Multiple sequence alignment - TraesCS5B01G289000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G289000 chr5B 100.000 2813 0 0 1 2813 474454665 474451853 0.000000e+00 5195.0
1 TraesCS5B01G289000 chr5B 83.263 950 99 31 1031 1956 428853102 428854015 0.000000e+00 819.0
2 TraesCS5B01G289000 chr5B 83.159 861 68 31 963 1768 474279255 474278417 0.000000e+00 715.0
3 TraesCS5B01G289000 chr5B 79.155 1113 84 69 1757 2813 474275133 474274113 3.950000e-178 634.0
4 TraesCS5B01G289000 chr5B 86.222 450 39 8 2378 2813 474268075 474267635 1.530000e-127 466.0
5 TraesCS5B01G289000 chr5B 89.655 319 22 3 453 760 428852065 428852383 2.030000e-106 396.0
6 TraesCS5B01G289000 chr5B 88.889 261 20 1 456 707 474301353 474301093 2.100000e-81 313.0
7 TraesCS5B01G289000 chr5B 81.297 401 40 18 1211 1580 474056348 474055952 2.740000e-75 292.0
8 TraesCS5B01G289000 chr5B 82.857 315 43 10 4 312 587767157 587767466 3.570000e-69 272.0
9 TraesCS5B01G289000 chr5B 82.623 305 48 4 11 313 106964859 106964558 5.970000e-67 265.0
10 TraesCS5B01G289000 chr5B 81.013 316 45 6 11 314 460219371 460219683 1.300000e-58 237.0
11 TraesCS5B01G289000 chr5B 87.692 130 13 3 1451 1580 474047673 474047547 6.280000e-32 148.0
12 TraesCS5B01G289000 chr5B 86.538 104 12 2 1956 2059 684901074 684900973 2.290000e-21 113.0
13 TraesCS5B01G289000 chr5B 82.692 104 16 2 1958 2060 270867545 270867647 1.070000e-14 91.6
14 TraesCS5B01G289000 chr5B 87.500 72 3 6 1955 2024 2570426 2570493 8.350000e-11 78.7
15 TraesCS5B01G289000 chr5B 88.333 60 5 2 1958 2017 381348810 381348753 1.400000e-08 71.3
16 TraesCS5B01G289000 chr5D 89.126 1361 63 30 455 1776 394549550 394548236 0.000000e+00 1615.0
17 TraesCS5B01G289000 chr5D 88.979 1361 63 28 455 1776 394551561 394550249 0.000000e+00 1602.0
18 TraesCS5B01G289000 chr5D 81.620 1556 130 72 501 1960 394281606 394280111 0.000000e+00 1146.0
19 TraesCS5B01G289000 chr5D 85.530 774 49 28 2056 2813 394241940 394241214 0.000000e+00 750.0
20 TraesCS5B01G289000 chr5D 80.301 797 76 36 2056 2812 394280115 394279360 6.900000e-146 527.0
21 TraesCS5B01G289000 chr5D 86.744 430 37 9 2395 2812 394533559 394533138 7.100000e-126 460.0
22 TraesCS5B01G289000 chr5D 87.755 343 21 8 1585 1907 394242296 394241955 5.690000e-102 381.0
23 TraesCS5B01G289000 chr5D 83.562 365 30 14 370 714 394583799 394583445 5.850000e-82 315.0
24 TraesCS5B01G289000 chr5D 81.794 379 40 11 1229 1580 394190507 394190131 9.860000e-75 291.0
25 TraesCS5B01G289000 chr5D 83.489 321 26 13 399 695 394563726 394563409 9.930000e-70 274.0
26 TraesCS5B01G289000 chr5D 86.979 192 10 7 1776 1956 394548153 394547966 4.750000e-48 202.0
27 TraesCS5B01G289000 chr5D 86.979 192 10 7 1776 1956 394550166 394549979 4.750000e-48 202.0
28 TraesCS5B01G289000 chr5D 77.354 393 43 23 778 1136 394563369 394562989 1.030000e-44 191.0
29 TraesCS5B01G289000 chr5D 86.170 94 3 5 872 960 394583367 394583279 2.980000e-15 93.5
30 TraesCS5B01G289000 chr5A 81.812 1490 134 59 371 1776 496567247 496565811 0.000000e+00 1123.0
31 TraesCS5B01G289000 chr5A 86.231 995 55 31 1013 1946 496205023 496204050 0.000000e+00 1003.0
32 TraesCS5B01G289000 chr5A 83.065 496 50 20 2237 2710 496565632 496565149 1.200000e-113 420.0
33 TraesCS5B01G289000 chr5A 86.984 315 12 10 434 731 496284671 496284369 7.510000e-86 327.0
34 TraesCS5B01G289000 chr5A 78.676 544 56 30 1230 1728 496175492 496174964 9.790000e-80 307.0
35 TraesCS5B01G289000 chr5A 81.199 367 38 14 1229 1565 496536464 496536099 1.660000e-67 267.0
36 TraesCS5B01G289000 chr5A 81.667 300 26 8 2373 2664 496199293 496199015 3.650000e-54 222.0
37 TraesCS5B01G289000 chr5A 77.670 309 63 6 11 316 653845567 653845262 1.720000e-42 183.0
38 TraesCS5B01G289000 chr5A 93.846 65 4 0 2749 2813 496564800 496564736 6.410000e-17 99.0
39 TraesCS5B01G289000 chr5A 91.667 48 2 2 727 773 496205106 496205060 6.500000e-07 65.8
40 TraesCS5B01G289000 chrUn 88.584 946 48 19 858 1776 332176690 332175778 0.000000e+00 1094.0
41 TraesCS5B01G289000 chrUn 84.112 321 24 13 399 695 211147906 211147589 4.590000e-73 285.0
42 TraesCS5B01G289000 chrUn 86.979 192 10 7 1776 1956 332175695 332175508 4.750000e-48 202.0
43 TraesCS5B01G289000 chrUn 77.608 393 42 23 778 1136 211147549 211147169 2.210000e-46 196.0
44 TraesCS5B01G289000 chrUn 94.118 51 2 1 2020 2070 79072229 79072180 3.000000e-10 76.8
45 TraesCS5B01G289000 chr2B 82.807 285 45 4 11 293 91815265 91815547 4.650000e-63 252.0
46 TraesCS5B01G289000 chr2B 78.981 314 52 6 11 313 745783391 745783081 4.750000e-48 202.0
47 TraesCS5B01G289000 chr2B 97.872 47 1 0 2013 2059 365952038 365951992 6.460000e-12 82.4
48 TraesCS5B01G289000 chr2B 85.938 64 7 2 1954 2017 719025734 719025673 1.810000e-07 67.6
49 TraesCS5B01G289000 chr4B 81.293 294 41 7 11 293 54642622 54642332 2.820000e-55 226.0
50 TraesCS5B01G289000 chr4B 76.699 206 29 11 11 202 398202532 398202332 2.310000e-16 97.1
51 TraesCS5B01G289000 chr4B 97.872 47 1 0 2013 2059 54366810 54366764 6.460000e-12 82.4
52 TraesCS5B01G289000 chr4B 97.436 39 1 0 1954 1992 75505359 75505397 1.810000e-07 67.6
53 TraesCS5B01G289000 chr4B 97.436 39 1 0 1954 1992 540035748 540035786 1.810000e-07 67.6
54 TraesCS5B01G289000 chr2A 84.375 224 32 3 11 233 698131226 698131005 1.700000e-52 217.0
55 TraesCS5B01G289000 chr2A 78.710 310 57 9 11 316 657507852 657508156 6.150000e-47 198.0
56 TraesCS5B01G289000 chr2A 94.000 50 3 0 2013 2062 141164341 141164292 3.000000e-10 76.8
57 TraesCS5B01G289000 chr3B 82.243 107 14 4 1958 2059 812573423 812573317 1.390000e-13 87.9
58 TraesCS5B01G289000 chr3B 97.436 39 1 0 1954 1992 173656415 173656453 1.810000e-07 67.6
59 TraesCS5B01G289000 chr7D 95.918 49 2 0 2013 2061 117638897 117638945 2.320000e-11 80.5
60 TraesCS5B01G289000 chr1D 80.833 120 8 4 1958 2063 491052649 491052531 2.320000e-11 80.5
61 TraesCS5B01G289000 chr1B 89.062 64 5 2 1954 2017 451270437 451270376 8.350000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G289000 chr5B 474451853 474454665 2812 True 5195.000000 5195 100.00000 1 2813 1 chr5B.!!$R7 2812
1 TraesCS5B01G289000 chr5B 474274113 474279255 5142 True 674.500000 715 81.15700 963 2813 2 chr5B.!!$R9 1850
2 TraesCS5B01G289000 chr5B 428852065 428854015 1950 False 607.500000 819 86.45900 453 1956 2 chr5B.!!$F5 1503
3 TraesCS5B01G289000 chr5D 394547966 394551561 3595 True 905.250000 1615 88.01575 455 1956 4 chr5D.!!$R5 1501
4 TraesCS5B01G289000 chr5D 394279360 394281606 2246 True 836.500000 1146 80.96050 501 2812 2 chr5D.!!$R4 2311
5 TraesCS5B01G289000 chr5D 394241214 394242296 1082 True 565.500000 750 86.64250 1585 2813 2 chr5D.!!$R3 1228
6 TraesCS5B01G289000 chr5D 394562989 394563726 737 True 232.500000 274 80.42150 399 1136 2 chr5D.!!$R6 737
7 TraesCS5B01G289000 chr5D 394583279 394583799 520 True 204.250000 315 84.86600 370 960 2 chr5D.!!$R7 590
8 TraesCS5B01G289000 chr5A 496564736 496567247 2511 True 547.333333 1123 86.24100 371 2813 3 chr5A.!!$R7 2442
9 TraesCS5B01G289000 chr5A 496204050 496205106 1056 True 534.400000 1003 88.94900 727 1946 2 chr5A.!!$R6 1219
10 TraesCS5B01G289000 chr5A 496174964 496175492 528 True 307.000000 307 78.67600 1230 1728 1 chr5A.!!$R1 498
11 TraesCS5B01G289000 chrUn 332175508 332176690 1182 True 648.000000 1094 87.78150 858 1956 2 chrUn.!!$R3 1098
12 TraesCS5B01G289000 chrUn 211147169 211147906 737 True 240.500000 285 80.86000 399 1136 2 chrUn.!!$R2 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.032952 CCGAACGACTGGAGTGGAAA 59.967 55.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 8131 0.239082 CAAGAAAGCGCATGCACTCA 59.761 50.0 19.57 0.0 46.23 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.432123 GGGGGCATGGCTACTAGC 59.568 66.667 19.78 0.00 41.46 3.42
37 38 3.237522 GCTACTAGCCGAACGACTG 57.762 57.895 0.00 0.00 34.48 3.51
38 39 0.248539 GCTACTAGCCGAACGACTGG 60.249 60.000 0.00 0.00 34.48 4.00
39 40 1.376543 CTACTAGCCGAACGACTGGA 58.623 55.000 1.02 0.00 0.00 3.86
40 41 1.331138 CTACTAGCCGAACGACTGGAG 59.669 57.143 1.02 0.00 0.00 3.86
41 42 0.608582 ACTAGCCGAACGACTGGAGT 60.609 55.000 1.02 0.00 0.00 3.85
42 43 0.179161 CTAGCCGAACGACTGGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
43 44 1.592400 TAGCCGAACGACTGGAGTGG 61.592 60.000 0.00 0.00 0.00 4.00
44 45 2.927580 GCCGAACGACTGGAGTGGA 61.928 63.158 0.00 0.00 0.00 4.02
45 46 1.663739 CCGAACGACTGGAGTGGAA 59.336 57.895 0.00 0.00 0.00 3.53
46 47 0.032952 CCGAACGACTGGAGTGGAAA 59.967 55.000 0.00 0.00 0.00 3.13
47 48 1.419374 CGAACGACTGGAGTGGAAAG 58.581 55.000 0.00 0.00 0.00 2.62
48 49 1.149148 GAACGACTGGAGTGGAAAGC 58.851 55.000 0.00 0.00 0.00 3.51
49 50 0.600255 AACGACTGGAGTGGAAAGCG 60.600 55.000 0.00 0.00 0.00 4.68
50 51 1.738099 CGACTGGAGTGGAAAGCGG 60.738 63.158 0.00 0.00 0.00 5.52
51 52 2.032681 ACTGGAGTGGAAAGCGGC 59.967 61.111 0.00 0.00 0.00 6.53
52 53 3.121030 CTGGAGTGGAAAGCGGCG 61.121 66.667 0.51 0.51 0.00 6.46
53 54 4.697756 TGGAGTGGAAAGCGGCGG 62.698 66.667 9.78 0.00 0.00 6.13
75 76 2.683933 GGCGGACAGGAGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
76 77 2.291043 GGCGGACAGGAGGAGGAAA 61.291 63.158 0.00 0.00 0.00 3.13
77 78 1.677552 GCGGACAGGAGGAGGAAAA 59.322 57.895 0.00 0.00 0.00 2.29
78 79 0.673956 GCGGACAGGAGGAGGAAAAC 60.674 60.000 0.00 0.00 0.00 2.43
79 80 0.389948 CGGACAGGAGGAGGAAAACG 60.390 60.000 0.00 0.00 0.00 3.60
80 81 0.685660 GGACAGGAGGAGGAAAACGT 59.314 55.000 0.00 0.00 0.00 3.99
81 82 1.608283 GGACAGGAGGAGGAAAACGTG 60.608 57.143 0.00 0.00 0.00 4.49
82 83 0.396811 ACAGGAGGAGGAAAACGTGG 59.603 55.000 0.00 0.00 0.00 4.94
83 84 0.685097 CAGGAGGAGGAAAACGTGGA 59.315 55.000 0.00 0.00 0.00 4.02
84 85 1.279271 CAGGAGGAGGAAAACGTGGAT 59.721 52.381 0.00 0.00 0.00 3.41
85 86 1.279271 AGGAGGAGGAAAACGTGGATG 59.721 52.381 0.00 0.00 0.00 3.51
86 87 1.679032 GGAGGAGGAAAACGTGGATGG 60.679 57.143 0.00 0.00 0.00 3.51
87 88 1.278127 GAGGAGGAAAACGTGGATGGA 59.722 52.381 0.00 0.00 0.00 3.41
88 89 1.916181 AGGAGGAAAACGTGGATGGAT 59.084 47.619 0.00 0.00 0.00 3.41
89 90 2.308866 AGGAGGAAAACGTGGATGGATT 59.691 45.455 0.00 0.00 0.00 3.01
90 91 2.423538 GGAGGAAAACGTGGATGGATTG 59.576 50.000 0.00 0.00 0.00 2.67
91 92 3.081804 GAGGAAAACGTGGATGGATTGT 58.918 45.455 0.00 0.00 0.00 2.71
92 93 4.258543 GAGGAAAACGTGGATGGATTGTA 58.741 43.478 0.00 0.00 0.00 2.41
93 94 4.261801 AGGAAAACGTGGATGGATTGTAG 58.738 43.478 0.00 0.00 0.00 2.74
94 95 3.377172 GGAAAACGTGGATGGATTGTAGG 59.623 47.826 0.00 0.00 0.00 3.18
95 96 2.710096 AACGTGGATGGATTGTAGGG 57.290 50.000 0.00 0.00 0.00 3.53
96 97 0.837272 ACGTGGATGGATTGTAGGGG 59.163 55.000 0.00 0.00 0.00 4.79
97 98 0.108585 CGTGGATGGATTGTAGGGGG 59.891 60.000 0.00 0.00 0.00 5.40
98 99 1.222567 GTGGATGGATTGTAGGGGGT 58.777 55.000 0.00 0.00 0.00 4.95
99 100 1.569072 GTGGATGGATTGTAGGGGGTT 59.431 52.381 0.00 0.00 0.00 4.11
100 101 2.024369 GTGGATGGATTGTAGGGGGTTT 60.024 50.000 0.00 0.00 0.00 3.27
101 102 2.243736 TGGATGGATTGTAGGGGGTTTC 59.756 50.000 0.00 0.00 0.00 2.78
102 103 2.243736 GGATGGATTGTAGGGGGTTTCA 59.756 50.000 0.00 0.00 0.00 2.69
103 104 3.555966 GATGGATTGTAGGGGGTTTCAG 58.444 50.000 0.00 0.00 0.00 3.02
104 105 2.354328 TGGATTGTAGGGGGTTTCAGT 58.646 47.619 0.00 0.00 0.00 3.41
105 106 3.533146 TGGATTGTAGGGGGTTTCAGTA 58.467 45.455 0.00 0.00 0.00 2.74
106 107 3.264964 TGGATTGTAGGGGGTTTCAGTAC 59.735 47.826 0.00 0.00 0.00 2.73
107 108 3.371273 GGATTGTAGGGGGTTTCAGTACC 60.371 52.174 0.00 0.00 37.47 3.34
108 109 1.269012 TGTAGGGGGTTTCAGTACCG 58.731 55.000 0.00 0.00 39.18 4.02
109 110 1.269958 GTAGGGGGTTTCAGTACCGT 58.730 55.000 0.00 0.00 39.18 4.83
110 111 1.205655 GTAGGGGGTTTCAGTACCGTC 59.794 57.143 0.00 0.00 39.18 4.79
111 112 1.079612 GGGGGTTTCAGTACCGTCG 60.080 63.158 0.00 0.00 39.18 5.12
112 113 1.079612 GGGGTTTCAGTACCGTCGG 60.080 63.158 10.48 10.48 39.18 4.79
113 114 1.667722 GGGTTTCAGTACCGTCGGT 59.332 57.895 22.66 22.66 39.18 4.69
114 115 0.389037 GGGTTTCAGTACCGTCGGTC 60.389 60.000 22.74 12.71 39.18 4.79
115 116 0.730494 GGTTTCAGTACCGTCGGTCG 60.730 60.000 22.74 11.10 37.09 4.79
116 117 0.238289 GTTTCAGTACCGTCGGTCGA 59.762 55.000 22.74 13.40 42.86 4.20
117 118 0.238289 TTTCAGTACCGTCGGTCGAC 59.762 55.000 22.74 14.92 42.86 4.20
118 119 0.603707 TTCAGTACCGTCGGTCGACT 60.604 55.000 22.74 17.17 42.54 4.18
119 120 0.603707 TCAGTACCGTCGGTCGACTT 60.604 55.000 22.74 9.96 42.54 3.01
120 121 1.078709 CAGTACCGTCGGTCGACTTA 58.921 55.000 22.74 0.00 42.54 2.24
121 122 1.464608 CAGTACCGTCGGTCGACTTAA 59.535 52.381 22.74 0.00 42.54 1.85
122 123 2.095768 CAGTACCGTCGGTCGACTTAAA 60.096 50.000 22.74 0.00 42.54 1.52
123 124 2.749621 AGTACCGTCGGTCGACTTAAAT 59.250 45.455 22.74 0.00 42.54 1.40
124 125 3.938963 AGTACCGTCGGTCGACTTAAATA 59.061 43.478 22.74 0.00 42.54 1.40
125 126 3.411415 ACCGTCGGTCGACTTAAATAG 57.589 47.619 12.23 1.53 42.54 1.73
126 127 2.749621 ACCGTCGGTCGACTTAAATAGT 59.250 45.455 12.23 2.16 42.54 2.12
127 128 4.034048 TACCGTCGGTCGACTTAAATAGTC 59.966 45.833 22.74 0.00 42.33 2.59
136 137 4.210832 GACTTAAATAGTCGGGCAATGC 57.789 45.455 0.00 0.00 43.59 3.56
137 138 3.616219 ACTTAAATAGTCGGGCAATGCA 58.384 40.909 7.79 0.00 28.23 3.96
138 139 3.377172 ACTTAAATAGTCGGGCAATGCAC 59.623 43.478 7.79 1.05 28.23 4.57
139 140 2.128771 AAATAGTCGGGCAATGCACT 57.871 45.000 5.74 3.78 0.00 4.40
140 141 3.275617 AAATAGTCGGGCAATGCACTA 57.724 42.857 5.74 6.14 0.00 2.74
141 142 2.240493 ATAGTCGGGCAATGCACTAC 57.760 50.000 5.74 4.69 0.00 2.73
142 143 0.179121 TAGTCGGGCAATGCACTACG 60.179 55.000 5.74 5.23 32.76 3.51
143 144 1.740296 GTCGGGCAATGCACTACGT 60.740 57.895 5.74 0.00 0.00 3.57
144 145 1.739929 TCGGGCAATGCACTACGTG 60.740 57.895 5.74 0.00 36.51 4.49
145 146 2.749865 CGGGCAATGCACTACGTGG 61.750 63.158 5.74 0.00 33.64 4.94
146 147 2.485122 GGCAATGCACTACGTGGC 59.515 61.111 7.79 0.00 33.64 5.01
147 148 2.485122 GCAATGCACTACGTGGCC 59.515 61.111 0.00 0.00 33.64 5.36
148 149 3.051392 GCAATGCACTACGTGGCCC 62.051 63.158 0.00 0.00 33.64 5.80
149 150 2.435938 AATGCACTACGTGGCCCG 60.436 61.111 11.48 11.48 44.03 6.13
150 151 3.969250 AATGCACTACGTGGCCCGG 62.969 63.158 16.44 0.00 42.24 5.73
173 174 4.980805 GGCGCCACCTGTTCGACA 62.981 66.667 24.80 0.00 34.51 4.35
174 175 2.970324 GCGCCACCTGTTCGACAA 60.970 61.111 0.00 0.00 0.00 3.18
175 176 2.539338 GCGCCACCTGTTCGACAAA 61.539 57.895 0.00 0.00 0.00 2.83
176 177 1.569493 CGCCACCTGTTCGACAAAG 59.431 57.895 0.00 0.00 0.00 2.77
177 178 1.841663 CGCCACCTGTTCGACAAAGG 61.842 60.000 5.82 5.82 37.11 3.11
178 179 0.534203 GCCACCTGTTCGACAAAGGA 60.534 55.000 12.90 0.00 34.97 3.36
179 180 1.512926 CCACCTGTTCGACAAAGGAG 58.487 55.000 12.90 6.08 34.97 3.69
180 181 1.070134 CCACCTGTTCGACAAAGGAGA 59.930 52.381 12.90 0.00 34.97 3.71
181 182 2.135933 CACCTGTTCGACAAAGGAGAC 58.864 52.381 12.90 0.00 34.97 3.36
182 183 1.269621 ACCTGTTCGACAAAGGAGACG 60.270 52.381 12.90 0.00 34.97 4.18
183 184 1.000607 CCTGTTCGACAAAGGAGACGA 60.001 52.381 1.71 0.00 32.43 4.20
184 185 2.320367 CTGTTCGACAAAGGAGACGAG 58.680 52.381 0.00 0.00 36.22 4.18
185 186 1.061485 GTTCGACAAAGGAGACGAGC 58.939 55.000 0.00 0.00 36.22 5.03
186 187 0.959553 TTCGACAAAGGAGACGAGCT 59.040 50.000 0.00 0.00 36.22 4.09
187 188 0.959553 TCGACAAAGGAGACGAGCTT 59.040 50.000 0.00 0.00 0.00 3.74
188 189 1.068472 TCGACAAAGGAGACGAGCTTC 60.068 52.381 0.00 0.00 0.00 3.86
189 190 1.335964 CGACAAAGGAGACGAGCTTCA 60.336 52.381 0.00 0.00 0.00 3.02
190 191 2.333014 GACAAAGGAGACGAGCTTCAG 58.667 52.381 0.00 0.00 0.00 3.02
191 192 1.964223 ACAAAGGAGACGAGCTTCAGA 59.036 47.619 0.00 0.00 0.00 3.27
192 193 2.288518 ACAAAGGAGACGAGCTTCAGAC 60.289 50.000 0.00 0.00 0.00 3.51
193 194 0.892063 AAGGAGACGAGCTTCAGACC 59.108 55.000 0.00 0.00 0.00 3.85
194 195 1.137825 GGAGACGAGCTTCAGACCG 59.862 63.158 0.00 0.00 0.00 4.79
195 196 1.515304 GAGACGAGCTTCAGACCGC 60.515 63.158 0.00 0.00 0.00 5.68
196 197 2.507324 GACGAGCTTCAGACCGCC 60.507 66.667 0.00 0.00 0.00 6.13
197 198 4.421479 ACGAGCTTCAGACCGCCG 62.421 66.667 0.00 0.00 0.00 6.46
199 200 4.821589 GAGCTTCAGACCGCCGGG 62.822 72.222 8.57 0.00 40.11 5.73
211 212 2.124860 GCCGGGTTAGATGGCGTT 60.125 61.111 2.18 0.00 39.30 4.84
212 213 1.747745 GCCGGGTTAGATGGCGTTT 60.748 57.895 2.18 0.00 39.30 3.60
213 214 1.310216 GCCGGGTTAGATGGCGTTTT 61.310 55.000 2.18 0.00 39.30 2.43
214 215 0.730840 CCGGGTTAGATGGCGTTTTC 59.269 55.000 0.00 0.00 0.00 2.29
226 227 4.391869 GTTTTCGACTGGGACCCC 57.608 61.111 8.45 2.69 0.00 4.95
227 228 1.759236 GTTTTCGACTGGGACCCCT 59.241 57.895 8.45 0.00 36.94 4.79
228 229 0.109913 GTTTTCGACTGGGACCCCTT 59.890 55.000 8.45 0.00 36.94 3.95
229 230 0.399075 TTTTCGACTGGGACCCCTTC 59.601 55.000 8.45 3.03 36.94 3.46
230 231 1.823169 TTTCGACTGGGACCCCTTCG 61.823 60.000 20.19 20.19 40.90 3.79
231 232 2.995574 CGACTGGGACCCCTTCGT 60.996 66.667 18.64 7.05 37.46 3.85
232 233 2.979649 GACTGGGACCCCTTCGTC 59.020 66.667 8.45 5.87 36.94 4.20
233 234 1.911766 GACTGGGACCCCTTCGTCA 60.912 63.158 8.45 0.00 36.94 4.35
234 235 1.460689 ACTGGGACCCCTTCGTCAA 60.461 57.895 8.45 0.00 36.94 3.18
235 236 0.840722 ACTGGGACCCCTTCGTCAAT 60.841 55.000 8.45 0.00 36.94 2.57
236 237 0.107654 CTGGGACCCCTTCGTCAATC 60.108 60.000 8.45 0.00 36.94 2.67
237 238 0.546747 TGGGACCCCTTCGTCAATCT 60.547 55.000 8.45 0.00 36.94 2.40
238 239 0.107654 GGGACCCCTTCGTCAATCTG 60.108 60.000 0.00 0.00 34.24 2.90
239 240 0.902531 GGACCCCTTCGTCAATCTGA 59.097 55.000 0.00 0.00 34.24 3.27
240 241 1.405661 GGACCCCTTCGTCAATCTGAC 60.406 57.143 0.00 0.00 43.65 3.51
248 249 3.442996 GTCAATCTGACGTGGAGGG 57.557 57.895 0.00 0.00 37.67 4.30
249 250 0.608640 GTCAATCTGACGTGGAGGGT 59.391 55.000 0.00 0.00 37.67 4.34
250 251 0.608130 TCAATCTGACGTGGAGGGTG 59.392 55.000 0.00 0.00 0.00 4.61
251 252 1.021390 CAATCTGACGTGGAGGGTGC 61.021 60.000 0.00 0.00 0.00 5.01
252 253 2.507110 AATCTGACGTGGAGGGTGCG 62.507 60.000 0.00 0.00 0.00 5.34
278 279 3.174987 CCCCATGCCCGTCCCATA 61.175 66.667 0.00 0.00 0.00 2.74
279 280 2.538141 CCCCATGCCCGTCCCATAT 61.538 63.158 0.00 0.00 0.00 1.78
280 281 1.460255 CCCATGCCCGTCCCATATT 59.540 57.895 0.00 0.00 0.00 1.28
281 282 0.178964 CCCATGCCCGTCCCATATTT 60.179 55.000 0.00 0.00 0.00 1.40
282 283 1.074727 CCCATGCCCGTCCCATATTTA 59.925 52.381 0.00 0.00 0.00 1.40
283 284 2.436417 CCATGCCCGTCCCATATTTAG 58.564 52.381 0.00 0.00 0.00 1.85
284 285 2.436417 CATGCCCGTCCCATATTTAGG 58.564 52.381 0.00 0.00 0.00 2.69
285 286 0.109723 TGCCCGTCCCATATTTAGGC 59.890 55.000 0.00 0.00 39.41 3.93
286 287 0.400594 GCCCGTCCCATATTTAGGCT 59.599 55.000 0.00 0.00 36.00 4.58
287 288 1.882352 GCCCGTCCCATATTTAGGCTG 60.882 57.143 0.00 0.00 36.00 4.85
288 289 1.271379 CCCGTCCCATATTTAGGCTGG 60.271 57.143 0.00 0.00 0.00 4.85
289 290 1.697432 CCGTCCCATATTTAGGCTGGA 59.303 52.381 0.00 0.00 31.38 3.86
290 291 2.305927 CCGTCCCATATTTAGGCTGGAT 59.694 50.000 0.00 0.00 31.38 3.41
291 292 3.517901 CCGTCCCATATTTAGGCTGGATA 59.482 47.826 0.00 0.00 31.38 2.59
292 293 4.164221 CCGTCCCATATTTAGGCTGGATAT 59.836 45.833 0.00 0.00 31.38 1.63
293 294 5.365605 CCGTCCCATATTTAGGCTGGATATA 59.634 44.000 0.00 0.00 31.38 0.86
294 295 6.126883 CCGTCCCATATTTAGGCTGGATATAA 60.127 42.308 0.00 0.00 31.38 0.98
295 296 6.986817 CGTCCCATATTTAGGCTGGATATAAG 59.013 42.308 0.00 0.00 31.38 1.73
296 297 7.283329 GTCCCATATTTAGGCTGGATATAAGG 58.717 42.308 0.00 5.74 31.38 2.69
297 298 7.127339 GTCCCATATTTAGGCTGGATATAAGGA 59.873 40.741 0.00 7.76 31.38 3.36
298 299 7.348274 TCCCATATTTAGGCTGGATATAAGGAG 59.652 40.741 0.00 0.00 31.38 3.69
299 300 7.127955 CCCATATTTAGGCTGGATATAAGGAGT 59.872 40.741 0.00 0.00 31.38 3.85
300 301 8.552296 CCATATTTAGGCTGGATATAAGGAGTT 58.448 37.037 0.00 0.00 31.38 3.01
301 302 9.606631 CATATTTAGGCTGGATATAAGGAGTTC 57.393 37.037 0.00 0.00 0.00 3.01
302 303 6.435292 TTTAGGCTGGATATAAGGAGTTCC 57.565 41.667 0.00 0.00 0.00 3.62
303 304 2.900546 AGGCTGGATATAAGGAGTTCCG 59.099 50.000 0.00 0.00 42.08 4.30
304 305 2.028020 GGCTGGATATAAGGAGTTCCGG 60.028 54.545 0.00 0.00 42.08 5.14
305 306 3.320673 CTGGATATAAGGAGTTCCGGC 57.679 52.381 0.00 0.00 42.08 6.13
306 307 1.975680 TGGATATAAGGAGTTCCGGCC 59.024 52.381 0.00 0.00 42.08 6.13
307 308 1.975680 GGATATAAGGAGTTCCGGCCA 59.024 52.381 2.24 0.00 42.08 5.36
308 309 2.028020 GGATATAAGGAGTTCCGGCCAG 60.028 54.545 2.24 0.00 42.08 4.85
309 310 0.756903 TATAAGGAGTTCCGGCCAGC 59.243 55.000 2.24 0.00 42.08 4.85
310 311 1.984288 ATAAGGAGTTCCGGCCAGCC 61.984 60.000 2.24 0.00 42.08 4.85
388 389 1.296727 GGTTGTAGGGCTGATTACGC 58.703 55.000 0.00 0.00 0.00 4.42
389 390 1.296727 GTTGTAGGGCTGATTACGCC 58.703 55.000 0.00 0.00 46.83 5.68
397 398 1.296056 GCTGATTACGCCACGGTTGT 61.296 55.000 0.00 0.00 0.00 3.32
418 419 6.870971 TGTTTAGAGTAACCGAGCAAATTT 57.129 33.333 0.00 0.00 0.00 1.82
422 423 5.358298 AGAGTAACCGAGCAAATTTTCAC 57.642 39.130 0.00 0.00 0.00 3.18
449 461 4.400251 TCTCCATTAACGGTGTAACTCGAT 59.600 41.667 0.00 0.00 36.74 3.59
450 462 5.075858 TCCATTAACGGTGTAACTCGATT 57.924 39.130 0.00 0.00 36.74 3.34
451 463 4.865925 TCCATTAACGGTGTAACTCGATTG 59.134 41.667 0.00 0.00 36.74 2.67
452 464 4.493545 CCATTAACGGTGTAACTCGATTGC 60.494 45.833 0.00 0.00 36.74 3.56
453 465 1.065358 AACGGTGTAACTCGATTGCG 58.935 50.000 0.00 0.00 36.74 4.85
497 519 1.891150 GAACCGAACACCTCAGTCCTA 59.109 52.381 0.00 0.00 0.00 2.94
499 521 0.170561 CCGAACACCTCAGTCCTACG 59.829 60.000 0.00 0.00 0.00 3.51
507 529 2.688958 ACCTCAGTCCTACGTAATCTGC 59.311 50.000 13.13 0.00 0.00 4.26
605 638 3.361147 CGCAGCGTCGCAAAATTTAAAAA 60.361 39.130 21.09 0.00 0.00 1.94
619 653 9.476761 CAAAATTTAAAAATTCTAATCAGCCGC 57.523 29.630 1.36 0.00 37.62 6.53
636 670 2.079158 CCGCTGATGATGCCGAAATAT 58.921 47.619 0.00 0.00 0.00 1.28
637 671 3.261580 CCGCTGATGATGCCGAAATATA 58.738 45.455 0.00 0.00 0.00 0.86
638 672 3.873361 CCGCTGATGATGCCGAAATATAT 59.127 43.478 0.00 0.00 0.00 0.86
639 673 5.049828 CCGCTGATGATGCCGAAATATATA 58.950 41.667 0.00 0.00 0.00 0.86
828 881 2.215191 TGGAGTGCCATAGCTGAGG 58.785 57.895 0.00 0.00 39.92 3.86
829 882 1.340399 TGGAGTGCCATAGCTGAGGG 61.340 60.000 0.00 0.00 39.92 4.30
961 1058 3.414700 GCTTCGACGCCACACCAG 61.415 66.667 1.75 0.00 0.00 4.00
1001 1140 1.822613 CATACAGCCAGCCAGCCAG 60.823 63.158 0.00 0.00 0.00 4.85
1002 1141 3.711059 ATACAGCCAGCCAGCCAGC 62.711 63.158 0.00 0.00 0.00 4.85
1058 1676 3.314331 CCCACTCACTCACCGGCT 61.314 66.667 0.00 0.00 0.00 5.52
1069 1689 3.710722 ACCGGCTCCAGCTTCCTG 61.711 66.667 0.00 0.00 41.70 3.86
1087 1715 3.641906 TCCTGTTCTTCCTCTTCTTCGTT 59.358 43.478 0.00 0.00 0.00 3.85
1120 1763 3.316588 TCGTATCTCATTCTGTCTGCTCC 59.683 47.826 0.00 0.00 0.00 4.70
1149 1792 1.869767 CTGAATCAGATGGCGGTAAGC 59.130 52.381 3.77 0.00 38.34 3.09
1166 1819 4.994471 CGTGCTGTGAGCCAGGCA 62.994 66.667 15.80 0.00 41.51 4.75
1204 1857 3.077359 CAACTTCACTGACCCAGAATCC 58.923 50.000 0.45 0.00 35.18 3.01
1227 1886 4.260907 CGAGTCCTTATTATCGTTCGGTCA 60.261 45.833 0.00 0.00 0.00 4.02
1411 4150 2.439156 GCCCAAGAAGCAGGCGAT 60.439 61.111 0.00 0.00 36.84 4.58
1580 4367 2.226437 CGGTCCACCAAGAAAGAATGTG 59.774 50.000 0.00 0.00 35.14 3.21
1582 4369 3.636764 GGTCCACCAAGAAAGAATGTGTT 59.363 43.478 0.00 0.00 35.64 3.32
1599 4400 7.537306 AGAATGTGTTATATTTTTGTCGTGTGC 59.463 33.333 0.00 0.00 0.00 4.57
1742 4554 2.507102 CGTGCGTCTTCATCGGCT 60.507 61.111 0.00 0.00 0.00 5.52
1790 7978 7.068348 TGGATATACACTAGTTCTGTCCAGTTC 59.932 40.741 9.30 0.00 30.99 3.01
1918 8131 9.474313 AAAATGTATAGTTCTGTCTCTCTCTCT 57.526 33.333 0.00 0.00 0.00 3.10
1947 8160 1.372128 GCTTTCTTGGCTTGTGGCG 60.372 57.895 0.00 0.00 42.94 5.69
1951 8164 4.389576 CTTGGCTTGTGGCGCGAC 62.390 66.667 16.33 16.33 42.94 5.19
1956 8169 3.179265 CTTGTGGCGCGACGGTAG 61.179 66.667 17.92 10.82 0.00 3.18
1957 8170 3.909258 CTTGTGGCGCGACGGTAGT 62.909 63.158 17.92 0.00 0.00 2.73
1961 8174 2.023882 GGCGCGACGGTAGTACTC 59.976 66.667 12.10 0.00 0.00 2.59
1969 8182 2.700329 CGGTAGTACTCCCTCCGTC 58.300 63.158 0.00 0.00 36.99 4.79
1972 8185 1.341383 GGTAGTACTCCCTCCGTCCAA 60.341 57.143 0.00 0.00 0.00 3.53
1994 8207 9.921637 TCCAAAAATACTTGTCATCAAAATACC 57.078 29.630 0.00 0.00 32.87 2.73
1995 8208 9.703892 CCAAAAATACTTGTCATCAAAATACCA 57.296 29.630 0.00 0.00 32.87 3.25
2004 8217 8.875803 CTTGTCATCAAAATACCATCAAAATGG 58.124 33.333 2.90 2.90 44.12 3.16
2047 8285 7.387397 TCCATTTTGATGACAAGTATTTTTGGC 59.613 33.333 0.00 0.00 37.32 4.52
2160 8398 1.466167 GCAACATCTCGTCATGTGCTT 59.534 47.619 3.27 0.00 37.07 3.91
2161 8399 2.475187 GCAACATCTCGTCATGTGCTTC 60.475 50.000 3.27 0.00 37.07 3.86
2240 8480 1.472480 GGGGGTGTTTGTCATCATTCG 59.528 52.381 0.00 0.00 0.00 3.34
2245 8485 3.155998 GTGTTTGTCATCATTCGCTTCG 58.844 45.455 0.00 0.00 0.00 3.79
2268 8517 3.027412 AGATGGCAACTGATAGACGAGT 58.973 45.455 0.00 0.00 37.61 4.18
2294 8552 4.988598 CCCACCGTTCTGCTGCGT 62.989 66.667 0.00 0.00 0.00 5.24
2296 8554 2.661537 CACCGTTCTGCTGCGTGA 60.662 61.111 0.00 0.00 0.00 4.35
2326 8591 3.737172 GCAGTTCGCGTGGGCAAT 61.737 61.111 5.77 0.00 39.92 3.56
2327 8592 2.395360 GCAGTTCGCGTGGGCAATA 61.395 57.895 5.77 0.00 39.92 1.90
2328 8593 1.715585 CAGTTCGCGTGGGCAATAG 59.284 57.895 5.77 0.00 39.92 1.73
2329 8594 1.019278 CAGTTCGCGTGGGCAATAGT 61.019 55.000 5.77 0.00 39.92 2.12
2330 8595 0.321298 AGTTCGCGTGGGCAATAGTT 60.321 50.000 5.77 0.00 39.92 2.24
2349 8614 1.739562 GCTGCGAGGTCTGGTGAAG 60.740 63.158 0.00 0.00 0.00 3.02
2355 8620 0.321122 GAGGTCTGGTGAAGCTGGTG 60.321 60.000 0.00 0.00 0.00 4.17
2369 8634 0.806868 CTGGTGCACGCATTGATTCT 59.193 50.000 11.45 0.00 0.00 2.40
2405 8670 1.599542 GTTGCTGTGAACTCACTGGTC 59.400 52.381 15.77 4.00 46.55 4.02
2409 8674 2.609244 GCTGTGAACTCACTGGTCTCTC 60.609 54.545 15.77 0.00 46.55 3.20
2464 8729 2.606108 CCGTGTCATTCAACTCGATCA 58.394 47.619 0.00 0.00 38.14 2.92
2466 8731 3.245797 CGTGTCATTCAACTCGATCAGT 58.754 45.455 0.00 0.00 38.14 3.41
2469 8734 4.325741 GTGTCATTCAACTCGATCAGTCAG 59.674 45.833 0.00 0.00 32.30 3.51
2470 8735 3.305629 GTCATTCAACTCGATCAGTCAGC 59.694 47.826 0.00 0.00 32.30 4.26
2479 8749 1.673923 CGATCAGTCAGCCACACACAT 60.674 52.381 0.00 0.00 0.00 3.21
2529 8807 2.688958 ACCGCAGATAGTGAGAGTAACC 59.311 50.000 0.00 0.00 0.00 2.85
2541 8819 2.017049 AGAGTAACCATTTCGGCATGC 58.983 47.619 9.90 9.90 39.03 4.06
2543 8821 0.865639 GTAACCATTTCGGCATGCGC 60.866 55.000 12.44 0.00 39.03 6.09
2582 8860 0.618458 ATCGAGCAGGGCCAAAAGTA 59.382 50.000 6.18 0.00 0.00 2.24
2585 8863 0.888619 GAGCAGGGCCAAAAGTAACC 59.111 55.000 6.18 0.00 0.00 2.85
2783 9403 0.179067 TTTCCCTTCTCGTTGCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.432123 GCTAGTAGCCATGCCCCC 59.568 66.667 11.33 0.00 34.48 5.40
19 20 0.248539 CCAGTCGTTCGGCTAGTAGC 60.249 60.000 14.09 14.09 41.46 3.58
20 21 1.331138 CTCCAGTCGTTCGGCTAGTAG 59.669 57.143 0.00 0.00 0.00 2.57
21 22 1.339438 ACTCCAGTCGTTCGGCTAGTA 60.339 52.381 0.00 0.00 0.00 1.82
22 23 0.608582 ACTCCAGTCGTTCGGCTAGT 60.609 55.000 0.00 0.00 0.00 2.57
23 24 0.179161 CACTCCAGTCGTTCGGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
24 25 1.592400 CCACTCCAGTCGTTCGGCTA 61.592 60.000 0.00 0.00 0.00 3.93
25 26 2.651361 CACTCCAGTCGTTCGGCT 59.349 61.111 0.00 0.00 0.00 5.52
26 27 2.430382 TTCCACTCCAGTCGTTCGGC 62.430 60.000 0.00 0.00 0.00 5.54
27 28 0.032952 TTTCCACTCCAGTCGTTCGG 59.967 55.000 0.00 0.00 0.00 4.30
28 29 1.419374 CTTTCCACTCCAGTCGTTCG 58.581 55.000 0.00 0.00 0.00 3.95
29 30 1.149148 GCTTTCCACTCCAGTCGTTC 58.851 55.000 0.00 0.00 0.00 3.95
30 31 0.600255 CGCTTTCCACTCCAGTCGTT 60.600 55.000 0.00 0.00 0.00 3.85
31 32 1.006102 CGCTTTCCACTCCAGTCGT 60.006 57.895 0.00 0.00 0.00 4.34
32 33 1.738099 CCGCTTTCCACTCCAGTCG 60.738 63.158 0.00 0.00 0.00 4.18
33 34 2.035442 GCCGCTTTCCACTCCAGTC 61.035 63.158 0.00 0.00 0.00 3.51
34 35 2.032681 GCCGCTTTCCACTCCAGT 59.967 61.111 0.00 0.00 0.00 4.00
35 36 3.121030 CGCCGCTTTCCACTCCAG 61.121 66.667 0.00 0.00 0.00 3.86
36 37 4.697756 CCGCCGCTTTCCACTCCA 62.698 66.667 0.00 0.00 0.00 3.86
58 59 1.838073 TTTTCCTCCTCCTGTCCGCC 61.838 60.000 0.00 0.00 0.00 6.13
59 60 0.673956 GTTTTCCTCCTCCTGTCCGC 60.674 60.000 0.00 0.00 0.00 5.54
60 61 0.389948 CGTTTTCCTCCTCCTGTCCG 60.390 60.000 0.00 0.00 0.00 4.79
61 62 0.685660 ACGTTTTCCTCCTCCTGTCC 59.314 55.000 0.00 0.00 0.00 4.02
62 63 1.608283 CCACGTTTTCCTCCTCCTGTC 60.608 57.143 0.00 0.00 0.00 3.51
63 64 0.396811 CCACGTTTTCCTCCTCCTGT 59.603 55.000 0.00 0.00 0.00 4.00
64 65 0.685097 TCCACGTTTTCCTCCTCCTG 59.315 55.000 0.00 0.00 0.00 3.86
65 66 1.279271 CATCCACGTTTTCCTCCTCCT 59.721 52.381 0.00 0.00 0.00 3.69
66 67 1.679032 CCATCCACGTTTTCCTCCTCC 60.679 57.143 0.00 0.00 0.00 4.30
67 68 1.278127 TCCATCCACGTTTTCCTCCTC 59.722 52.381 0.00 0.00 0.00 3.71
68 69 1.358152 TCCATCCACGTTTTCCTCCT 58.642 50.000 0.00 0.00 0.00 3.69
69 70 2.420058 ATCCATCCACGTTTTCCTCC 57.580 50.000 0.00 0.00 0.00 4.30
70 71 3.081804 ACAATCCATCCACGTTTTCCTC 58.918 45.455 0.00 0.00 0.00 3.71
71 72 3.154827 ACAATCCATCCACGTTTTCCT 57.845 42.857 0.00 0.00 0.00 3.36
72 73 3.377172 CCTACAATCCATCCACGTTTTCC 59.623 47.826 0.00 0.00 0.00 3.13
73 74 3.377172 CCCTACAATCCATCCACGTTTTC 59.623 47.826 0.00 0.00 0.00 2.29
74 75 3.352648 CCCTACAATCCATCCACGTTTT 58.647 45.455 0.00 0.00 0.00 2.43
75 76 2.356741 CCCCTACAATCCATCCACGTTT 60.357 50.000 0.00 0.00 0.00 3.60
76 77 1.211949 CCCCTACAATCCATCCACGTT 59.788 52.381 0.00 0.00 0.00 3.99
77 78 0.837272 CCCCTACAATCCATCCACGT 59.163 55.000 0.00 0.00 0.00 4.49
78 79 0.108585 CCCCCTACAATCCATCCACG 59.891 60.000 0.00 0.00 0.00 4.94
79 80 1.222567 ACCCCCTACAATCCATCCAC 58.777 55.000 0.00 0.00 0.00 4.02
80 81 1.994399 AACCCCCTACAATCCATCCA 58.006 50.000 0.00 0.00 0.00 3.41
81 82 2.243736 TGAAACCCCCTACAATCCATCC 59.756 50.000 0.00 0.00 0.00 3.51
82 83 3.053619 ACTGAAACCCCCTACAATCCATC 60.054 47.826 0.00 0.00 0.00 3.51
83 84 2.926329 ACTGAAACCCCCTACAATCCAT 59.074 45.455 0.00 0.00 0.00 3.41
84 85 2.354328 ACTGAAACCCCCTACAATCCA 58.646 47.619 0.00 0.00 0.00 3.41
85 86 3.371273 GGTACTGAAACCCCCTACAATCC 60.371 52.174 0.00 0.00 33.02 3.01
86 87 3.680754 CGGTACTGAAACCCCCTACAATC 60.681 52.174 0.00 0.00 36.03 2.67
87 88 2.237893 CGGTACTGAAACCCCCTACAAT 59.762 50.000 0.00 0.00 36.03 2.71
88 89 1.624813 CGGTACTGAAACCCCCTACAA 59.375 52.381 0.00 0.00 36.03 2.41
89 90 1.269012 CGGTACTGAAACCCCCTACA 58.731 55.000 0.00 0.00 36.03 2.74
90 91 1.205655 GACGGTACTGAAACCCCCTAC 59.794 57.143 9.17 0.00 36.03 3.18
91 92 1.560505 GACGGTACTGAAACCCCCTA 58.439 55.000 9.17 0.00 36.03 3.53
92 93 1.538687 CGACGGTACTGAAACCCCCT 61.539 60.000 9.17 0.00 36.03 4.79
93 94 1.079612 CGACGGTACTGAAACCCCC 60.080 63.158 9.17 0.00 36.03 5.40
94 95 1.079612 CCGACGGTACTGAAACCCC 60.080 63.158 9.17 0.00 36.03 4.95
95 96 0.389037 GACCGACGGTACTGAAACCC 60.389 60.000 21.79 0.00 35.25 4.11
96 97 0.730494 CGACCGACGGTACTGAAACC 60.730 60.000 21.79 3.58 35.25 3.27
97 98 0.238289 TCGACCGACGGTACTGAAAC 59.762 55.000 21.79 4.39 42.82 2.78
98 99 0.238289 GTCGACCGACGGTACTGAAA 59.762 55.000 21.79 0.00 42.82 2.69
99 100 1.868997 GTCGACCGACGGTACTGAA 59.131 57.895 21.79 0.60 42.82 3.02
100 101 3.566261 GTCGACCGACGGTACTGA 58.434 61.111 21.79 15.36 42.82 3.41
116 117 3.377172 GTGCATTGCCCGACTATTTAAGT 59.623 43.478 6.12 0.00 42.80 2.24
117 118 3.627577 AGTGCATTGCCCGACTATTTAAG 59.372 43.478 6.12 0.00 0.00 1.85
118 119 3.616219 AGTGCATTGCCCGACTATTTAA 58.384 40.909 6.12 0.00 0.00 1.52
119 120 3.275617 AGTGCATTGCCCGACTATTTA 57.724 42.857 6.12 0.00 0.00 1.40
120 121 2.128771 AGTGCATTGCCCGACTATTT 57.871 45.000 6.12 0.00 0.00 1.40
121 122 2.561569 GTAGTGCATTGCCCGACTATT 58.438 47.619 6.12 0.00 0.00 1.73
122 123 1.538204 CGTAGTGCATTGCCCGACTAT 60.538 52.381 6.12 0.00 0.00 2.12
123 124 0.179121 CGTAGTGCATTGCCCGACTA 60.179 55.000 6.12 4.78 0.00 2.59
124 125 1.447838 CGTAGTGCATTGCCCGACT 60.448 57.895 6.12 5.79 0.00 4.18
125 126 1.740296 ACGTAGTGCATTGCCCGAC 60.740 57.895 6.12 0.00 42.51 4.79
126 127 2.660206 ACGTAGTGCATTGCCCGA 59.340 55.556 6.12 0.00 42.51 5.14
156 157 4.980805 TGTCGAACAGGTGGCGCC 62.981 66.667 22.73 22.73 37.58 6.53
157 158 2.443957 CTTTGTCGAACAGGTGGCGC 62.444 60.000 0.00 0.00 0.00 6.53
158 159 1.569493 CTTTGTCGAACAGGTGGCG 59.431 57.895 0.00 0.00 0.00 5.69
159 160 0.534203 TCCTTTGTCGAACAGGTGGC 60.534 55.000 5.85 0.00 0.00 5.01
160 161 1.070134 TCTCCTTTGTCGAACAGGTGG 59.930 52.381 5.85 2.15 0.00 4.61
161 162 2.135933 GTCTCCTTTGTCGAACAGGTG 58.864 52.381 5.85 4.25 0.00 4.00
162 163 1.269621 CGTCTCCTTTGTCGAACAGGT 60.270 52.381 5.85 0.00 0.00 4.00
163 164 1.000607 TCGTCTCCTTTGTCGAACAGG 60.001 52.381 0.00 0.00 0.00 4.00
164 165 2.320367 CTCGTCTCCTTTGTCGAACAG 58.680 52.381 0.00 0.00 32.12 3.16
165 166 1.602165 GCTCGTCTCCTTTGTCGAACA 60.602 52.381 0.00 0.00 32.12 3.18
166 167 1.061485 GCTCGTCTCCTTTGTCGAAC 58.939 55.000 0.00 0.00 32.12 3.95
167 168 0.959553 AGCTCGTCTCCTTTGTCGAA 59.040 50.000 0.00 0.00 32.12 3.71
168 169 0.959553 AAGCTCGTCTCCTTTGTCGA 59.040 50.000 0.00 0.00 0.00 4.20
169 170 1.335964 TGAAGCTCGTCTCCTTTGTCG 60.336 52.381 0.00 0.00 0.00 4.35
170 171 2.029828 TCTGAAGCTCGTCTCCTTTGTC 60.030 50.000 0.00 0.00 0.00 3.18
171 172 1.964223 TCTGAAGCTCGTCTCCTTTGT 59.036 47.619 0.00 0.00 0.00 2.83
172 173 2.333014 GTCTGAAGCTCGTCTCCTTTG 58.667 52.381 0.00 0.00 0.00 2.77
173 174 1.273886 GGTCTGAAGCTCGTCTCCTTT 59.726 52.381 0.00 0.00 0.00 3.11
174 175 0.892063 GGTCTGAAGCTCGTCTCCTT 59.108 55.000 0.00 0.00 0.00 3.36
175 176 1.309499 CGGTCTGAAGCTCGTCTCCT 61.309 60.000 0.00 0.00 0.00 3.69
176 177 1.137825 CGGTCTGAAGCTCGTCTCC 59.862 63.158 0.00 0.00 0.00 3.71
177 178 1.515304 GCGGTCTGAAGCTCGTCTC 60.515 63.158 0.00 0.00 0.00 3.36
178 179 2.569134 GCGGTCTGAAGCTCGTCT 59.431 61.111 0.00 0.00 0.00 4.18
179 180 2.507324 GGCGGTCTGAAGCTCGTC 60.507 66.667 6.38 0.00 0.00 4.20
180 181 4.421479 CGGCGGTCTGAAGCTCGT 62.421 66.667 0.00 0.00 0.00 4.18
182 183 4.821589 CCCGGCGGTCTGAAGCTC 62.822 72.222 26.32 0.00 0.00 4.09
184 185 3.305177 TAACCCGGCGGTCTGAAGC 62.305 63.158 26.32 0.00 43.71 3.86
185 186 1.153628 CTAACCCGGCGGTCTGAAG 60.154 63.158 26.32 10.81 43.71 3.02
186 187 0.974010 ATCTAACCCGGCGGTCTGAA 60.974 55.000 26.32 7.63 43.71 3.02
187 188 1.380785 ATCTAACCCGGCGGTCTGA 60.381 57.895 26.32 16.81 43.71 3.27
188 189 1.227263 CATCTAACCCGGCGGTCTG 60.227 63.158 26.32 12.44 43.71 3.51
189 190 2.432300 CCATCTAACCCGGCGGTCT 61.432 63.158 26.32 13.78 43.71 3.85
190 191 2.108362 CCATCTAACCCGGCGGTC 59.892 66.667 26.32 0.00 43.71 4.79
194 195 1.310216 AAAACGCCATCTAACCCGGC 61.310 55.000 0.00 0.00 42.64 6.13
195 196 0.730840 GAAAACGCCATCTAACCCGG 59.269 55.000 0.00 0.00 0.00 5.73
196 197 0.372334 CGAAAACGCCATCTAACCCG 59.628 55.000 0.00 0.00 0.00 5.28
197 198 1.395954 GTCGAAAACGCCATCTAACCC 59.604 52.381 0.00 0.00 0.00 4.11
198 199 2.093783 CAGTCGAAAACGCCATCTAACC 59.906 50.000 0.00 0.00 0.00 2.85
199 200 2.093783 CCAGTCGAAAACGCCATCTAAC 59.906 50.000 0.00 0.00 0.00 2.34
200 201 2.343101 CCAGTCGAAAACGCCATCTAA 58.657 47.619 0.00 0.00 0.00 2.10
201 202 1.404986 CCCAGTCGAAAACGCCATCTA 60.405 52.381 0.00 0.00 0.00 1.98
202 203 0.673644 CCCAGTCGAAAACGCCATCT 60.674 55.000 0.00 0.00 0.00 2.90
203 204 0.672401 TCCCAGTCGAAAACGCCATC 60.672 55.000 0.00 0.00 0.00 3.51
204 205 0.953960 GTCCCAGTCGAAAACGCCAT 60.954 55.000 0.00 0.00 0.00 4.40
205 206 1.595929 GTCCCAGTCGAAAACGCCA 60.596 57.895 0.00 0.00 0.00 5.69
206 207 2.322830 GGTCCCAGTCGAAAACGCC 61.323 63.158 0.00 0.00 0.00 5.68
207 208 2.322830 GGGTCCCAGTCGAAAACGC 61.323 63.158 1.78 0.00 0.00 4.84
208 209 1.670083 GGGGTCCCAGTCGAAAACG 60.670 63.158 10.98 0.00 35.81 3.60
209 210 0.109913 AAGGGGTCCCAGTCGAAAAC 59.890 55.000 10.98 0.00 38.92 2.43
210 211 0.399075 GAAGGGGTCCCAGTCGAAAA 59.601 55.000 10.98 0.00 38.92 2.29
211 212 1.823169 CGAAGGGGTCCCAGTCGAAA 61.823 60.000 22.18 0.00 43.82 3.46
212 213 2.280552 CGAAGGGGTCCCAGTCGAA 61.281 63.158 22.18 0.00 43.82 3.71
213 214 2.678934 CGAAGGGGTCCCAGTCGA 60.679 66.667 22.18 0.00 43.82 4.20
214 215 2.995574 ACGAAGGGGTCCCAGTCG 60.996 66.667 24.01 24.01 45.38 4.18
215 216 1.477685 TTGACGAAGGGGTCCCAGTC 61.478 60.000 10.98 13.22 38.92 3.51
216 217 0.840722 ATTGACGAAGGGGTCCCAGT 60.841 55.000 10.98 3.66 38.92 4.00
217 218 0.107654 GATTGACGAAGGGGTCCCAG 60.108 60.000 10.98 0.08 38.92 4.45
218 219 0.546747 AGATTGACGAAGGGGTCCCA 60.547 55.000 10.98 0.00 38.92 4.37
219 220 0.107654 CAGATTGACGAAGGGGTCCC 60.108 60.000 0.00 0.00 36.07 4.46
220 221 0.902531 TCAGATTGACGAAGGGGTCC 59.097 55.000 0.00 0.00 36.07 4.46
221 222 2.011540 GTCAGATTGACGAAGGGGTC 57.988 55.000 0.00 0.00 37.67 4.46
230 231 0.608640 ACCCTCCACGTCAGATTGAC 59.391 55.000 0.00 0.00 43.65 3.18
231 232 0.608130 CACCCTCCACGTCAGATTGA 59.392 55.000 0.00 0.00 0.00 2.57
232 233 1.021390 GCACCCTCCACGTCAGATTG 61.021 60.000 0.00 0.00 0.00 2.67
233 234 1.296715 GCACCCTCCACGTCAGATT 59.703 57.895 0.00 0.00 0.00 2.40
234 235 2.982130 GCACCCTCCACGTCAGAT 59.018 61.111 0.00 0.00 0.00 2.90
235 236 3.680786 CGCACCCTCCACGTCAGA 61.681 66.667 0.00 0.00 0.00 3.27
261 262 2.080336 AATATGGGACGGGCATGGGG 62.080 60.000 0.00 0.00 0.00 4.96
262 263 0.178964 AAATATGGGACGGGCATGGG 60.179 55.000 0.00 0.00 0.00 4.00
263 264 2.436417 CTAAATATGGGACGGGCATGG 58.564 52.381 0.00 0.00 0.00 3.66
264 265 2.436417 CCTAAATATGGGACGGGCATG 58.564 52.381 0.00 0.00 0.00 4.06
265 266 1.271926 GCCTAAATATGGGACGGGCAT 60.272 52.381 0.00 0.00 38.16 4.40
266 267 0.109723 GCCTAAATATGGGACGGGCA 59.890 55.000 0.00 0.00 38.16 5.36
267 268 0.400594 AGCCTAAATATGGGACGGGC 59.599 55.000 0.00 0.00 38.50 6.13
268 269 1.271379 CCAGCCTAAATATGGGACGGG 60.271 57.143 0.00 0.00 0.00 5.28
269 270 1.697432 TCCAGCCTAAATATGGGACGG 59.303 52.381 0.00 0.00 34.71 4.79
270 271 3.703001 ATCCAGCCTAAATATGGGACG 57.297 47.619 0.00 0.00 34.71 4.79
271 272 7.127339 TCCTTATATCCAGCCTAAATATGGGAC 59.873 40.741 0.00 0.00 34.71 4.46
272 273 7.203361 TCCTTATATCCAGCCTAAATATGGGA 58.797 38.462 0.00 0.00 34.71 4.37
273 274 7.127955 ACTCCTTATATCCAGCCTAAATATGGG 59.872 40.741 0.00 0.00 34.71 4.00
274 275 8.095452 ACTCCTTATATCCAGCCTAAATATGG 57.905 38.462 0.00 0.00 35.30 2.74
275 276 9.606631 GAACTCCTTATATCCAGCCTAAATATG 57.393 37.037 0.00 0.00 0.00 1.78
276 277 8.773216 GGAACTCCTTATATCCAGCCTAAATAT 58.227 37.037 0.00 0.00 32.08 1.28
277 278 7.093465 CGGAACTCCTTATATCCAGCCTAAATA 60.093 40.741 0.00 0.00 32.08 1.40
278 279 6.295916 CGGAACTCCTTATATCCAGCCTAAAT 60.296 42.308 0.00 0.00 32.08 1.40
279 280 5.011738 CGGAACTCCTTATATCCAGCCTAAA 59.988 44.000 0.00 0.00 32.08 1.85
280 281 4.527038 CGGAACTCCTTATATCCAGCCTAA 59.473 45.833 0.00 0.00 32.08 2.69
281 282 4.087182 CGGAACTCCTTATATCCAGCCTA 58.913 47.826 0.00 0.00 32.08 3.93
282 283 2.900546 CGGAACTCCTTATATCCAGCCT 59.099 50.000 0.00 0.00 32.08 4.58
283 284 2.028020 CCGGAACTCCTTATATCCAGCC 60.028 54.545 0.00 0.00 32.08 4.85
284 285 2.613223 GCCGGAACTCCTTATATCCAGC 60.613 54.545 5.05 0.00 32.08 4.85
285 286 2.028020 GGCCGGAACTCCTTATATCCAG 60.028 54.545 5.05 0.00 32.08 3.86
286 287 1.975680 GGCCGGAACTCCTTATATCCA 59.024 52.381 5.05 0.00 32.08 3.41
287 288 1.975680 TGGCCGGAACTCCTTATATCC 59.024 52.381 5.05 0.00 0.00 2.59
288 289 2.613223 GCTGGCCGGAACTCCTTATATC 60.613 54.545 18.31 0.00 0.00 1.63
289 290 1.348036 GCTGGCCGGAACTCCTTATAT 59.652 52.381 18.31 0.00 0.00 0.86
290 291 0.756903 GCTGGCCGGAACTCCTTATA 59.243 55.000 18.31 0.00 0.00 0.98
291 292 1.527370 GCTGGCCGGAACTCCTTAT 59.473 57.895 18.31 0.00 0.00 1.73
292 293 2.666098 GGCTGGCCGGAACTCCTTA 61.666 63.158 18.31 0.00 0.00 2.69
293 294 4.035102 GGCTGGCCGGAACTCCTT 62.035 66.667 18.31 0.00 0.00 3.36
358 359 0.393077 CCTACAACCCGCCTCATAGG 59.607 60.000 0.00 0.00 38.80 2.57
359 360 0.393077 CCCTACAACCCGCCTCATAG 59.607 60.000 0.00 0.00 0.00 2.23
360 361 1.692173 GCCCTACAACCCGCCTCATA 61.692 60.000 0.00 0.00 0.00 2.15
361 362 3.043999 GCCCTACAACCCGCCTCAT 62.044 63.158 0.00 0.00 0.00 2.90
362 363 3.712907 GCCCTACAACCCGCCTCA 61.713 66.667 0.00 0.00 0.00 3.86
363 364 3.400054 AGCCCTACAACCCGCCTC 61.400 66.667 0.00 0.00 0.00 4.70
364 365 3.717294 CAGCCCTACAACCCGCCT 61.717 66.667 0.00 0.00 0.00 5.52
365 366 2.552231 AATCAGCCCTACAACCCGCC 62.552 60.000 0.00 0.00 0.00 6.13
366 367 0.179468 TAATCAGCCCTACAACCCGC 59.821 55.000 0.00 0.00 0.00 6.13
367 368 1.805120 CGTAATCAGCCCTACAACCCG 60.805 57.143 0.00 0.00 0.00 5.28
368 369 1.949465 CGTAATCAGCCCTACAACCC 58.051 55.000 0.00 0.00 0.00 4.11
392 393 3.656559 TGCTCGGTTACTCTAAACAACC 58.343 45.455 0.00 0.00 38.68 3.77
397 398 7.227910 AGTGAAAATTTGCTCGGTTACTCTAAA 59.772 33.333 0.00 0.00 0.00 1.85
411 412 8.003784 CGTTAATGGAGAAAAGTGAAAATTTGC 58.996 33.333 0.00 0.00 32.69 3.68
418 419 5.127491 ACACCGTTAATGGAGAAAAGTGAA 58.873 37.500 20.84 0.00 0.00 3.18
422 423 6.400727 CGAGTTACACCGTTAATGGAGAAAAG 60.401 42.308 20.84 5.36 0.00 2.27
449 461 0.522705 TAACGCAAACGCAAACGCAA 60.523 45.000 0.00 0.00 45.53 4.85
450 462 1.062047 TAACGCAAACGCAAACGCA 59.938 47.368 0.00 0.00 45.53 5.24
451 463 1.475394 GTAACGCAAACGCAAACGC 59.525 52.632 0.00 0.00 45.53 4.84
452 464 0.316360 AGGTAACGCAAACGCAAACG 60.316 50.000 0.00 0.00 45.53 3.60
453 465 1.776897 GAAGGTAACGCAAACGCAAAC 59.223 47.619 0.00 0.00 45.53 2.93
497 519 0.989890 GAAAGACGCGCAGATTACGT 59.010 50.000 5.73 0.00 43.83 3.57
499 521 3.692576 TCTAGAAAGACGCGCAGATTAC 58.307 45.455 5.73 0.00 0.00 1.89
507 529 3.473093 TGTCTTCTCTAGAAAGACGCG 57.527 47.619 25.71 3.53 36.20 6.01
636 670 2.811855 CGCCCGTGTGTGTGTATTATA 58.188 47.619 0.00 0.00 0.00 0.98
637 671 1.647346 CGCCCGTGTGTGTGTATTAT 58.353 50.000 0.00 0.00 0.00 1.28
638 672 1.015085 GCGCCCGTGTGTGTGTATTA 61.015 55.000 0.00 0.00 0.00 0.98
639 673 2.322081 GCGCCCGTGTGTGTGTATT 61.322 57.895 0.00 0.00 0.00 1.89
824 877 1.229177 TGTGTAGCCTCAGCCCTCA 60.229 57.895 0.00 0.00 41.25 3.86
825 878 1.219393 GTGTGTAGCCTCAGCCCTC 59.781 63.158 0.00 0.00 41.25 4.30
827 880 2.269241 GGTGTGTAGCCTCAGCCC 59.731 66.667 0.00 0.00 41.25 5.19
828 881 2.125512 CGGTGTGTAGCCTCAGCC 60.126 66.667 0.00 0.00 41.25 4.85
829 882 1.446272 GTCGGTGTGTAGCCTCAGC 60.446 63.158 0.00 0.00 40.32 4.26
830 883 0.109086 CTGTCGGTGTGTAGCCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
959 1056 3.121328 GCGTGCATTTATAGCGAGTACTG 60.121 47.826 0.00 0.00 33.85 2.74
960 1057 3.050619 GCGTGCATTTATAGCGAGTACT 58.949 45.455 0.00 0.00 33.85 2.73
961 1058 2.792674 TGCGTGCATTTATAGCGAGTAC 59.207 45.455 0.00 0.00 33.85 2.73
1058 1676 1.625818 GAGGAAGAACAGGAAGCTGGA 59.374 52.381 0.00 0.00 0.00 3.86
1069 1689 4.623002 AGACAACGAAGAAGAGGAAGAAC 58.377 43.478 0.00 0.00 0.00 3.01
1087 1715 7.094162 ACAGAATGAGATACGAAGAAGAAGACA 60.094 37.037 0.00 0.00 39.69 3.41
1120 1763 2.471818 CATCTGATTCAGCACGGAGAG 58.528 52.381 8.89 0.00 0.00 3.20
1149 1792 4.994471 TGCCTGGCTCACAGCACG 62.994 66.667 21.03 0.00 44.75 5.34
1204 1857 4.217497 GACCGAACGATAATAAGGACTCG 58.783 47.826 0.00 0.00 37.17 4.18
1227 1886 2.906458 CCTCCTCGCCTTCTGCAT 59.094 61.111 0.00 0.00 41.33 3.96
1393 4117 3.272364 ATCGCCTGCTTCTTGGGCA 62.272 57.895 0.00 0.00 45.50 5.36
1580 4367 6.375377 TCCAAGCACACGACAAAAATATAAC 58.625 36.000 0.00 0.00 0.00 1.89
1582 4369 5.391523 GCTCCAAGCACACGACAAAAATATA 60.392 40.000 0.00 0.00 41.89 0.86
1599 4400 1.067000 CAGAGTCCAGTCAGCTCCAAG 60.067 57.143 0.00 0.00 0.00 3.61
1742 4554 5.355596 CAACAGAAAGGGCAAATAAACACA 58.644 37.500 0.00 0.00 0.00 3.72
1918 8131 0.239082 CAAGAAAGCGCATGCACTCA 59.761 50.000 19.57 0.00 46.23 3.41
1947 8160 1.443322 GGAGGGAGTACTACCGTCGC 61.443 65.000 18.87 9.34 41.43 5.19
1956 8169 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
1957 8170 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1961 8174 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
1969 8182 9.703892 TGGTATTTTGATGACAAGTATTTTTGG 57.296 29.630 0.00 0.00 37.32 3.28
2002 8215 9.866655 AAAATGGATGTATCTAGCTTTTATCCA 57.133 29.630 13.94 13.94 44.53 3.41
2007 8220 9.412460 TCATCAAAATGGATGTATCTAGCTTTT 57.588 29.630 0.00 0.00 44.00 2.27
2009 8222 7.994911 TGTCATCAAAATGGATGTATCTAGCTT 59.005 33.333 0.00 0.00 44.00 3.74
2010 8223 7.512130 TGTCATCAAAATGGATGTATCTAGCT 58.488 34.615 0.00 0.00 44.00 3.32
2011 8224 7.734924 TGTCATCAAAATGGATGTATCTAGC 57.265 36.000 0.00 0.00 44.00 3.42
2012 8225 9.334947 ACTTGTCATCAAAATGGATGTATCTAG 57.665 33.333 0.00 0.00 44.00 2.43
2044 8282 2.063979 CATGTACTCCCTCCGGCCA 61.064 63.158 2.24 0.00 0.00 5.36
2047 8285 0.469331 TAGCCATGTACTCCCTCCGG 60.469 60.000 0.00 0.00 0.00 5.14
2084 8322 9.695526 AATGTTACTACGAATGTTAGTTACACA 57.304 29.630 4.69 0.49 40.19 3.72
2091 8329 9.916397 GATTCCAAATGTTACTACGAATGTTAG 57.084 33.333 0.00 0.00 0.00 2.34
2112 8350 6.834168 TTACACAAAATGAAGAGGGATTCC 57.166 37.500 0.00 0.00 0.00 3.01
2153 8391 2.494059 ACAAACGCACTAGAAGCACAT 58.506 42.857 0.00 0.00 0.00 3.21
2160 8398 1.202592 TCAGGCAACAAACGCACTAGA 60.203 47.619 0.00 0.00 41.41 2.43
2161 8399 1.225855 TCAGGCAACAAACGCACTAG 58.774 50.000 0.00 0.00 41.41 2.57
2193 8431 3.921677 ACTGCTTGCAGATCAAAATTGG 58.078 40.909 26.71 0.00 33.65 3.16
2204 8443 1.205417 CCCCCAATAAACTGCTTGCAG 59.795 52.381 19.62 19.62 0.00 4.41
2240 8480 0.391661 TCAGTTGCCATCTCCGAAGC 60.392 55.000 0.00 0.00 0.00 3.86
2245 8485 2.362397 TCGTCTATCAGTTGCCATCTCC 59.638 50.000 0.00 0.00 0.00 3.71
2268 8517 0.895100 AGAACGGTGGGCTGTACGTA 60.895 55.000 0.00 0.00 38.79 3.57
2293 8551 1.134461 ACTGCTCCTCATGCTCATCAC 60.134 52.381 0.00 0.00 0.00 3.06
2294 8552 1.201424 ACTGCTCCTCATGCTCATCA 58.799 50.000 0.00 0.00 0.00 3.07
2296 8554 1.472904 CGAACTGCTCCTCATGCTCAT 60.473 52.381 0.00 0.00 0.00 2.90
2323 8588 1.662629 CAGACCTCGCAGCAACTATTG 59.337 52.381 0.00 0.00 0.00 1.90
2324 8589 1.406069 CCAGACCTCGCAGCAACTATT 60.406 52.381 0.00 0.00 0.00 1.73
2325 8590 0.176680 CCAGACCTCGCAGCAACTAT 59.823 55.000 0.00 0.00 0.00 2.12
2326 8591 1.185618 ACCAGACCTCGCAGCAACTA 61.186 55.000 0.00 0.00 0.00 2.24
2327 8592 2.345244 CCAGACCTCGCAGCAACT 59.655 61.111 0.00 0.00 0.00 3.16
2328 8593 2.031163 ACCAGACCTCGCAGCAAC 59.969 61.111 0.00 0.00 0.00 4.17
2329 8594 2.031012 CACCAGACCTCGCAGCAA 59.969 61.111 0.00 0.00 0.00 3.91
2330 8595 2.440385 CTTCACCAGACCTCGCAGCA 62.440 60.000 0.00 0.00 0.00 4.41
2335 8600 1.079543 CCAGCTTCACCAGACCTCG 60.080 63.158 0.00 0.00 0.00 4.63
2338 8603 1.968540 GCACCAGCTTCACCAGACC 60.969 63.158 0.00 0.00 37.91 3.85
2349 8614 0.799534 GAATCAATGCGTGCACCAGC 60.800 55.000 12.15 10.66 42.57 4.85
2355 8620 0.524816 CTGCCAGAATCAATGCGTGC 60.525 55.000 0.00 0.00 0.00 5.34
2369 8634 1.255882 CAACTATTGCCCAACTGCCA 58.744 50.000 0.00 0.00 0.00 4.92
2421 8686 1.300465 CTGCGACAGTGTGTCTGCT 60.300 57.895 0.00 0.00 44.85 4.24
2440 8705 1.920574 CGAGTTGAATGACACGGCTAG 59.079 52.381 0.00 0.00 31.41 3.42
2441 8706 1.542472 TCGAGTTGAATGACACGGCTA 59.458 47.619 0.00 0.00 34.95 3.93
2464 8729 1.416030 TGTGTATGTGTGTGGCTGACT 59.584 47.619 0.00 0.00 0.00 3.41
2466 8731 1.139853 TGTGTGTATGTGTGTGGCTGA 59.860 47.619 0.00 0.00 0.00 4.26
2469 8734 0.591170 GGTGTGTGTATGTGTGTGGC 59.409 55.000 0.00 0.00 0.00 5.01
2470 8735 0.865111 CGGTGTGTGTATGTGTGTGG 59.135 55.000 0.00 0.00 0.00 4.17
2479 8749 2.355363 GCTGCGACGGTGTGTGTA 60.355 61.111 0.00 0.00 0.00 2.90
2503 8773 0.103208 CTCACTATCTGCGGTGGACC 59.897 60.000 0.00 0.00 34.57 4.46
2515 8785 4.161565 TGCCGAAATGGTTACTCTCACTAT 59.838 41.667 0.00 0.00 41.21 2.12
2516 8786 3.512329 TGCCGAAATGGTTACTCTCACTA 59.488 43.478 0.00 0.00 41.21 2.74
2543 8821 1.745232 TTATGTACGCCCAAAGCAGG 58.255 50.000 0.00 0.00 44.04 4.85
2551 8829 1.792949 CTGCTCGATTTATGTACGCCC 59.207 52.381 0.00 0.00 0.00 6.13
2555 8833 2.143925 GGCCCTGCTCGATTTATGTAC 58.856 52.381 0.00 0.00 0.00 2.90
2582 8860 0.883833 AGTCGTCGTACGGATTGGTT 59.116 50.000 16.52 0.00 42.81 3.67
2585 8863 1.811428 CTCAGTCGTCGTACGGATTG 58.189 55.000 16.52 12.40 42.81 2.67
2620 8899 1.669115 CACAGCCACAGGTCTTCGG 60.669 63.158 0.00 0.00 0.00 4.30
2717 9311 3.315749 GCACCTAGCAACTCGTAGTAGAT 59.684 47.826 0.00 0.00 44.79 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.