Multiple sequence alignment - TraesCS5B01G291300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G291300 | chr5B | 100.000 | 3465 | 0 | 0 | 1 | 3465 | 476918745 | 476915281 | 0.000000e+00 | 6399.0 |
1 | TraesCS5B01G291300 | chr5B | 86.275 | 969 | 122 | 6 | 906 | 1864 | 476907722 | 476906755 | 0.000000e+00 | 1042.0 |
2 | TraesCS5B01G291300 | chr5B | 82.065 | 920 | 124 | 16 | 1253 | 2134 | 477984386 | 477985302 | 0.000000e+00 | 747.0 |
3 | TraesCS5B01G291300 | chr5B | 86.815 | 675 | 74 | 8 | 1879 | 2541 | 476906705 | 476906034 | 0.000000e+00 | 739.0 |
4 | TraesCS5B01G291300 | chr5B | 81.878 | 607 | 62 | 12 | 1939 | 2541 | 476903000 | 476902438 | 5.240000e-128 | 468.0 |
5 | TraesCS5B01G291300 | chr5B | 80.899 | 178 | 25 | 7 | 205 | 382 | 476908824 | 476908656 | 7.800000e-27 | 132.0 |
6 | TraesCS5B01G291300 | chr5D | 95.303 | 1022 | 46 | 2 | 862 | 1882 | 396947045 | 396946025 | 0.000000e+00 | 1620.0 |
7 | TraesCS5B01G291300 | chr5D | 94.753 | 667 | 31 | 2 | 1879 | 2541 | 396945999 | 396945333 | 0.000000e+00 | 1035.0 |
8 | TraesCS5B01G291300 | chr5D | 77.200 | 1614 | 318 | 40 | 944 | 2528 | 397929786 | 397931378 | 0.000000e+00 | 896.0 |
9 | TraesCS5B01G291300 | chr5D | 95.415 | 349 | 11 | 2 | 386 | 730 | 396947563 | 396947216 | 5.050000e-153 | 551.0 |
10 | TraesCS5B01G291300 | chr5D | 78.228 | 914 | 149 | 29 | 1528 | 2400 | 397941409 | 397942313 | 1.090000e-149 | 540.0 |
11 | TraesCS5B01G291300 | chr5D | 90.351 | 228 | 16 | 4 | 164 | 391 | 396947830 | 396947609 | 9.400000e-76 | 294.0 |
12 | TraesCS5B01G291300 | chr5D | 81.404 | 285 | 45 | 4 | 1253 | 1531 | 397940973 | 397941255 | 3.480000e-55 | 226.0 |
13 | TraesCS5B01G291300 | chr3B | 91.251 | 903 | 48 | 11 | 2590 | 3465 | 548041910 | 548041012 | 0.000000e+00 | 1201.0 |
14 | TraesCS5B01G291300 | chr3B | 88.759 | 427 | 24 | 10 | 3063 | 3465 | 31525959 | 31525533 | 5.160000e-138 | 501.0 |
15 | TraesCS5B01G291300 | chr1B | 89.845 | 906 | 56 | 13 | 2590 | 3465 | 542689309 | 542690208 | 0.000000e+00 | 1131.0 |
16 | TraesCS5B01G291300 | chr1B | 94.294 | 333 | 19 | 0 | 3133 | 3465 | 647181051 | 647180719 | 8.580000e-141 | 510.0 |
17 | TraesCS5B01G291300 | chr1B | 88.837 | 430 | 24 | 13 | 3060 | 3465 | 56995202 | 56995631 | 1.110000e-139 | 507.0 |
18 | TraesCS5B01G291300 | chr7B | 90.593 | 776 | 48 | 12 | 2699 | 3450 | 551900827 | 551900053 | 0.000000e+00 | 1005.0 |
19 | TraesCS5B01G291300 | chr7B | 88.328 | 317 | 33 | 2 | 2695 | 3008 | 60337325 | 60337010 | 9.080000e-101 | 377.0 |
20 | TraesCS5B01G291300 | chr5A | 85.582 | 971 | 109 | 20 | 906 | 1864 | 502501084 | 502500133 | 0.000000e+00 | 989.0 |
21 | TraesCS5B01G291300 | chr5A | 77.170 | 1590 | 309 | 37 | 968 | 2528 | 503050094 | 503051658 | 0.000000e+00 | 876.0 |
22 | TraesCS5B01G291300 | chr5A | 79.926 | 1076 | 168 | 25 | 1367 | 2400 | 503060801 | 503061870 | 0.000000e+00 | 747.0 |
23 | TraesCS5B01G291300 | chr5A | 84.663 | 652 | 89 | 5 | 1879 | 2520 | 502500083 | 502499433 | 1.050000e-179 | 640.0 |
24 | TraesCS5B01G291300 | chr1D | 89.429 | 473 | 38 | 5 | 2590 | 3057 | 448612148 | 448612613 | 1.390000e-163 | 586.0 |
25 | TraesCS5B01G291300 | chr1D | 88.865 | 458 | 27 | 8 | 2589 | 3042 | 76086246 | 76085809 | 3.040000e-150 | 542.0 |
26 | TraesCS5B01G291300 | chr1D | 93.694 | 333 | 21 | 0 | 3133 | 3465 | 25674751 | 25674419 | 1.860000e-137 | 499.0 |
27 | TraesCS5B01G291300 | chr1D | 88.056 | 427 | 27 | 1 | 3063 | 3465 | 11318496 | 11318070 | 5.200000e-133 | 484.0 |
28 | TraesCS5B01G291300 | chr1D | 89.024 | 246 | 18 | 2 | 2815 | 3057 | 447476163 | 447475924 | 2.610000e-76 | 296.0 |
29 | TraesCS5B01G291300 | chrUn | 92.308 | 403 | 22 | 2 | 3063 | 3465 | 24306690 | 24306297 | 6.490000e-157 | 564.0 |
30 | TraesCS5B01G291300 | chr6B | 89.041 | 438 | 35 | 8 | 2589 | 3021 | 476121192 | 476120763 | 6.580000e-147 | 531.0 |
31 | TraesCS5B01G291300 | chr4B | 88.372 | 430 | 26 | 6 | 3060 | 3465 | 132344112 | 132344541 | 2.400000e-136 | 496.0 |
32 | TraesCS5B01G291300 | chr4B | 93.393 | 333 | 22 | 0 | 3133 | 3465 | 2506914 | 2507246 | 8.640000e-136 | 494.0 |
33 | TraesCS5B01G291300 | chr4B | 86.667 | 420 | 32 | 8 | 3063 | 3458 | 58751149 | 58751568 | 8.820000e-121 | 444.0 |
34 | TraesCS5B01G291300 | chr7D | 88.140 | 430 | 27 | 7 | 3060 | 3465 | 108353597 | 108354026 | 1.120000e-134 | 490.0 |
35 | TraesCS5B01G291300 | chr7D | 87.907 | 430 | 28 | 6 | 3060 | 3465 | 108379127 | 108379556 | 5.200000e-133 | 484.0 |
36 | TraesCS5B01G291300 | chr7D | 92.793 | 333 | 24 | 0 | 3133 | 3465 | 20004022 | 20004354 | 1.870000e-132 | 483.0 |
37 | TraesCS5B01G291300 | chr7D | 87.089 | 426 | 31 | 9 | 3060 | 3461 | 108375086 | 108375511 | 8.760000e-126 | 460.0 |
38 | TraesCS5B01G291300 | chr7D | 90.909 | 44 | 4 | 0 | 588 | 631 | 123223903 | 123223860 | 3.730000e-05 | 60.2 |
39 | TraesCS5B01G291300 | chr6D | 93.313 | 329 | 22 | 0 | 3137 | 3465 | 12555681 | 12555353 | 1.450000e-133 | 486.0 |
40 | TraesCS5B01G291300 | chr6D | 93.617 | 94 | 3 | 2 | 770 | 861 | 217177387 | 217177295 | 1.680000e-28 | 137.0 |
41 | TraesCS5B01G291300 | chr7A | 86.105 | 439 | 39 | 15 | 2589 | 3021 | 627012012 | 627012434 | 1.470000e-123 | 453.0 |
42 | TraesCS5B01G291300 | chr7A | 90.159 | 315 | 24 | 6 | 2702 | 3012 | 627049790 | 627050101 | 1.500000e-108 | 403.0 |
43 | TraesCS5B01G291300 | chr4A | 91.900 | 321 | 26 | 0 | 3145 | 3465 | 625258635 | 625258315 | 1.900000e-122 | 449.0 |
44 | TraesCS5B01G291300 | chr3A | 78.992 | 119 | 11 | 2 | 528 | 632 | 582348622 | 582348740 | 6.210000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G291300 | chr5B | 476915281 | 476918745 | 3464 | True | 6399.00 | 6399 | 100.00000 | 1 | 3465 | 1 | chr5B.!!$R1 | 3464 |
1 | TraesCS5B01G291300 | chr5B | 477984386 | 477985302 | 916 | False | 747.00 | 747 | 82.06500 | 1253 | 2134 | 1 | chr5B.!!$F1 | 881 |
2 | TraesCS5B01G291300 | chr5B | 476902438 | 476908824 | 6386 | True | 595.25 | 1042 | 83.96675 | 205 | 2541 | 4 | chr5B.!!$R2 | 2336 |
3 | TraesCS5B01G291300 | chr5D | 397929786 | 397931378 | 1592 | False | 896.00 | 896 | 77.20000 | 944 | 2528 | 1 | chr5D.!!$F1 | 1584 |
4 | TraesCS5B01G291300 | chr5D | 396945333 | 396947830 | 2497 | True | 875.00 | 1620 | 93.95550 | 164 | 2541 | 4 | chr5D.!!$R1 | 2377 |
5 | TraesCS5B01G291300 | chr5D | 397940973 | 397942313 | 1340 | False | 383.00 | 540 | 79.81600 | 1253 | 2400 | 2 | chr5D.!!$F2 | 1147 |
6 | TraesCS5B01G291300 | chr3B | 548041012 | 548041910 | 898 | True | 1201.00 | 1201 | 91.25100 | 2590 | 3465 | 1 | chr3B.!!$R2 | 875 |
7 | TraesCS5B01G291300 | chr1B | 542689309 | 542690208 | 899 | False | 1131.00 | 1131 | 89.84500 | 2590 | 3465 | 1 | chr1B.!!$F2 | 875 |
8 | TraesCS5B01G291300 | chr7B | 551900053 | 551900827 | 774 | True | 1005.00 | 1005 | 90.59300 | 2699 | 3450 | 1 | chr7B.!!$R2 | 751 |
9 | TraesCS5B01G291300 | chr5A | 503050094 | 503051658 | 1564 | False | 876.00 | 876 | 77.17000 | 968 | 2528 | 1 | chr5A.!!$F1 | 1560 |
10 | TraesCS5B01G291300 | chr5A | 502499433 | 502501084 | 1651 | True | 814.50 | 989 | 85.12250 | 906 | 2520 | 2 | chr5A.!!$R1 | 1614 |
11 | TraesCS5B01G291300 | chr5A | 503060801 | 503061870 | 1069 | False | 747.00 | 747 | 79.92600 | 1367 | 2400 | 1 | chr5A.!!$F2 | 1033 |
12 | TraesCS5B01G291300 | chr7D | 108375086 | 108379556 | 4470 | False | 472.00 | 484 | 87.49800 | 3060 | 3465 | 2 | chr7D.!!$F3 | 405 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
59 | 60 | 0.035458 | CAGGGAAGGAACTCGCAGTT | 59.965 | 55.0 | 1.82 | 1.82 | 41.95 | 3.16 | F |
782 | 1276 | 0.104409 | ACACTCCCAACCCCTTCTCT | 60.104 | 55.0 | 0.00 | 0.00 | 0.00 | 3.10 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1305 | 1880 | 0.250234 | TCTCAGGAATCGCAAGGGTG | 59.750 | 55.0 | 0.0 | 0.0 | 38.47 | 4.61 | R |
2566 | 6999 | 0.399233 | CGGGAGGAGAGAGGGGAATT | 60.399 | 60.0 | 0.0 | 0.0 | 0.00 | 2.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.851805 | CGAGATGATGGTTCTCACGA | 57.148 | 50.000 | 0.00 | 0.00 | 39.69 | 4.35 |
20 | 21 | 3.361794 | CGAGATGATGGTTCTCACGAT | 57.638 | 47.619 | 0.00 | 0.00 | 39.69 | 3.73 |
21 | 22 | 4.489679 | CGAGATGATGGTTCTCACGATA | 57.510 | 45.455 | 0.00 | 0.00 | 39.69 | 2.92 |
22 | 23 | 4.471373 | CGAGATGATGGTTCTCACGATAG | 58.529 | 47.826 | 0.00 | 0.00 | 39.69 | 2.08 |
23 | 24 | 4.233789 | GAGATGATGGTTCTCACGATAGC | 58.766 | 47.826 | 0.00 | 0.00 | 39.54 | 2.97 |
24 | 25 | 3.638627 | AGATGATGGTTCTCACGATAGCA | 59.361 | 43.478 | 0.00 | 0.00 | 42.67 | 3.49 |
25 | 26 | 3.885724 | TGATGGTTCTCACGATAGCAA | 57.114 | 42.857 | 0.00 | 0.00 | 42.67 | 3.91 |
26 | 27 | 4.200838 | TGATGGTTCTCACGATAGCAAA | 57.799 | 40.909 | 0.00 | 0.00 | 42.67 | 3.68 |
27 | 28 | 4.574892 | TGATGGTTCTCACGATAGCAAAA | 58.425 | 39.130 | 0.00 | 0.00 | 42.67 | 2.44 |
28 | 29 | 4.631377 | TGATGGTTCTCACGATAGCAAAAG | 59.369 | 41.667 | 0.00 | 0.00 | 42.67 | 2.27 |
29 | 30 | 4.265904 | TGGTTCTCACGATAGCAAAAGA | 57.734 | 40.909 | 0.00 | 0.00 | 42.67 | 2.52 |
30 | 31 | 4.637276 | TGGTTCTCACGATAGCAAAAGAA | 58.363 | 39.130 | 0.00 | 0.00 | 42.67 | 2.52 |
31 | 32 | 4.690748 | TGGTTCTCACGATAGCAAAAGAAG | 59.309 | 41.667 | 0.00 | 0.00 | 42.67 | 2.85 |
32 | 33 | 4.093556 | GGTTCTCACGATAGCAAAAGAAGG | 59.906 | 45.833 | 0.00 | 0.00 | 42.67 | 3.46 |
33 | 34 | 3.861840 | TCTCACGATAGCAAAAGAAGGG | 58.138 | 45.455 | 0.00 | 0.00 | 42.67 | 3.95 |
34 | 35 | 2.939103 | CTCACGATAGCAAAAGAAGGGG | 59.061 | 50.000 | 0.00 | 0.00 | 42.67 | 4.79 |
35 | 36 | 2.017049 | CACGATAGCAAAAGAAGGGGG | 58.983 | 52.381 | 0.00 | 0.00 | 42.67 | 5.40 |
36 | 37 | 1.633945 | ACGATAGCAAAAGAAGGGGGT | 59.366 | 47.619 | 0.00 | 0.00 | 42.67 | 4.95 |
37 | 38 | 2.289565 | CGATAGCAAAAGAAGGGGGTC | 58.710 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
38 | 39 | 2.092914 | CGATAGCAAAAGAAGGGGGTCT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
39 | 40 | 3.622455 | CGATAGCAAAAGAAGGGGGTCTT | 60.622 | 47.826 | 0.00 | 0.00 | 39.60 | 3.01 |
40 | 41 | 7.829962 | ACGATAGCAAAAGAAGGGGGTCTTC | 62.830 | 48.000 | 0.00 | 0.00 | 46.11 | 2.87 |
47 | 48 | 2.792635 | AAGGGGGTCTTCAGGGAAG | 58.207 | 57.895 | 0.00 | 0.00 | 40.65 | 3.46 |
48 | 49 | 0.846870 | AAGGGGGTCTTCAGGGAAGG | 60.847 | 60.000 | 6.17 | 0.00 | 39.82 | 3.46 |
49 | 50 | 1.229853 | GGGGGTCTTCAGGGAAGGA | 60.230 | 63.158 | 6.17 | 0.00 | 39.82 | 3.36 |
50 | 51 | 0.845102 | GGGGGTCTTCAGGGAAGGAA | 60.845 | 60.000 | 6.17 | 0.00 | 39.82 | 3.36 |
51 | 52 | 0.328592 | GGGGTCTTCAGGGAAGGAAC | 59.671 | 60.000 | 6.17 | 0.00 | 39.82 | 3.62 |
53 | 54 | 1.279558 | GGGTCTTCAGGGAAGGAACTC | 59.720 | 57.143 | 6.17 | 0.00 | 38.49 | 3.01 |
54 | 55 | 1.066787 | GGTCTTCAGGGAAGGAACTCG | 60.067 | 57.143 | 6.17 | 0.00 | 38.49 | 4.18 |
55 | 56 | 0.608640 | TCTTCAGGGAAGGAACTCGC | 59.391 | 55.000 | 6.17 | 0.00 | 38.49 | 5.03 |
56 | 57 | 0.321671 | CTTCAGGGAAGGAACTCGCA | 59.678 | 55.000 | 0.00 | 0.00 | 38.49 | 5.10 |
57 | 58 | 0.321671 | TTCAGGGAAGGAACTCGCAG | 59.678 | 55.000 | 0.00 | 0.00 | 38.49 | 5.18 |
58 | 59 | 0.832135 | TCAGGGAAGGAACTCGCAGT | 60.832 | 55.000 | 0.00 | 0.00 | 38.49 | 4.40 |
59 | 60 | 0.035458 | CAGGGAAGGAACTCGCAGTT | 59.965 | 55.000 | 1.82 | 1.82 | 41.95 | 3.16 |
66 | 67 | 2.533318 | GAACTCGCAGTTCCACAGG | 58.467 | 57.895 | 14.47 | 0.00 | 46.68 | 4.00 |
67 | 68 | 0.249911 | GAACTCGCAGTTCCACAGGT | 60.250 | 55.000 | 14.47 | 0.00 | 46.68 | 4.00 |
68 | 69 | 1.000506 | GAACTCGCAGTTCCACAGGTA | 59.999 | 52.381 | 14.47 | 0.00 | 46.68 | 3.08 |
69 | 70 | 1.045407 | ACTCGCAGTTCCACAGGTAA | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
70 | 71 | 1.270147 | ACTCGCAGTTCCACAGGTAAC | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 2.50 |
71 | 72 | 0.753867 | TCGCAGTTCCACAGGTAACA | 59.246 | 50.000 | 0.00 | 0.00 | 41.41 | 2.41 |
72 | 73 | 0.865769 | CGCAGTTCCACAGGTAACAC | 59.134 | 55.000 | 0.00 | 0.00 | 41.41 | 3.32 |
73 | 74 | 1.808512 | CGCAGTTCCACAGGTAACACA | 60.809 | 52.381 | 0.00 | 0.00 | 41.41 | 3.72 |
74 | 75 | 2.504367 | GCAGTTCCACAGGTAACACAT | 58.496 | 47.619 | 0.00 | 0.00 | 41.41 | 3.21 |
75 | 76 | 2.484264 | GCAGTTCCACAGGTAACACATC | 59.516 | 50.000 | 0.00 | 0.00 | 41.41 | 3.06 |
76 | 77 | 3.074412 | CAGTTCCACAGGTAACACATCC | 58.926 | 50.000 | 0.00 | 0.00 | 41.41 | 3.51 |
77 | 78 | 2.979678 | AGTTCCACAGGTAACACATCCT | 59.020 | 45.455 | 0.00 | 0.00 | 41.41 | 3.24 |
78 | 79 | 3.394606 | AGTTCCACAGGTAACACATCCTT | 59.605 | 43.478 | 0.00 | 0.00 | 41.41 | 3.36 |
79 | 80 | 3.695830 | TCCACAGGTAACACATCCTTC | 57.304 | 47.619 | 0.00 | 0.00 | 41.41 | 3.46 |
80 | 81 | 2.304761 | TCCACAGGTAACACATCCTTCC | 59.695 | 50.000 | 0.00 | 0.00 | 41.41 | 3.46 |
81 | 82 | 2.039746 | CCACAGGTAACACATCCTTCCA | 59.960 | 50.000 | 0.00 | 0.00 | 41.41 | 3.53 |
82 | 83 | 3.308402 | CCACAGGTAACACATCCTTCCAT | 60.308 | 47.826 | 0.00 | 0.00 | 41.41 | 3.41 |
83 | 84 | 3.691118 | CACAGGTAACACATCCTTCCATG | 59.309 | 47.826 | 0.00 | 0.00 | 41.41 | 3.66 |
84 | 85 | 3.587061 | ACAGGTAACACATCCTTCCATGA | 59.413 | 43.478 | 0.00 | 0.00 | 41.41 | 3.07 |
85 | 86 | 4.042809 | ACAGGTAACACATCCTTCCATGAA | 59.957 | 41.667 | 0.00 | 0.00 | 41.41 | 2.57 |
86 | 87 | 5.195940 | CAGGTAACACATCCTTCCATGAAT | 58.804 | 41.667 | 0.00 | 0.00 | 41.41 | 2.57 |
87 | 88 | 5.653769 | CAGGTAACACATCCTTCCATGAATT | 59.346 | 40.000 | 0.00 | 0.00 | 41.41 | 2.17 |
88 | 89 | 6.153340 | CAGGTAACACATCCTTCCATGAATTT | 59.847 | 38.462 | 0.00 | 0.00 | 41.41 | 1.82 |
89 | 90 | 6.153340 | AGGTAACACATCCTTCCATGAATTTG | 59.847 | 38.462 | 0.00 | 0.00 | 41.41 | 2.32 |
90 | 91 | 6.152661 | GGTAACACATCCTTCCATGAATTTGA | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
91 | 92 | 6.669125 | AACACATCCTTCCATGAATTTGAA | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
92 | 93 | 6.862469 | ACACATCCTTCCATGAATTTGAAT | 57.138 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
93 | 94 | 6.636705 | ACACATCCTTCCATGAATTTGAATG | 58.363 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
94 | 95 | 6.046593 | CACATCCTTCCATGAATTTGAATGG | 58.953 | 40.000 | 0.00 | 8.68 | 44.06 | 3.16 |
95 | 96 | 4.741321 | TCCTTCCATGAATTTGAATGGC | 57.259 | 40.909 | 9.71 | 0.00 | 42.67 | 4.40 |
96 | 97 | 4.095211 | TCCTTCCATGAATTTGAATGGCA | 58.905 | 39.130 | 9.71 | 0.00 | 42.67 | 4.92 |
97 | 98 | 4.081531 | TCCTTCCATGAATTTGAATGGCAC | 60.082 | 41.667 | 9.71 | 0.00 | 42.67 | 5.01 |
110 | 111 | 3.238232 | TGGCACAAGCTGATCTGAC | 57.762 | 52.632 | 3.42 | 0.00 | 41.70 | 3.51 |
111 | 112 | 0.671472 | TGGCACAAGCTGATCTGACG | 60.671 | 55.000 | 3.42 | 0.00 | 41.70 | 4.35 |
112 | 113 | 0.390340 | GGCACAAGCTGATCTGACGA | 60.390 | 55.000 | 3.42 | 0.00 | 41.70 | 4.20 |
113 | 114 | 0.718343 | GCACAAGCTGATCTGACGAC | 59.282 | 55.000 | 3.42 | 0.00 | 37.91 | 4.34 |
114 | 115 | 1.354040 | CACAAGCTGATCTGACGACC | 58.646 | 55.000 | 3.42 | 0.00 | 0.00 | 4.79 |
115 | 116 | 1.067283 | CACAAGCTGATCTGACGACCT | 60.067 | 52.381 | 3.42 | 0.00 | 0.00 | 3.85 |
116 | 117 | 2.164422 | CACAAGCTGATCTGACGACCTA | 59.836 | 50.000 | 3.42 | 0.00 | 0.00 | 3.08 |
117 | 118 | 3.027412 | ACAAGCTGATCTGACGACCTAT | 58.973 | 45.455 | 3.42 | 0.00 | 0.00 | 2.57 |
118 | 119 | 3.181482 | ACAAGCTGATCTGACGACCTATG | 60.181 | 47.826 | 3.42 | 0.00 | 0.00 | 2.23 |
119 | 120 | 1.339610 | AGCTGATCTGACGACCTATGC | 59.660 | 52.381 | 3.42 | 0.00 | 0.00 | 3.14 |
120 | 121 | 1.339610 | GCTGATCTGACGACCTATGCT | 59.660 | 52.381 | 3.42 | 0.00 | 0.00 | 3.79 |
121 | 122 | 2.554462 | GCTGATCTGACGACCTATGCTA | 59.446 | 50.000 | 3.42 | 0.00 | 0.00 | 3.49 |
122 | 123 | 3.365868 | GCTGATCTGACGACCTATGCTAG | 60.366 | 52.174 | 3.42 | 0.00 | 0.00 | 3.42 |
123 | 124 | 2.554462 | TGATCTGACGACCTATGCTAGC | 59.446 | 50.000 | 8.10 | 8.10 | 0.00 | 3.42 |
124 | 125 | 2.350057 | TCTGACGACCTATGCTAGCT | 57.650 | 50.000 | 17.23 | 4.07 | 0.00 | 3.32 |
125 | 126 | 3.487120 | TCTGACGACCTATGCTAGCTA | 57.513 | 47.619 | 17.23 | 2.58 | 0.00 | 3.32 |
126 | 127 | 3.403968 | TCTGACGACCTATGCTAGCTAG | 58.596 | 50.000 | 16.84 | 16.84 | 0.00 | 3.42 |
166 | 167 | 8.508800 | TTTACTGTATTTATTTTTGCGTGTGG | 57.491 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
167 | 168 | 6.079424 | ACTGTATTTATTTTTGCGTGTGGT | 57.921 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
180 | 181 | 1.089920 | GTGTGGTCCTGCTGCATTAG | 58.910 | 55.000 | 1.31 | 0.00 | 0.00 | 1.73 |
192 | 193 | 5.182001 | CCTGCTGCATTAGTACTTCTGTTTT | 59.818 | 40.000 | 1.31 | 0.00 | 0.00 | 2.43 |
209 | 210 | 6.991938 | TCTGTTTTATTCCAATTGTTCCAGG | 58.008 | 36.000 | 4.43 | 0.00 | 0.00 | 4.45 |
210 | 211 | 6.780031 | TCTGTTTTATTCCAATTGTTCCAGGA | 59.220 | 34.615 | 4.43 | 0.00 | 0.00 | 3.86 |
213 | 214 | 8.093927 | TGTTTTATTCCAATTGTTCCAGGATTC | 58.906 | 33.333 | 4.43 | 0.00 | 0.00 | 2.52 |
214 | 215 | 7.789202 | TTTATTCCAATTGTTCCAGGATTCA | 57.211 | 32.000 | 4.43 | 0.00 | 0.00 | 2.57 |
215 | 216 | 7.976414 | TTATTCCAATTGTTCCAGGATTCAT | 57.024 | 32.000 | 4.43 | 0.00 | 0.00 | 2.57 |
216 | 217 | 5.920193 | TTCCAATTGTTCCAGGATTCATC | 57.080 | 39.130 | 4.43 | 0.00 | 0.00 | 2.92 |
217 | 218 | 5.197224 | TCCAATTGTTCCAGGATTCATCT | 57.803 | 39.130 | 4.43 | 0.00 | 0.00 | 2.90 |
218 | 219 | 5.195940 | TCCAATTGTTCCAGGATTCATCTC | 58.804 | 41.667 | 4.43 | 0.00 | 0.00 | 2.75 |
219 | 220 | 4.340381 | CCAATTGTTCCAGGATTCATCTCC | 59.660 | 45.833 | 4.43 | 0.00 | 35.37 | 3.71 |
220 | 221 | 2.988010 | TGTTCCAGGATTCATCTCCG | 57.012 | 50.000 | 0.00 | 0.00 | 40.46 | 4.63 |
221 | 222 | 1.134401 | TGTTCCAGGATTCATCTCCGC | 60.134 | 52.381 | 0.00 | 0.00 | 40.46 | 5.54 |
223 | 224 | 1.043116 | TCCAGGATTCATCTCCGCGT | 61.043 | 55.000 | 4.92 | 0.00 | 40.46 | 6.01 |
267 | 268 | 8.495949 | CGAGTCTTGTTAAAGAGCAGAAAATTA | 58.504 | 33.333 | 0.00 | 0.00 | 43.13 | 1.40 |
291 | 292 | 3.141398 | TGTTCTGTTCCAGATTCAGTGC | 58.859 | 45.455 | 0.00 | 0.00 | 40.39 | 4.40 |
365 | 366 | 6.590068 | TCAGATTCTGGAGATTTCTGATTCC | 58.410 | 40.000 | 13.59 | 0.00 | 38.07 | 3.01 |
382 | 383 | 2.380064 | TCCCATGTTCAACAGCCTTT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.11 |
384 | 385 | 1.001181 | CCCATGTTCAACAGCCTTTGG | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
433 | 507 | 6.923508 | CACAAACTTTCTCCAGATTAAAACCC | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
435 | 509 | 6.650427 | AACTTTCTCCAGATTAAAACCCAC | 57.350 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
483 | 557 | 5.273944 | GTCGCAAATGAACTTCAGAACTTT | 58.726 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
573 | 651 | 8.894768 | AATCGAAGTTCTAGGATTTCCATAAG | 57.105 | 34.615 | 0.56 | 0.00 | 38.89 | 1.73 |
620 | 698 | 8.594881 | AATCCACAAAGATCTACGATATCAAC | 57.405 | 34.615 | 3.12 | 0.00 | 0.00 | 3.18 |
625 | 703 | 9.684448 | CACAAAGATCTACGATATCAACTATGT | 57.316 | 33.333 | 3.12 | 0.00 | 0.00 | 2.29 |
672 | 780 | 8.923683 | GGTAGTAGAACTTAGTAAAGCTTTGTG | 58.076 | 37.037 | 22.02 | 9.09 | 36.05 | 3.33 |
709 | 1014 | 7.543868 | CAGTTGTCAGAGGTAGTAAATCTTCTG | 59.456 | 40.741 | 0.00 | 0.00 | 32.70 | 3.02 |
735 | 1040 | 7.953158 | TCTTAGTGATCAAAAGTTGTCAGAG | 57.047 | 36.000 | 15.24 | 0.00 | 0.00 | 3.35 |
736 | 1041 | 6.931281 | TCTTAGTGATCAAAAGTTGTCAGAGG | 59.069 | 38.462 | 15.24 | 0.00 | 0.00 | 3.69 |
738 | 1043 | 6.174720 | AGTGATCAAAAGTTGTCAGAGGTA | 57.825 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
740 | 1045 | 5.992217 | GTGATCAAAAGTTGTCAGAGGTAGT | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
741 | 1046 | 5.991606 | TGATCAAAAGTTGTCAGAGGTAGTG | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
769 | 1263 | 5.005779 | CGCTATTGTTGACTCATAACACTCC | 59.994 | 44.000 | 0.00 | 0.00 | 37.73 | 3.85 |
770 | 1264 | 5.294552 | GCTATTGTTGACTCATAACACTCCC | 59.705 | 44.000 | 0.00 | 0.00 | 37.73 | 4.30 |
771 | 1265 | 4.698201 | TTGTTGACTCATAACACTCCCA | 57.302 | 40.909 | 0.00 | 0.00 | 37.73 | 4.37 |
773 | 1267 | 4.385825 | TGTTGACTCATAACACTCCCAAC | 58.614 | 43.478 | 0.00 | 0.00 | 33.43 | 3.77 |
774 | 1268 | 3.695830 | TGACTCATAACACTCCCAACC | 57.304 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
775 | 1269 | 2.304761 | TGACTCATAACACTCCCAACCC | 59.695 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
776 | 1270 | 1.633945 | ACTCATAACACTCCCAACCCC | 59.366 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
778 | 1272 | 2.308866 | CTCATAACACTCCCAACCCCTT | 59.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
779 | 1273 | 2.307686 | TCATAACACTCCCAACCCCTTC | 59.692 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
780 | 1274 | 2.127651 | TAACACTCCCAACCCCTTCT | 57.872 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
781 | 1275 | 0.771755 | AACACTCCCAACCCCTTCTC | 59.228 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
782 | 1276 | 0.104409 | ACACTCCCAACCCCTTCTCT | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
783 | 1277 | 1.068121 | CACTCCCAACCCCTTCTCTT | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
784 | 1278 | 1.425448 | CACTCCCAACCCCTTCTCTTT | 59.575 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
785 | 1279 | 2.144450 | ACTCCCAACCCCTTCTCTTTT | 58.856 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
786 | 1280 | 2.518407 | ACTCCCAACCCCTTCTCTTTTT | 59.482 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
787 | 1281 | 3.157881 | CTCCCAACCCCTTCTCTTTTTC | 58.842 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
788 | 1282 | 2.516277 | TCCCAACCCCTTCTCTTTTTCA | 59.484 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
789 | 1283 | 3.142028 | TCCCAACCCCTTCTCTTTTTCAT | 59.858 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
790 | 1284 | 4.355588 | TCCCAACCCCTTCTCTTTTTCATA | 59.644 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
791 | 1285 | 5.083821 | CCCAACCCCTTCTCTTTTTCATAA | 58.916 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
792 | 1286 | 5.185828 | CCCAACCCCTTCTCTTTTTCATAAG | 59.814 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
793 | 1287 | 6.010219 | CCAACCCCTTCTCTTTTTCATAAGA | 58.990 | 40.000 | 0.00 | 0.00 | 33.33 | 2.10 |
794 | 1288 | 6.071896 | CCAACCCCTTCTCTTTTTCATAAGAC | 60.072 | 42.308 | 0.00 | 0.00 | 31.19 | 3.01 |
795 | 1289 | 6.455690 | ACCCCTTCTCTTTTTCATAAGACT | 57.544 | 37.500 | 0.00 | 0.00 | 31.19 | 3.24 |
796 | 1290 | 6.241645 | ACCCCTTCTCTTTTTCATAAGACTG | 58.758 | 40.000 | 0.00 | 0.00 | 31.19 | 3.51 |
797 | 1291 | 6.044404 | ACCCCTTCTCTTTTTCATAAGACTGA | 59.956 | 38.462 | 0.00 | 0.00 | 31.19 | 3.41 |
798 | 1292 | 6.597280 | CCCCTTCTCTTTTTCATAAGACTGAG | 59.403 | 42.308 | 0.00 | 0.00 | 31.19 | 3.35 |
799 | 1293 | 6.597280 | CCCTTCTCTTTTTCATAAGACTGAGG | 59.403 | 42.308 | 0.00 | 0.00 | 31.19 | 3.86 |
800 | 1294 | 7.164803 | CCTTCTCTTTTTCATAAGACTGAGGT | 58.835 | 38.462 | 0.00 | 0.00 | 31.19 | 3.85 |
801 | 1295 | 8.314751 | CCTTCTCTTTTTCATAAGACTGAGGTA | 58.685 | 37.037 | 0.00 | 0.00 | 31.19 | 3.08 |
802 | 1296 | 9.883142 | CTTCTCTTTTTCATAAGACTGAGGTAT | 57.117 | 33.333 | 0.00 | 0.00 | 31.19 | 2.73 |
805 | 1299 | 9.757227 | CTCTTTTTCATAAGACTGAGGTATAGG | 57.243 | 37.037 | 0.00 | 0.00 | 31.19 | 2.57 |
806 | 1300 | 9.268282 | TCTTTTTCATAAGACTGAGGTATAGGT | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
809 | 1303 | 8.707796 | TTTCATAAGACTGAGGTATAGGTAGG | 57.292 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
810 | 1304 | 6.791371 | TCATAAGACTGAGGTATAGGTAGGG | 58.209 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
811 | 1305 | 3.529216 | AGACTGAGGTATAGGTAGGGC | 57.471 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
812 | 1306 | 3.065175 | AGACTGAGGTATAGGTAGGGCT | 58.935 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
813 | 1307 | 4.249490 | AGACTGAGGTATAGGTAGGGCTA | 58.751 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
814 | 1308 | 4.668812 | AGACTGAGGTATAGGTAGGGCTAA | 59.331 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
815 | 1309 | 5.135705 | AGACTGAGGTATAGGTAGGGCTAAA | 59.864 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
816 | 1310 | 5.785123 | ACTGAGGTATAGGTAGGGCTAAAA | 58.215 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
817 | 1311 | 6.207532 | ACTGAGGTATAGGTAGGGCTAAAAA | 58.792 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
841 | 1335 | 6.934561 | AAGCAAAATAAAGAGTCAAATCGC | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
842 | 1336 | 6.012658 | AGCAAAATAAAGAGTCAAATCGCA | 57.987 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
843 | 1337 | 5.858581 | AGCAAAATAAAGAGTCAAATCGCAC | 59.141 | 36.000 | 0.00 | 0.00 | 0.00 | 5.34 |
844 | 1338 | 5.060940 | GCAAAATAAAGAGTCAAATCGCACC | 59.939 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
845 | 1339 | 5.957842 | AAATAAAGAGTCAAATCGCACCA | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 4.17 |
846 | 1340 | 5.957842 | AATAAAGAGTCAAATCGCACCAA | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 3.67 |
847 | 1341 | 3.626028 | AAAGAGTCAAATCGCACCAAC | 57.374 | 42.857 | 0.00 | 0.00 | 0.00 | 3.77 |
848 | 1342 | 2.550830 | AGAGTCAAATCGCACCAACT | 57.449 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
849 | 1343 | 2.417719 | AGAGTCAAATCGCACCAACTC | 58.582 | 47.619 | 0.00 | 0.00 | 34.69 | 3.01 |
850 | 1344 | 2.037772 | AGAGTCAAATCGCACCAACTCT | 59.962 | 45.455 | 0.00 | 0.00 | 38.82 | 3.24 |
851 | 1345 | 3.258372 | AGAGTCAAATCGCACCAACTCTA | 59.742 | 43.478 | 1.20 | 0.00 | 41.11 | 2.43 |
852 | 1346 | 4.081420 | AGAGTCAAATCGCACCAACTCTAT | 60.081 | 41.667 | 1.20 | 0.00 | 41.11 | 1.98 |
853 | 1347 | 5.127194 | AGAGTCAAATCGCACCAACTCTATA | 59.873 | 40.000 | 1.20 | 0.00 | 41.11 | 1.31 |
854 | 1348 | 5.730550 | AGTCAAATCGCACCAACTCTATAA | 58.269 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
855 | 1349 | 6.349300 | AGTCAAATCGCACCAACTCTATAAT | 58.651 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
856 | 1350 | 7.497595 | AGTCAAATCGCACCAACTCTATAATA | 58.502 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
857 | 1351 | 7.985184 | AGTCAAATCGCACCAACTCTATAATAA | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
858 | 1352 | 8.276325 | GTCAAATCGCACCAACTCTATAATAAG | 58.724 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
859 | 1353 | 7.985184 | TCAAATCGCACCAACTCTATAATAAGT | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
860 | 1354 | 9.256477 | CAAATCGCACCAACTCTATAATAAGTA | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
861 | 1355 | 9.477484 | AAATCGCACCAACTCTATAATAAGTAG | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
862 | 1356 | 6.978338 | TCGCACCAACTCTATAATAAGTAGG | 58.022 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
863 | 1357 | 6.015688 | TCGCACCAACTCTATAATAAGTAGGG | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 3.53 |
864 | 1358 | 6.015688 | CGCACCAACTCTATAATAAGTAGGGA | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
865 | 1359 | 7.470981 | CGCACCAACTCTATAATAAGTAGGGAA | 60.471 | 40.741 | 0.00 | 0.00 | 0.00 | 3.97 |
866 | 1360 | 8.208903 | GCACCAACTCTATAATAAGTAGGGAAA | 58.791 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
1055 | 1626 | 1.363807 | CGATACGAGATGCTGCCCA | 59.636 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
1081 | 1652 | 0.647410 | CTGCGTATCTCGTGCCTTTG | 59.353 | 55.000 | 0.00 | 0.00 | 42.13 | 2.77 |
1096 | 1667 | 3.772025 | TGCCTTTGGAAGTTCTTGGAAAA | 59.228 | 39.130 | 2.25 | 0.00 | 0.00 | 2.29 |
1162 | 1733 | 0.971959 | TGGCATGGATTTCACCTGCC | 60.972 | 55.000 | 15.70 | 15.70 | 45.43 | 4.85 |
1191 | 1763 | 7.111247 | TGATCACATTTTGGAAAAACACTCT | 57.889 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1207 | 1779 | 1.651240 | CTCTGGCATTGGCGTGAAGG | 61.651 | 60.000 | 5.68 | 0.00 | 42.47 | 3.46 |
1224 | 1796 | 5.402398 | GTGAAGGCATTCGAGCTTAATTTT | 58.598 | 37.500 | 6.62 | 0.00 | 38.34 | 1.82 |
1247 | 1819 | 5.560724 | TCCCTTTTTCTACAAGTCTGATGG | 58.439 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1305 | 1880 | 5.465390 | GGTTAAACCTGGCATTGAAAAACTC | 59.535 | 40.000 | 0.00 | 0.00 | 34.73 | 3.01 |
1443 | 2029 | 3.118261 | TCAGTCTTGGTTGCTTGAGAAGT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1444 | 2030 | 3.629398 | CAGTCTTGGTTGCTTGAGAAGTT | 59.371 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1464 | 2050 | 1.852942 | TGACAGTGCTGTTTCTCGAC | 58.147 | 50.000 | 6.28 | 0.00 | 45.05 | 4.20 |
1681 | 2426 | 7.164230 | AGGTTTCACTTTACAACATTTCACA | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2043 | 2849 | 1.003580 | TCTTTTCTTGATGCCGCTCCT | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
2077 | 2888 | 3.678056 | TCACACTGAATGTAGGTCACC | 57.322 | 47.619 | 0.00 | 0.00 | 40.64 | 4.02 |
2113 | 2928 | 7.922278 | GCAAATATTCTTGAATGCACTTATCCA | 59.078 | 33.333 | 6.15 | 0.00 | 34.10 | 3.41 |
2125 | 2940 | 9.169468 | GAATGCACTTATCCAACAAATATAACG | 57.831 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2220 | 3040 | 8.192068 | CAAGAATGCATTGATGAATTGCTTTA | 57.808 | 30.769 | 18.59 | 0.00 | 36.18 | 1.85 |
2235 | 3055 | 2.869801 | TGCTTTATAAAGATCCGCCACG | 59.130 | 45.455 | 26.00 | 0.05 | 38.28 | 4.94 |
2258 | 6678 | 4.081087 | GTCTAAGGAAGTTGCCAGGATACA | 60.081 | 45.833 | 0.00 | 0.00 | 41.41 | 2.29 |
2345 | 6768 | 3.179048 | GCGTGCCATATTCTTGAAAACC | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
2438 | 6871 | 2.559440 | CTCCTTCTTGCATAGAGCCAC | 58.441 | 52.381 | 0.00 | 0.00 | 44.83 | 5.01 |
2493 | 6926 | 2.249844 | ACATCGTGGGAAAAGTTCGT | 57.750 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2505 | 6938 | 7.225341 | GTGGGAAAAGTTCGTTCTAGAGTTAAA | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
2529 | 6962 | 1.547372 | GATGTTGTGGAGCCTTGCATT | 59.453 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
2547 | 6980 | 2.851263 | TTTGGTGCCATACGAGAGTT | 57.149 | 45.000 | 0.00 | 0.00 | 46.40 | 3.01 |
2548 | 6981 | 2.851263 | TTGGTGCCATACGAGAGTTT | 57.149 | 45.000 | 0.00 | 0.00 | 46.40 | 2.66 |
2549 | 6982 | 2.851263 | TGGTGCCATACGAGAGTTTT | 57.149 | 45.000 | 0.00 | 0.00 | 46.40 | 2.43 |
2550 | 6983 | 3.134574 | TGGTGCCATACGAGAGTTTTT | 57.865 | 42.857 | 0.00 | 0.00 | 46.40 | 1.94 |
2576 | 7009 | 4.453480 | TCAACTTGTGAAATTCCCCTCT | 57.547 | 40.909 | 0.00 | 0.00 | 31.51 | 3.69 |
2577 | 7010 | 4.398319 | TCAACTTGTGAAATTCCCCTCTC | 58.602 | 43.478 | 0.00 | 0.00 | 31.51 | 3.20 |
2578 | 7011 | 4.104738 | TCAACTTGTGAAATTCCCCTCTCT | 59.895 | 41.667 | 0.00 | 0.00 | 31.51 | 3.10 |
2579 | 7012 | 4.293662 | ACTTGTGAAATTCCCCTCTCTC | 57.706 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
2580 | 7013 | 3.009584 | ACTTGTGAAATTCCCCTCTCTCC | 59.990 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
2581 | 7014 | 2.921221 | TGTGAAATTCCCCTCTCTCCT | 58.079 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
2582 | 7015 | 2.840651 | TGTGAAATTCCCCTCTCTCCTC | 59.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2583 | 7016 | 2.171659 | GTGAAATTCCCCTCTCTCCTCC | 59.828 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
2584 | 7017 | 1.771854 | GAAATTCCCCTCTCTCCTCCC | 59.228 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2585 | 7018 | 0.399233 | AATTCCCCTCTCTCCTCCCG | 60.399 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2586 | 7019 | 1.595058 | ATTCCCCTCTCTCCTCCCGT | 61.595 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2587 | 7020 | 2.443016 | CCCCTCTCTCCTCCCGTG | 60.443 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
2588 | 7021 | 2.360980 | CCCTCTCTCCTCCCGTGT | 59.639 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
3151 | 7614 | 3.289834 | CAGGCGTGGTTGCTGCTT | 61.290 | 61.111 | 0.00 | 0.00 | 34.52 | 3.91 |
3156 | 7619 | 2.980233 | GTGGTTGCTGCTTCGGCT | 60.980 | 61.111 | 0.00 | 0.00 | 42.37 | 5.52 |
3203 | 7666 | 3.688159 | GCCTACCGGTGTCGTGGT | 61.688 | 66.667 | 19.93 | 0.00 | 42.34 | 4.16 |
3271 | 7734 | 2.970324 | GGCGTCGGTTTGTCTGCA | 60.970 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
3348 | 7811 | 2.610859 | GGGCTGGTCCTCTCCCAA | 60.611 | 66.667 | 8.29 | 0.00 | 38.62 | 4.12 |
3403 | 11907 | 2.258591 | GGCAGAACTCGTCTCGCA | 59.741 | 61.111 | 0.00 | 0.00 | 32.70 | 5.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.851805 | TCGTGAGAACCATCATCTCG | 57.148 | 50.000 | 0.00 | 0.00 | 45.05 | 4.04 |
13 | 14 | 2.939103 | CCCCTTCTTTTGCTATCGTGAG | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
14 | 15 | 2.355716 | CCCCCTTCTTTTGCTATCGTGA | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
15 | 16 | 2.017049 | CCCCCTTCTTTTGCTATCGTG | 58.983 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
16 | 17 | 1.633945 | ACCCCCTTCTTTTGCTATCGT | 59.366 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
17 | 18 | 2.092914 | AGACCCCCTTCTTTTGCTATCG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
18 | 19 | 3.653835 | AGACCCCCTTCTTTTGCTATC | 57.346 | 47.619 | 0.00 | 0.00 | 0.00 | 2.08 |
19 | 20 | 3.969553 | GAAGACCCCCTTCTTTTGCTAT | 58.030 | 45.455 | 0.00 | 0.00 | 46.03 | 2.97 |
20 | 21 | 3.434940 | GAAGACCCCCTTCTTTTGCTA | 57.565 | 47.619 | 0.00 | 0.00 | 46.03 | 3.49 |
21 | 22 | 2.294449 | GAAGACCCCCTTCTTTTGCT | 57.706 | 50.000 | 0.00 | 0.00 | 46.03 | 3.91 |
29 | 30 | 0.846870 | CCTTCCCTGAAGACCCCCTT | 60.847 | 60.000 | 5.43 | 0.00 | 41.71 | 3.95 |
30 | 31 | 1.229984 | CCTTCCCTGAAGACCCCCT | 60.230 | 63.158 | 5.43 | 0.00 | 41.71 | 4.79 |
31 | 32 | 0.845102 | TTCCTTCCCTGAAGACCCCC | 60.845 | 60.000 | 5.43 | 0.00 | 41.71 | 5.40 |
32 | 33 | 0.328592 | GTTCCTTCCCTGAAGACCCC | 59.671 | 60.000 | 5.43 | 0.00 | 41.71 | 4.95 |
33 | 34 | 1.279558 | GAGTTCCTTCCCTGAAGACCC | 59.720 | 57.143 | 5.43 | 0.00 | 41.71 | 4.46 |
34 | 35 | 1.066787 | CGAGTTCCTTCCCTGAAGACC | 60.067 | 57.143 | 5.43 | 0.00 | 41.71 | 3.85 |
35 | 36 | 1.673329 | GCGAGTTCCTTCCCTGAAGAC | 60.673 | 57.143 | 5.43 | 0.00 | 41.71 | 3.01 |
36 | 37 | 0.608640 | GCGAGTTCCTTCCCTGAAGA | 59.391 | 55.000 | 5.43 | 0.00 | 41.71 | 2.87 |
37 | 38 | 0.321671 | TGCGAGTTCCTTCCCTGAAG | 59.678 | 55.000 | 0.00 | 0.00 | 39.17 | 3.02 |
38 | 39 | 0.321671 | CTGCGAGTTCCTTCCCTGAA | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
39 | 40 | 0.832135 | ACTGCGAGTTCCTTCCCTGA | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
40 | 41 | 0.035458 | AACTGCGAGTTCCTTCCCTG | 59.965 | 55.000 | 0.00 | 0.00 | 31.77 | 4.45 |
41 | 42 | 0.321996 | GAACTGCGAGTTCCTTCCCT | 59.678 | 55.000 | 14.47 | 0.00 | 46.68 | 4.20 |
42 | 43 | 2.842320 | GAACTGCGAGTTCCTTCCC | 58.158 | 57.895 | 14.47 | 0.00 | 46.68 | 3.97 |
49 | 50 | 1.045407 | TACCTGTGGAACTGCGAGTT | 58.955 | 50.000 | 1.82 | 1.82 | 41.95 | 3.01 |
50 | 51 | 1.045407 | TTACCTGTGGAACTGCGAGT | 58.955 | 50.000 | 0.00 | 0.00 | 38.04 | 4.18 |
51 | 52 | 1.270094 | TGTTACCTGTGGAACTGCGAG | 60.270 | 52.381 | 0.00 | 0.00 | 38.04 | 5.03 |
52 | 53 | 0.753867 | TGTTACCTGTGGAACTGCGA | 59.246 | 50.000 | 0.00 | 0.00 | 38.04 | 5.10 |
53 | 54 | 0.865769 | GTGTTACCTGTGGAACTGCG | 59.134 | 55.000 | 0.00 | 0.00 | 38.04 | 5.18 |
54 | 55 | 1.961793 | TGTGTTACCTGTGGAACTGC | 58.038 | 50.000 | 0.00 | 0.00 | 38.04 | 4.40 |
55 | 56 | 3.074412 | GGATGTGTTACCTGTGGAACTG | 58.926 | 50.000 | 0.00 | 0.00 | 38.04 | 3.16 |
56 | 57 | 2.979678 | AGGATGTGTTACCTGTGGAACT | 59.020 | 45.455 | 0.00 | 0.00 | 38.04 | 3.01 |
57 | 58 | 3.418684 | AGGATGTGTTACCTGTGGAAC | 57.581 | 47.619 | 0.00 | 0.00 | 34.99 | 3.62 |
58 | 59 | 3.244770 | GGAAGGATGTGTTACCTGTGGAA | 60.245 | 47.826 | 0.00 | 0.00 | 36.56 | 3.53 |
59 | 60 | 2.304761 | GGAAGGATGTGTTACCTGTGGA | 59.695 | 50.000 | 0.00 | 0.00 | 36.56 | 4.02 |
60 | 61 | 2.039746 | TGGAAGGATGTGTTACCTGTGG | 59.960 | 50.000 | 0.00 | 0.00 | 36.56 | 4.17 |
61 | 62 | 3.417069 | TGGAAGGATGTGTTACCTGTG | 57.583 | 47.619 | 0.00 | 0.00 | 36.56 | 3.66 |
62 | 63 | 3.587061 | TCATGGAAGGATGTGTTACCTGT | 59.413 | 43.478 | 0.00 | 0.00 | 36.56 | 4.00 |
63 | 64 | 4.220693 | TCATGGAAGGATGTGTTACCTG | 57.779 | 45.455 | 0.00 | 0.00 | 36.56 | 4.00 |
64 | 65 | 4.927267 | TTCATGGAAGGATGTGTTACCT | 57.073 | 40.909 | 0.00 | 0.00 | 38.23 | 3.08 |
65 | 66 | 6.152661 | TCAAATTCATGGAAGGATGTGTTACC | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
66 | 67 | 7.156876 | TCAAATTCATGGAAGGATGTGTTAC | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
67 | 68 | 7.773489 | TTCAAATTCATGGAAGGATGTGTTA | 57.227 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
68 | 69 | 6.669125 | TTCAAATTCATGGAAGGATGTGTT | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
69 | 70 | 6.351541 | CCATTCAAATTCATGGAAGGATGTGT | 60.352 | 38.462 | 5.64 | 0.00 | 42.49 | 3.72 |
70 | 71 | 6.046593 | CCATTCAAATTCATGGAAGGATGTG | 58.953 | 40.000 | 5.64 | 0.00 | 42.49 | 3.21 |
71 | 72 | 5.395990 | GCCATTCAAATTCATGGAAGGATGT | 60.396 | 40.000 | 13.14 | 0.00 | 42.49 | 3.06 |
72 | 73 | 5.054477 | GCCATTCAAATTCATGGAAGGATG | 58.946 | 41.667 | 13.14 | 0.00 | 42.49 | 3.51 |
73 | 74 | 4.717778 | TGCCATTCAAATTCATGGAAGGAT | 59.282 | 37.500 | 13.14 | 0.00 | 42.49 | 3.24 |
74 | 75 | 4.081531 | GTGCCATTCAAATTCATGGAAGGA | 60.082 | 41.667 | 13.14 | 0.00 | 42.49 | 3.36 |
75 | 76 | 4.186159 | GTGCCATTCAAATTCATGGAAGG | 58.814 | 43.478 | 13.14 | 0.00 | 42.49 | 3.46 |
76 | 77 | 4.823157 | TGTGCCATTCAAATTCATGGAAG | 58.177 | 39.130 | 13.14 | 0.00 | 42.49 | 3.46 |
77 | 78 | 4.886496 | TGTGCCATTCAAATTCATGGAA | 57.114 | 36.364 | 13.14 | 2.55 | 42.49 | 3.53 |
78 | 79 | 4.823157 | CTTGTGCCATTCAAATTCATGGA | 58.177 | 39.130 | 13.14 | 0.00 | 42.49 | 3.41 |
79 | 80 | 3.372822 | GCTTGTGCCATTCAAATTCATGG | 59.627 | 43.478 | 6.83 | 6.83 | 42.73 | 3.66 |
80 | 81 | 4.092821 | CAGCTTGTGCCATTCAAATTCATG | 59.907 | 41.667 | 0.00 | 0.00 | 40.80 | 3.07 |
81 | 82 | 4.020928 | TCAGCTTGTGCCATTCAAATTCAT | 60.021 | 37.500 | 0.00 | 0.00 | 40.80 | 2.57 |
82 | 83 | 3.321396 | TCAGCTTGTGCCATTCAAATTCA | 59.679 | 39.130 | 0.00 | 0.00 | 40.80 | 2.57 |
83 | 84 | 3.916761 | TCAGCTTGTGCCATTCAAATTC | 58.083 | 40.909 | 0.00 | 0.00 | 40.80 | 2.17 |
84 | 85 | 4.222145 | AGATCAGCTTGTGCCATTCAAATT | 59.778 | 37.500 | 0.00 | 0.00 | 40.80 | 1.82 |
85 | 86 | 3.767673 | AGATCAGCTTGTGCCATTCAAAT | 59.232 | 39.130 | 0.00 | 0.00 | 40.80 | 2.32 |
86 | 87 | 3.057104 | CAGATCAGCTTGTGCCATTCAAA | 60.057 | 43.478 | 0.00 | 0.00 | 40.80 | 2.69 |
87 | 88 | 2.490509 | CAGATCAGCTTGTGCCATTCAA | 59.509 | 45.455 | 0.00 | 0.00 | 40.80 | 2.69 |
88 | 89 | 2.089201 | CAGATCAGCTTGTGCCATTCA | 58.911 | 47.619 | 0.00 | 0.00 | 40.80 | 2.57 |
89 | 90 | 2.097142 | GTCAGATCAGCTTGTGCCATTC | 59.903 | 50.000 | 0.00 | 0.00 | 40.80 | 2.67 |
90 | 91 | 2.089980 | GTCAGATCAGCTTGTGCCATT | 58.910 | 47.619 | 0.00 | 0.00 | 40.80 | 3.16 |
91 | 92 | 1.747709 | GTCAGATCAGCTTGTGCCAT | 58.252 | 50.000 | 0.00 | 0.00 | 40.80 | 4.40 |
92 | 93 | 0.671472 | CGTCAGATCAGCTTGTGCCA | 60.671 | 55.000 | 0.00 | 0.00 | 40.80 | 4.92 |
93 | 94 | 0.390340 | TCGTCAGATCAGCTTGTGCC | 60.390 | 55.000 | 0.00 | 0.00 | 40.80 | 5.01 |
94 | 95 | 0.718343 | GTCGTCAGATCAGCTTGTGC | 59.282 | 55.000 | 0.00 | 0.00 | 40.05 | 4.57 |
95 | 96 | 1.067283 | AGGTCGTCAGATCAGCTTGTG | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
96 | 97 | 1.261480 | AGGTCGTCAGATCAGCTTGT | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
97 | 98 | 3.379240 | CATAGGTCGTCAGATCAGCTTG | 58.621 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
98 | 99 | 2.223923 | GCATAGGTCGTCAGATCAGCTT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.74 |
99 | 100 | 1.339610 | GCATAGGTCGTCAGATCAGCT | 59.660 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
100 | 101 | 1.339610 | AGCATAGGTCGTCAGATCAGC | 59.660 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
101 | 102 | 3.365868 | GCTAGCATAGGTCGTCAGATCAG | 60.366 | 52.174 | 10.63 | 0.00 | 39.70 | 2.90 |
102 | 103 | 2.554462 | GCTAGCATAGGTCGTCAGATCA | 59.446 | 50.000 | 10.63 | 0.00 | 39.70 | 2.92 |
103 | 104 | 3.210358 | GCTAGCATAGGTCGTCAGATC | 57.790 | 52.381 | 10.63 | 0.00 | 39.70 | 2.75 |
140 | 141 | 9.134734 | CCACACGCAAAAATAAATACAGTAAAT | 57.865 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
141 | 142 | 8.136165 | ACCACACGCAAAAATAAATACAGTAAA | 58.864 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
142 | 143 | 7.649973 | ACCACACGCAAAAATAAATACAGTAA | 58.350 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
143 | 144 | 7.204496 | ACCACACGCAAAAATAAATACAGTA | 57.796 | 32.000 | 0.00 | 0.00 | 0.00 | 2.74 |
144 | 145 | 6.079424 | ACCACACGCAAAAATAAATACAGT | 57.921 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
145 | 146 | 5.571357 | GGACCACACGCAAAAATAAATACAG | 59.429 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
146 | 147 | 5.241949 | AGGACCACACGCAAAAATAAATACA | 59.758 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
147 | 148 | 5.571357 | CAGGACCACACGCAAAAATAAATAC | 59.429 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
148 | 149 | 5.704888 | CAGGACCACACGCAAAAATAAATA | 58.295 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
149 | 150 | 4.555262 | CAGGACCACACGCAAAAATAAAT | 58.445 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
150 | 151 | 3.797184 | GCAGGACCACACGCAAAAATAAA | 60.797 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
151 | 152 | 2.287909 | GCAGGACCACACGCAAAAATAA | 60.288 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
152 | 153 | 1.268352 | GCAGGACCACACGCAAAAATA | 59.732 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
153 | 154 | 0.031994 | GCAGGACCACACGCAAAAAT | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
154 | 155 | 1.034838 | AGCAGGACCACACGCAAAAA | 61.035 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
155 | 156 | 1.453015 | AGCAGGACCACACGCAAAA | 60.453 | 52.632 | 0.00 | 0.00 | 0.00 | 2.44 |
156 | 157 | 2.186160 | CAGCAGGACCACACGCAAA | 61.186 | 57.895 | 0.00 | 0.00 | 0.00 | 3.68 |
157 | 158 | 2.591429 | CAGCAGGACCACACGCAA | 60.591 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
160 | 161 | 0.673333 | TAATGCAGCAGGACCACACG | 60.673 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
161 | 162 | 1.089920 | CTAATGCAGCAGGACCACAC | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
162 | 163 | 0.692476 | ACTAATGCAGCAGGACCACA | 59.308 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
163 | 164 | 2.093447 | AGTACTAATGCAGCAGGACCAC | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
164 | 165 | 2.187958 | AGTACTAATGCAGCAGGACCA | 58.812 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
165 | 166 | 2.990066 | AGTACTAATGCAGCAGGACC | 57.010 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
166 | 167 | 3.868077 | CAGAAGTACTAATGCAGCAGGAC | 59.132 | 47.826 | 0.00 | 4.81 | 0.00 | 3.85 |
167 | 168 | 3.515502 | ACAGAAGTACTAATGCAGCAGGA | 59.484 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
180 | 181 | 9.406828 | GGAACAATTGGAATAAAACAGAAGTAC | 57.593 | 33.333 | 10.83 | 0.00 | 0.00 | 2.73 |
192 | 193 | 7.356680 | AGATGAATCCTGGAACAATTGGAATA | 58.643 | 34.615 | 10.83 | 0.00 | 38.70 | 1.75 |
209 | 210 | 2.209838 | TTCTGACGCGGAGATGAATC | 57.790 | 50.000 | 12.47 | 0.00 | 0.00 | 2.52 |
210 | 211 | 2.672961 | TTTCTGACGCGGAGATGAAT | 57.327 | 45.000 | 12.47 | 0.00 | 0.00 | 2.57 |
213 | 214 | 1.714794 | AGTTTTCTGACGCGGAGATG | 58.285 | 50.000 | 12.47 | 0.00 | 0.00 | 2.90 |
291 | 292 | 7.491682 | AGTTTGCTTAAGGGCATAATATGTTG | 58.508 | 34.615 | 4.29 | 0.00 | 42.09 | 3.33 |
319 | 320 | 1.586154 | AAAGCGACATCCCAAAGGCG | 61.586 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
344 | 345 | 5.688807 | TGGGAATCAGAAATCTCCAGAATC | 58.311 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
365 | 366 | 1.962807 | TCCAAAGGCTGTTGAACATGG | 59.037 | 47.619 | 8.26 | 8.26 | 0.00 | 3.66 |
382 | 383 | 0.106769 | TTTGTGGCACTTCTGCTCCA | 60.107 | 50.000 | 19.83 | 0.00 | 43.66 | 3.86 |
384 | 385 | 1.265365 | GTCTTTGTGGCACTTCTGCTC | 59.735 | 52.381 | 19.83 | 0.10 | 43.66 | 4.26 |
433 | 507 | 2.390938 | CATTTGAGTGCAAGCAGTGTG | 58.609 | 47.619 | 7.19 | 0.00 | 35.04 | 3.82 |
435 | 509 | 1.415374 | GCATTTGAGTGCAAGCAGTG | 58.585 | 50.000 | 7.19 | 0.00 | 44.43 | 3.66 |
462 | 536 | 7.617935 | GCATTAAAGTTCTGAAGTTCATTTGCG | 60.618 | 37.037 | 5.91 | 0.00 | 0.00 | 4.85 |
730 | 1035 | 2.502142 | TAGCGGTTCACTACCTCTGA | 57.498 | 50.000 | 0.00 | 0.00 | 41.99 | 3.27 |
731 | 1036 | 3.119101 | ACAATAGCGGTTCACTACCTCTG | 60.119 | 47.826 | 0.00 | 0.00 | 41.99 | 3.35 |
733 | 1038 | 3.521947 | ACAATAGCGGTTCACTACCTC | 57.478 | 47.619 | 0.00 | 0.00 | 45.40 | 3.85 |
734 | 1039 | 3.259876 | TCAACAATAGCGGTTCACTACCT | 59.740 | 43.478 | 0.00 | 0.00 | 45.40 | 3.08 |
735 | 1040 | 3.370061 | GTCAACAATAGCGGTTCACTACC | 59.630 | 47.826 | 0.00 | 0.00 | 44.03 | 3.18 |
736 | 1041 | 4.243270 | AGTCAACAATAGCGGTTCACTAC | 58.757 | 43.478 | 0.00 | 0.00 | 27.24 | 2.73 |
738 | 1043 | 3.244078 | TGAGTCAACAATAGCGGTTCACT | 60.244 | 43.478 | 0.00 | 0.00 | 31.99 | 3.41 |
740 | 1045 | 3.394674 | TGAGTCAACAATAGCGGTTCA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
741 | 1046 | 5.350365 | TGTTATGAGTCAACAATAGCGGTTC | 59.650 | 40.000 | 0.00 | 0.00 | 33.11 | 3.62 |
769 | 1263 | 6.010219 | TCTTATGAAAAAGAGAAGGGGTTGG | 58.990 | 40.000 | 0.00 | 0.00 | 31.85 | 3.77 |
770 | 1264 | 6.717084 | AGTCTTATGAAAAAGAGAAGGGGTTG | 59.283 | 38.462 | 0.00 | 0.00 | 36.19 | 3.77 |
771 | 1265 | 6.717084 | CAGTCTTATGAAAAAGAGAAGGGGTT | 59.283 | 38.462 | 0.00 | 0.00 | 36.19 | 4.11 |
773 | 1267 | 6.476378 | TCAGTCTTATGAAAAAGAGAAGGGG | 58.524 | 40.000 | 0.00 | 0.00 | 36.19 | 4.79 |
774 | 1268 | 6.597280 | CCTCAGTCTTATGAAAAAGAGAAGGG | 59.403 | 42.308 | 0.00 | 0.00 | 36.19 | 3.95 |
775 | 1269 | 7.164803 | ACCTCAGTCTTATGAAAAAGAGAAGG | 58.835 | 38.462 | 0.00 | 0.00 | 36.19 | 3.46 |
776 | 1270 | 9.883142 | ATACCTCAGTCTTATGAAAAAGAGAAG | 57.117 | 33.333 | 0.00 | 0.00 | 36.19 | 2.85 |
779 | 1273 | 9.757227 | CCTATACCTCAGTCTTATGAAAAAGAG | 57.243 | 37.037 | 0.00 | 0.00 | 36.19 | 2.85 |
780 | 1274 | 9.268282 | ACCTATACCTCAGTCTTATGAAAAAGA | 57.732 | 33.333 | 0.00 | 0.00 | 33.10 | 2.52 |
783 | 1277 | 9.144298 | CCTACCTATACCTCAGTCTTATGAAAA | 57.856 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
784 | 1278 | 7.728981 | CCCTACCTATACCTCAGTCTTATGAAA | 59.271 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
785 | 1279 | 7.239438 | CCCTACCTATACCTCAGTCTTATGAA | 58.761 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
786 | 1280 | 6.750351 | GCCCTACCTATACCTCAGTCTTATGA | 60.750 | 46.154 | 0.00 | 0.00 | 0.00 | 2.15 |
787 | 1281 | 5.419471 | GCCCTACCTATACCTCAGTCTTATG | 59.581 | 48.000 | 0.00 | 0.00 | 0.00 | 1.90 |
788 | 1282 | 5.316453 | AGCCCTACCTATACCTCAGTCTTAT | 59.684 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
789 | 1283 | 4.668812 | AGCCCTACCTATACCTCAGTCTTA | 59.331 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
790 | 1284 | 3.467863 | AGCCCTACCTATACCTCAGTCTT | 59.532 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
791 | 1285 | 3.065175 | AGCCCTACCTATACCTCAGTCT | 58.935 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
792 | 1286 | 3.529216 | AGCCCTACCTATACCTCAGTC | 57.471 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
793 | 1287 | 5.414133 | TTTAGCCCTACCTATACCTCAGT | 57.586 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
794 | 1288 | 6.742559 | TTTTTAGCCCTACCTATACCTCAG | 57.257 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
815 | 1309 | 8.275632 | GCGATTTGACTCTTTATTTTGCTTTTT | 58.724 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
816 | 1310 | 7.437862 | TGCGATTTGACTCTTTATTTTGCTTTT | 59.562 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
817 | 1311 | 6.922957 | TGCGATTTGACTCTTTATTTTGCTTT | 59.077 | 30.769 | 0.00 | 0.00 | 0.00 | 3.51 |
818 | 1312 | 6.363357 | GTGCGATTTGACTCTTTATTTTGCTT | 59.637 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
819 | 1313 | 5.858581 | GTGCGATTTGACTCTTTATTTTGCT | 59.141 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
820 | 1314 | 5.060940 | GGTGCGATTTGACTCTTTATTTTGC | 59.939 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
821 | 1315 | 6.148948 | TGGTGCGATTTGACTCTTTATTTTG | 58.851 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
822 | 1316 | 6.325919 | TGGTGCGATTTGACTCTTTATTTT | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
823 | 1317 | 5.957842 | TGGTGCGATTTGACTCTTTATTT | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
824 | 1318 | 5.473504 | AGTTGGTGCGATTTGACTCTTTATT | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
825 | 1319 | 5.003804 | AGTTGGTGCGATTTGACTCTTTAT | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
826 | 1320 | 4.385825 | AGTTGGTGCGATTTGACTCTTTA | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
827 | 1321 | 3.214328 | AGTTGGTGCGATTTGACTCTTT | 58.786 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
828 | 1322 | 2.808543 | GAGTTGGTGCGATTTGACTCTT | 59.191 | 45.455 | 0.00 | 0.00 | 32.79 | 2.85 |
829 | 1323 | 2.037772 | AGAGTTGGTGCGATTTGACTCT | 59.962 | 45.455 | 0.00 | 0.00 | 39.07 | 3.24 |
830 | 1324 | 2.417719 | AGAGTTGGTGCGATTTGACTC | 58.582 | 47.619 | 0.00 | 0.00 | 35.06 | 3.36 |
831 | 1325 | 2.550830 | AGAGTTGGTGCGATTTGACT | 57.449 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
832 | 1326 | 6.604735 | ATTATAGAGTTGGTGCGATTTGAC | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
833 | 1327 | 7.985184 | ACTTATTATAGAGTTGGTGCGATTTGA | 59.015 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
834 | 1328 | 8.142994 | ACTTATTATAGAGTTGGTGCGATTTG | 57.857 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
835 | 1329 | 9.477484 | CTACTTATTATAGAGTTGGTGCGATTT | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
836 | 1330 | 8.088981 | CCTACTTATTATAGAGTTGGTGCGATT | 58.911 | 37.037 | 0.00 | 0.00 | 35.13 | 3.34 |
837 | 1331 | 7.309867 | CCCTACTTATTATAGAGTTGGTGCGAT | 60.310 | 40.741 | 0.00 | 0.00 | 37.16 | 4.58 |
838 | 1332 | 6.015688 | CCCTACTTATTATAGAGTTGGTGCGA | 60.016 | 42.308 | 0.00 | 0.00 | 37.16 | 5.10 |
839 | 1333 | 6.015688 | TCCCTACTTATTATAGAGTTGGTGCG | 60.016 | 42.308 | 10.31 | 0.00 | 37.16 | 5.34 |
840 | 1334 | 7.299246 | TCCCTACTTATTATAGAGTTGGTGC | 57.701 | 40.000 | 10.31 | 0.00 | 37.16 | 5.01 |
866 | 1360 | 6.491403 | ACTGAGCATTGGATAGACAAGTTTTT | 59.509 | 34.615 | 0.00 | 0.00 | 33.23 | 1.94 |
867 | 1361 | 6.006449 | ACTGAGCATTGGATAGACAAGTTTT | 58.994 | 36.000 | 0.00 | 0.00 | 33.23 | 2.43 |
998 | 1569 | 2.291209 | ACACCAAATGTCCTGCATCA | 57.709 | 45.000 | 0.00 | 0.00 | 36.54 | 3.07 |
1039 | 1610 | 0.604780 | GCATGGGCAGCATCTCGTAT | 60.605 | 55.000 | 0.00 | 0.00 | 40.72 | 3.06 |
1055 | 1626 | 1.300465 | CGAGATACGCAGGCAGCAT | 60.300 | 57.895 | 1.96 | 0.00 | 46.13 | 3.79 |
1081 | 1652 | 4.399618 | GGGATAGCTTTTCCAAGAACTTCC | 59.600 | 45.833 | 15.17 | 0.00 | 34.77 | 3.46 |
1096 | 1667 | 9.117223 | AGTATTAAATATGAGGTTGGGATAGCT | 57.883 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
1162 | 1733 | 6.475076 | TGTTTTTCCAAAATGTGATCAACTCG | 59.525 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
1191 | 1763 | 3.372730 | GCCTTCACGCCAATGCCA | 61.373 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
1207 | 1779 | 4.639135 | AGGGAAAATTAAGCTCGAATGC | 57.361 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
1224 | 1796 | 5.560724 | CCATCAGACTTGTAGAAAAAGGGA | 58.439 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1242 | 1814 | 8.708378 | CACCTATGGAGATATTTATAGCCATCA | 58.292 | 37.037 | 0.00 | 0.00 | 37.34 | 3.07 |
1305 | 1880 | 0.250234 | TCTCAGGAATCGCAAGGGTG | 59.750 | 55.000 | 0.00 | 0.00 | 38.47 | 4.61 |
1443 | 2029 | 2.607635 | GTCGAGAAACAGCACTGTCAAA | 59.392 | 45.455 | 3.32 | 0.00 | 44.13 | 2.69 |
1444 | 2030 | 2.159099 | AGTCGAGAAACAGCACTGTCAA | 60.159 | 45.455 | 3.32 | 0.00 | 44.13 | 3.18 |
1464 | 2050 | 2.093306 | TCCCTGTAATTCGCACACAG | 57.907 | 50.000 | 0.00 | 0.00 | 39.50 | 3.66 |
1814 | 2560 | 7.259088 | AGAGTTTTAGAACATACCTCATGGT | 57.741 | 36.000 | 0.00 | 0.00 | 42.92 | 3.55 |
2043 | 2849 | 3.390967 | TCAGTGTGAACATCTCCAAGGAA | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2054 | 2860 | 4.377021 | GTGACCTACATTCAGTGTGAACA | 58.623 | 43.478 | 0.00 | 0.00 | 39.45 | 3.18 |
2077 | 2888 | 6.122850 | TCAAGAATATTTGCAGGATGAACG | 57.877 | 37.500 | 0.00 | 0.00 | 39.69 | 3.95 |
2113 | 2928 | 6.875076 | ACTACAGAGGCTCGTTATATTTGTT | 58.125 | 36.000 | 15.14 | 0.00 | 0.00 | 2.83 |
2125 | 2940 | 3.618690 | ATGGTTCAACTACAGAGGCTC | 57.381 | 47.619 | 6.34 | 6.34 | 0.00 | 4.70 |
2220 | 3040 | 3.243771 | CCTTAGACGTGGCGGATCTTTAT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
2235 | 3055 | 3.636153 | ATCCTGGCAACTTCCTTAGAC | 57.364 | 47.619 | 0.00 | 0.00 | 37.61 | 2.59 |
2345 | 6768 | 1.703438 | GCAAGACGCTCTGATGCTGG | 61.703 | 60.000 | 0.00 | 0.00 | 37.77 | 4.85 |
2438 | 6871 | 2.666190 | CCGCTGTATGGGCATCCG | 60.666 | 66.667 | 0.00 | 0.00 | 35.24 | 4.18 |
2493 | 6926 | 9.085645 | TCCACAACATCTAGTTTAACTCTAGAA | 57.914 | 33.333 | 15.85 | 5.32 | 44.29 | 2.10 |
2505 | 6938 | 2.616510 | GCAAGGCTCCACAACATCTAGT | 60.617 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2529 | 6962 | 2.851263 | AAACTCTCGTATGGCACCAA | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2547 | 6980 | 7.766738 | GGGGAATTTCACAAGTTGAACTAAAAA | 59.233 | 33.333 | 10.54 | 0.00 | 44.28 | 1.94 |
2548 | 6981 | 7.125053 | AGGGGAATTTCACAAGTTGAACTAAAA | 59.875 | 33.333 | 10.54 | 0.00 | 44.28 | 1.52 |
2549 | 6982 | 6.609616 | AGGGGAATTTCACAAGTTGAACTAAA | 59.390 | 34.615 | 10.54 | 4.75 | 44.28 | 1.85 |
2550 | 6983 | 6.133356 | AGGGGAATTTCACAAGTTGAACTAA | 58.867 | 36.000 | 10.54 | 0.00 | 44.28 | 2.24 |
2551 | 6984 | 5.701224 | AGGGGAATTTCACAAGTTGAACTA | 58.299 | 37.500 | 10.54 | 0.00 | 44.28 | 2.24 |
2552 | 6985 | 4.546674 | AGGGGAATTTCACAAGTTGAACT | 58.453 | 39.130 | 10.54 | 0.00 | 44.28 | 3.01 |
2553 | 6986 | 4.584743 | AGAGGGGAATTTCACAAGTTGAAC | 59.415 | 41.667 | 10.54 | 0.00 | 44.28 | 3.18 |
2554 | 6987 | 4.803452 | AGAGGGGAATTTCACAAGTTGAA | 58.197 | 39.130 | 10.54 | 0.00 | 42.83 | 2.69 |
2555 | 6988 | 4.104738 | AGAGAGGGGAATTTCACAAGTTGA | 59.895 | 41.667 | 10.54 | 0.00 | 0.00 | 3.18 |
2556 | 6989 | 4.401925 | AGAGAGGGGAATTTCACAAGTTG | 58.598 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2557 | 6990 | 4.507512 | GGAGAGAGGGGAATTTCACAAGTT | 60.508 | 45.833 | 0.29 | 0.00 | 0.00 | 2.66 |
2558 | 6991 | 3.009584 | GGAGAGAGGGGAATTTCACAAGT | 59.990 | 47.826 | 0.29 | 0.00 | 0.00 | 3.16 |
2559 | 6992 | 3.265479 | AGGAGAGAGGGGAATTTCACAAG | 59.735 | 47.826 | 0.29 | 0.00 | 0.00 | 3.16 |
2560 | 6993 | 3.260205 | AGGAGAGAGGGGAATTTCACAA | 58.740 | 45.455 | 0.29 | 0.00 | 0.00 | 3.33 |
2561 | 6994 | 2.840651 | GAGGAGAGAGGGGAATTTCACA | 59.159 | 50.000 | 0.29 | 0.00 | 0.00 | 3.58 |
2562 | 6995 | 2.171659 | GGAGGAGAGAGGGGAATTTCAC | 59.828 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
2563 | 6996 | 2.482494 | GGAGGAGAGAGGGGAATTTCA | 58.518 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2564 | 6997 | 1.771854 | GGGAGGAGAGAGGGGAATTTC | 59.228 | 57.143 | 0.00 | 0.00 | 0.00 | 2.17 |
2565 | 6998 | 1.900254 | GGGAGGAGAGAGGGGAATTT | 58.100 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2566 | 6999 | 0.399233 | CGGGAGGAGAGAGGGGAATT | 60.399 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2567 | 7000 | 1.234529 | CGGGAGGAGAGAGGGGAAT | 59.765 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
2568 | 7001 | 2.246874 | ACGGGAGGAGAGAGGGGAA | 61.247 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
2569 | 7002 | 2.617538 | ACGGGAGGAGAGAGGGGA | 60.618 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
2570 | 7003 | 2.443016 | CACGGGAGGAGAGAGGGG | 60.443 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
2571 | 7004 | 1.755008 | GACACGGGAGGAGAGAGGG | 60.755 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
2572 | 7005 | 1.755008 | GGACACGGGAGGAGAGAGG | 60.755 | 68.421 | 0.00 | 0.00 | 0.00 | 3.69 |
2573 | 7006 | 1.755008 | GGGACACGGGAGGAGAGAG | 60.755 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
2574 | 7007 | 2.359404 | GGGACACGGGAGGAGAGA | 59.641 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2575 | 7008 | 2.760385 | GGGGACACGGGAGGAGAG | 60.760 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
2576 | 7009 | 4.393778 | GGGGGACACGGGAGGAGA | 62.394 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
3135 | 7574 | 2.980233 | GAAGCAGCAACCACGCCT | 60.980 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
3143 | 7606 | 2.979676 | CCACAGCCGAAGCAGCAA | 60.980 | 61.111 | 0.00 | 0.00 | 43.56 | 3.91 |
3203 | 7666 | 2.107041 | ATCGAGCCACCGTGAAACCA | 62.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3271 | 7734 | 3.834799 | GGTCGAGACGGCCCGAAT | 61.835 | 66.667 | 11.71 | 0.00 | 46.90 | 3.34 |
3374 | 7837 | 2.958281 | TTCTGCCCTGCTGCATCGA | 61.958 | 57.895 | 1.31 | 0.00 | 41.16 | 3.59 |
3387 | 11891 | 1.371758 | TGTGCGAGACGAGTTCTGC | 60.372 | 57.895 | 0.00 | 0.00 | 33.22 | 4.26 |
3403 | 11907 | 1.667830 | CGGTCCTGTTGCATCGTGT | 60.668 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
3413 | 11917 | 2.034376 | AGACGAGCTCGGTCCTGT | 59.966 | 61.111 | 36.93 | 17.55 | 44.95 | 4.00 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.