Multiple sequence alignment - TraesCS5B01G290900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G290900 chr5B 100.000 4077 0 0 1 4077 476796451 476800527 0.000000e+00 7529.0
1 TraesCS5B01G290900 chr5B 100.000 2812 0 0 4311 7122 476800761 476803572 0.000000e+00 5193.0
2 TraesCS5B01G290900 chr5B 85.052 582 60 11 6564 7122 476808194 476808771 1.040000e-157 568.0
3 TraesCS5B01G290900 chr5B 96.899 129 3 1 2894 3021 382894248 382894376 1.560000e-51 215.0
4 TraesCS5B01G290900 chr5B 99.153 118 1 0 2890 3007 570951893 570952010 5.600000e-51 213.0
5 TraesCS5B01G290900 chr5B 94.444 36 2 0 3017 3052 577303870 577303835 1.000000e-03 56.5
6 TraesCS5B01G290900 chr5D 95.604 2821 80 17 4311 7122 396805045 396807830 0.000000e+00 4482.0
7 TraesCS5B01G290900 chr5D 95.802 2668 93 11 1 2653 396801294 396803957 0.000000e+00 4289.0
8 TraesCS5B01G290900 chr5D 94.027 1239 48 6 4311 5543 102025753 102024535 0.000000e+00 1855.0
9 TraesCS5B01G290900 chr5D 95.640 1032 40 3 3048 4075 396803955 396804985 0.000000e+00 1652.0
10 TraesCS5B01G290900 chr5D 91.729 798 46 7 3265 4050 102026546 102025757 0.000000e+00 1090.0
11 TraesCS5B01G290900 chr5D 92.763 304 18 3 6564 6865 396813621 396813922 3.050000e-118 436.0
12 TraesCS5B01G290900 chr5D 96.154 78 2 1 6265 6342 102024490 102024414 7.500000e-25 126.0
13 TraesCS5B01G290900 chr5A 94.134 2830 99 23 4311 7122 502375199 502377979 0.000000e+00 4244.0
14 TraesCS5B01G290900 chr5A 95.056 2670 113 10 1 2655 502371451 502374116 0.000000e+00 4181.0
15 TraesCS5B01G290900 chr5A 95.437 1030 43 3 3048 4075 502374112 502375139 0.000000e+00 1639.0
16 TraesCS5B01G290900 chr5A 93.377 302 20 0 6564 6865 502383041 502383342 1.410000e-121 448.0
17 TraesCS5B01G290900 chr5A 92.414 145 7 4 2894 3036 471306723 471306581 3.370000e-48 204.0
18 TraesCS5B01G290900 chr5A 85.294 68 9 1 6861 6928 502383359 502383425 1.280000e-07 69.4
19 TraesCS5B01G290900 chr5A 97.368 38 1 0 3017 3054 657059806 657059843 1.660000e-06 65.8
20 TraesCS5B01G290900 chr1A 93.012 1245 53 9 4311 5541 16516605 16515381 0.000000e+00 1786.0
21 TraesCS5B01G290900 chr1A 91.980 798 44 7 3265 4050 16517398 16516609 0.000000e+00 1101.0
22 TraesCS5B01G290900 chr1A 90.798 163 8 3 2894 3050 543930994 543930833 2.010000e-50 211.0
23 TraesCS5B01G290900 chr1A 93.590 78 4 1 6265 6342 16515334 16515258 1.620000e-21 115.0
24 TraesCS5B01G290900 chr1A 94.444 54 0 2 2840 2892 30564819 30564768 5.920000e-11 80.5
25 TraesCS5B01G290900 chr1D 95.282 657 26 2 4887 5542 452419556 452420208 0.000000e+00 1037.0
26 TraesCS5B01G290900 chr1D 91.525 59 2 3 2849 2906 402437782 402437838 2.130000e-10 78.7
27 TraesCS5B01G290900 chr1D 92.727 55 3 1 2852 2906 433912603 433912656 2.130000e-10 78.7
28 TraesCS5B01G290900 chr1D 100.000 34 0 0 3017 3050 9875477 9875510 5.960000e-06 63.9
29 TraesCS5B01G290900 chrUn 83.780 709 65 23 6449 7122 94934996 94934303 1.690000e-175 627.0
30 TraesCS5B01G290900 chrUn 81.223 703 69 26 6466 7122 314310426 314311111 6.370000e-140 508.0
31 TraesCS5B01G290900 chr7A 83.550 693 69 20 6449 7111 725248527 725247850 2.200000e-169 606.0
32 TraesCS5B01G290900 chr7A 99.153 118 1 0 2890 3007 291727739 291727856 5.600000e-51 213.0
33 TraesCS5B01G290900 chr7A 97.581 124 2 1 2884 3007 699840325 699840447 2.010000e-50 211.0
34 TraesCS5B01G290900 chr7A 83.237 173 22 5 2672 2841 616737690 616737522 1.240000e-32 152.0
35 TraesCS5B01G290900 chr7A 92.308 65 5 0 6058 6122 260907727 260907791 7.610000e-15 93.5
36 TraesCS5B01G290900 chr7A 97.143 35 1 0 3017 3051 700690096 700690130 7.720000e-05 60.2
37 TraesCS5B01G290900 chr2A 83.122 711 71 15 6449 7122 687055667 687056365 2.840000e-168 603.0
38 TraesCS5B01G290900 chr2A 98.361 122 1 1 2890 3011 105258100 105258220 5.600000e-51 213.0
39 TraesCS5B01G290900 chr2B 82.902 696 72 16 6449 7108 711220857 711221541 3.700000e-162 582.0
40 TraesCS5B01G290900 chr2B 82.344 691 73 21 6466 7122 38894610 38893935 8.070000e-154 555.0
41 TraesCS5B01G290900 chr2B 84.794 559 47 17 6330 6865 697550152 697550695 1.760000e-145 527.0
42 TraesCS5B01G290900 chr2B 96.809 188 6 0 2654 2841 556426875 556426688 1.490000e-81 315.0
43 TraesCS5B01G290900 chr2B 87.374 198 23 1 6923 7120 697550797 697550992 7.190000e-55 226.0
44 TraesCS5B01G290900 chr2B 91.772 158 11 2 2894 3050 522079088 522078932 1.200000e-52 219.0
45 TraesCS5B01G290900 chr4A 83.929 560 49 22 6330 6865 492381724 492381182 1.380000e-136 497.0
46 TraesCS5B01G290900 chr4A 80.615 650 73 28 6510 7122 675184065 675184698 3.030000e-123 453.0
47 TraesCS5B01G290900 chr4A 80.776 593 75 27 6547 7120 279619172 279619744 1.840000e-115 427.0
48 TraesCS5B01G290900 chr4A 98.400 125 0 2 2894 3018 365637329 365637207 1.200000e-52 219.0
49 TraesCS5B01G290900 chr4A 99.174 121 1 0 2890 3010 433912476 433912596 1.200000e-52 219.0
50 TraesCS5B01G290900 chr4A 91.195 159 11 3 2894 3050 657204792 657204635 5.600000e-51 213.0
51 TraesCS5B01G290900 chr4A 86.885 183 22 1 6938 7120 492381066 492380886 3.370000e-48 204.0
52 TraesCS5B01G290900 chr6B 98.404 188 3 0 2654 2841 503998930 503998743 1.480000e-86 331.0
53 TraesCS5B01G290900 chr6B 93.617 188 11 1 2654 2841 96682422 96682236 5.440000e-71 279.0
54 TraesCS5B01G290900 chr6B 93.194 191 9 1 2654 2840 40886213 40886023 1.960000e-70 278.0
55 TraesCS5B01G290900 chr3B 96.296 189 6 1 2654 2841 71028551 71028739 6.940000e-80 309.0
56 TraesCS5B01G290900 chr3B 85.714 189 9 5 2653 2841 47019751 47019581 4.390000e-42 183.0
57 TraesCS5B01G290900 chr3B 92.727 55 4 0 2840 2894 104711982 104712036 5.920000e-11 80.5
58 TraesCS5B01G290900 chr3B 90.323 62 3 3 2845 2906 740043012 740043070 2.130000e-10 78.7
59 TraesCS5B01G290900 chr4B 95.833 192 4 1 2654 2841 79355491 79355682 2.500000e-79 307.0
60 TraesCS5B01G290900 chr4B 95.745 188 8 0 2654 2841 464882782 464882969 3.230000e-78 303.0
61 TraesCS5B01G290900 chr4B 94.595 111 6 0 2415 2525 440301952 440301842 9.500000e-39 172.0
62 TraesCS5B01G290900 chr3A 98.387 124 2 0 2894 3017 336266355 336266232 1.200000e-52 219.0
63 TraesCS5B01G290900 chr3A 98.387 124 1 1 2894 3017 208067624 208067502 4.330000e-52 217.0
64 TraesCS5B01G290900 chr3A 98.347 121 2 0 2890 3010 680805643 680805523 5.600000e-51 213.0
65 TraesCS5B01G290900 chr7B 99.167 120 1 0 2890 3009 667178803 667178922 4.330000e-52 217.0
66 TraesCS5B01G290900 chr7B 90.769 65 6 0 6058 6122 220134817 220134881 3.540000e-13 87.9
67 TraesCS5B01G290900 chr7B 89.394 66 3 4 2842 2906 566639065 566639127 5.920000e-11 80.5
68 TraesCS5B01G290900 chr7B 97.368 38 1 0 3017 3054 714506033 714506070 1.660000e-06 65.8
69 TraesCS5B01G290900 chr6A 98.361 122 1 1 2890 3011 566542273 566542393 5.600000e-51 213.0
70 TraesCS5B01G290900 chr1B 99.153 118 1 0 2890 3007 2441472 2441589 5.600000e-51 213.0
71 TraesCS5B01G290900 chr1B 92.793 111 8 0 2415 2525 14711951 14712061 2.060000e-35 161.0
72 TraesCS5B01G290900 chr7D 93.846 65 4 0 6058 6122 244773951 244774015 1.640000e-16 99.0
73 TraesCS5B01G290900 chr7D 88.889 63 5 2 2833 2894 184573340 184573401 7.660000e-10 76.8
74 TraesCS5B01G290900 chr4D 97.959 49 1 0 2844 2892 371926806 371926854 1.270000e-12 86.1
75 TraesCS5B01G290900 chr2D 97.917 48 1 0 2845 2892 267707172 267707125 4.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G290900 chr5B 476796451 476803572 7121 False 6361.000000 7529 100.000000 1 7122 2 chr5B.!!$F4 7121
1 TraesCS5B01G290900 chr5B 476808194 476808771 577 False 568.000000 568 85.052000 6564 7122 1 chr5B.!!$F2 558
2 TraesCS5B01G290900 chr5D 396801294 396807830 6536 False 3474.333333 4482 95.682000 1 7122 3 chr5D.!!$F2 7121
3 TraesCS5B01G290900 chr5D 102024414 102026546 2132 True 1023.666667 1855 93.970000 3265 6342 3 chr5D.!!$R1 3077
4 TraesCS5B01G290900 chr5A 502371451 502377979 6528 False 3354.666667 4244 94.875667 1 7122 3 chr5A.!!$F2 7121
5 TraesCS5B01G290900 chr1A 16515258 16517398 2140 True 1000.666667 1786 92.860667 3265 6342 3 chr1A.!!$R3 3077
6 TraesCS5B01G290900 chr1D 452419556 452420208 652 False 1037.000000 1037 95.282000 4887 5542 1 chr1D.!!$F4 655
7 TraesCS5B01G290900 chrUn 94934303 94934996 693 True 627.000000 627 83.780000 6449 7122 1 chrUn.!!$R1 673
8 TraesCS5B01G290900 chrUn 314310426 314311111 685 False 508.000000 508 81.223000 6466 7122 1 chrUn.!!$F1 656
9 TraesCS5B01G290900 chr7A 725247850 725248527 677 True 606.000000 606 83.550000 6449 7111 1 chr7A.!!$R2 662
10 TraesCS5B01G290900 chr2A 687055667 687056365 698 False 603.000000 603 83.122000 6449 7122 1 chr2A.!!$F2 673
11 TraesCS5B01G290900 chr2B 711220857 711221541 684 False 582.000000 582 82.902000 6449 7108 1 chr2B.!!$F1 659
12 TraesCS5B01G290900 chr2B 38893935 38894610 675 True 555.000000 555 82.344000 6466 7122 1 chr2B.!!$R1 656
13 TraesCS5B01G290900 chr2B 697550152 697550992 840 False 376.500000 527 86.084000 6330 7120 2 chr2B.!!$F2 790
14 TraesCS5B01G290900 chr4A 675184065 675184698 633 False 453.000000 453 80.615000 6510 7122 1 chr4A.!!$F3 612
15 TraesCS5B01G290900 chr4A 279619172 279619744 572 False 427.000000 427 80.776000 6547 7120 1 chr4A.!!$F1 573
16 TraesCS5B01G290900 chr4A 492380886 492381724 838 True 350.500000 497 85.407000 6330 7120 2 chr4A.!!$R3 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 302 0.961753 GGCACCCTTTCTCCTTTGTG 59.038 55.000 0.0 0.00 0.00 3.33 F
1629 1656 0.946221 CCCACACTGCGTCTCTTGAC 60.946 60.000 0.0 0.00 39.70 3.18 F
2112 2139 0.259938 ATTGGGTCCCAGAATCTGCC 59.740 55.000 11.4 1.14 33.81 4.85 F
2778 2806 0.029567 GGCGTCTCTGATCACCGTAG 59.970 60.000 0.0 0.00 0.00 3.51 F
2837 2865 0.032130 TATCTGATTCACGCTCCGCC 59.968 55.000 0.0 0.00 0.00 6.13 F
2846 2874 0.102481 CACGCTCCGCCACTTACTAT 59.898 55.000 0.0 0.00 0.00 2.12 F
3599 3636 0.179018 ACTGTTGCCCTTGACAGGTC 60.179 55.000 8.2 0.00 45.78 3.85 F
5056 5106 1.133167 TCAGAGAAGGGAGGTCACACA 60.133 52.381 0.0 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2139 0.819259 CAATGCGTGGGGATACAGGG 60.819 60.000 0.00 0.00 39.74 4.45 R
2759 2787 0.029567 CTACGGTGATCAGAGACGCC 59.970 60.000 0.00 0.00 0.00 5.68 R
2913 2941 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18 R
4471 4515 1.068472 CAGCCAGACGATCGGTATACC 60.068 57.143 20.98 12.27 0.00 2.73 R
4478 4522 1.132453 TCAGTTACAGCCAGACGATCG 59.868 52.381 14.88 14.88 0.00 3.69 R
4837 4887 1.078143 ACTGGCATCGCTTCCTTCC 60.078 57.895 0.00 0.00 0.00 3.46 R
5588 5650 0.449388 CCTTCTCGGCATGCACTTTC 59.551 55.000 21.36 0.00 0.00 2.62 R
6691 6803 0.106819 ATCAGGCAGCTCATGGTTCC 60.107 55.000 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.830408 CGGAGAAGGGGATCGCTCT 60.830 63.158 9.90 5.51 0.00 4.09
174 175 3.092301 CCCAATCTGGTTTCCCTCTTTC 58.908 50.000 0.00 0.00 35.17 2.62
204 205 1.146263 GAAATCCCCCGATCGCTGT 59.854 57.895 10.32 0.00 0.00 4.40
296 302 0.961753 GGCACCCTTTCTCCTTTGTG 59.038 55.000 0.00 0.00 0.00 3.33
407 417 2.854777 CGCTTTCAGATCGTTCCTAGTG 59.145 50.000 0.00 0.00 0.00 2.74
409 419 4.246458 GCTTTCAGATCGTTCCTAGTGTT 58.754 43.478 0.00 0.00 0.00 3.32
410 420 5.408356 GCTTTCAGATCGTTCCTAGTGTTA 58.592 41.667 0.00 0.00 0.00 2.41
414 424 4.275196 TCAGATCGTTCCTAGTGTTATCGG 59.725 45.833 0.00 0.00 0.00 4.18
423 433 1.557099 AGTGTTATCGGTCTGAGGCA 58.443 50.000 0.00 0.00 0.00 4.75
467 489 6.376581 GCCCATAGATTTAGCTGCAAGATTAT 59.623 38.462 1.02 0.00 34.07 1.28
574 596 7.800155 TCATTGTTGTTTCTGATGTGTAGAA 57.200 32.000 0.00 0.00 32.64 2.10
621 644 5.564550 ACTGTTTCTGCAGAGATAAATGGT 58.435 37.500 17.43 8.32 39.62 3.55
637 661 8.717717 AGATAAATGGTCATAGGACTCAATTCA 58.282 33.333 7.56 0.00 43.77 2.57
638 662 8.915057 ATAAATGGTCATAGGACTCAATTCAG 57.085 34.615 7.56 0.00 43.77 3.02
737 761 4.144297 TGTTGCTTGTTCAGGCTCTAAAT 58.856 39.130 8.25 0.00 0.00 1.40
798 822 2.233605 ATTGGCGGTTCGACGATGGA 62.234 55.000 0.00 0.00 37.63 3.41
804 828 2.268298 CGGTTCGACGATGGAATCTTT 58.732 47.619 0.00 0.00 42.58 2.52
819 843 6.189859 TGGAATCTTTACTGCTGATGGATTT 58.810 36.000 0.00 0.00 0.00 2.17
850 874 1.471684 CCTCAATGCAGTTGAAGCCTC 59.528 52.381 11.14 0.00 45.74 4.70
959 983 5.189928 TCCAAATTAGCGCATTTTAGGAGA 58.810 37.500 11.47 0.00 0.00 3.71
1081 1108 6.887013 TGTGTAGTTAGTCCTTGTTTTGGTA 58.113 36.000 0.00 0.00 0.00 3.25
1142 1169 3.195396 GGCTCAAATAACAGGGCATTTCA 59.805 43.478 0.00 0.00 0.00 2.69
1197 1224 4.437239 CTGCGTTAGATTCTCTGAATGGT 58.563 43.478 0.00 0.00 0.00 3.55
1268 1295 3.173151 CCCAAGGCCTAAAACCTGATTT 58.827 45.455 5.16 0.00 37.67 2.17
1280 1307 5.728637 AAACCTGATTTGAGGAATCCAAC 57.271 39.130 0.61 0.00 42.90 3.77
1332 1359 0.972471 TTCAGATGCCTGCGAGGAGA 60.972 55.000 6.40 0.00 37.67 3.71
1402 1429 4.178545 ACAATGGTAGCTGACAAAATGC 57.821 40.909 0.00 0.00 0.00 3.56
1546 1573 2.057137 TATTGGTTCTGCTGATGCCC 57.943 50.000 10.65 5.33 38.71 5.36
1563 1590 1.738030 GCCCAAATGCAGCATTCTGAC 60.738 52.381 21.10 8.06 42.95 3.51
1576 1603 3.445096 GCATTCTGACCAAGTTAGGCAAT 59.555 43.478 0.00 0.00 0.00 3.56
1629 1656 0.946221 CCCACACTGCGTCTCTTGAC 60.946 60.000 0.00 0.00 39.70 3.18
1732 1759 2.128771 ATTCACCGATGGTCCTTTGG 57.871 50.000 9.17 9.17 31.02 3.28
1763 1790 5.738909 CAGGGAGTCATATTCTTGTTCAGT 58.261 41.667 0.00 0.00 0.00 3.41
1806 1833 3.295093 TGTGAATCTCAAAAGGGTTGCA 58.705 40.909 0.00 0.00 0.00 4.08
1833 1860 4.589908 CTGTCCCACTACCAAAATTAGCT 58.410 43.478 0.00 0.00 0.00 3.32
1845 1872 2.938956 AATTAGCTCATTCCCCTCCG 57.061 50.000 0.00 0.00 0.00 4.63
1926 1953 6.815089 TCAGAGAGATTTAGCCAGAGAAATC 58.185 40.000 0.00 0.00 40.74 2.17
1956 1983 7.421530 TGATTTTCTAGACTTGAAGGAAACG 57.578 36.000 0.00 0.00 0.00 3.60
1965 1992 5.581085 AGACTTGAAGGAAACGGAAATATCG 59.419 40.000 0.00 0.00 0.00 2.92
1975 2002 6.480981 GGAAACGGAAATATCGATAGGTGAAA 59.519 38.462 11.41 0.00 0.00 2.69
1979 2006 6.990349 ACGGAAATATCGATAGGTGAAAATGT 59.010 34.615 11.41 0.00 0.00 2.71
2060 2087 7.552458 TGCATGTTAACTTTGATACGATGAT 57.448 32.000 7.22 0.00 0.00 2.45
2112 2139 0.259938 ATTGGGTCCCAGAATCTGCC 59.740 55.000 11.40 1.14 33.81 4.85
2271 2298 7.601886 GTGTCTTTTACTACTTTCCTCCTAACC 59.398 40.741 0.00 0.00 0.00 2.85
2289 2316 1.937899 ACCGAGTTTTTCAGTTGGACG 59.062 47.619 0.00 0.00 33.67 4.79
2291 2318 1.597663 CGAGTTTTTCAGTTGGACGCT 59.402 47.619 0.00 0.00 0.00 5.07
2293 2320 2.354821 GAGTTTTTCAGTTGGACGCTGT 59.645 45.455 0.00 0.00 35.60 4.40
2299 2326 1.137282 TCAGTTGGACGCTGTACACAA 59.863 47.619 0.00 0.00 35.60 3.33
2355 2383 6.839124 TGCAGAATATTGATGGTTTTCTGT 57.161 33.333 11.34 0.00 43.21 3.41
2372 2400 3.234353 TCTGTCTGTCCTGAATGTGACT 58.766 45.455 0.00 0.00 32.67 3.41
2609 2637 7.448469 CAGCTGGTACTAAATTATTGGCCTTAT 59.552 37.037 5.57 0.00 0.00 1.73
2653 2681 8.153479 TGATGAATTGGTGCATTACTATGTAC 57.847 34.615 0.00 0.00 43.97 2.90
2654 2682 7.772757 TGATGAATTGGTGCATTACTATGTACA 59.227 33.333 0.00 0.00 45.76 2.90
2655 2683 7.552458 TGAATTGGTGCATTACTATGTACAG 57.448 36.000 0.33 0.00 45.76 2.74
2656 2684 7.109501 TGAATTGGTGCATTACTATGTACAGT 58.890 34.615 0.33 0.00 45.76 3.55
2657 2685 6.925610 ATTGGTGCATTACTATGTACAGTG 57.074 37.500 0.33 0.00 45.76 3.66
2658 2686 4.765273 TGGTGCATTACTATGTACAGTGG 58.235 43.478 0.33 0.00 45.76 4.00
2659 2687 3.560068 GGTGCATTACTATGTACAGTGGC 59.440 47.826 0.33 2.20 45.76 5.01
2660 2688 3.245284 GTGCATTACTATGTACAGTGGCG 59.755 47.826 0.33 0.00 44.08 5.69
2661 2689 2.800544 GCATTACTATGTACAGTGGCGG 59.199 50.000 0.33 0.00 34.12 6.13
2662 2690 3.491964 GCATTACTATGTACAGTGGCGGA 60.492 47.826 0.33 0.00 34.12 5.54
2663 2691 4.299155 CATTACTATGTACAGTGGCGGAG 58.701 47.826 0.33 0.00 0.00 4.63
2686 2714 4.055227 TGGGGACAATTCCGGGCC 62.055 66.667 0.00 0.00 43.94 5.80
2687 2715 3.739613 GGGGACAATTCCGGGCCT 61.740 66.667 0.84 0.00 43.94 5.19
2688 2716 2.359011 GGGACAATTCCGGGCCTT 59.641 61.111 0.84 0.00 43.94 4.35
2689 2717 2.052104 GGGACAATTCCGGGCCTTG 61.052 63.158 0.84 5.80 43.94 3.61
2690 2718 2.052104 GGACAATTCCGGGCCTTGG 61.052 63.158 0.84 5.29 29.98 3.61
2691 2719 2.679996 ACAATTCCGGGCCTTGGC 60.680 61.111 0.84 2.49 0.00 4.52
2692 2720 3.460868 CAATTCCGGGCCTTGGCC 61.461 66.667 21.74 21.74 45.38 5.36
2693 2721 4.777854 AATTCCGGGCCTTGGCCC 62.778 66.667 33.95 33.95 46.16 5.80
2721 2749 5.565455 TCCAAGAGGAAAATTTGCCAAAT 57.435 34.783 17.92 0.00 42.23 2.32
2722 2750 6.678568 TCCAAGAGGAAAATTTGCCAAATA 57.321 33.333 17.92 0.00 42.23 1.40
2723 2751 6.463360 TCCAAGAGGAAAATTTGCCAAATAC 58.537 36.000 17.92 3.58 42.23 1.89
2724 2752 6.269769 TCCAAGAGGAAAATTTGCCAAATACT 59.730 34.615 17.92 5.68 42.23 2.12
2725 2753 6.591448 CCAAGAGGAAAATTTGCCAAATACTC 59.409 38.462 17.92 4.96 36.89 2.59
2726 2754 7.381323 CAAGAGGAAAATTTGCCAAATACTCT 58.619 34.615 17.92 15.14 33.36 3.24
2727 2755 7.544804 AGAGGAAAATTTGCCAAATACTCTT 57.455 32.000 17.92 7.74 30.57 2.85
2728 2756 8.650143 AGAGGAAAATTTGCCAAATACTCTTA 57.350 30.769 17.92 0.00 30.57 2.10
2729 2757 9.259832 AGAGGAAAATTTGCCAAATACTCTTAT 57.740 29.630 17.92 4.03 30.57 1.73
2730 2758 9.521503 GAGGAAAATTTGCCAAATACTCTTATC 57.478 33.333 17.92 0.00 0.00 1.75
2731 2759 9.259832 AGGAAAATTTGCCAAATACTCTTATCT 57.740 29.630 17.92 0.00 0.00 1.98
2737 2765 7.969536 TTGCCAAATACTCTTATCTATCTGC 57.030 36.000 0.00 0.00 0.00 4.26
2738 2766 7.308450 TGCCAAATACTCTTATCTATCTGCT 57.692 36.000 0.00 0.00 0.00 4.24
2739 2767 8.422577 TGCCAAATACTCTTATCTATCTGCTA 57.577 34.615 0.00 0.00 0.00 3.49
2740 2768 8.870116 TGCCAAATACTCTTATCTATCTGCTAA 58.130 33.333 0.00 0.00 0.00 3.09
2741 2769 9.883142 GCCAAATACTCTTATCTATCTGCTAAT 57.117 33.333 0.00 0.00 0.00 1.73
2747 2775 8.421249 ACTCTTATCTATCTGCTAATTGCTCT 57.579 34.615 0.00 0.00 43.37 4.09
2748 2776 9.527157 ACTCTTATCTATCTGCTAATTGCTCTA 57.473 33.333 0.00 0.00 43.37 2.43
2749 2777 9.787532 CTCTTATCTATCTGCTAATTGCTCTAC 57.212 37.037 0.00 0.00 43.37 2.59
2750 2778 9.527157 TCTTATCTATCTGCTAATTGCTCTACT 57.473 33.333 0.00 0.00 43.37 2.57
2755 2783 8.744652 TCTATCTGCTAATTGCTCTACTAATCC 58.255 37.037 0.00 0.00 43.37 3.01
2756 2784 6.985653 TCTGCTAATTGCTCTACTAATCCT 57.014 37.500 0.00 0.00 43.37 3.24
2757 2785 6.987386 TCTGCTAATTGCTCTACTAATCCTC 58.013 40.000 0.00 0.00 43.37 3.71
2758 2786 6.780031 TCTGCTAATTGCTCTACTAATCCTCT 59.220 38.462 0.00 0.00 43.37 3.69
2759 2787 6.753180 TGCTAATTGCTCTACTAATCCTCTG 58.247 40.000 0.00 0.00 43.37 3.35
2760 2788 6.162777 GCTAATTGCTCTACTAATCCTCTGG 58.837 44.000 0.00 0.00 38.95 3.86
2761 2789 4.615588 ATTGCTCTACTAATCCTCTGGC 57.384 45.455 0.00 0.00 0.00 4.85
2762 2790 1.957177 TGCTCTACTAATCCTCTGGCG 59.043 52.381 0.00 0.00 0.00 5.69
2763 2791 1.957877 GCTCTACTAATCCTCTGGCGT 59.042 52.381 0.00 0.00 0.00 5.68
2764 2792 2.030628 GCTCTACTAATCCTCTGGCGTC 60.031 54.545 0.00 0.00 0.00 5.19
2765 2793 3.482436 CTCTACTAATCCTCTGGCGTCT 58.518 50.000 0.00 0.00 0.00 4.18
2766 2794 3.478509 TCTACTAATCCTCTGGCGTCTC 58.521 50.000 0.00 0.00 0.00 3.36
2767 2795 2.445682 ACTAATCCTCTGGCGTCTCT 57.554 50.000 0.00 0.00 0.00 3.10
2768 2796 2.028130 ACTAATCCTCTGGCGTCTCTG 58.972 52.381 0.00 0.00 0.00 3.35
2769 2797 2.302260 CTAATCCTCTGGCGTCTCTGA 58.698 52.381 0.00 0.00 0.00 3.27
2770 2798 1.786937 AATCCTCTGGCGTCTCTGAT 58.213 50.000 0.00 0.00 0.00 2.90
2771 2799 1.327303 ATCCTCTGGCGTCTCTGATC 58.673 55.000 0.00 0.00 0.00 2.92
2772 2800 0.034089 TCCTCTGGCGTCTCTGATCA 60.034 55.000 0.00 0.00 0.00 2.92
2773 2801 0.102120 CCTCTGGCGTCTCTGATCAC 59.898 60.000 0.00 0.00 0.00 3.06
2774 2802 0.102120 CTCTGGCGTCTCTGATCACC 59.898 60.000 0.00 0.00 0.00 4.02
2775 2803 1.226802 CTGGCGTCTCTGATCACCG 60.227 63.158 0.00 0.00 0.00 4.94
2776 2804 1.938657 CTGGCGTCTCTGATCACCGT 61.939 60.000 0.00 0.00 0.00 4.83
2777 2805 0.678684 TGGCGTCTCTGATCACCGTA 60.679 55.000 0.00 0.00 0.00 4.02
2778 2806 0.029567 GGCGTCTCTGATCACCGTAG 59.970 60.000 0.00 0.00 0.00 3.51
2779 2807 0.592754 GCGTCTCTGATCACCGTAGC 60.593 60.000 0.00 0.00 0.00 3.58
2780 2808 0.029567 CGTCTCTGATCACCGTAGCC 59.970 60.000 0.00 0.00 0.00 3.93
2781 2809 1.394618 GTCTCTGATCACCGTAGCCT 58.605 55.000 0.00 0.00 0.00 4.58
2782 2810 1.751924 GTCTCTGATCACCGTAGCCTT 59.248 52.381 0.00 0.00 0.00 4.35
2783 2811 2.166664 GTCTCTGATCACCGTAGCCTTT 59.833 50.000 0.00 0.00 0.00 3.11
2784 2812 2.832129 TCTCTGATCACCGTAGCCTTTT 59.168 45.455 0.00 0.00 0.00 2.27
2785 2813 3.119101 TCTCTGATCACCGTAGCCTTTTC 60.119 47.826 0.00 0.00 0.00 2.29
2786 2814 2.832129 TCTGATCACCGTAGCCTTTTCT 59.168 45.455 0.00 0.00 0.00 2.52
2787 2815 4.021229 TCTGATCACCGTAGCCTTTTCTA 58.979 43.478 0.00 0.00 0.00 2.10
2788 2816 4.649674 TCTGATCACCGTAGCCTTTTCTAT 59.350 41.667 0.00 0.00 0.00 1.98
2789 2817 4.693283 TGATCACCGTAGCCTTTTCTATG 58.307 43.478 0.00 0.00 0.00 2.23
2790 2818 4.161565 TGATCACCGTAGCCTTTTCTATGT 59.838 41.667 0.00 0.00 0.00 2.29
2791 2819 4.119442 TCACCGTAGCCTTTTCTATGTC 57.881 45.455 0.00 0.00 0.00 3.06
2792 2820 3.512329 TCACCGTAGCCTTTTCTATGTCA 59.488 43.478 0.00 0.00 0.00 3.58
2793 2821 4.161565 TCACCGTAGCCTTTTCTATGTCAT 59.838 41.667 0.00 0.00 0.00 3.06
2794 2822 5.361571 TCACCGTAGCCTTTTCTATGTCATA 59.638 40.000 0.00 0.00 0.00 2.15
2795 2823 6.041637 TCACCGTAGCCTTTTCTATGTCATAT 59.958 38.462 0.00 0.00 0.00 1.78
2796 2824 7.231925 TCACCGTAGCCTTTTCTATGTCATATA 59.768 37.037 0.00 0.00 0.00 0.86
2797 2825 7.328737 CACCGTAGCCTTTTCTATGTCATATAC 59.671 40.741 0.00 0.00 0.00 1.47
2798 2826 7.014905 ACCGTAGCCTTTTCTATGTCATATACA 59.985 37.037 0.00 0.00 43.86 2.29
2799 2827 7.328737 CCGTAGCCTTTTCTATGTCATATACAC 59.671 40.741 0.00 0.00 42.09 2.90
2800 2828 8.082852 CGTAGCCTTTTCTATGTCATATACACT 58.917 37.037 0.00 0.00 42.09 3.55
2801 2829 9.413048 GTAGCCTTTTCTATGTCATATACACTC 57.587 37.037 0.00 0.00 42.09 3.51
2802 2830 8.023021 AGCCTTTTCTATGTCATATACACTCA 57.977 34.615 0.00 0.00 42.09 3.41
2803 2831 8.147058 AGCCTTTTCTATGTCATATACACTCAG 58.853 37.037 0.00 0.00 42.09 3.35
2804 2832 7.928706 GCCTTTTCTATGTCATATACACTCAGT 59.071 37.037 0.00 0.00 42.09 3.41
2805 2833 9.823647 CCTTTTCTATGTCATATACACTCAGTT 57.176 33.333 0.00 0.00 42.09 3.16
2807 2835 9.599866 TTTTCTATGTCATATACACTCAGTTGG 57.400 33.333 0.00 0.00 42.09 3.77
2808 2836 6.749139 TCTATGTCATATACACTCAGTTGGC 58.251 40.000 0.00 0.00 42.09 4.52
2809 2837 4.137116 TGTCATATACACTCAGTTGGCC 57.863 45.455 0.00 0.00 31.43 5.36
2810 2838 3.118408 TGTCATATACACTCAGTTGGCCC 60.118 47.826 0.00 0.00 31.43 5.80
2811 2839 2.438021 TCATATACACTCAGTTGGCCCC 59.562 50.000 0.00 0.00 0.00 5.80
2812 2840 1.209621 TATACACTCAGTTGGCCCCC 58.790 55.000 0.00 0.00 0.00 5.40
2813 2841 0.550147 ATACACTCAGTTGGCCCCCT 60.550 55.000 0.00 0.00 0.00 4.79
2814 2842 1.198759 TACACTCAGTTGGCCCCCTC 61.199 60.000 0.00 0.00 0.00 4.30
2815 2843 2.208349 ACTCAGTTGGCCCCCTCT 59.792 61.111 0.00 0.00 0.00 3.69
2816 2844 0.909610 CACTCAGTTGGCCCCCTCTA 60.910 60.000 0.00 0.00 0.00 2.43
2817 2845 0.178873 ACTCAGTTGGCCCCCTCTAA 60.179 55.000 0.00 0.00 0.00 2.10
2818 2846 1.216990 CTCAGTTGGCCCCCTCTAAT 58.783 55.000 0.00 0.00 0.00 1.73
2819 2847 2.293586 ACTCAGTTGGCCCCCTCTAATA 60.294 50.000 0.00 0.00 0.00 0.98
2820 2848 2.982488 CTCAGTTGGCCCCCTCTAATAT 59.018 50.000 0.00 0.00 0.00 1.28
2821 2849 2.979678 TCAGTTGGCCCCCTCTAATATC 59.020 50.000 0.00 0.00 0.00 1.63
2822 2850 2.982488 CAGTTGGCCCCCTCTAATATCT 59.018 50.000 0.00 0.00 0.00 1.98
2823 2851 2.982488 AGTTGGCCCCCTCTAATATCTG 59.018 50.000 0.00 0.00 0.00 2.90
2824 2852 2.979678 GTTGGCCCCCTCTAATATCTGA 59.020 50.000 0.00 0.00 0.00 3.27
2825 2853 3.585077 TGGCCCCCTCTAATATCTGAT 57.415 47.619 0.00 0.00 0.00 2.90
2826 2854 3.886938 TGGCCCCCTCTAATATCTGATT 58.113 45.455 0.00 0.00 0.00 2.57
2827 2855 3.846588 TGGCCCCCTCTAATATCTGATTC 59.153 47.826 0.00 0.00 0.00 2.52
2828 2856 3.846588 GGCCCCCTCTAATATCTGATTCA 59.153 47.826 0.00 0.00 0.00 2.57
2829 2857 4.323868 GGCCCCCTCTAATATCTGATTCAC 60.324 50.000 0.00 0.00 0.00 3.18
2830 2858 4.621747 GCCCCCTCTAATATCTGATTCACG 60.622 50.000 0.00 0.00 0.00 4.35
2831 2859 4.499183 CCCCTCTAATATCTGATTCACGC 58.501 47.826 0.00 0.00 0.00 5.34
2832 2860 4.221703 CCCCTCTAATATCTGATTCACGCT 59.778 45.833 0.00 0.00 0.00 5.07
2833 2861 5.406649 CCCTCTAATATCTGATTCACGCTC 58.593 45.833 0.00 0.00 0.00 5.03
2834 2862 5.406649 CCTCTAATATCTGATTCACGCTCC 58.593 45.833 0.00 0.00 0.00 4.70
2835 2863 5.048153 TCTAATATCTGATTCACGCTCCG 57.952 43.478 0.00 0.00 0.00 4.63
2836 2864 2.071688 ATATCTGATTCACGCTCCGC 57.928 50.000 0.00 0.00 0.00 5.54
2837 2865 0.032130 TATCTGATTCACGCTCCGCC 59.968 55.000 0.00 0.00 0.00 6.13
2838 2866 1.960040 ATCTGATTCACGCTCCGCCA 61.960 55.000 0.00 0.00 0.00 5.69
2839 2867 2.434185 TGATTCACGCTCCGCCAC 60.434 61.111 0.00 0.00 0.00 5.01
2840 2868 2.125512 GATTCACGCTCCGCCACT 60.126 61.111 0.00 0.00 0.00 4.00
2841 2869 1.741770 GATTCACGCTCCGCCACTT 60.742 57.895 0.00 0.00 0.00 3.16
2842 2870 0.459585 GATTCACGCTCCGCCACTTA 60.460 55.000 0.00 0.00 0.00 2.24
2843 2871 0.739813 ATTCACGCTCCGCCACTTAC 60.740 55.000 0.00 0.00 0.00 2.34
2844 2872 1.812686 TTCACGCTCCGCCACTTACT 61.813 55.000 0.00 0.00 0.00 2.24
2845 2873 0.961857 TCACGCTCCGCCACTTACTA 60.962 55.000 0.00 0.00 0.00 1.82
2846 2874 0.102481 CACGCTCCGCCACTTACTAT 59.898 55.000 0.00 0.00 0.00 2.12
2847 2875 0.102481 ACGCTCCGCCACTTACTATG 59.898 55.000 0.00 0.00 0.00 2.23
2848 2876 0.102481 CGCTCCGCCACTTACTATGT 59.898 55.000 0.00 0.00 0.00 2.29
2849 2877 1.335810 CGCTCCGCCACTTACTATGTA 59.664 52.381 0.00 0.00 0.00 2.29
2850 2878 2.604855 CGCTCCGCCACTTACTATGTAG 60.605 54.545 0.00 0.00 0.00 2.74
2851 2879 2.361438 GCTCCGCCACTTACTATGTAGT 59.639 50.000 0.00 0.00 40.24 2.73
2852 2880 3.567164 GCTCCGCCACTTACTATGTAGTA 59.433 47.826 0.00 0.00 37.73 1.82
2853 2881 4.556302 GCTCCGCCACTTACTATGTAGTAC 60.556 50.000 0.00 0.00 38.43 2.73
2854 2882 4.785301 TCCGCCACTTACTATGTAGTACT 58.215 43.478 0.00 0.00 38.43 2.73
2855 2883 4.818546 TCCGCCACTTACTATGTAGTACTC 59.181 45.833 0.00 0.00 38.43 2.59
2856 2884 4.023365 CCGCCACTTACTATGTAGTACTCC 60.023 50.000 0.00 0.00 38.43 3.85
2857 2885 4.023365 CGCCACTTACTATGTAGTACTCCC 60.023 50.000 0.00 0.00 38.43 4.30
2858 2886 5.139001 GCCACTTACTATGTAGTACTCCCT 58.861 45.833 0.00 0.00 38.43 4.20
2859 2887 5.241285 GCCACTTACTATGTAGTACTCCCTC 59.759 48.000 0.00 0.00 38.43 4.30
2860 2888 5.769162 CCACTTACTATGTAGTACTCCCTCC 59.231 48.000 0.00 0.00 38.43 4.30
2861 2889 5.469421 CACTTACTATGTAGTACTCCCTCCG 59.531 48.000 0.00 0.00 38.43 4.63
2862 2890 5.131809 ACTTACTATGTAGTACTCCCTCCGT 59.868 44.000 0.00 0.00 38.43 4.69
2863 2891 4.084011 ACTATGTAGTACTCCCTCCGTC 57.916 50.000 0.00 0.00 34.13 4.79
2864 2892 2.361643 ATGTAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
2865 2893 0.257039 TGTAGTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
2866 2894 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2867 2895 1.133544 GTAGTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
2868 2896 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2869 2897 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2870 2898 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2871 2899 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2872 2900 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2873 2901 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2874 2902 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2875 2903 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2876 2904 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2877 2905 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2878 2906 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2879 2907 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2880 2908 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2881 2909 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2882 2910 5.711506 TCCGTCCCATAATATAAGAGCGTTA 59.288 40.000 0.00 0.00 0.00 3.18
2883 2911 6.379133 TCCGTCCCATAATATAAGAGCGTTAT 59.621 38.462 0.79 0.79 0.00 1.89
2884 2912 7.039882 CCGTCCCATAATATAAGAGCGTTATT 58.960 38.462 0.40 0.00 0.00 1.40
2885 2913 7.010183 CCGTCCCATAATATAAGAGCGTTATTG 59.990 40.741 0.40 0.00 0.00 1.90
2886 2914 7.758076 CGTCCCATAATATAAGAGCGTTATTGA 59.242 37.037 0.40 0.00 0.00 2.57
2887 2915 8.870879 GTCCCATAATATAAGAGCGTTATTGAC 58.129 37.037 0.40 0.00 0.00 3.18
2888 2916 8.590204 TCCCATAATATAAGAGCGTTATTGACA 58.410 33.333 0.40 0.00 0.00 3.58
2889 2917 8.656849 CCCATAATATAAGAGCGTTATTGACAC 58.343 37.037 0.40 0.00 0.00 3.67
2890 2918 9.424319 CCATAATATAAGAGCGTTATTGACACT 57.576 33.333 0.40 0.00 0.00 3.55
2897 2925 6.854496 AGAGCGTTATTGACACTAAAAACA 57.146 33.333 0.00 0.00 0.00 2.83
2898 2926 6.888430 AGAGCGTTATTGACACTAAAAACAG 58.112 36.000 0.00 0.00 0.00 3.16
2899 2927 5.449304 AGCGTTATTGACACTAAAAACAGC 58.551 37.500 0.00 0.00 0.00 4.40
2900 2928 4.615541 GCGTTATTGACACTAAAAACAGCC 59.384 41.667 0.00 0.00 0.00 4.85
2901 2929 5.562113 GCGTTATTGACACTAAAAACAGCCT 60.562 40.000 0.00 0.00 0.00 4.58
2902 2930 6.077838 CGTTATTGACACTAAAAACAGCCTC 58.922 40.000 0.00 0.00 0.00 4.70
2903 2931 6.073222 CGTTATTGACACTAAAAACAGCCTCT 60.073 38.462 0.00 0.00 0.00 3.69
2904 2932 7.519970 CGTTATTGACACTAAAAACAGCCTCTT 60.520 37.037 0.00 0.00 0.00 2.85
2905 2933 8.780249 GTTATTGACACTAAAAACAGCCTCTTA 58.220 33.333 0.00 0.00 0.00 2.10
2906 2934 6.613755 TTGACACTAAAAACAGCCTCTTAC 57.386 37.500 0.00 0.00 0.00 2.34
2907 2935 5.676552 TGACACTAAAAACAGCCTCTTACA 58.323 37.500 0.00 0.00 0.00 2.41
2908 2936 5.758296 TGACACTAAAAACAGCCTCTTACAG 59.242 40.000 0.00 0.00 0.00 2.74
2909 2937 5.925509 ACACTAAAAACAGCCTCTTACAGA 58.074 37.500 0.00 0.00 0.00 3.41
2910 2938 6.354130 ACACTAAAAACAGCCTCTTACAGAA 58.646 36.000 0.00 0.00 0.00 3.02
2911 2939 6.826741 ACACTAAAAACAGCCTCTTACAGAAA 59.173 34.615 0.00 0.00 0.00 2.52
2912 2940 7.502561 ACACTAAAAACAGCCTCTTACAGAAAT 59.497 33.333 0.00 0.00 0.00 2.17
2913 2941 7.805071 CACTAAAAACAGCCTCTTACAGAAATG 59.195 37.037 0.00 0.00 0.00 2.32
2914 2942 6.715347 AAAAACAGCCTCTTACAGAAATGT 57.285 33.333 0.00 0.00 0.00 2.71
2915 2943 7.817418 AAAAACAGCCTCTTACAGAAATGTA 57.183 32.000 0.00 0.00 0.00 2.29
2916 2944 7.440523 AAAACAGCCTCTTACAGAAATGTAG 57.559 36.000 0.00 0.00 0.00 2.74
2917 2945 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2918 2946 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2919 2947 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2920 2948 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2921 2949 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2922 2950 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2923 2951 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2924 2952 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2925 2953 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2926 2954 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2927 2955 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2928 2956 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2929 2957 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2930 2958 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2931 2959 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2932 2960 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2933 2961 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2934 2962 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2935 2963 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2936 2964 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2937 2965 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2938 2966 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2939 2967 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2940 2968 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2941 2969 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2942 2970 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2943 2971 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2944 2972 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2945 2973 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2946 2974 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2947 2975 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2948 2976 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2953 2981 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2954 2982 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2955 2983 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2956 2984 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2957 2985 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2958 2986 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2959 2987 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2960 2988 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2961 2989 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2962 2990 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2963 2991 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2964 2992 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2965 2993 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2966 2994 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2967 2995 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2968 2996 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2969 2997 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2970 2998 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2971 2999 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2972 3000 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2997 3025 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2998 3026 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2999 3027 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3000 3028 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3001 3029 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3002 3030 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3003 3031 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3004 3032 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3005 3033 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3006 3034 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3007 3035 1.044611 GCACCAGGTTGCCCTTTTTA 58.955 50.000 0.00 0.00 39.89 1.52
3008 3036 1.623311 GCACCAGGTTGCCCTTTTTAT 59.377 47.619 0.00 0.00 39.89 1.40
3009 3037 2.038426 GCACCAGGTTGCCCTTTTTATT 59.962 45.455 0.00 0.00 39.89 1.40
3010 3038 3.663025 CACCAGGTTGCCCTTTTTATTG 58.337 45.455 0.00 0.00 39.89 1.90
3011 3039 3.323403 CACCAGGTTGCCCTTTTTATTGA 59.677 43.478 0.00 0.00 39.89 2.57
3012 3040 3.323691 ACCAGGTTGCCCTTTTTATTGAC 59.676 43.478 0.00 0.00 39.89 3.18
3013 3041 3.323403 CCAGGTTGCCCTTTTTATTGACA 59.677 43.478 0.00 0.00 39.89 3.58
3014 3042 4.306600 CAGGTTGCCCTTTTTATTGACAC 58.693 43.478 0.00 0.00 39.89 3.67
3015 3043 4.039124 CAGGTTGCCCTTTTTATTGACACT 59.961 41.667 0.00 0.00 39.89 3.55
3016 3044 5.242838 CAGGTTGCCCTTTTTATTGACACTA 59.757 40.000 0.00 0.00 39.89 2.74
3017 3045 5.836358 AGGTTGCCCTTTTTATTGACACTAA 59.164 36.000 0.00 0.00 38.13 2.24
3018 3046 6.325286 AGGTTGCCCTTTTTATTGACACTAAA 59.675 34.615 0.00 0.00 38.13 1.85
3019 3047 6.987404 GGTTGCCCTTTTTATTGACACTAAAA 59.013 34.615 6.63 6.63 0.00 1.52
3020 3048 7.496263 GGTTGCCCTTTTTATTGACACTAAAAA 59.504 33.333 17.51 17.51 36.31 1.94
3021 3049 8.332464 GTTGCCCTTTTTATTGACACTAAAAAC 58.668 33.333 15.59 9.58 34.68 2.43
3022 3050 7.556844 TGCCCTTTTTATTGACACTAAAAACA 58.443 30.769 15.59 11.37 34.68 2.83
3023 3051 7.492994 TGCCCTTTTTATTGACACTAAAAACAC 59.507 33.333 15.59 10.40 34.68 3.32
3024 3052 7.709182 GCCCTTTTTATTGACACTAAAAACACT 59.291 33.333 15.59 0.00 34.68 3.55
3025 3053 9.244799 CCCTTTTTATTGACACTAAAAACACTC 57.755 33.333 15.59 0.00 34.68 3.51
3041 3069 8.446599 AAAAACACTCTTATAATATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
3042 3070 6.989155 AACACTCTTATAATATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
3043 3071 6.591750 ACACTCTTATAATATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3044 3072 5.480772 ACACTCTTATAATATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
3045 3073 5.024118 ACTCTTATAATATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
3046 3074 5.222484 ACTCTTATAATATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
3082 3110 1.273327 GGGCATGGGTTCAACTTTCTG 59.727 52.381 0.00 0.00 0.00 3.02
3116 3144 4.460034 GCCCTTGCTAGTATAGTAGTCTCC 59.540 50.000 14.70 0.92 41.93 3.71
3117 3145 5.749629 GCCCTTGCTAGTATAGTAGTCTCCT 60.750 48.000 14.70 0.00 41.93 3.69
3154 3182 7.701539 ATATAACACTTGACTCATTTTGCCA 57.298 32.000 0.00 0.00 0.00 4.92
3189 3217 8.055790 AGCCCTGAAGTTTTAATAAGCTAATCT 58.944 33.333 0.00 0.00 0.00 2.40
3314 3342 2.698274 TCTTCACAAGCTCACACCACTA 59.302 45.455 0.00 0.00 0.00 2.74
3376 3404 7.765819 TCATTATAATGGATGCCTCAAGTATCG 59.234 37.037 22.31 0.00 38.40 2.92
3433 3462 9.985730 AATATGAAATTCAAAGTTTGCTCTTCA 57.014 25.926 19.42 19.42 0.00 3.02
3599 3636 0.179018 ACTGTTGCCCTTGACAGGTC 60.179 55.000 8.20 0.00 45.78 3.85
3727 3764 7.253905 AGGCCTGTAACTTCTCACTATTTTA 57.746 36.000 3.11 0.00 0.00 1.52
3777 3814 8.463930 AAGACAATCACAGATTTTCTTTACCA 57.536 30.769 12.80 0.00 0.00 3.25
3881 3919 8.415553 TCAATATTTTCAAGTTCCTATGGCATG 58.584 33.333 10.98 0.00 0.00 4.06
4027 4068 9.778741 TTAGTTGAATTCCTATGATGGTGTATC 57.221 33.333 2.27 0.00 36.29 2.24
4038 4079 8.997323 CCTATGATGGTGTATCTCTCAATTTTC 58.003 37.037 0.00 0.00 36.71 2.29
4075 4116 7.696755 TGATGACATATATGCAACTGTTTCAC 58.303 34.615 12.79 3.14 0.00 3.18
4478 4522 1.583477 GCGACTAGGCCGGTATACC 59.417 63.158 12.27 12.27 0.00 2.73
4503 4547 4.385825 TCGTCTGGCTGTAACTGAAAATT 58.614 39.130 0.00 0.00 0.00 1.82
4628 4673 4.873827 TCGAGTAATGGTGTTTGCCTATTC 59.126 41.667 0.00 0.00 0.00 1.75
4660 4706 6.055231 TCATAATTATTCGCCTTTTGTCCG 57.945 37.500 0.00 0.00 0.00 4.79
4819 4869 3.964031 AGGTCACTCTATCATCTGTTCCC 59.036 47.826 0.00 0.00 0.00 3.97
4837 4887 3.115390 TCCCCCTTCTAATCCAGTGAAG 58.885 50.000 0.00 0.00 37.51 3.02
5056 5106 1.133167 TCAGAGAAGGGAGGTCACACA 60.133 52.381 0.00 0.00 0.00 3.72
5092 5142 5.255687 TGCTCAATGGAATGTGACATTAGT 58.744 37.500 11.28 0.00 35.67 2.24
5190 5243 5.045215 CAGTGAAAAGAAATCTTGCTGCAA 58.955 37.500 15.16 15.16 36.12 4.08
5577 5639 3.857665 CGAACACGCAGTAATATGTGACT 59.142 43.478 0.00 0.00 41.61 3.41
5579 5641 5.163992 CGAACACGCAGTAATATGTGACTTT 60.164 40.000 0.00 0.00 41.61 2.66
5580 5642 6.554334 AACACGCAGTAATATGTGACTTTT 57.446 33.333 0.00 0.00 41.61 2.27
5581 5643 6.554334 ACACGCAGTAATATGTGACTTTTT 57.446 33.333 0.00 0.00 41.61 1.94
5583 5645 6.017440 ACACGCAGTAATATGTGACTTTTTGT 60.017 34.615 0.00 0.00 41.61 2.83
5585 5647 8.175069 CACGCAGTAATATGTGACTTTTTGTAT 58.825 33.333 0.00 0.00 41.61 2.29
5586 5648 8.726988 ACGCAGTAATATGTGACTTTTTGTATT 58.273 29.630 0.00 0.00 41.94 1.89
5596 5658 7.990917 TGTGACTTTTTGTATTAGAAAGTGCA 58.009 30.769 5.54 0.00 42.03 4.57
5597 5659 8.629158 TGTGACTTTTTGTATTAGAAAGTGCAT 58.371 29.630 5.54 0.00 42.03 3.96
5598 5660 8.905702 GTGACTTTTTGTATTAGAAAGTGCATG 58.094 33.333 5.54 0.00 42.03 4.06
5599 5661 7.594758 TGACTTTTTGTATTAGAAAGTGCATGC 59.405 33.333 11.82 11.82 42.03 4.06
5600 5662 6.868339 ACTTTTTGTATTAGAAAGTGCATGCC 59.132 34.615 16.68 6.65 40.86 4.40
5601 5663 4.614555 TTGTATTAGAAAGTGCATGCCG 57.385 40.909 16.68 0.00 0.00 5.69
5602 5664 3.867857 TGTATTAGAAAGTGCATGCCGA 58.132 40.909 16.68 0.00 0.00 5.54
5603 5665 3.871006 TGTATTAGAAAGTGCATGCCGAG 59.129 43.478 16.68 0.00 0.00 4.63
5636 5698 2.163818 TGCAAGACCAAGAACCGTAG 57.836 50.000 0.00 0.00 0.00 3.51
5642 5704 3.751518 AGACCAAGAACCGTAGCAAAAT 58.248 40.909 0.00 0.00 0.00 1.82
5652 5714 3.057104 ACCGTAGCAAAATTACAAAGGCC 60.057 43.478 0.00 0.00 0.00 5.19
5712 5774 2.288395 GCCTGCACAGCACTACAAAAAT 60.288 45.455 0.00 0.00 33.79 1.82
5715 5777 2.100418 TGCACAGCACTACAAAAATGCA 59.900 40.909 0.00 0.00 41.97 3.96
5745 5807 1.286880 CAGAAAAGGGTTGGCGCAG 59.713 57.895 10.83 0.00 0.00 5.18
5801 5863 1.687612 CTCCACAGGGCCTTGACAT 59.312 57.895 23.57 0.00 0.00 3.06
5802 5864 0.679002 CTCCACAGGGCCTTGACATG 60.679 60.000 23.57 9.48 0.00 3.21
5844 5906 4.650588 TCCCAAAATTGCTGATTAGGATGG 59.349 41.667 0.00 0.00 0.00 3.51
5925 5989 2.880443 AGGACACATCAATTTGGCACT 58.120 42.857 0.00 0.00 0.00 4.40
5945 6020 8.694540 TGGCACTTGCAGATATTAACATAAATT 58.305 29.630 3.15 0.00 44.36 1.82
5995 6070 9.797473 CGGCGTTGCATATCTTATTATTATATG 57.203 33.333 0.00 0.00 36.89 1.78
6067 6142 3.425577 TTTTCTGTCTTGTTGCAGCTG 57.574 42.857 10.11 10.11 33.09 4.24
6079 6154 3.730761 CAGCTGCGGGTTGAGCAC 61.731 66.667 0.00 0.00 40.01 4.40
6190 6265 5.599999 ACTTGTCAGTTAGTCTCTTGTGT 57.400 39.130 0.00 0.00 0.00 3.72
6193 6268 7.553334 ACTTGTCAGTTAGTCTCTTGTGTTTA 58.447 34.615 0.00 0.00 0.00 2.01
6207 6289 8.372459 TCTCTTGTGTTTAATACCATGTACAGT 58.628 33.333 0.33 0.00 0.00 3.55
6247 6329 8.391305 TGGAATATCCCATTTCTTCCAATTTT 57.609 30.769 0.03 0.00 41.68 1.82
6381 6466 8.671384 TGTTGTCCTTTAGCACAATATATACC 57.329 34.615 0.00 0.00 35.05 2.73
6444 6529 3.242867 TCTGGTCCTTCACTCAGTCATT 58.757 45.455 0.00 0.00 0.00 2.57
6464 6549 5.372363 TCATTATTTGGAATCAGAGCCCCTA 59.628 40.000 0.00 0.00 0.00 3.53
6650 6762 2.038387 AATGGTATTCTGGACGTGCC 57.962 50.000 4.04 0.43 37.10 5.01
6664 6776 1.530771 GTGCCCATCTCAGCCTCAT 59.469 57.895 0.00 0.00 0.00 2.90
6691 6803 4.096231 TCAAATGTGGGTATTTCTGCATCG 59.904 41.667 0.00 0.00 0.00 3.84
6917 7136 5.351233 CAATTTGTTTGCATGCATTCTGT 57.649 34.783 23.37 3.66 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.082425 GGGAATTTAGGCAGGATGATGATT 58.918 41.667 0.00 0.00 39.69 2.57
174 175 2.179427 GGGGATTTCTTTGGTTCAGGG 58.821 52.381 0.00 0.00 0.00 4.45
204 205 3.361977 GGAAAAGCAGCCGCGGAA 61.362 61.111 33.48 0.00 45.49 4.30
296 302 5.220970 CCATACGGACCAAAAATCCATACAC 60.221 44.000 0.00 0.00 35.83 2.90
407 417 3.460857 AGATTGCCTCAGACCGATAAC 57.539 47.619 0.00 0.00 0.00 1.89
409 419 4.100279 TCTAGATTGCCTCAGACCGATA 57.900 45.455 0.00 0.00 0.00 2.92
410 420 2.950781 TCTAGATTGCCTCAGACCGAT 58.049 47.619 0.00 0.00 0.00 4.18
414 424 2.765122 GGCATCTAGATTGCCTCAGAC 58.235 52.381 26.24 6.52 44.72 3.51
423 433 2.224161 GGCGACAGAAGGCATCTAGATT 60.224 50.000 1.33 0.00 36.32 2.40
574 596 3.019564 GGCATTGTCCATTTACAGAGCT 58.980 45.455 0.00 0.00 33.83 4.09
621 644 5.587443 CACATTGCTGAATTGAGTCCTATGA 59.413 40.000 0.00 0.00 0.00 2.15
637 661 0.178981 AAGGCTGTCACCACATTGCT 60.179 50.000 0.00 0.00 0.00 3.91
638 662 0.675633 AAAGGCTGTCACCACATTGC 59.324 50.000 0.00 0.00 0.00 3.56
737 761 4.796946 GCAACAATTGGAGATGAAGCACAA 60.797 41.667 10.83 0.00 0.00 3.33
798 822 7.707624 TTCAAATCCATCAGCAGTAAAGATT 57.292 32.000 0.00 0.00 0.00 2.40
804 828 5.993055 TCTGATTCAAATCCATCAGCAGTA 58.007 37.500 4.56 0.00 44.24 2.74
819 843 4.401022 ACTGCATTGAGGTTTCTGATTCA 58.599 39.130 0.00 0.00 0.00 2.57
850 874 1.542030 ACTAACTCTGACTCTGCACGG 59.458 52.381 0.00 0.00 0.00 4.94
1081 1108 7.136822 TGCCCAAATCACTATTATCACTACT 57.863 36.000 0.00 0.00 0.00 2.57
1142 1169 2.909006 AGATCGCTGATGGATGGGTATT 59.091 45.455 0.00 0.00 0.00 1.89
1197 1224 5.301835 TGGCTCCAAAATTTCCATCAAAA 57.698 34.783 0.00 0.00 0.00 2.44
1268 1295 6.687393 GCATGATCTAGAAGTTGGATTCCTCA 60.687 42.308 3.95 0.00 0.00 3.86
1280 1307 4.754114 GCAACTTAGGGCATGATCTAGAAG 59.246 45.833 0.00 0.00 0.00 2.85
1332 1359 6.994421 AAACCTGATTCAAACCCAATAACT 57.006 33.333 0.00 0.00 0.00 2.24
1402 1429 7.484007 GCAAGTGTTGATGACTAAAGATGAATG 59.516 37.037 0.00 0.00 0.00 2.67
1546 1573 3.250744 CTTGGTCAGAATGCTGCATTTG 58.749 45.455 26.87 23.44 42.01 2.32
1576 1603 3.890756 TCTTGAAATCCAGAGCTGCAAAA 59.109 39.130 1.02 0.00 0.00 2.44
1629 1656 3.318017 CCAAGTAGGTGACTCAAACGAG 58.682 50.000 0.00 0.00 43.67 4.18
1638 1665 1.377333 GGCTGGCCAAGTAGGTGAC 60.377 63.158 7.01 0.00 40.61 3.67
1732 1759 1.204146 TATGACTCCCTGCCCTCAAC 58.796 55.000 0.00 0.00 0.00 3.18
1763 1790 0.902531 CCTTTCGGCCTCTAGGTGAA 59.097 55.000 0.00 0.29 37.57 3.18
1806 1833 2.320681 TTGGTAGTGGGACAGCTACT 57.679 50.000 0.00 0.00 41.80 2.57
1833 1860 2.735772 GCTGAGCGGAGGGGAATGA 61.736 63.158 0.00 0.00 0.00 2.57
1845 1872 1.220477 GAGAGGGGACAAGCTGAGC 59.780 63.158 0.00 0.00 0.00 4.26
1956 1983 9.665264 GAAACATTTTCACCTATCGATATTTCC 57.335 33.333 5.40 0.00 0.00 3.13
1979 2006 5.427378 TGATTCTATCGCCATGTTCAGAAA 58.573 37.500 0.00 0.00 0.00 2.52
2017 2044 6.942576 ACATGCAAGATAGTAGTTTTTCCTGT 59.057 34.615 0.00 0.00 0.00 4.00
2053 2080 3.033659 ACACCTCTTAGGGATCATCGT 57.966 47.619 0.00 0.00 40.58 3.73
2060 2087 5.467668 TCTATCTGAACACCTCTTAGGGA 57.532 43.478 0.00 0.00 40.58 4.20
2112 2139 0.819259 CAATGCGTGGGGATACAGGG 60.819 60.000 0.00 0.00 39.74 4.45
2139 2166 1.460504 GAAAGAGGCTTAAACCCCGG 58.539 55.000 0.00 0.00 0.00 5.73
2271 2298 1.597663 AGCGTCCAACTGAAAAACTCG 59.402 47.619 0.00 0.00 0.00 4.18
2355 2383 1.002430 GCCAGTCACATTCAGGACAGA 59.998 52.381 0.00 0.00 36.50 3.41
2372 2400 2.347490 GGAGAGAAGTTGCCGCCA 59.653 61.111 0.00 0.00 0.00 5.69
2453 2481 1.857217 CCAGCAAGATCAATCGACGAG 59.143 52.381 3.01 0.00 0.00 4.18
2609 2637 7.994425 TCATCAGAAACAAGCCTGTATTTAA 57.006 32.000 0.00 0.00 33.45 1.52
2617 2645 4.021719 CACCAATTCATCAGAAACAAGCCT 60.022 41.667 0.00 0.00 37.29 4.58
2620 2648 4.873817 TGCACCAATTCATCAGAAACAAG 58.126 39.130 0.00 0.00 37.29 3.16
2653 2681 3.190849 CATGACGCTCCGCCACTG 61.191 66.667 0.00 0.00 0.00 3.66
2654 2682 4.457496 CCATGACGCTCCGCCACT 62.457 66.667 0.00 0.00 0.00 4.00
2665 2693 0.751643 CCCGGAATTGTCCCCATGAC 60.752 60.000 0.73 0.00 41.44 3.06
2666 2694 1.612513 CCCGGAATTGTCCCCATGA 59.387 57.895 0.73 0.00 41.44 3.07
2667 2695 2.127232 GCCCGGAATTGTCCCCATG 61.127 63.158 0.73 0.00 41.44 3.66
2668 2696 2.278738 GCCCGGAATTGTCCCCAT 59.721 61.111 0.73 0.00 41.44 4.00
2669 2697 4.055227 GGCCCGGAATTGTCCCCA 62.055 66.667 0.73 0.00 41.44 4.96
2670 2698 3.296842 AAGGCCCGGAATTGTCCCC 62.297 63.158 0.73 0.00 41.44 4.81
2671 2699 2.052104 CAAGGCCCGGAATTGTCCC 61.052 63.158 0.73 0.00 41.44 4.46
2672 2700 2.052104 CCAAGGCCCGGAATTGTCC 61.052 63.158 0.73 0.00 41.01 4.02
2673 2701 2.710902 GCCAAGGCCCGGAATTGTC 61.711 63.158 13.08 0.00 34.56 3.18
2674 2702 2.679996 GCCAAGGCCCGGAATTGT 60.680 61.111 13.08 0.00 34.56 2.71
2696 2724 7.743281 TATTTGGCAAATTTTCCTCTTGGAAGG 60.743 37.037 28.56 0.00 41.26 3.46
2697 2725 7.118245 GTATTTGGCAAATTTTCCTCTTGGAAG 59.882 37.037 28.56 0.00 41.26 3.46
2698 2726 6.934083 GTATTTGGCAAATTTTCCTCTTGGAA 59.066 34.615 28.56 5.05 40.00 3.53
2699 2727 5.565455 ATTTGGCAAATTTTCCTCTTGGA 57.435 34.783 19.39 0.00 41.36 3.53
2700 2728 6.466812 AGTATTTGGCAAATTTTCCTCTTGG 58.533 36.000 28.56 0.00 32.38 3.61
2701 2729 7.381323 AGAGTATTTGGCAAATTTTCCTCTTG 58.619 34.615 28.56 0.00 32.38 3.02
2702 2730 7.544804 AGAGTATTTGGCAAATTTTCCTCTT 57.455 32.000 28.56 14.85 32.38 2.85
2703 2731 7.544804 AAGAGTATTTGGCAAATTTTCCTCT 57.455 32.000 28.56 25.47 32.38 3.69
2704 2732 9.521503 GATAAGAGTATTTGGCAAATTTTCCTC 57.478 33.333 28.56 24.09 32.38 3.71
2705 2733 9.259832 AGATAAGAGTATTTGGCAAATTTTCCT 57.740 29.630 28.56 18.69 32.38 3.36
2711 2739 9.007901 GCAGATAGATAAGAGTATTTGGCAAAT 57.992 33.333 26.86 26.86 34.90 2.32
2712 2740 8.213679 AGCAGATAGATAAGAGTATTTGGCAAA 58.786 33.333 16.01 16.01 0.00 3.68
2713 2741 7.739825 AGCAGATAGATAAGAGTATTTGGCAA 58.260 34.615 0.00 0.00 0.00 4.52
2714 2742 7.308450 AGCAGATAGATAAGAGTATTTGGCA 57.692 36.000 0.00 0.00 0.00 4.92
2715 2743 9.883142 ATTAGCAGATAGATAAGAGTATTTGGC 57.117 33.333 0.00 0.00 30.59 4.52
2736 2764 6.162777 CCAGAGGATTAGTAGAGCAATTAGC 58.837 44.000 0.00 0.00 46.19 3.09
2737 2765 6.162777 GCCAGAGGATTAGTAGAGCAATTAG 58.837 44.000 0.00 0.00 0.00 1.73
2738 2766 5.279006 CGCCAGAGGATTAGTAGAGCAATTA 60.279 44.000 0.00 0.00 0.00 1.40
2739 2767 4.502259 CGCCAGAGGATTAGTAGAGCAATT 60.502 45.833 0.00 0.00 0.00 2.32
2740 2768 3.006323 CGCCAGAGGATTAGTAGAGCAAT 59.994 47.826 0.00 0.00 0.00 3.56
2741 2769 2.362397 CGCCAGAGGATTAGTAGAGCAA 59.638 50.000 0.00 0.00 0.00 3.91
2742 2770 1.957177 CGCCAGAGGATTAGTAGAGCA 59.043 52.381 0.00 0.00 0.00 4.26
2743 2771 1.957877 ACGCCAGAGGATTAGTAGAGC 59.042 52.381 0.00 0.00 0.00 4.09
2744 2772 3.482436 AGACGCCAGAGGATTAGTAGAG 58.518 50.000 0.00 0.00 0.00 2.43
2745 2773 3.136809 AGAGACGCCAGAGGATTAGTAGA 59.863 47.826 0.00 0.00 0.00 2.59
2746 2774 3.252215 CAGAGACGCCAGAGGATTAGTAG 59.748 52.174 0.00 0.00 0.00 2.57
2747 2775 3.118000 TCAGAGACGCCAGAGGATTAGTA 60.118 47.826 0.00 0.00 0.00 1.82
2748 2776 2.028130 CAGAGACGCCAGAGGATTAGT 58.972 52.381 0.00 0.00 0.00 2.24
2749 2777 2.302260 TCAGAGACGCCAGAGGATTAG 58.698 52.381 0.00 0.00 0.00 1.73
2750 2778 2.437085 TCAGAGACGCCAGAGGATTA 57.563 50.000 0.00 0.00 0.00 1.75
2751 2779 1.686052 GATCAGAGACGCCAGAGGATT 59.314 52.381 0.00 0.00 0.00 3.01
2752 2780 1.327303 GATCAGAGACGCCAGAGGAT 58.673 55.000 0.00 0.00 0.00 3.24
2753 2781 0.034089 TGATCAGAGACGCCAGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
2754 2782 0.102120 GTGATCAGAGACGCCAGAGG 59.898 60.000 0.00 0.00 0.00 3.69
2755 2783 0.102120 GGTGATCAGAGACGCCAGAG 59.898 60.000 0.00 0.00 36.77 3.35
2756 2784 1.657751 CGGTGATCAGAGACGCCAGA 61.658 60.000 0.00 0.00 36.60 3.86
2757 2785 1.226802 CGGTGATCAGAGACGCCAG 60.227 63.158 0.00 0.00 36.60 4.85
2758 2786 0.678684 TACGGTGATCAGAGACGCCA 60.679 55.000 0.00 0.00 36.60 5.69
2759 2787 0.029567 CTACGGTGATCAGAGACGCC 59.970 60.000 0.00 0.00 0.00 5.68
2760 2788 0.592754 GCTACGGTGATCAGAGACGC 60.593 60.000 0.00 0.00 0.00 5.19
2761 2789 0.029567 GGCTACGGTGATCAGAGACG 59.970 60.000 0.00 1.33 0.00 4.18
2762 2790 1.394618 AGGCTACGGTGATCAGAGAC 58.605 55.000 0.00 0.00 0.00 3.36
2763 2791 2.145397 AAGGCTACGGTGATCAGAGA 57.855 50.000 0.00 0.00 0.00 3.10
2764 2792 2.969628 AAAGGCTACGGTGATCAGAG 57.030 50.000 0.00 0.00 0.00 3.35
2765 2793 2.832129 AGAAAAGGCTACGGTGATCAGA 59.168 45.455 0.00 0.00 0.00 3.27
2766 2794 3.252974 AGAAAAGGCTACGGTGATCAG 57.747 47.619 0.00 0.00 0.00 2.90
2767 2795 4.161565 ACATAGAAAAGGCTACGGTGATCA 59.838 41.667 0.00 0.00 0.00 2.92
2768 2796 4.694339 ACATAGAAAAGGCTACGGTGATC 58.306 43.478 0.00 0.00 0.00 2.92
2769 2797 4.161565 TGACATAGAAAAGGCTACGGTGAT 59.838 41.667 0.00 0.00 0.00 3.06
2770 2798 3.512329 TGACATAGAAAAGGCTACGGTGA 59.488 43.478 0.00 0.00 0.00 4.02
2771 2799 3.857052 TGACATAGAAAAGGCTACGGTG 58.143 45.455 0.00 0.00 0.00 4.94
2772 2800 4.755266 ATGACATAGAAAAGGCTACGGT 57.245 40.909 0.00 0.00 0.00 4.83
2773 2801 7.328737 GTGTATATGACATAGAAAAGGCTACGG 59.671 40.741 0.98 0.00 41.14 4.02
2774 2802 8.082852 AGTGTATATGACATAGAAAAGGCTACG 58.917 37.037 0.98 0.00 41.14 3.51
2775 2803 9.413048 GAGTGTATATGACATAGAAAAGGCTAC 57.587 37.037 0.98 0.00 41.14 3.58
2776 2804 9.143155 TGAGTGTATATGACATAGAAAAGGCTA 57.857 33.333 0.98 0.00 41.14 3.93
2777 2805 8.023021 TGAGTGTATATGACATAGAAAAGGCT 57.977 34.615 0.98 0.00 41.14 4.58
2778 2806 7.928706 ACTGAGTGTATATGACATAGAAAAGGC 59.071 37.037 0.98 0.00 41.14 4.35
2779 2807 9.823647 AACTGAGTGTATATGACATAGAAAAGG 57.176 33.333 0.98 0.00 41.14 3.11
2781 2809 9.599866 CCAACTGAGTGTATATGACATAGAAAA 57.400 33.333 0.98 0.00 41.14 2.29
2782 2810 7.710907 GCCAACTGAGTGTATATGACATAGAAA 59.289 37.037 0.98 0.00 41.14 2.52
2783 2811 7.210174 GCCAACTGAGTGTATATGACATAGAA 58.790 38.462 0.98 0.00 41.14 2.10
2784 2812 6.239317 GGCCAACTGAGTGTATATGACATAGA 60.239 42.308 0.00 0.00 41.14 1.98
2785 2813 5.928839 GGCCAACTGAGTGTATATGACATAG 59.071 44.000 0.00 0.00 41.14 2.23
2786 2814 5.221641 GGGCCAACTGAGTGTATATGACATA 60.222 44.000 4.39 0.00 41.14 2.29
2787 2815 4.444876 GGGCCAACTGAGTGTATATGACAT 60.445 45.833 4.39 0.00 41.14 3.06
2788 2816 3.118408 GGGCCAACTGAGTGTATATGACA 60.118 47.826 4.39 0.00 34.94 3.58
2789 2817 3.467803 GGGCCAACTGAGTGTATATGAC 58.532 50.000 4.39 0.00 0.00 3.06
2790 2818 2.438021 GGGGCCAACTGAGTGTATATGA 59.562 50.000 4.39 0.00 0.00 2.15
2791 2819 2.487265 GGGGGCCAACTGAGTGTATATG 60.487 54.545 4.39 0.00 0.00 1.78
2792 2820 1.774856 GGGGGCCAACTGAGTGTATAT 59.225 52.381 4.39 0.00 0.00 0.86
2793 2821 1.209621 GGGGGCCAACTGAGTGTATA 58.790 55.000 4.39 0.00 0.00 1.47
2794 2822 0.550147 AGGGGGCCAACTGAGTGTAT 60.550 55.000 4.39 0.00 0.00 2.29
2795 2823 1.151899 AGGGGGCCAACTGAGTGTA 60.152 57.895 4.39 0.00 0.00 2.90
2796 2824 2.450502 AGGGGGCCAACTGAGTGT 60.451 61.111 4.39 0.00 0.00 3.55
2797 2825 0.909610 TAGAGGGGGCCAACTGAGTG 60.910 60.000 4.39 0.00 0.00 3.51
2798 2826 0.178873 TTAGAGGGGGCCAACTGAGT 60.179 55.000 4.39 0.00 0.00 3.41
2799 2827 1.216990 ATTAGAGGGGGCCAACTGAG 58.783 55.000 4.39 0.00 0.00 3.35
2800 2828 2.579624 TATTAGAGGGGGCCAACTGA 57.420 50.000 4.39 0.00 0.00 3.41
2801 2829 2.982488 AGATATTAGAGGGGGCCAACTG 59.018 50.000 4.39 0.00 0.00 3.16
2802 2830 2.982488 CAGATATTAGAGGGGGCCAACT 59.018 50.000 4.39 1.90 0.00 3.16
2803 2831 2.979678 TCAGATATTAGAGGGGGCCAAC 59.020 50.000 4.39 0.00 0.00 3.77
2804 2832 3.360740 TCAGATATTAGAGGGGGCCAA 57.639 47.619 4.39 0.00 0.00 4.52
2805 2833 3.585077 ATCAGATATTAGAGGGGGCCA 57.415 47.619 4.39 0.00 0.00 5.36
2806 2834 3.846588 TGAATCAGATATTAGAGGGGGCC 59.153 47.826 0.00 0.00 0.00 5.80
2807 2835 4.621747 CGTGAATCAGATATTAGAGGGGGC 60.622 50.000 0.00 0.00 0.00 5.80
2808 2836 4.621747 GCGTGAATCAGATATTAGAGGGGG 60.622 50.000 0.00 0.00 0.00 5.40
2809 2837 4.221703 AGCGTGAATCAGATATTAGAGGGG 59.778 45.833 0.00 0.00 0.00 4.79
2810 2838 5.398603 AGCGTGAATCAGATATTAGAGGG 57.601 43.478 0.00 0.00 0.00 4.30
2811 2839 5.406649 GGAGCGTGAATCAGATATTAGAGG 58.593 45.833 0.00 0.00 0.00 3.69
2812 2840 5.092105 CGGAGCGTGAATCAGATATTAGAG 58.908 45.833 0.00 0.00 0.00 2.43
2813 2841 5.048153 CGGAGCGTGAATCAGATATTAGA 57.952 43.478 0.00 0.00 0.00 2.10
2829 2857 5.094357 ACTACATAGTAAGTGGCGGAGCG 62.094 52.174 0.00 0.00 45.95 5.03
2830 2858 2.361438 ACTACATAGTAAGTGGCGGAGC 59.639 50.000 0.00 0.00 44.75 4.70
2831 2859 4.820716 AGTACTACATAGTAAGTGGCGGAG 59.179 45.833 0.00 0.00 40.20 4.63
2832 2860 4.785301 AGTACTACATAGTAAGTGGCGGA 58.215 43.478 0.00 0.00 40.20 5.54
2833 2861 4.023365 GGAGTACTACATAGTAAGTGGCGG 60.023 50.000 0.00 0.00 40.20 6.13
2834 2862 4.023365 GGGAGTACTACATAGTAAGTGGCG 60.023 50.000 7.57 0.00 40.20 5.69
2835 2863 5.139001 AGGGAGTACTACATAGTAAGTGGC 58.861 45.833 7.57 0.00 40.20 5.01
2836 2864 5.769162 GGAGGGAGTACTACATAGTAAGTGG 59.231 48.000 7.57 0.00 40.20 4.00
2837 2865 5.469421 CGGAGGGAGTACTACATAGTAAGTG 59.531 48.000 7.57 0.00 40.20 3.16
2838 2866 5.131809 ACGGAGGGAGTACTACATAGTAAGT 59.868 44.000 7.57 0.00 40.20 2.24
2839 2867 5.619220 ACGGAGGGAGTACTACATAGTAAG 58.381 45.833 7.57 0.00 40.20 2.34
2840 2868 5.455326 GGACGGAGGGAGTACTACATAGTAA 60.455 48.000 7.57 0.00 40.20 2.24
2841 2869 4.040952 GGACGGAGGGAGTACTACATAGTA 59.959 50.000 7.57 0.00 37.73 1.82
2842 2870 3.181446 GGACGGAGGGAGTACTACATAGT 60.181 52.174 7.57 3.66 40.24 2.12
2843 2871 3.410508 GGACGGAGGGAGTACTACATAG 58.589 54.545 7.57 0.10 0.00 2.23
2844 2872 2.107204 GGGACGGAGGGAGTACTACATA 59.893 54.545 7.57 0.00 0.00 2.29
2845 2873 1.133544 GGGACGGAGGGAGTACTACAT 60.134 57.143 7.57 0.00 0.00 2.29
2846 2874 0.257039 GGGACGGAGGGAGTACTACA 59.743 60.000 7.57 0.00 0.00 2.74
2847 2875 0.257039 TGGGACGGAGGGAGTACTAC 59.743 60.000 0.00 0.00 0.00 2.73
2848 2876 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
2849 2877 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2850 2878 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2851 2879 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2852 2880 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2853 2881 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2854 2882 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2855 2883 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2856 2884 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2857 2885 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2858 2886 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2859 2887 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2860 2888 7.758076 TCAATAACGCTCTTATATTATGGGACG 59.242 37.037 0.00 0.00 0.00 4.79
2861 2889 8.870879 GTCAATAACGCTCTTATATTATGGGAC 58.129 37.037 0.00 0.00 0.00 4.46
2862 2890 8.590204 TGTCAATAACGCTCTTATATTATGGGA 58.410 33.333 0.00 0.00 0.00 4.37
2863 2891 8.656849 GTGTCAATAACGCTCTTATATTATGGG 58.343 37.037 0.00 0.00 35.42 4.00
2864 2892 9.424319 AGTGTCAATAACGCTCTTATATTATGG 57.576 33.333 0.00 0.00 45.69 2.74
2871 2899 8.995220 TGTTTTTAGTGTCAATAACGCTCTTAT 58.005 29.630 0.00 0.00 45.69 1.73
2872 2900 8.367943 TGTTTTTAGTGTCAATAACGCTCTTA 57.632 30.769 0.00 0.00 45.69 2.10
2873 2901 7.254227 TGTTTTTAGTGTCAATAACGCTCTT 57.746 32.000 0.00 0.00 45.69 2.85
2874 2902 6.565999 GCTGTTTTTAGTGTCAATAACGCTCT 60.566 38.462 0.00 0.00 45.69 4.09
2875 2903 5.564127 GCTGTTTTTAGTGTCAATAACGCTC 59.436 40.000 0.00 0.00 45.69 5.03
2877 2905 4.615541 GGCTGTTTTTAGTGTCAATAACGC 59.384 41.667 0.00 0.00 38.74 4.84
2878 2906 5.997385 AGGCTGTTTTTAGTGTCAATAACG 58.003 37.500 0.00 0.00 0.00 3.18
2879 2907 7.203255 AGAGGCTGTTTTTAGTGTCAATAAC 57.797 36.000 0.00 0.00 0.00 1.89
2880 2908 7.817418 AAGAGGCTGTTTTTAGTGTCAATAA 57.183 32.000 0.00 0.00 0.00 1.40
2881 2909 7.934665 TGTAAGAGGCTGTTTTTAGTGTCAATA 59.065 33.333 0.90 0.00 0.00 1.90
2882 2910 6.770785 TGTAAGAGGCTGTTTTTAGTGTCAAT 59.229 34.615 0.90 0.00 0.00 2.57
2883 2911 6.116806 TGTAAGAGGCTGTTTTTAGTGTCAA 58.883 36.000 0.90 0.00 0.00 3.18
2884 2912 5.676552 TGTAAGAGGCTGTTTTTAGTGTCA 58.323 37.500 0.90 0.00 0.00 3.58
2885 2913 5.989777 TCTGTAAGAGGCTGTTTTTAGTGTC 59.010 40.000 0.90 0.00 38.67 3.67
2886 2914 5.925509 TCTGTAAGAGGCTGTTTTTAGTGT 58.074 37.500 0.90 0.00 38.67 3.55
2901 2929 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2902 2930 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2903 2931 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2904 2932 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2905 2933 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2906 2934 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2907 2935 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2908 2936 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2909 2937 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2910 2938 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2911 2939 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2912 2940 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2913 2941 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2914 2942 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2915 2943 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2916 2944 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2917 2945 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2918 2946 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2919 2947 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2920 2948 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2921 2949 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2922 2950 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2923 2951 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2924 2952 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2925 2953 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2926 2954 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2927 2955 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2937 2965 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2938 2966 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2939 2967 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2940 2968 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2941 2969 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2942 2970 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2943 2971 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2944 2972 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2945 2973 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2946 2974 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2947 2975 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2948 2976 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2949 2977 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2950 2978 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2951 2979 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2952 2980 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2953 2981 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2954 2982 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2955 2983 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2967 2995 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2970 2998 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2971 2999 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2972 3000 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2973 3001 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2979 3007 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2980 3008 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2981 3009 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2982 3010 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2983 3011 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2994 3022 6.987404 TTTTAGTGTCAATAAAAAGGGCAACC 59.013 34.615 14.15 0.00 40.89 3.77
2995 3023 8.332464 GTTTTTAGTGTCAATAAAAAGGGCAAC 58.668 33.333 23.99 12.91 40.75 4.17
2996 3024 8.041323 TGTTTTTAGTGTCAATAAAAAGGGCAA 58.959 29.630 23.99 10.36 40.75 4.52
2997 3025 7.492994 GTGTTTTTAGTGTCAATAAAAAGGGCA 59.507 33.333 23.99 17.76 40.75 5.36
2998 3026 7.709182 AGTGTTTTTAGTGTCAATAAAAAGGGC 59.291 33.333 23.99 17.91 40.75 5.19
2999 3027 9.244799 GAGTGTTTTTAGTGTCAATAAAAAGGG 57.755 33.333 23.99 0.00 40.75 3.95
3015 3043 9.550406 CCGTCCCATATTATAAGAGTGTTTTTA 57.450 33.333 0.00 0.00 0.00 1.52
3016 3044 8.269317 TCCGTCCCATATTATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
3017 3045 7.798071 TCCGTCCCATATTATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
3018 3046 7.369551 TCCGTCCCATATTATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
3019 3047 6.014499 CCTCCGTCCCATATTATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
3020 3048 5.480772 CCTCCGTCCCATATTATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
3021 3049 5.105310 CCCTCCGTCCCATATTATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
3022 3050 5.024118 CCCTCCGTCCCATATTATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
3023 3051 5.269991 TCCCTCCGTCCCATATTATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3024 3052 5.222484 ACTCCCTCCGTCCCATATTATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3025 3053 5.024118 ACTCCCTCCGTCCCATATTATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3026 3054 5.019657 ACTCCCTCCGTCCCATATTATAA 57.980 43.478 0.00 0.00 0.00 0.98
3027 3055 4.687262 ACTCCCTCCGTCCCATATTATA 57.313 45.455 0.00 0.00 0.00 0.98
3028 3056 3.562108 ACTCCCTCCGTCCCATATTAT 57.438 47.619 0.00 0.00 0.00 1.28
3029 3057 4.687262 ATACTCCCTCCGTCCCATATTA 57.313 45.455 0.00 0.00 0.00 0.98
3030 3058 3.562108 ATACTCCCTCCGTCCCATATT 57.438 47.619 0.00 0.00 0.00 1.28
3031 3059 4.016479 ACATATACTCCCTCCGTCCCATAT 60.016 45.833 0.00 0.00 0.00 1.78
3032 3060 3.335786 ACATATACTCCCTCCGTCCCATA 59.664 47.826 0.00 0.00 0.00 2.74
3033 3061 2.111972 ACATATACTCCCTCCGTCCCAT 59.888 50.000 0.00 0.00 0.00 4.00
3034 3062 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
3035 3063 2.305858 ACATATACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
3036 3064 3.802675 GCAAACATATACTCCCTCCGTCC 60.803 52.174 0.00 0.00 0.00 4.79
3037 3065 3.181469 TGCAAACATATACTCCCTCCGTC 60.181 47.826 0.00 0.00 0.00 4.79
3038 3066 2.769663 TGCAAACATATACTCCCTCCGT 59.230 45.455 0.00 0.00 0.00 4.69
3039 3067 3.131396 GTGCAAACATATACTCCCTCCG 58.869 50.000 0.00 0.00 0.00 4.63
3040 3068 4.130118 CAGTGCAAACATATACTCCCTCC 58.870 47.826 0.00 0.00 0.00 4.30
3041 3069 4.130118 CCAGTGCAAACATATACTCCCTC 58.870 47.826 0.00 0.00 0.00 4.30
3042 3070 3.117888 CCCAGTGCAAACATATACTCCCT 60.118 47.826 0.00 0.00 0.00 4.20
3043 3071 3.214328 CCCAGTGCAAACATATACTCCC 58.786 50.000 0.00 0.00 0.00 4.30
3044 3072 2.618709 GCCCAGTGCAAACATATACTCC 59.381 50.000 0.00 0.00 40.77 3.85
3045 3073 3.971032 GCCCAGTGCAAACATATACTC 57.029 47.619 0.00 0.00 40.77 2.59
3069 3097 2.029918 GCATCCCACAGAAAGTTGAACC 60.030 50.000 0.00 0.00 0.00 3.62
3116 3144 7.121168 TCAAGTGTTATATTGGGAAAAGAGCAG 59.879 37.037 0.00 0.00 0.00 4.24
3117 3145 6.945435 TCAAGTGTTATATTGGGAAAAGAGCA 59.055 34.615 0.00 0.00 0.00 4.26
3215 3243 2.275418 CACCCATGCCCCACCTAC 59.725 66.667 0.00 0.00 0.00 3.18
3344 3372 8.709272 TGAGGCATCCATTATAATGAATTGAA 57.291 30.769 24.17 5.38 38.70 2.69
3376 3404 6.848451 TCGAAATGGCAGAAAATAGTAAACC 58.152 36.000 0.00 0.00 0.00 3.27
3433 3462 3.414269 TCAGATGTTGACATGCACACAT 58.586 40.909 0.57 4.37 36.57 3.21
3448 3477 2.286294 GCCTCACAATTAGCGTCAGATG 59.714 50.000 0.00 0.00 0.00 2.90
3599 3636 2.557056 TGTCTTCTCTGGGTTACTGACG 59.443 50.000 0.00 0.00 0.00 4.35
3793 3831 5.883673 GCTGGTAACCCATATGTAAACAAGA 59.116 40.000 1.24 0.00 40.90 3.02
3794 3832 5.650266 TGCTGGTAACCCATATGTAAACAAG 59.350 40.000 1.24 0.00 40.90 3.16
3796 3834 5.180810 TGCTGGTAACCCATATGTAAACA 57.819 39.130 1.24 0.00 40.90 2.83
3797 3835 7.811117 TTATGCTGGTAACCCATATGTAAAC 57.189 36.000 1.24 0.00 40.90 2.01
3824 3862 7.161404 TCAACAGAGCAAGTCTACACAATAAT 58.839 34.615 0.00 0.00 32.51 1.28
3866 3904 3.719268 TGACACATGCCATAGGAACTT 57.281 42.857 0.00 0.00 41.75 2.66
3881 3919 5.448632 CCCAGTAACTCAACAAAGTTGACAC 60.449 44.000 8.39 7.25 39.74 3.67
4009 4050 7.862274 TTGAGAGATACACCATCATAGGAAT 57.138 36.000 0.00 0.00 35.96 3.01
4050 4091 7.336427 TGTGAAACAGTTGCATATATGTCATCA 59.664 33.333 14.14 8.86 45.67 3.07
4321 4362 8.652810 AAATAGAAGTTTATGAATGGCATTGC 57.347 30.769 19.07 9.81 38.44 3.56
4471 4515 1.068472 CAGCCAGACGATCGGTATACC 60.068 57.143 20.98 12.27 0.00 2.73
4478 4522 1.132453 TCAGTTACAGCCAGACGATCG 59.868 52.381 14.88 14.88 0.00 3.69
4503 4547 6.015918 ACTGGACATCCAATGAAATGGTAAA 58.984 36.000 1.50 0.00 46.97 2.01
4523 4567 8.131100 CAGTATATTGCAGGTCAAATTTACTGG 58.869 37.037 12.76 0.00 39.14 4.00
4628 4673 4.154918 GGCGAATAATTATGAGCCCTTCTG 59.845 45.833 23.66 6.66 38.72 3.02
4660 4706 2.031682 AGCACGTCTTGATGCAAGTTTC 60.032 45.455 7.02 0.00 44.59 2.78
4837 4887 1.078143 ACTGGCATCGCTTCCTTCC 60.078 57.895 0.00 0.00 0.00 3.46
5056 5106 4.341806 TCCATTGAGCAACATGTTCTGTTT 59.658 37.500 8.48 0.00 45.98 2.83
5092 5142 7.324935 CAATGGGACTCAATTCATTTGATTCA 58.675 34.615 7.64 0.00 42.72 2.57
5179 5232 1.999648 TGGAAGGTTTGCAGCAAGAT 58.000 45.000 8.12 0.00 0.00 2.40
5190 5243 7.004086 TGAACTATCATTCACTTTGGAAGGTT 58.996 34.615 0.00 0.00 33.62 3.50
5344 5406 4.898861 AGATAAAATCGCCTCTCTTCCTCT 59.101 41.667 0.00 0.00 0.00 3.69
5577 5639 5.861251 CGGCATGCACTTTCTAATACAAAAA 59.139 36.000 21.36 0.00 0.00 1.94
5579 5641 4.697828 TCGGCATGCACTTTCTAATACAAA 59.302 37.500 21.36 0.00 0.00 2.83
5580 5642 4.257731 TCGGCATGCACTTTCTAATACAA 58.742 39.130 21.36 0.00 0.00 2.41
5581 5643 3.867857 TCGGCATGCACTTTCTAATACA 58.132 40.909 21.36 0.00 0.00 2.29
5583 5645 4.400529 TCTCGGCATGCACTTTCTAATA 57.599 40.909 21.36 0.00 0.00 0.98
5585 5647 2.760634 TCTCGGCATGCACTTTCTAA 57.239 45.000 21.36 0.00 0.00 2.10
5586 5648 2.621338 CTTCTCGGCATGCACTTTCTA 58.379 47.619 21.36 0.00 0.00 2.10
5588 5650 0.449388 CCTTCTCGGCATGCACTTTC 59.551 55.000 21.36 0.00 0.00 2.62
5589 5651 2.559785 CCTTCTCGGCATGCACTTT 58.440 52.632 21.36 0.00 0.00 2.66
5590 5652 4.308526 CCTTCTCGGCATGCACTT 57.691 55.556 21.36 0.00 0.00 3.16
5599 5661 1.602920 GCAAGTTTTTGGCCTTCTCGG 60.603 52.381 3.32 0.00 34.79 4.63
5600 5662 1.066908 TGCAAGTTTTTGGCCTTCTCG 59.933 47.619 3.32 0.00 34.79 4.04
5601 5663 2.888834 TGCAAGTTTTTGGCCTTCTC 57.111 45.000 3.32 0.00 34.79 2.87
5602 5664 2.765699 TCTTGCAAGTTTTTGGCCTTCT 59.234 40.909 25.19 0.00 34.79 2.85
5603 5665 2.866156 GTCTTGCAAGTTTTTGGCCTTC 59.134 45.455 25.19 0.97 34.79 3.46
5636 5698 5.270083 GTTTGTTGGCCTTTGTAATTTTGC 58.730 37.500 3.32 0.00 0.00 3.68
5642 5704 2.376109 TCGGTTTGTTGGCCTTTGTAA 58.624 42.857 3.32 0.00 0.00 2.41
5652 5714 5.786401 TTCCAATTTTGTTCGGTTTGTTG 57.214 34.783 0.00 0.00 0.00 3.33
5745 5807 0.940833 GATTCTCCGCTAGCTTTGCC 59.059 55.000 13.93 0.00 0.00 4.52
5801 5863 8.561536 TTGGGAAATCTAGAATACTATCCACA 57.438 34.615 0.00 0.00 30.10 4.17
5802 5864 9.847224 TTTTGGGAAATCTAGAATACTATCCAC 57.153 33.333 0.00 0.00 30.10 4.02
5844 5906 7.809806 AGCAACAGCAAAATCTCAGTATTTTAC 59.190 33.333 0.00 0.00 37.03 2.01
5908 5972 2.102757 TGCAAGTGCCAAATTGATGTGT 59.897 40.909 0.00 0.00 41.18 3.72
5945 6020 7.601130 CCGCACTTTTAATAGCACCATATACTA 59.399 37.037 0.00 0.00 0.00 1.82
5946 6021 6.426937 CCGCACTTTTAATAGCACCATATACT 59.573 38.462 0.00 0.00 0.00 2.12
5947 6022 6.599437 CCGCACTTTTAATAGCACCATATAC 58.401 40.000 0.00 0.00 0.00 1.47
5948 6023 5.180492 GCCGCACTTTTAATAGCACCATATA 59.820 40.000 0.00 0.00 0.00 0.86
5949 6024 4.023193 GCCGCACTTTTAATAGCACCATAT 60.023 41.667 0.00 0.00 0.00 1.78
5950 6025 3.314080 GCCGCACTTTTAATAGCACCATA 59.686 43.478 0.00 0.00 0.00 2.74
5951 6026 2.099098 GCCGCACTTTTAATAGCACCAT 59.901 45.455 0.00 0.00 0.00 3.55
5952 6027 1.470890 GCCGCACTTTTAATAGCACCA 59.529 47.619 0.00 0.00 0.00 4.17
5953 6028 1.531058 CGCCGCACTTTTAATAGCACC 60.531 52.381 0.00 0.00 0.00 5.01
5954 6029 1.129811 ACGCCGCACTTTTAATAGCAC 59.870 47.619 0.00 0.00 0.00 4.40
5955 6030 1.444836 ACGCCGCACTTTTAATAGCA 58.555 45.000 0.00 0.00 0.00 3.49
5956 6031 2.173964 CAACGCCGCACTTTTAATAGC 58.826 47.619 0.00 0.00 0.00 2.97
5957 6032 2.173964 GCAACGCCGCACTTTTAATAG 58.826 47.619 0.00 0.00 0.00 1.73
6038 6113 7.542890 TGCAACAAGACAGAAAATTCAGTTAA 58.457 30.769 0.00 0.00 0.00 2.01
6067 6142 2.665185 AAGTCGTGCTCAACCCGC 60.665 61.111 0.00 0.00 0.00 6.13
6079 6154 1.144936 GGGATCAGCAGGGAAGTCG 59.855 63.158 0.00 0.00 0.00 4.18
6247 6329 5.432645 TGACCATGTTCTAGACAAAACACA 58.567 37.500 0.00 0.00 42.62 3.72
6379 6464 9.457436 AATGTTCTTTTGTTAATATCTACCGGT 57.543 29.630 13.98 13.98 0.00 5.28
6415 6500 4.102524 TGAGTGAAGGACCAGAAGCTTTTA 59.897 41.667 0.00 0.00 0.00 1.52
6444 6529 3.394606 GGTAGGGGCTCTGATTCCAAATA 59.605 47.826 0.00 0.00 0.00 1.40
6464 6549 8.320338 ACATTAGTGGATTTACTAAGCTAGGT 57.680 34.615 0.00 0.00 43.95 3.08
6650 6762 1.211212 TGAACCATGAGGCTGAGATGG 59.789 52.381 12.96 12.96 42.17 3.51
6664 6776 4.021544 GCAGAAATACCCACATTTGAACCA 60.022 41.667 0.00 0.00 0.00 3.67
6691 6803 0.106819 ATCAGGCAGCTCATGGTTCC 60.107 55.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.