCTGTGTTAGGGTCTGGACT 58.354 55.000 0.67 0.00 43.33 3.85
3460 3765 2.744202 GCAAGACCATCACCTGTGTTAG 59.256 50.000 0.00 0.00 0.00 2.34
3467 3772 2.185310 GACCGGCAAGACCATCACCT 62.185 60.000 0.00 0.00 39.03 4.00
3468 3773 1.745489 GACCGGCAAGACCATCACC 60.745 63.158 0.00 0.00 39.03 4.02
3483 3788 5.220416 GCGTATCTACATCAACACTTTGACC 60.220 44.000 0.00 0.00 44.66 4.02
3484 3789 5.347635 TGCGTATCTACATCAACACTTTGAC 59.652 40.000 0.00 0.00 44.66 3.18
3503 3808 1.870580 CGAACAGAAACAGGGTGCGTA 60.871 52.381 0.00 0.00 0.00 4.42
3519 3824 2.269172 GTTAGTTCTAGGCAGCCGAAC 58.731 52.381 19.52 19.52 37.80 3.95
3537 3842 6.547141 TGAAAAGTGAGAATGTCCTTCATGTT 59.453 34.615 0.00 0.00 36.81 2.71
3542 3847 6.566197 ACATGAAAAGTGAGAATGTCCTTC 57.434 37.500 0.00 0.00 0.00 3.46
3543 3848 5.180117 CGACATGAAAAGTGAGAATGTCCTT 59.820 40.000 0.00 0.00 42.59 3.36
3550 3855 7.544566 GGATTACTACGACATGAAAAGTGAGAA 59.455 37.037 0.00 0.00 0.00 2.87
3552 3857 6.811665 TGGATTACTACGACATGAAAAGTGAG 59.188 38.462 0.00 0.00 0.00 3.51
3565 3870 2.092429 ACCGTACCCTGGATTACTACGA 60.092 50.000 0.00 0.00 33.59 3.43
3584 3889 1.680249 GGAAGTTGCTGGAGGATGACC 60.680 57.143 0.00 0.00 0.00 4.02
3585 3890 1.280421 AGGAAGTTGCTGGAGGATGAC 59.720 52.381 0.00 0.00 0.00 3.06
3604 3909 3.520290 TCAGCGGTTGTTCTATGGTAG 57.480 47.619 0.00 0.00 0.00 3.18
3693 3998 2.093764 CAGGACCATCACTCTTGAGGTC 60.094 54.545 0.00 0.00 42.98 3.85
3699 4004 2.777536 TGGCAGGACCATCACTCTT 58.222 52.632 0.00 0.00 46.36 2.85
3743 4048 2.881074 TGCTGATCTACGTCTTGAAGC 58.119 47.619 0.00 0.00 0.00 3.86
3780 4085 0.915872 ATGGCATCCAGAGTGGGTCA 60.916 55.000 0.00 0.00 38.32 4.02
3783 4088 2.374504 AGATTATGGCATCCAGAGTGGG 59.625 50.000 1.65 0.00 38.32 4.61
3790 4095 2.636647 TTCGCAGATTATGGCATCCA 57.363 45.000 1.65 0.00 34.69 3.41
3796 4101 3.489785 GGTCGTACTTTCGCAGATTATGG 59.510 47.826 0.00 0.00 35.04 2.74
3804 4109 2.431260 GCCGGTCGTACTTTCGCA 60.431 61.111 1.90 0.00 0.00 5.10
3807 4112 1.153686 GGAGGCCGGTCGTACTTTC 60.154 63.158 1.90 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.