Multiple sequence alignment - TraesCS5B01G288600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G288600 chr5B 100.000 3309 0 0 1 3309 473873731 473870423 0.000000e+00 6111.0
1 TraesCS5B01G288600 chr5B 95.455 44 2 0 3130 3173 588928996 588929039 1.650000e-08 71.3
2 TraesCS5B01G288600 chr5D 91.976 1857 85 29 495 2316 393995953 393994126 0.000000e+00 2545.0
3 TraesCS5B01G288600 chr5D 91.568 925 57 11 2398 3304 393994079 393993158 0.000000e+00 1256.0
4 TraesCS5B01G288600 chr5D 75.949 237 18 21 245 461 393996346 393996129 5.880000e-13 86.1
5 TraesCS5B01G288600 chr5A 93.271 966 41 16 1360 2316 496011465 496010515 0.000000e+00 1402.0
6 TraesCS5B01G288600 chr5A 83.254 842 65 29 451 1235 496012394 496011572 0.000000e+00 704.0
7 TraesCS5B01G288600 chr5A 82.746 539 45 28 2394 2899 496010482 496009959 1.410000e-118 436.0
8 TraesCS5B01G288600 chr5A 80.501 359 30 19 124 461 496012881 496012542 4.270000e-59 239.0
9 TraesCS5B01G288600 chr5A 84.043 188 25 5 2891 3076 569539101 569538917 3.390000e-40 176.0
10 TraesCS5B01G288600 chr5A 95.455 44 2 0 3249 3292 578825129 578825086 1.650000e-08 71.3
11 TraesCS5B01G288600 chr7B 82.078 385 59 7 1359 1738 218548777 218548398 1.480000e-83 320.0
12 TraesCS5B01G288600 chr7B 87.586 145 15 3 3079 3223 496336578 496336437 7.350000e-37 165.0
13 TraesCS5B01G288600 chr7A 82.031 384 61 7 1359 1738 254897402 254897781 1.480000e-83 320.0
14 TraesCS5B01G288600 chr7A 81.579 190 27 7 2891 3077 526774888 526775072 2.060000e-32 150.0
15 TraesCS5B01G288600 chr7D 82.031 384 59 8 1359 1737 242784689 242784311 5.330000e-83 318.0
16 TraesCS5B01G288600 chr2B 90.278 144 12 2 3079 3222 747832519 747832660 1.570000e-43 187.0
17 TraesCS5B01G288600 chr1A 84.574 188 26 3 2891 3077 504583474 504583289 2.030000e-42 183.0
18 TraesCS5B01G288600 chr1A 83.957 187 27 3 2891 3076 493321014 493320830 3.390000e-40 176.0
19 TraesCS5B01G288600 chr4D 83.422 187 28 3 2891 3076 502041158 502040974 1.580000e-38 171.0
20 TraesCS5B01G288600 chr4A 83.240 179 27 3 2891 3068 614613498 614613674 9.500000e-36 161.0
21 TraesCS5B01G288600 chr2D 89.744 117 10 2 3079 3194 544567389 544567274 7.400000e-32 148.0
22 TraesCS5B01G288600 chr6A 78.836 189 23 12 2891 3076 571532979 571532805 9.710000e-21 111.0
23 TraesCS5B01G288600 chr6A 76.023 171 32 6 2904 3073 547280479 547280641 2.740000e-11 80.5
24 TraesCS5B01G288600 chr6D 86.517 89 8 4 1390 1476 455251636 455251722 9.780000e-16 95.3
25 TraesCS5B01G288600 chr6D 97.727 44 1 0 3130 3173 100194962 100194919 3.540000e-10 76.8
26 TraesCS5B01G288600 chr2A 97.674 43 1 0 3131 3173 32263566 32263608 1.270000e-09 75.0
27 TraesCS5B01G288600 chr2A 95.556 45 2 0 3129 3173 102679693 102679649 4.580000e-09 73.1
28 TraesCS5B01G288600 chr1B 95.556 45 2 0 3129 3173 357428092 357428048 4.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G288600 chr5B 473870423 473873731 3308 True 6111.00 6111 100.000000 1 3309 1 chr5B.!!$R1 3308
1 TraesCS5B01G288600 chr5D 393993158 393996346 3188 True 1295.70 2545 86.497667 245 3304 3 chr5D.!!$R1 3059
2 TraesCS5B01G288600 chr5A 496009959 496012881 2922 True 695.25 1402 84.943000 124 2899 4 chr5A.!!$R3 2775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.034059 AGTGAACCGGACTTGAGCTG 59.966 55.0 9.46 0.0 0.00 4.24 F
74 75 0.109532 TGAACGGACCCAAAGATGCA 59.890 50.0 0.00 0.0 0.00 3.96 F
79 80 0.176449 GGACCCAAAGATGCAATGGC 59.824 55.0 0.00 0.0 41.68 4.40 F
341 351 0.179076 TTGGCGATCGATGACAGCAT 60.179 50.0 21.57 0.0 37.47 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1102 1350 0.439600 GTTTGGAAATGCATGCACGC 59.560 50.000 25.37 14.86 0.00 5.34 R
1350 1605 0.745128 AACGTCGGCCTGTTCAAACA 60.745 50.000 0.00 0.00 37.37 2.83 R
2008 2312 1.135228 ACGCGTGCACATACATGAGTA 60.135 47.619 12.93 0.00 37.74 2.59 R
2329 2649 1.018752 TAGCTCCACGCACGTACGTA 61.019 55.000 22.34 3.04 46.34 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.874297 AATGTATCATGCATCAAAACGTTG 57.126 33.333 0.00 0.00 35.95 4.10
24 25 5.369685 TGTATCATGCATCAAAACGTTGT 57.630 34.783 0.00 0.00 36.07 3.32
25 26 6.487689 TGTATCATGCATCAAAACGTTGTA 57.512 33.333 0.00 0.00 36.07 2.41
26 27 6.541969 TGTATCATGCATCAAAACGTTGTAG 58.458 36.000 0.00 0.00 36.07 2.74
27 28 3.820689 TCATGCATCAAAACGTTGTAGC 58.179 40.909 0.00 1.97 36.07 3.58
28 29 3.501828 TCATGCATCAAAACGTTGTAGCT 59.498 39.130 0.00 0.00 36.90 3.32
29 30 4.693095 TCATGCATCAAAACGTTGTAGCTA 59.307 37.500 0.00 0.00 36.90 3.32
30 31 4.661993 TGCATCAAAACGTTGTAGCTAG 57.338 40.909 0.00 0.00 36.90 3.42
31 32 4.062293 TGCATCAAAACGTTGTAGCTAGT 58.938 39.130 0.00 0.00 36.90 2.57
32 33 4.084066 TGCATCAAAACGTTGTAGCTAGTG 60.084 41.667 0.00 0.00 36.90 2.74
33 34 4.151689 GCATCAAAACGTTGTAGCTAGTGA 59.848 41.667 0.00 0.00 36.07 3.41
34 35 5.333798 GCATCAAAACGTTGTAGCTAGTGAA 60.334 40.000 0.00 0.00 36.07 3.18
35 36 5.646467 TCAAAACGTTGTAGCTAGTGAAC 57.354 39.130 0.00 0.00 36.07 3.18
36 37 4.508861 TCAAAACGTTGTAGCTAGTGAACC 59.491 41.667 0.00 0.00 36.07 3.62
37 38 2.342910 ACGTTGTAGCTAGTGAACCG 57.657 50.000 0.00 0.00 0.00 4.44
38 39 1.068055 ACGTTGTAGCTAGTGAACCGG 60.068 52.381 0.00 0.00 0.00 5.28
39 40 1.200716 CGTTGTAGCTAGTGAACCGGA 59.799 52.381 9.46 0.00 0.00 5.14
40 41 2.603953 GTTGTAGCTAGTGAACCGGAC 58.396 52.381 9.46 1.77 0.00 4.79
41 42 2.211250 TGTAGCTAGTGAACCGGACT 57.789 50.000 9.46 3.41 0.00 3.85
42 43 2.522185 TGTAGCTAGTGAACCGGACTT 58.478 47.619 9.46 0.00 0.00 3.01
43 44 2.230508 TGTAGCTAGTGAACCGGACTTG 59.769 50.000 9.46 3.33 0.00 3.16
44 45 1.629043 AGCTAGTGAACCGGACTTGA 58.371 50.000 9.46 0.00 0.00 3.02
45 46 1.546476 AGCTAGTGAACCGGACTTGAG 59.454 52.381 9.46 0.00 0.00 3.02
46 47 1.997669 CTAGTGAACCGGACTTGAGC 58.002 55.000 9.46 0.00 0.00 4.26
47 48 1.546476 CTAGTGAACCGGACTTGAGCT 59.454 52.381 9.46 0.00 0.00 4.09
48 49 0.034059 AGTGAACCGGACTTGAGCTG 59.966 55.000 9.46 0.00 0.00 4.24
49 50 0.249911 GTGAACCGGACTTGAGCTGT 60.250 55.000 9.46 0.00 0.00 4.40
50 51 0.249868 TGAACCGGACTTGAGCTGTG 60.250 55.000 9.46 0.00 0.00 3.66
51 52 1.569479 GAACCGGACTTGAGCTGTGC 61.569 60.000 9.46 0.00 0.00 4.57
52 53 2.031012 CCGGACTTGAGCTGTGCA 59.969 61.111 0.00 0.00 0.00 4.57
53 54 1.597854 CCGGACTTGAGCTGTGCAA 60.598 57.895 0.00 0.00 0.00 4.08
54 55 1.571460 CGGACTTGAGCTGTGCAAC 59.429 57.895 0.00 0.00 37.35 4.17
55 56 0.882042 CGGACTTGAGCTGTGCAACT 60.882 55.000 0.00 0.00 38.04 3.16
56 57 0.590195 GGACTTGAGCTGTGCAACTG 59.410 55.000 0.00 0.00 38.04 3.16
57 58 1.586422 GACTTGAGCTGTGCAACTGA 58.414 50.000 0.00 0.00 38.12 3.41
58 59 1.942657 GACTTGAGCTGTGCAACTGAA 59.057 47.619 0.00 0.00 38.12 3.02
59 60 1.672881 ACTTGAGCTGTGCAACTGAAC 59.327 47.619 0.00 0.00 38.12 3.18
60 61 0.657312 TTGAGCTGTGCAACTGAACG 59.343 50.000 0.00 0.00 38.12 3.95
61 62 1.159713 TGAGCTGTGCAACTGAACGG 61.160 55.000 0.00 0.00 38.12 4.44
62 63 0.880278 GAGCTGTGCAACTGAACGGA 60.880 55.000 0.42 0.00 38.12 4.69
63 64 1.160329 AGCTGTGCAACTGAACGGAC 61.160 55.000 0.42 0.00 38.12 4.79
64 65 1.941812 CTGTGCAACTGAACGGACC 59.058 57.895 0.00 0.00 38.12 4.46
65 66 1.507141 CTGTGCAACTGAACGGACCC 61.507 60.000 0.00 0.00 38.12 4.46
66 67 1.525077 GTGCAACTGAACGGACCCA 60.525 57.895 0.00 0.00 0.00 4.51
67 68 1.098712 GTGCAACTGAACGGACCCAA 61.099 55.000 0.00 0.00 0.00 4.12
68 69 0.394488 TGCAACTGAACGGACCCAAA 60.394 50.000 0.00 0.00 0.00 3.28
69 70 0.310854 GCAACTGAACGGACCCAAAG 59.689 55.000 0.00 0.00 0.00 2.77
70 71 1.961793 CAACTGAACGGACCCAAAGA 58.038 50.000 0.00 0.00 0.00 2.52
71 72 2.504367 CAACTGAACGGACCCAAAGAT 58.496 47.619 0.00 0.00 0.00 2.40
72 73 2.185004 ACTGAACGGACCCAAAGATG 57.815 50.000 0.00 0.00 0.00 2.90
73 74 0.804989 CTGAACGGACCCAAAGATGC 59.195 55.000 0.00 0.00 0.00 3.91
74 75 0.109532 TGAACGGACCCAAAGATGCA 59.890 50.000 0.00 0.00 0.00 3.96
75 76 1.243902 GAACGGACCCAAAGATGCAA 58.756 50.000 0.00 0.00 0.00 4.08
76 77 1.818674 GAACGGACCCAAAGATGCAAT 59.181 47.619 0.00 0.00 0.00 3.56
77 78 1.176527 ACGGACCCAAAGATGCAATG 58.823 50.000 0.00 0.00 0.00 2.82
78 79 0.457035 CGGACCCAAAGATGCAATGG 59.543 55.000 0.00 0.00 0.00 3.16
79 80 0.176449 GGACCCAAAGATGCAATGGC 59.824 55.000 0.00 0.00 41.68 4.40
80 81 1.188863 GACCCAAAGATGCAATGGCT 58.811 50.000 0.00 0.00 41.91 4.75
81 82 2.378038 GACCCAAAGATGCAATGGCTA 58.622 47.619 0.00 0.00 41.91 3.93
82 83 2.360165 GACCCAAAGATGCAATGGCTAG 59.640 50.000 0.00 0.00 41.91 3.42
83 84 1.068127 CCCAAAGATGCAATGGCTAGC 59.932 52.381 6.04 6.04 41.91 3.42
84 85 2.029623 CCAAAGATGCAATGGCTAGCT 58.970 47.619 15.72 0.00 41.91 3.32
85 86 2.429610 CCAAAGATGCAATGGCTAGCTT 59.570 45.455 15.72 0.00 41.91 3.74
86 87 3.633525 CCAAAGATGCAATGGCTAGCTTA 59.366 43.478 15.72 4.59 41.91 3.09
87 88 4.098349 CCAAAGATGCAATGGCTAGCTTAA 59.902 41.667 15.72 0.90 41.91 1.85
88 89 5.221382 CCAAAGATGCAATGGCTAGCTTAAT 60.221 40.000 15.72 3.48 41.91 1.40
89 90 6.278363 CAAAGATGCAATGGCTAGCTTAATT 58.722 36.000 15.72 9.56 41.91 1.40
90 91 7.428020 CAAAGATGCAATGGCTAGCTTAATTA 58.572 34.615 15.72 0.00 41.91 1.40
91 92 6.814506 AGATGCAATGGCTAGCTTAATTAG 57.185 37.500 15.72 8.43 41.91 1.73
92 93 4.836125 TGCAATGGCTAGCTTAATTAGC 57.164 40.909 15.72 16.05 45.29 3.09
103 104 4.536364 GCTTAATTAGCTGCATCGTTGA 57.464 40.909 1.02 0.00 46.77 3.18
104 105 4.521943 GCTTAATTAGCTGCATCGTTGAG 58.478 43.478 1.02 0.00 46.77 3.02
105 106 4.034510 GCTTAATTAGCTGCATCGTTGAGT 59.965 41.667 1.02 0.00 46.77 3.41
106 107 5.469373 TTAATTAGCTGCATCGTTGAGTG 57.531 39.130 1.02 0.00 0.00 3.51
107 108 1.078709 TTAGCTGCATCGTTGAGTGC 58.921 50.000 1.02 0.00 41.61 4.40
108 109 0.247460 TAGCTGCATCGTTGAGTGCT 59.753 50.000 1.02 5.75 41.78 4.40
109 110 1.134075 GCTGCATCGTTGAGTGCTG 59.866 57.895 0.00 0.00 41.78 4.41
110 111 1.792301 CTGCATCGTTGAGTGCTGG 59.208 57.895 0.00 0.00 41.78 4.85
111 112 1.642037 CTGCATCGTTGAGTGCTGGG 61.642 60.000 0.00 0.00 41.78 4.45
112 113 3.044059 GCATCGTTGAGTGCTGGGC 62.044 63.158 0.00 0.00 38.30 5.36
113 114 1.376424 CATCGTTGAGTGCTGGGCT 60.376 57.895 0.00 0.00 0.00 5.19
114 115 1.376424 ATCGTTGAGTGCTGGGCTG 60.376 57.895 0.00 0.00 0.00 4.85
115 116 2.809861 ATCGTTGAGTGCTGGGCTGG 62.810 60.000 0.00 0.00 0.00 4.85
116 117 2.674380 GTTGAGTGCTGGGCTGGG 60.674 66.667 0.00 0.00 0.00 4.45
117 118 3.177884 TTGAGTGCTGGGCTGGGT 61.178 61.111 0.00 0.00 0.00 4.51
118 119 3.496309 TTGAGTGCTGGGCTGGGTG 62.496 63.158 0.00 0.00 0.00 4.61
119 120 3.958860 GAGTGCTGGGCTGGGTGT 61.959 66.667 0.00 0.00 0.00 4.16
120 121 4.275508 AGTGCTGGGCTGGGTGTG 62.276 66.667 0.00 0.00 0.00 3.82
121 122 4.269523 GTGCTGGGCTGGGTGTGA 62.270 66.667 0.00 0.00 0.00 3.58
122 123 4.269523 TGCTGGGCTGGGTGTGAC 62.270 66.667 0.00 0.00 0.00 3.67
140 141 0.740149 ACTGTGACGTGTCGGTTGTA 59.260 50.000 0.00 0.00 0.00 2.41
145 146 1.952990 TGACGTGTCGGTTGTAAGGTA 59.047 47.619 0.00 0.00 0.00 3.08
178 184 2.225491 CGCATTGACCGGAAGAGAAAAA 59.775 45.455 9.46 0.00 0.00 1.94
186 192 4.589908 ACCGGAAGAGAAAAATGCATAGT 58.410 39.130 9.46 0.00 0.00 2.12
191 197 5.882557 GGAAGAGAAAAATGCATAGTCCTCA 59.117 40.000 0.00 0.00 0.00 3.86
233 239 2.346803 TCGCTGCAAGTTTTAGCTAGG 58.653 47.619 0.00 0.00 35.36 3.02
288 294 4.158949 TGCATGCAAGCACATATCTTTTCT 59.841 37.500 20.30 0.00 40.11 2.52
289 295 5.107133 GCATGCAAGCACATATCTTTTCTT 58.893 37.500 14.21 0.00 0.00 2.52
290 296 5.579511 GCATGCAAGCACATATCTTTTCTTT 59.420 36.000 14.21 0.00 0.00 2.52
291 297 6.237755 GCATGCAAGCACATATCTTTTCTTTC 60.238 38.462 14.21 0.00 0.00 2.62
292 298 6.330004 TGCAAGCACATATCTTTTCTTTCA 57.670 33.333 0.00 0.00 0.00 2.69
293 299 6.384224 TGCAAGCACATATCTTTTCTTTCAG 58.616 36.000 0.00 0.00 0.00 3.02
294 300 6.016024 TGCAAGCACATATCTTTTCTTTCAGT 60.016 34.615 0.00 0.00 0.00 3.41
306 312 3.328382 TCTTTCAGTGGGATACAACGG 57.672 47.619 0.00 0.00 39.74 4.44
309 315 4.468510 TCTTTCAGTGGGATACAACGGTAT 59.531 41.667 0.00 0.00 42.86 2.73
335 345 2.602257 ATCTTGTTGGCGATCGATGA 57.398 45.000 21.57 5.55 0.00 2.92
336 346 1.640428 TCTTGTTGGCGATCGATGAC 58.360 50.000 21.57 13.23 0.00 3.06
337 347 1.067213 TCTTGTTGGCGATCGATGACA 60.067 47.619 21.57 15.71 0.00 3.58
338 348 1.325640 CTTGTTGGCGATCGATGACAG 59.674 52.381 21.57 9.10 0.00 3.51
339 349 1.083806 TGTTGGCGATCGATGACAGC 61.084 55.000 21.57 13.38 0.00 4.40
340 350 1.083806 GTTGGCGATCGATGACAGCA 61.084 55.000 21.57 0.00 0.00 4.41
341 351 0.179076 TTGGCGATCGATGACAGCAT 60.179 50.000 21.57 0.00 37.47 3.79
361 382 1.221414 GTACGGATGCAAGGCTCATC 58.779 55.000 7.48 7.48 39.56 2.92
362 383 1.123077 TACGGATGCAAGGCTCATCT 58.877 50.000 13.87 1.15 40.02 2.90
365 386 1.542767 CGGATGCAAGGCTCATCTCAT 60.543 52.381 13.87 2.38 40.02 2.90
366 387 2.289257 CGGATGCAAGGCTCATCTCATA 60.289 50.000 13.87 0.00 40.02 2.15
367 388 3.072944 GGATGCAAGGCTCATCTCATAC 58.927 50.000 13.87 0.10 40.02 2.39
368 389 2.627515 TGCAAGGCTCATCTCATACC 57.372 50.000 0.00 0.00 0.00 2.73
369 390 1.839354 TGCAAGGCTCATCTCATACCA 59.161 47.619 0.00 0.00 0.00 3.25
370 391 2.158856 TGCAAGGCTCATCTCATACCAG 60.159 50.000 0.00 0.00 0.00 4.00
371 392 2.158842 GCAAGGCTCATCTCATACCAGT 60.159 50.000 0.00 0.00 0.00 4.00
372 393 3.726607 CAAGGCTCATCTCATACCAGTC 58.273 50.000 0.00 0.00 0.00 3.51
373 394 1.959985 AGGCTCATCTCATACCAGTCG 59.040 52.381 0.00 0.00 0.00 4.18
374 395 1.957177 GGCTCATCTCATACCAGTCGA 59.043 52.381 0.00 0.00 0.00 4.20
375 396 2.560542 GGCTCATCTCATACCAGTCGAT 59.439 50.000 0.00 0.00 0.00 3.59
376 397 3.573598 GCTCATCTCATACCAGTCGATG 58.426 50.000 0.00 0.00 34.33 3.84
377 398 3.573598 CTCATCTCATACCAGTCGATGC 58.426 50.000 0.00 0.00 33.35 3.91
378 399 2.030805 TCATCTCATACCAGTCGATGCG 60.031 50.000 0.00 0.00 33.35 4.73
379 400 1.389555 TCTCATACCAGTCGATGCGT 58.610 50.000 0.00 0.00 0.00 5.24
380 401 1.333931 TCTCATACCAGTCGATGCGTC 59.666 52.381 0.00 0.00 0.00 5.19
381 402 1.065551 CTCATACCAGTCGATGCGTCA 59.934 52.381 6.75 0.00 0.00 4.35
410 431 0.991344 GGCATTGTTATTGCACACGC 59.009 50.000 0.00 0.00 41.95 5.34
411 432 1.402720 GGCATTGTTATTGCACACGCT 60.403 47.619 0.00 0.00 41.95 5.07
412 433 2.159448 GGCATTGTTATTGCACACGCTA 60.159 45.455 0.00 0.00 41.95 4.26
419 440 5.157781 TGTTATTGCACACGCTAATTTTCC 58.842 37.500 0.00 0.00 39.64 3.13
420 441 3.932545 ATTGCACACGCTAATTTTCCA 57.067 38.095 0.00 0.00 39.64 3.53
421 442 3.717400 TTGCACACGCTAATTTTCCAA 57.283 38.095 0.00 0.00 39.64 3.53
430 459 8.213812 CACACGCTAATTTTCCAAAAAGTAATG 58.786 33.333 0.00 0.00 0.00 1.90
451 480 4.229096 TGTAACTTCTGTAAAGGCGTACG 58.771 43.478 11.84 11.84 0.00 3.67
461 490 8.601845 TCTGTAAAGGCGTACGTATATACTAA 57.398 34.615 17.90 5.89 0.00 2.24
470 659 9.825972 GGCGTACGTATATACTAAGTTTTATGA 57.174 33.333 17.90 0.00 0.00 2.15
502 691 6.932947 TCTCTTTCTGTTTTACTAGTAGCCC 58.067 40.000 2.23 0.00 0.00 5.19
503 692 6.724905 TCTCTTTCTGTTTTACTAGTAGCCCT 59.275 38.462 2.23 0.00 0.00 5.19
504 693 6.932947 TCTTTCTGTTTTACTAGTAGCCCTC 58.067 40.000 2.23 0.00 0.00 4.30
505 694 6.724905 TCTTTCTGTTTTACTAGTAGCCCTCT 59.275 38.462 2.23 0.00 0.00 3.69
506 695 7.892241 TCTTTCTGTTTTACTAGTAGCCCTCTA 59.108 37.037 2.23 0.00 0.00 2.43
507 696 7.401955 TTCTGTTTTACTAGTAGCCCTCTAC 57.598 40.000 2.23 0.00 44.27 2.59
551 745 8.835467 AATTAATGTACATGCACGTTTGTATC 57.165 30.769 9.63 0.00 31.48 2.24
558 752 4.625742 ACATGCACGTTTGTATCACTACTC 59.374 41.667 0.00 0.00 0.00 2.59
560 754 5.632244 TGCACGTTTGTATCACTACTCTA 57.368 39.130 0.00 0.00 0.00 2.43
594 788 1.817447 GTCCTTGTAGAGGCTACGTGT 59.183 52.381 0.00 0.00 45.87 4.49
625 826 2.104111 TGGTACACAGCAGTATATGGCC 59.896 50.000 0.00 0.00 0.00 5.36
640 842 2.030113 GCCGTAACCGATAGCCCC 59.970 66.667 0.00 0.00 35.63 5.80
641 843 2.739132 CCGTAACCGATAGCCCCC 59.261 66.667 0.00 0.00 35.63 5.40
649 851 0.819666 CCGATAGCCCCCTTTTGCTC 60.820 60.000 0.00 0.00 39.00 4.26
653 855 4.360405 GCCCCCTTTTGCTCCCGA 62.360 66.667 0.00 0.00 0.00 5.14
657 859 1.389555 CCCCTTTTGCTCCCGATAAC 58.610 55.000 0.00 0.00 0.00 1.89
705 907 3.157087 TCTTCATCTTGGCTGGGAAAAC 58.843 45.455 0.00 0.00 0.00 2.43
741 943 3.699038 ATGTTTACATGCATGGTACACCC 59.301 43.478 29.41 11.36 36.61 4.61
797 999 3.826524 TGAATTTTCACCACTGTGGCTA 58.173 40.909 26.20 11.99 42.67 3.93
831 1036 4.847924 CGTACTCGTCGTAGAGCG 57.152 61.111 9.21 3.63 41.77 5.03
832 1037 1.272131 CGTACTCGTCGTAGAGCGG 59.728 63.158 9.21 0.00 41.77 5.52
883 1096 1.674322 ACGGCTTGTTCCCATTCGG 60.674 57.895 0.00 0.00 0.00 4.30
919 1133 1.760029 CTGCCTTCCTTCCCTAGTCTC 59.240 57.143 0.00 0.00 0.00 3.36
942 1182 2.147150 GGAAGGAGAAGAACACACAGC 58.853 52.381 0.00 0.00 0.00 4.40
946 1187 2.139118 GGAGAAGAACACACAGCAGAC 58.861 52.381 0.00 0.00 0.00 3.51
970 1211 5.821470 CACATCCATCTGATCTGCTTAGTTT 59.179 40.000 0.00 0.00 0.00 2.66
971 1212 6.988580 CACATCCATCTGATCTGCTTAGTTTA 59.011 38.462 0.00 0.00 0.00 2.01
972 1213 7.171167 CACATCCATCTGATCTGCTTAGTTTAG 59.829 40.741 0.00 0.00 0.00 1.85
973 1214 6.798427 TCCATCTGATCTGCTTAGTTTAGT 57.202 37.500 0.00 0.00 0.00 2.24
974 1215 7.187824 TCCATCTGATCTGCTTAGTTTAGTT 57.812 36.000 0.00 0.00 0.00 2.24
975 1216 8.306313 TCCATCTGATCTGCTTAGTTTAGTTA 57.694 34.615 0.00 0.00 0.00 2.24
976 1217 8.928448 TCCATCTGATCTGCTTAGTTTAGTTAT 58.072 33.333 0.00 0.00 0.00 1.89
989 1230 6.716898 AGTTTAGTTATCGTGCTTTGTACC 57.283 37.500 0.00 0.00 0.00 3.34
991 1239 2.613691 AGTTATCGTGCTTTGTACCCG 58.386 47.619 0.00 0.00 0.00 5.28
1008 1256 0.395686 CCGTGATCAGGATGGCAGAT 59.604 55.000 16.84 0.00 36.16 2.90
1098 1346 1.239296 TGCATGCTGCTGAGGTGTTC 61.239 55.000 20.33 0.00 45.31 3.18
1099 1347 1.792301 CATGCTGCTGAGGTGTTCG 59.208 57.895 0.00 0.00 0.00 3.95
1100 1348 0.671472 CATGCTGCTGAGGTGTTCGA 60.671 55.000 0.00 0.00 0.00 3.71
1101 1349 0.251354 ATGCTGCTGAGGTGTTCGAT 59.749 50.000 0.00 0.00 0.00 3.59
1102 1350 0.671472 TGCTGCTGAGGTGTTCGATG 60.671 55.000 0.00 0.00 0.00 3.84
1103 1351 1.975363 GCTGCTGAGGTGTTCGATGC 61.975 60.000 0.00 0.00 0.00 3.91
1104 1352 1.690283 CTGCTGAGGTGTTCGATGCG 61.690 60.000 0.00 0.00 0.00 4.73
1111 1365 1.864750 GTGTTCGATGCGTGCATGC 60.865 57.895 24.20 24.20 36.70 4.06
1143 1398 8.489559 CAAACCATTGTTTTGTCACATGATTAG 58.510 33.333 0.00 0.00 41.92 1.73
1177 1432 4.273480 CACAAAGTGTCATTTCTCGTTCCT 59.727 41.667 0.00 0.00 0.00 3.36
1178 1433 4.273480 ACAAAGTGTCATTTCTCGTTCCTG 59.727 41.667 0.00 0.00 0.00 3.86
1179 1434 3.753294 AGTGTCATTTCTCGTTCCTGT 57.247 42.857 0.00 0.00 0.00 4.00
1267 1522 5.565592 TCGAGCACATTAATCTTTTGCAT 57.434 34.783 9.40 0.00 35.57 3.96
1270 1525 4.823157 AGCACATTAATCTTTTGCATGCA 58.177 34.783 18.46 18.46 35.57 3.96
1298 1553 3.004629 TGTTGTGATCACCATGAGTTTGC 59.995 43.478 22.85 0.00 0.00 3.68
1301 1556 3.503363 TGTGATCACCATGAGTTTGCTTC 59.497 43.478 22.85 0.00 0.00 3.86
1303 1558 2.254546 TCACCATGAGTTTGCTTCGT 57.745 45.000 0.00 0.00 0.00 3.85
1353 1608 5.422666 CATGTACACATGTGTTGACTGTT 57.577 39.130 34.66 14.57 46.40 3.16
1355 1610 5.228579 TGTACACATGTGTTGACTGTTTG 57.771 39.130 34.66 3.32 41.83 2.93
1356 1611 4.938226 TGTACACATGTGTTGACTGTTTGA 59.062 37.500 34.66 11.54 41.83 2.69
1629 1920 3.082579 GCCTTCGCCCTCATCGTCT 62.083 63.158 0.00 0.00 0.00 4.18
1641 1932 3.338126 ATCGTCTCCGTCACCGTGC 62.338 63.158 0.00 0.00 35.01 5.34
1749 2043 7.011763 TCAGCGTCATCGTAATTACTACTACTT 59.988 37.037 13.56 0.00 39.49 2.24
1767 2064 7.055667 ACTACTTCTCTTGTTTGAGTGATCA 57.944 36.000 0.00 0.00 35.68 2.92
1768 2065 7.500992 ACTACTTCTCTTGTTTGAGTGATCAA 58.499 34.615 0.00 0.00 35.68 2.57
1769 2066 8.153550 ACTACTTCTCTTGTTTGAGTGATCAAT 58.846 33.333 0.00 0.00 35.68 2.57
1964 2261 1.810030 CCGTACGCCCTGCTTCTTC 60.810 63.158 10.49 0.00 0.00 2.87
1978 2282 4.464008 TGCTTCTTCCACAATCAGTTTCT 58.536 39.130 0.00 0.00 0.00 2.52
1982 2286 5.673337 TCTTCCACAATCAGTTTCTTTCG 57.327 39.130 0.00 0.00 0.00 3.46
1983 2287 5.123227 TCTTCCACAATCAGTTTCTTTCGT 58.877 37.500 0.00 0.00 0.00 3.85
1984 2288 5.236478 TCTTCCACAATCAGTTTCTTTCGTC 59.764 40.000 0.00 0.00 0.00 4.20
1985 2289 3.493129 TCCACAATCAGTTTCTTTCGTCG 59.507 43.478 0.00 0.00 0.00 5.12
1986 2290 3.218398 CACAATCAGTTTCTTTCGTCGC 58.782 45.455 0.00 0.00 0.00 5.19
1987 2291 2.869801 ACAATCAGTTTCTTTCGTCGCA 59.130 40.909 0.00 0.00 0.00 5.10
1988 2292 3.311322 ACAATCAGTTTCTTTCGTCGCAA 59.689 39.130 0.00 0.00 0.00 4.85
1989 2293 4.201871 ACAATCAGTTTCTTTCGTCGCAAA 60.202 37.500 0.00 0.00 0.00 3.68
1995 2299 5.115021 CAGTTTCTTTCGTCGCAAATTAACC 59.885 40.000 0.00 0.00 0.00 2.85
1999 2303 3.750639 TTCGTCGCAAATTAACCATCC 57.249 42.857 0.00 0.00 0.00 3.51
2005 2309 3.631686 TCGCAAATTAACCATCCATCCAG 59.368 43.478 0.00 0.00 0.00 3.86
2007 2311 3.706086 GCAAATTAACCATCCATCCAGGT 59.294 43.478 0.00 0.00 39.02 4.00
2008 2312 4.162131 GCAAATTAACCATCCATCCAGGTT 59.838 41.667 0.00 0.00 46.64 3.50
2014 2318 3.397527 ACCATCCATCCAGGTTACTCAT 58.602 45.455 0.00 0.00 39.02 2.90
2018 2322 5.013495 CCATCCATCCAGGTTACTCATGTAT 59.987 44.000 0.00 0.00 39.02 2.29
2019 2323 5.551305 TCCATCCAGGTTACTCATGTATG 57.449 43.478 0.00 0.00 39.02 2.39
2022 2326 4.137116 TCCAGGTTACTCATGTATGTGC 57.863 45.455 0.00 0.00 0.00 4.57
2023 2327 3.517500 TCCAGGTTACTCATGTATGTGCA 59.482 43.478 0.00 0.00 0.00 4.57
2024 2328 3.623060 CCAGGTTACTCATGTATGTGCAC 59.377 47.826 10.75 10.75 0.00 4.57
2027 2331 1.555477 TACTCATGTATGTGCACGCG 58.445 50.000 13.13 3.53 0.00 6.01
2119 2439 4.736896 GACACGTCGGCCCTGGTC 62.737 72.222 0.00 0.00 0.00 4.02
2179 2499 2.583520 CAGCAGGAGGTGGAGCTC 59.416 66.667 4.71 4.71 39.53 4.09
2302 2622 0.680921 GCAAGGGCTACATCAAGGCA 60.681 55.000 0.00 0.00 43.58 4.75
2316 2636 2.149578 CAAGGCATTCTGATCCGATCC 58.850 52.381 5.91 0.00 0.00 3.36
2318 2638 1.071385 AGGCATTCTGATCCGATCCAC 59.929 52.381 5.91 0.00 0.00 4.02
2320 2640 1.269778 GCATTCTGATCCGATCCACGA 60.270 52.381 5.91 0.00 45.77 4.35
2321 2641 2.398498 CATTCTGATCCGATCCACGAC 58.602 52.381 5.91 0.00 45.77 4.34
2322 2642 0.744874 TTCTGATCCGATCCACGACC 59.255 55.000 5.91 0.00 45.77 4.79
2324 2644 1.380650 TGATCCGATCCACGACCCA 60.381 57.895 5.91 0.00 45.77 4.51
2325 2645 0.759060 TGATCCGATCCACGACCCAT 60.759 55.000 5.91 0.00 45.77 4.00
2326 2646 0.319900 GATCCGATCCACGACCCATG 60.320 60.000 0.00 0.00 45.77 3.66
2327 2647 2.383245 ATCCGATCCACGACCCATGC 62.383 60.000 0.00 0.00 45.77 4.06
2329 2649 2.186903 GATCCACGACCCATGCGT 59.813 61.111 0.00 0.00 43.67 5.24
2333 2653 2.126228 CACGACCCATGCGTACGT 60.126 61.111 17.90 0.00 40.44 3.57
2344 2664 2.173141 CGTACGTACGTGCGTGGA 59.827 61.111 38.84 18.87 46.22 4.02
2345 2665 1.860423 CGTACGTACGTGCGTGGAG 60.860 63.158 38.84 23.95 46.22 3.86
2346 2666 2.148365 GTACGTACGTGCGTGGAGC 61.148 63.158 36.35 21.17 45.33 4.70
2362 2682 3.479370 GCTACCTGCTGCTTCACG 58.521 61.111 0.00 0.00 38.95 4.35
2363 2683 2.744768 GCTACCTGCTGCTTCACGC 61.745 63.158 0.00 0.00 38.95 5.34
2364 2684 2.432456 TACCTGCTGCTTCACGCG 60.432 61.111 3.53 3.53 43.27 6.01
2367 2687 3.720193 CTGCTGCTTCACGCGCTT 61.720 61.111 5.73 0.00 43.27 4.68
2368 2688 3.923356 CTGCTGCTTCACGCGCTTG 62.923 63.158 5.73 7.71 43.27 4.01
2369 2689 4.748679 GCTGCTTCACGCGCTTGG 62.749 66.667 14.45 0.00 43.27 3.61
2370 2690 4.748679 CTGCTTCACGCGCTTGGC 62.749 66.667 14.45 10.85 43.27 4.52
2372 2692 4.451652 GCTTCACGCGCTTGGCTC 62.452 66.667 14.45 0.00 40.44 4.70
2373 2693 3.043713 CTTCACGCGCTTGGCTCA 61.044 61.111 14.45 0.00 40.44 4.26
2374 2694 3.300667 CTTCACGCGCTTGGCTCAC 62.301 63.158 14.45 0.00 40.44 3.51
2384 2704 3.418687 TGGCTCACCATGGATGCT 58.581 55.556 21.47 0.00 42.67 3.79
2385 2705 1.693034 TGGCTCACCATGGATGCTT 59.307 52.632 21.47 0.00 42.67 3.91
2386 2706 0.918258 TGGCTCACCATGGATGCTTA 59.082 50.000 21.47 9.64 42.67 3.09
2387 2707 1.284491 TGGCTCACCATGGATGCTTAA 59.716 47.619 21.47 6.77 42.67 1.85
2388 2708 2.091720 TGGCTCACCATGGATGCTTAAT 60.092 45.455 21.47 0.00 42.67 1.40
2389 2709 2.961062 GGCTCACCATGGATGCTTAATT 59.039 45.455 21.47 0.00 35.26 1.40
2390 2710 4.144297 GGCTCACCATGGATGCTTAATTA 58.856 43.478 21.47 0.00 35.26 1.40
2391 2711 4.217118 GGCTCACCATGGATGCTTAATTAG 59.783 45.833 21.47 5.79 35.26 1.73
2392 2712 7.284141 GGCTCACCATGGATGCTTAATTAGC 62.284 48.000 21.47 14.19 42.68 3.09
2479 2803 3.062042 AGTCGTTCGTTTGTAATGGTCC 58.938 45.455 0.00 0.00 0.00 4.46
2488 2815 4.560035 CGTTTGTAATGGTCCGTAGTAGTG 59.440 45.833 0.00 0.00 0.00 2.74
2524 2855 2.430694 TGTCGTCCAAGGGTCTGATATG 59.569 50.000 0.00 0.00 0.00 1.78
2623 2956 5.748402 TCCTTGTTGATTCAGTGATGCTAT 58.252 37.500 0.00 0.00 0.00 2.97
2681 3015 0.096454 GTCCCTGTTTATTCGCACGC 59.904 55.000 0.00 0.00 0.00 5.34
2758 3101 2.352805 GAGTGGGAGTTGGCTGGG 59.647 66.667 0.00 0.00 0.00 4.45
2773 3116 0.246635 CTGGGTGGTCGGAGTACAAG 59.753 60.000 0.00 0.00 0.00 3.16
2831 3174 3.674997 ACACACACATACATTCACCCTC 58.325 45.455 0.00 0.00 0.00 4.30
2839 3194 1.967319 ACATTCACCCTCACACACAC 58.033 50.000 0.00 0.00 0.00 3.82
2845 3200 1.597854 CCCTCACACACACGCACAT 60.598 57.895 0.00 0.00 0.00 3.21
2893 3252 3.987868 TCTTGTAGTCGACAGAAACATGC 59.012 43.478 19.50 0.00 39.88 4.06
2903 3262 1.388093 CAGAAACATGCTCGTCGACAG 59.612 52.381 17.16 12.82 0.00 3.51
2907 3266 0.598562 ACATGCTCGTCGACAGAGTT 59.401 50.000 26.57 17.36 37.99 3.01
2922 3281 1.141657 AGAGTTGAAGCTGCTTGGTCA 59.858 47.619 21.25 9.14 0.00 4.02
2924 3283 2.157738 AGTTGAAGCTGCTTGGTCATC 58.842 47.619 21.25 10.75 0.00 2.92
2929 3288 1.738099 GCTGCTTGGTCATCGACGT 60.738 57.895 0.00 0.00 32.65 4.34
2936 3295 0.103390 TGGTCATCGACGTTGTGTGT 59.897 50.000 1.96 0.00 32.65 3.72
2943 3302 1.656594 TCGACGTTGTGTGTTTGACTG 59.343 47.619 1.96 0.00 0.00 3.51
3010 3369 1.516386 CTTCGGTGGTCGTCGATGG 60.516 63.158 4.48 0.00 40.32 3.51
3032 3391 1.627550 GAGTCGAAGTCGCCCTTTGC 61.628 60.000 0.00 0.00 39.60 3.68
3146 3505 3.442950 CGGTTTTCGTCCGGTTTTC 57.557 52.632 0.00 0.00 43.68 2.29
3173 3532 7.384115 CGTTAATTAACTGGACAACTCTCTTCA 59.616 37.037 22.57 0.00 34.12 3.02
3180 3539 4.451900 TGGACAACTCTCTTCAACCTTTC 58.548 43.478 0.00 0.00 0.00 2.62
3194 3553 8.163408 TCTTCAACCTTTCTTTAATGGATCAGA 58.837 33.333 0.00 0.00 34.68 3.27
3196 3555 7.230747 TCAACCTTTCTTTAATGGATCAGACA 58.769 34.615 0.00 0.00 34.68 3.41
3254 3617 2.100749 CCACCAAACAAGACTTGAACCC 59.899 50.000 21.95 0.00 0.00 4.11
3255 3618 3.023832 CACCAAACAAGACTTGAACCCT 58.976 45.455 21.95 0.00 0.00 4.34
3256 3619 4.204012 CACCAAACAAGACTTGAACCCTA 58.796 43.478 21.95 0.00 0.00 3.53
3300 3664 7.681939 AAAAATCTAACCATCTAAGCAACGA 57.318 32.000 0.00 0.00 0.00 3.85
3304 3668 8.958119 AATCTAACCATCTAAGCAACGATTAA 57.042 30.769 0.00 0.00 0.00 1.40
3305 3669 7.766219 TCTAACCATCTAAGCAACGATTAAC 57.234 36.000 0.00 0.00 0.00 2.01
3306 3670 7.324935 TCTAACCATCTAAGCAACGATTAACA 58.675 34.615 0.00 0.00 0.00 2.41
3307 3671 7.985184 TCTAACCATCTAAGCAACGATTAACAT 59.015 33.333 0.00 0.00 0.00 2.71
3308 3672 6.363577 ACCATCTAAGCAACGATTAACATG 57.636 37.500 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.389091 ACAACGTTTTGATGCATGATACATT 58.611 32.000 2.46 0.00 36.48 2.71
1 2 5.953183 ACAACGTTTTGATGCATGATACAT 58.047 33.333 2.46 0.00 36.48 2.29
2 3 5.369685 ACAACGTTTTGATGCATGATACA 57.630 34.783 2.46 0.00 36.48 2.29
3 4 5.452302 GCTACAACGTTTTGATGCATGATAC 59.548 40.000 2.46 0.00 36.48 2.24
4 5 5.353956 AGCTACAACGTTTTGATGCATGATA 59.646 36.000 2.46 0.00 37.13 2.15
5 6 4.156556 AGCTACAACGTTTTGATGCATGAT 59.843 37.500 2.46 0.00 37.13 2.45
6 7 3.501828 AGCTACAACGTTTTGATGCATGA 59.498 39.130 2.46 0.00 37.13 3.07
7 8 3.825308 AGCTACAACGTTTTGATGCATG 58.175 40.909 2.46 0.00 37.13 4.06
8 9 4.695455 ACTAGCTACAACGTTTTGATGCAT 59.305 37.500 0.00 0.00 37.13 3.96
9 10 4.062293 ACTAGCTACAACGTTTTGATGCA 58.938 39.130 0.00 0.00 37.13 3.96
10 11 4.151689 TCACTAGCTACAACGTTTTGATGC 59.848 41.667 0.00 0.00 36.48 3.91
11 12 5.839262 TCACTAGCTACAACGTTTTGATG 57.161 39.130 0.00 0.00 36.48 3.07
12 13 5.178809 GGTTCACTAGCTACAACGTTTTGAT 59.821 40.000 0.00 0.00 36.48 2.57
13 14 4.508861 GGTTCACTAGCTACAACGTTTTGA 59.491 41.667 0.00 0.00 36.48 2.69
14 15 4.607557 CGGTTCACTAGCTACAACGTTTTG 60.608 45.833 0.00 0.00 38.83 2.44
15 16 3.492011 CGGTTCACTAGCTACAACGTTTT 59.508 43.478 0.00 0.00 0.00 2.43
16 17 3.054878 CGGTTCACTAGCTACAACGTTT 58.945 45.455 0.00 0.00 0.00 3.60
17 18 2.608752 CCGGTTCACTAGCTACAACGTT 60.609 50.000 0.00 0.00 0.00 3.99
18 19 1.068055 CCGGTTCACTAGCTACAACGT 60.068 52.381 0.00 0.00 0.00 3.99
19 20 1.200716 TCCGGTTCACTAGCTACAACG 59.799 52.381 0.00 0.00 0.00 4.10
20 21 2.230750 AGTCCGGTTCACTAGCTACAAC 59.769 50.000 0.00 0.00 0.00 3.32
21 22 2.522185 AGTCCGGTTCACTAGCTACAA 58.478 47.619 0.00 0.00 0.00 2.41
22 23 2.211250 AGTCCGGTTCACTAGCTACA 57.789 50.000 0.00 0.00 0.00 2.74
23 24 2.490903 TCAAGTCCGGTTCACTAGCTAC 59.509 50.000 0.00 0.00 0.00 3.58
24 25 2.753452 CTCAAGTCCGGTTCACTAGCTA 59.247 50.000 0.00 0.00 0.00 3.32
25 26 1.546476 CTCAAGTCCGGTTCACTAGCT 59.454 52.381 0.00 0.00 0.00 3.32
26 27 1.997669 CTCAAGTCCGGTTCACTAGC 58.002 55.000 0.00 0.00 0.00 3.42
27 28 1.546476 AGCTCAAGTCCGGTTCACTAG 59.454 52.381 0.00 0.00 0.00 2.57
28 29 1.272490 CAGCTCAAGTCCGGTTCACTA 59.728 52.381 0.00 0.00 0.00 2.74
29 30 0.034059 CAGCTCAAGTCCGGTTCACT 59.966 55.000 0.00 0.00 0.00 3.41
30 31 0.249911 ACAGCTCAAGTCCGGTTCAC 60.250 55.000 0.00 0.00 0.00 3.18
31 32 0.249868 CACAGCTCAAGTCCGGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
32 33 1.569479 GCACAGCTCAAGTCCGGTTC 61.569 60.000 0.00 0.00 0.00 3.62
33 34 1.598130 GCACAGCTCAAGTCCGGTT 60.598 57.895 0.00 0.00 0.00 4.44
34 35 2.031163 GCACAGCTCAAGTCCGGT 59.969 61.111 0.00 0.00 0.00 5.28
35 36 1.597854 TTGCACAGCTCAAGTCCGG 60.598 57.895 0.00 0.00 0.00 5.14
36 37 0.882042 AGTTGCACAGCTCAAGTCCG 60.882 55.000 0.00 0.00 0.00 4.79
37 38 0.590195 CAGTTGCACAGCTCAAGTCC 59.410 55.000 0.00 0.00 0.00 3.85
38 39 1.586422 TCAGTTGCACAGCTCAAGTC 58.414 50.000 0.00 0.00 0.00 3.01
39 40 1.672881 GTTCAGTTGCACAGCTCAAGT 59.327 47.619 0.00 0.00 0.00 3.16
40 41 1.333524 CGTTCAGTTGCACAGCTCAAG 60.334 52.381 0.00 0.00 0.00 3.02
41 42 0.657312 CGTTCAGTTGCACAGCTCAA 59.343 50.000 0.00 0.00 0.00 3.02
42 43 1.159713 CCGTTCAGTTGCACAGCTCA 61.160 55.000 0.00 0.00 0.00 4.26
43 44 0.880278 TCCGTTCAGTTGCACAGCTC 60.880 55.000 0.00 0.00 0.00 4.09
44 45 1.146041 TCCGTTCAGTTGCACAGCT 59.854 52.632 0.00 0.00 0.00 4.24
45 46 1.279840 GTCCGTTCAGTTGCACAGC 59.720 57.895 0.00 0.00 0.00 4.40
46 47 1.507141 GGGTCCGTTCAGTTGCACAG 61.507 60.000 0.00 0.00 0.00 3.66
47 48 1.525077 GGGTCCGTTCAGTTGCACA 60.525 57.895 0.00 0.00 0.00 4.57
48 49 1.098712 TTGGGTCCGTTCAGTTGCAC 61.099 55.000 0.00 0.00 0.00 4.57
49 50 0.394488 TTTGGGTCCGTTCAGTTGCA 60.394 50.000 0.00 0.00 0.00 4.08
50 51 0.310854 CTTTGGGTCCGTTCAGTTGC 59.689 55.000 0.00 0.00 0.00 4.17
51 52 1.961793 TCTTTGGGTCCGTTCAGTTG 58.038 50.000 0.00 0.00 0.00 3.16
52 53 2.504367 CATCTTTGGGTCCGTTCAGTT 58.496 47.619 0.00 0.00 0.00 3.16
53 54 1.882352 GCATCTTTGGGTCCGTTCAGT 60.882 52.381 0.00 0.00 0.00 3.41
54 55 0.804989 GCATCTTTGGGTCCGTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
55 56 0.109532 TGCATCTTTGGGTCCGTTCA 59.890 50.000 0.00 0.00 0.00 3.18
56 57 1.243902 TTGCATCTTTGGGTCCGTTC 58.756 50.000 0.00 0.00 0.00 3.95
57 58 1.545582 CATTGCATCTTTGGGTCCGTT 59.454 47.619 0.00 0.00 0.00 4.44
58 59 1.176527 CATTGCATCTTTGGGTCCGT 58.823 50.000 0.00 0.00 0.00 4.69
59 60 0.457035 CCATTGCATCTTTGGGTCCG 59.543 55.000 0.00 0.00 0.00 4.79
60 61 0.176449 GCCATTGCATCTTTGGGTCC 59.824 55.000 7.38 0.00 37.47 4.46
61 62 1.188863 AGCCATTGCATCTTTGGGTC 58.811 50.000 4.84 0.00 36.56 4.46
62 63 2.381911 CTAGCCATTGCATCTTTGGGT 58.618 47.619 12.76 12.76 43.31 4.51
63 64 1.068127 GCTAGCCATTGCATCTTTGGG 59.932 52.381 2.29 0.00 41.13 4.12
64 65 2.029623 AGCTAGCCATTGCATCTTTGG 58.970 47.619 12.13 0.00 41.13 3.28
65 66 3.795623 AAGCTAGCCATTGCATCTTTG 57.204 42.857 12.13 0.00 41.13 2.77
66 67 6.475596 AATTAAGCTAGCCATTGCATCTTT 57.524 33.333 12.13 0.00 41.13 2.52
67 68 7.211966 CTAATTAAGCTAGCCATTGCATCTT 57.788 36.000 12.13 0.00 41.13 2.40
68 69 6.814506 CTAATTAAGCTAGCCATTGCATCT 57.185 37.500 12.13 0.00 41.13 2.90
83 84 5.496387 CACTCAACGATGCAGCTAATTAAG 58.504 41.667 0.00 0.00 0.00 1.85
84 85 4.201812 GCACTCAACGATGCAGCTAATTAA 60.202 41.667 0.00 0.00 41.65 1.40
85 86 3.309682 GCACTCAACGATGCAGCTAATTA 59.690 43.478 0.00 0.00 41.65 1.40
86 87 2.096496 GCACTCAACGATGCAGCTAATT 59.904 45.455 0.00 0.00 41.65 1.40
87 88 1.667724 GCACTCAACGATGCAGCTAAT 59.332 47.619 0.00 0.00 41.65 1.73
88 89 1.078709 GCACTCAACGATGCAGCTAA 58.921 50.000 0.00 0.00 41.65 3.09
89 90 0.247460 AGCACTCAACGATGCAGCTA 59.753 50.000 0.00 0.00 44.59 3.32
90 91 1.004080 AGCACTCAACGATGCAGCT 60.004 52.632 0.00 0.00 44.59 4.24
91 92 1.134075 CAGCACTCAACGATGCAGC 59.866 57.895 0.00 0.00 44.59 5.25
92 93 1.642037 CCCAGCACTCAACGATGCAG 61.642 60.000 0.00 0.00 44.59 4.41
93 94 1.672030 CCCAGCACTCAACGATGCA 60.672 57.895 0.00 0.00 44.59 3.96
94 95 3.044059 GCCCAGCACTCAACGATGC 62.044 63.158 0.00 0.00 42.39 3.91
95 96 1.376424 AGCCCAGCACTCAACGATG 60.376 57.895 0.00 0.00 0.00 3.84
96 97 1.376424 CAGCCCAGCACTCAACGAT 60.376 57.895 0.00 0.00 0.00 3.73
97 98 2.031012 CAGCCCAGCACTCAACGA 59.969 61.111 0.00 0.00 0.00 3.85
98 99 3.052082 CCAGCCCAGCACTCAACG 61.052 66.667 0.00 0.00 0.00 4.10
99 100 2.674380 CCCAGCCCAGCACTCAAC 60.674 66.667 0.00 0.00 0.00 3.18
100 101 3.177884 ACCCAGCCCAGCACTCAA 61.178 61.111 0.00 0.00 0.00 3.02
101 102 3.957586 CACCCAGCCCAGCACTCA 61.958 66.667 0.00 0.00 0.00 3.41
102 103 3.958860 ACACCCAGCCCAGCACTC 61.959 66.667 0.00 0.00 0.00 3.51
103 104 4.275508 CACACCCAGCCCAGCACT 62.276 66.667 0.00 0.00 0.00 4.40
104 105 4.269523 TCACACCCAGCCCAGCAC 62.270 66.667 0.00 0.00 0.00 4.40
105 106 4.269523 GTCACACCCAGCCCAGCA 62.270 66.667 0.00 0.00 0.00 4.41
106 107 3.958860 AGTCACACCCAGCCCAGC 61.959 66.667 0.00 0.00 0.00 4.85
107 108 2.033141 CAGTCACACCCAGCCCAG 59.967 66.667 0.00 0.00 0.00 4.45
108 109 2.772191 ACAGTCACACCCAGCCCA 60.772 61.111 0.00 0.00 0.00 5.36
109 110 2.281761 CACAGTCACACCCAGCCC 60.282 66.667 0.00 0.00 0.00 5.19
110 111 1.598130 GTCACAGTCACACCCAGCC 60.598 63.158 0.00 0.00 0.00 4.85
111 112 1.956170 CGTCACAGTCACACCCAGC 60.956 63.158 0.00 0.00 0.00 4.85
112 113 0.875908 CACGTCACAGTCACACCCAG 60.876 60.000 0.00 0.00 0.00 4.45
113 114 1.142965 CACGTCACAGTCACACCCA 59.857 57.895 0.00 0.00 0.00 4.51
114 115 0.874607 GACACGTCACAGTCACACCC 60.875 60.000 0.00 0.00 34.93 4.61
115 116 1.206745 CGACACGTCACAGTCACACC 61.207 60.000 4.84 0.00 34.48 4.16
116 117 1.206745 CCGACACGTCACAGTCACAC 61.207 60.000 4.84 0.00 34.48 3.82
117 118 1.065109 CCGACACGTCACAGTCACA 59.935 57.895 4.84 0.00 34.48 3.58
118 119 0.526954 AACCGACACGTCACAGTCAC 60.527 55.000 4.84 0.00 34.48 3.67
119 120 0.526739 CAACCGACACGTCACAGTCA 60.527 55.000 4.84 0.00 34.48 3.41
120 121 0.526954 ACAACCGACACGTCACAGTC 60.527 55.000 0.00 0.00 0.00 3.51
121 122 0.740149 TACAACCGACACGTCACAGT 59.260 50.000 0.00 0.00 0.00 3.55
122 123 1.784856 CTTACAACCGACACGTCACAG 59.215 52.381 0.00 0.00 0.00 3.66
140 141 0.320697 GCGTGACCTGACCTTACCTT 59.679 55.000 0.00 0.00 0.00 3.50
145 146 0.396435 TCAATGCGTGACCTGACCTT 59.604 50.000 0.00 0.00 0.00 3.50
166 172 4.878397 AGGACTATGCATTTTTCTCTTCCG 59.122 41.667 3.54 0.00 0.00 4.30
178 184 1.068083 CGCGGTGAGGACTATGCAT 59.932 57.895 3.79 3.79 0.00 3.96
210 216 3.040147 AGCTAAAACTTGCAGCGAGTA 57.960 42.857 16.19 0.00 40.29 2.59
258 264 0.454600 GTGCTTGCATGCAGCTACAT 59.545 50.000 29.43 0.00 44.20 2.29
288 294 4.761975 GATACCGTTGTATCCCACTGAAA 58.238 43.478 2.04 0.00 45.07 2.69
289 295 4.395959 GATACCGTTGTATCCCACTGAA 57.604 45.455 2.04 0.00 45.07 3.02
306 312 6.251589 CGATCGCCAACAAGATAGTATGATAC 59.748 42.308 0.26 0.00 0.00 2.24
309 315 4.277423 TCGATCGCCAACAAGATAGTATGA 59.723 41.667 11.09 0.00 0.00 2.15
313 319 3.068165 TCATCGATCGCCAACAAGATAGT 59.932 43.478 11.09 0.00 0.00 2.12
314 320 3.426859 GTCATCGATCGCCAACAAGATAG 59.573 47.826 11.09 0.00 0.00 2.08
319 329 1.358877 CTGTCATCGATCGCCAACAA 58.641 50.000 11.09 0.00 0.00 2.83
339 349 0.940126 GAGCCTTGCATCCGTACATG 59.060 55.000 0.00 0.00 0.00 3.21
340 350 0.541392 TGAGCCTTGCATCCGTACAT 59.459 50.000 0.00 0.00 0.00 2.29
341 351 0.541392 ATGAGCCTTGCATCCGTACA 59.459 50.000 0.00 0.00 0.00 2.90
343 353 1.069204 GAGATGAGCCTTGCATCCGTA 59.931 52.381 0.00 0.00 42.36 4.02
345 355 0.179065 TGAGATGAGCCTTGCATCCG 60.179 55.000 0.00 0.00 42.36 4.18
361 382 1.065551 TGACGCATCGACTGGTATGAG 59.934 52.381 0.00 0.00 0.00 2.90
362 383 1.099689 TGACGCATCGACTGGTATGA 58.900 50.000 0.00 0.00 0.00 2.15
365 386 1.921243 CATTGACGCATCGACTGGTA 58.079 50.000 0.00 0.00 0.00 3.25
366 387 1.361668 GCATTGACGCATCGACTGGT 61.362 55.000 0.00 0.00 0.00 4.00
367 388 1.349627 GCATTGACGCATCGACTGG 59.650 57.895 0.00 0.00 0.00 4.00
368 389 2.080700 TGCATTGACGCATCGACTG 58.919 52.632 0.00 0.00 36.86 3.51
369 390 4.596311 TGCATTGACGCATCGACT 57.404 50.000 0.00 0.00 36.86 4.18
376 397 1.434287 TGCCATGATGCATTGACGC 59.566 52.632 0.00 1.58 36.04 5.19
387 408 3.672781 CGTGTGCAATAACAATGCCATGA 60.673 43.478 0.00 0.00 43.16 3.07
420 441 9.961265 GCCTTTACAGAAGTTACATTACTTTTT 57.039 29.630 0.00 0.00 38.43 1.94
421 442 8.287503 CGCCTTTACAGAAGTTACATTACTTTT 58.712 33.333 0.00 0.00 38.43 2.27
430 459 4.229876 ACGTACGCCTTTACAGAAGTTAC 58.770 43.478 16.72 0.00 0.00 2.50
434 463 7.579726 AGTATATACGTACGCCTTTACAGAAG 58.420 38.462 16.72 0.00 0.00 2.85
436 465 8.601845 TTAGTATATACGTACGCCTTTACAGA 57.398 34.615 16.72 3.01 0.00 3.41
461 490 9.971922 CAGAAAGAGAAACCAAATCATAAAACT 57.028 29.630 0.00 0.00 0.00 2.66
502 691 4.227538 CACAGAACCACTTGTACGTAGAG 58.772 47.826 0.00 0.00 0.00 2.43
503 692 3.005050 CCACAGAACCACTTGTACGTAGA 59.995 47.826 0.00 0.00 0.00 2.59
504 693 3.005050 TCCACAGAACCACTTGTACGTAG 59.995 47.826 0.00 0.00 0.00 3.51
505 694 2.957680 TCCACAGAACCACTTGTACGTA 59.042 45.455 0.00 0.00 0.00 3.57
506 695 1.758280 TCCACAGAACCACTTGTACGT 59.242 47.619 0.00 0.00 0.00 3.57
507 696 2.519377 TCCACAGAACCACTTGTACG 57.481 50.000 0.00 0.00 0.00 3.67
508 697 6.870971 TTAATTCCACAGAACCACTTGTAC 57.129 37.500 0.00 0.00 33.97 2.90
509 698 7.001674 ACATTAATTCCACAGAACCACTTGTA 58.998 34.615 0.00 0.00 33.97 2.41
510 699 5.833131 ACATTAATTCCACAGAACCACTTGT 59.167 36.000 0.00 0.00 33.97 3.16
512 701 7.001674 TGTACATTAATTCCACAGAACCACTT 58.998 34.615 0.00 0.00 33.97 3.16
551 745 9.469807 GGACATGTGATAGAATTTAGAGTAGTG 57.530 37.037 1.15 0.00 0.00 2.74
560 754 8.954950 CTCTACAAGGACATGTGATAGAATTT 57.045 34.615 1.15 0.00 34.75 1.82
594 788 0.808060 CTGTGTACCACGTGTGTGCA 60.808 55.000 18.66 18.66 45.04 4.57
609 810 2.800544 GTTACGGCCATATACTGCTGTG 59.199 50.000 16.35 0.00 46.15 3.66
625 826 0.466963 AAAGGGGGCTATCGGTTACG 59.533 55.000 0.00 0.00 42.74 3.18
640 842 1.664151 GACGTTATCGGGAGCAAAAGG 59.336 52.381 0.00 0.00 41.85 3.11
641 843 1.664151 GGACGTTATCGGGAGCAAAAG 59.336 52.381 0.00 0.00 41.85 2.27
649 851 1.672441 TTCCGTTTGGACGTTATCGGG 60.672 52.381 14.69 3.39 46.45 5.14
653 855 2.418628 CAGCATTCCGTTTGGACGTTAT 59.581 45.455 0.00 0.00 46.45 1.89
657 859 0.110238 CACAGCATTCCGTTTGGACG 60.110 55.000 0.00 0.00 46.45 4.79
846 1053 3.954904 CCGTGTATATATAGCAGAGCCCT 59.045 47.826 0.00 0.00 0.00 5.19
883 1096 1.559831 GCAGTGCTTGTGTGGTTTTC 58.440 50.000 8.18 0.00 0.00 2.29
919 1133 2.104792 TGTGTGTTCTTCTCCTTCCCAG 59.895 50.000 0.00 0.00 0.00 4.45
942 1182 3.132160 GCAGATCAGATGGATGTGTCTG 58.868 50.000 0.00 9.81 46.26 3.51
970 1211 3.193267 ACGGGTACAAAGCACGATAACTA 59.807 43.478 0.00 0.00 0.00 2.24
971 1212 2.028748 ACGGGTACAAAGCACGATAACT 60.029 45.455 0.00 0.00 0.00 2.24
972 1213 2.093152 CACGGGTACAAAGCACGATAAC 59.907 50.000 0.00 0.00 0.00 1.89
973 1214 2.029200 TCACGGGTACAAAGCACGATAA 60.029 45.455 0.00 0.00 0.00 1.75
974 1215 1.545136 TCACGGGTACAAAGCACGATA 59.455 47.619 0.00 0.00 0.00 2.92
975 1216 0.319083 TCACGGGTACAAAGCACGAT 59.681 50.000 0.00 0.00 0.00 3.73
976 1217 0.319083 ATCACGGGTACAAAGCACGA 59.681 50.000 0.00 0.00 0.00 4.35
989 1230 0.395686 ATCTGCCATCCTGATCACGG 59.604 55.000 0.00 0.00 0.00 4.94
991 1239 1.544982 CCCATCTGCCATCCTGATCAC 60.545 57.143 0.00 0.00 30.62 3.06
1008 1256 1.617536 AGCCATGGAGAAGAGCCCA 60.618 57.895 18.40 0.00 36.79 5.36
1090 1338 1.361668 ATGCACGCATCGAACACCTC 61.362 55.000 0.00 0.00 29.42 3.85
1092 1340 1.226101 CATGCACGCATCGAACACC 60.226 57.895 0.44 0.00 33.90 4.16
1093 1341 1.864750 GCATGCACGCATCGAACAC 60.865 57.895 14.21 0.00 33.90 3.32
1102 1350 0.439600 GTTTGGAAATGCATGCACGC 59.560 50.000 25.37 14.86 0.00 5.34
1103 1351 1.070038 GGTTTGGAAATGCATGCACG 58.930 50.000 25.37 0.00 0.00 5.34
1104 1352 2.166821 TGGTTTGGAAATGCATGCAC 57.833 45.000 25.37 11.08 0.00 4.57
1111 1365 6.093219 TGTGACAAAACAATGGTTTGGAAATG 59.907 34.615 25.22 2.78 46.20 2.32
1143 1398 2.906354 ACACTTTGTGTCAGTGAGACC 58.094 47.619 17.09 1.03 43.92 3.85
1253 1508 6.097839 ACAGGAGATGCATGCAAAAGATTAAT 59.902 34.615 26.68 4.06 0.00 1.40
1267 1522 2.616256 GGTGATCACAACAGGAGATGCA 60.616 50.000 26.47 0.00 33.34 3.96
1270 1525 3.882444 CATGGTGATCACAACAGGAGAT 58.118 45.455 26.47 0.00 46.61 2.75
1333 1588 4.938226 TCAAACAGTCAACACATGTGTACA 59.062 37.500 30.75 17.63 44.13 2.90
1334 1589 5.478233 TCAAACAGTCAACACATGTGTAC 57.522 39.130 30.75 24.69 44.13 2.90
1335 1590 5.412904 TGTTCAAACAGTCAACACATGTGTA 59.587 36.000 30.75 14.59 37.32 2.90
1336 1591 4.217334 TGTTCAAACAGTCAACACATGTGT 59.783 37.500 25.76 25.76 38.77 3.72
1350 1605 0.745128 AACGTCGGCCTGTTCAAACA 60.745 50.000 0.00 0.00 37.37 2.83
1352 1607 1.161563 GGAACGTCGGCCTGTTCAAA 61.162 55.000 24.63 0.00 44.85 2.69
1353 1608 1.595929 GGAACGTCGGCCTGTTCAA 60.596 57.895 24.63 0.00 44.85 2.69
1355 1610 2.027625 CAGGAACGTCGGCCTGTTC 61.028 63.158 21.57 18.74 45.21 3.18
1356 1611 2.030562 CAGGAACGTCGGCCTGTT 59.969 61.111 21.57 2.41 45.21 3.16
1738 2029 9.128404 TCACTCAAACAAGAGAAGTAGTAGTAA 57.872 33.333 0.00 0.00 38.98 2.24
1749 2043 7.604164 GGTCTTATTGATCACTCAAACAAGAGA 59.396 37.037 0.00 0.00 44.29 3.10
1767 2064 9.427821 AGTTACTGTAGATCTCATGGTCTTATT 57.572 33.333 0.00 0.00 0.00 1.40
1769 2066 9.916360 TTAGTTACTGTAGATCTCATGGTCTTA 57.084 33.333 0.00 0.00 0.00 2.10
1953 2250 2.205022 TGATTGTGGAAGAAGCAGGG 57.795 50.000 0.00 0.00 27.35 4.45
1956 2253 4.464008 AGAAACTGATTGTGGAAGAAGCA 58.536 39.130 0.00 0.00 31.09 3.91
1957 2254 5.444663 AAGAAACTGATTGTGGAAGAAGC 57.555 39.130 0.00 0.00 0.00 3.86
1964 2261 3.799035 CGACGAAAGAAACTGATTGTGG 58.201 45.455 0.00 0.00 0.00 4.17
1978 2282 3.502595 TGGATGGTTAATTTGCGACGAAA 59.497 39.130 0.00 0.00 0.00 3.46
1982 2286 3.380004 TGGATGGATGGTTAATTTGCGAC 59.620 43.478 0.00 0.00 0.00 5.19
1983 2287 3.625853 TGGATGGATGGTTAATTTGCGA 58.374 40.909 0.00 0.00 0.00 5.10
1984 2288 3.243501 CCTGGATGGATGGTTAATTTGCG 60.244 47.826 0.00 0.00 38.35 4.85
1985 2289 3.706086 ACCTGGATGGATGGTTAATTTGC 59.294 43.478 0.00 0.00 39.71 3.68
1986 2290 5.937975 AACCTGGATGGATGGTTAATTTG 57.062 39.130 0.00 0.00 41.68 2.32
1987 2291 6.741724 AGTAACCTGGATGGATGGTTAATTT 58.258 36.000 0.00 0.00 44.67 1.82
1988 2292 6.069088 TGAGTAACCTGGATGGATGGTTAATT 60.069 38.462 0.00 0.00 44.67 1.40
1989 2293 5.431731 TGAGTAACCTGGATGGATGGTTAAT 59.568 40.000 0.00 4.86 44.67 1.40
1995 2299 4.428294 ACATGAGTAACCTGGATGGATG 57.572 45.455 0.00 0.00 39.71 3.51
1999 2303 4.512944 GCACATACATGAGTAACCTGGATG 59.487 45.833 0.00 0.00 39.99 3.51
2005 2309 2.030457 GCGTGCACATACATGAGTAACC 59.970 50.000 18.64 0.00 33.13 2.85
2007 2311 1.923864 CGCGTGCACATACATGAGTAA 59.076 47.619 18.64 0.00 33.13 2.24
2008 2312 1.135228 ACGCGTGCACATACATGAGTA 60.135 47.619 12.93 0.00 37.74 2.59
2027 2331 3.414700 CACGTTCGGGAGCTGCAC 61.415 66.667 7.79 0.00 0.00 4.57
2302 2622 1.341531 GGTCGTGGATCGGATCAGAAT 59.658 52.381 18.99 0.00 40.32 2.40
2316 2636 1.135699 GTACGTACGCATGGGTCGTG 61.136 60.000 31.01 20.93 40.69 4.35
2318 2638 1.935917 CGTACGTACGCATGGGTCG 60.936 63.158 32.36 21.91 43.14 4.79
2329 2649 1.018752 TAGCTCCACGCACGTACGTA 61.019 55.000 22.34 3.04 46.34 3.57
2333 2653 1.676635 AGGTAGCTCCACGCACGTA 60.677 57.895 0.00 0.00 42.61 3.57
2345 2665 3.479370 CGTGAAGCAGCAGGTAGC 58.521 61.111 0.00 0.00 46.19 3.58
2355 2675 4.451652 GAGCCAAGCGCGTGAAGC 62.452 66.667 25.23 19.36 44.76 3.86
2356 2676 3.043713 TGAGCCAAGCGCGTGAAG 61.044 61.111 25.23 10.01 44.76 3.02
2357 2677 3.345808 GTGAGCCAAGCGCGTGAA 61.346 61.111 25.23 4.47 44.76 3.18
2368 2688 2.057137 TTAAGCATCCATGGTGAGCC 57.943 50.000 12.58 0.00 38.70 4.70
2369 2689 5.368256 CTAATTAAGCATCCATGGTGAGC 57.632 43.478 12.58 14.04 38.70 4.26
2479 2803 1.917955 CACGAATGTGCCACTACTACG 59.082 52.381 0.00 0.00 39.67 3.51
2541 2872 5.416083 CACGTGGAATGGTAGATCAGTTAA 58.584 41.667 7.95 0.00 0.00 2.01
2597 2930 4.022935 GCATCACTGAATCAACAAGGAACA 60.023 41.667 0.00 0.00 0.00 3.18
2623 2956 2.455674 AGTGCAGTATCAGTTCGCAA 57.544 45.000 0.00 0.00 33.76 4.85
2681 3015 5.936372 TGGAGTACAGTACAGTACAGTAGTG 59.064 44.000 25.01 24.12 45.25 2.74
2787 3130 1.134521 GTGGGCATCTCCGATTGTACA 60.135 52.381 0.00 0.00 34.94 2.90
2796 3139 1.065491 TGTGTGTATGTGGGCATCTCC 60.065 52.381 0.00 0.00 36.58 3.71
2831 3174 1.660607 GATAGGATGTGCGTGTGTGTG 59.339 52.381 0.00 0.00 0.00 3.82
2839 3194 2.417924 GCTCATAGGGATAGGATGTGCG 60.418 54.545 0.00 0.00 0.00 5.34
2845 3200 3.637821 AAGGTGCTCATAGGGATAGGA 57.362 47.619 0.00 0.00 0.00 2.94
2893 3252 1.068885 AGCTTCAACTCTGTCGACGAG 60.069 52.381 25.46 25.46 34.70 4.18
2903 3262 1.597742 TGACCAAGCAGCTTCAACTC 58.402 50.000 4.07 0.00 0.00 3.01
2907 3266 0.321346 TCGATGACCAAGCAGCTTCA 59.679 50.000 4.07 0.41 0.00 3.02
2922 3281 2.284150 CAGTCAAACACACAACGTCGAT 59.716 45.455 0.00 0.00 0.00 3.59
2924 3283 1.392168 ACAGTCAAACACACAACGTCG 59.608 47.619 0.00 0.00 0.00 5.12
2929 3288 2.297315 TGCCAAACAGTCAAACACACAA 59.703 40.909 0.00 0.00 0.00 3.33
2936 3295 0.313672 GCCGATGCCAAACAGTCAAA 59.686 50.000 0.00 0.00 0.00 2.69
2960 3319 3.553095 AACAAGGGTCGAGGCCTGC 62.553 63.158 12.00 0.00 0.00 4.85
2972 3331 1.007387 GCCTTCACCGCAAACAAGG 60.007 57.895 0.00 0.00 38.82 3.61
2996 3355 2.125673 CCACCATCGACGACCACC 60.126 66.667 0.00 0.00 0.00 4.61
2999 3358 1.139095 GACTCCACCATCGACGACC 59.861 63.158 0.00 0.00 0.00 4.79
3032 3391 2.031616 ATCGCCATCATGCCTCCG 59.968 61.111 0.00 0.00 0.00 4.63
3038 3397 1.501337 CCGGTGTCATCGCCATCATG 61.501 60.000 0.00 0.00 43.79 3.07
3039 3398 1.227645 CCGGTGTCATCGCCATCAT 60.228 57.895 0.00 0.00 43.79 2.45
3103 3462 1.950973 AACGCCCGCAAAAACAAGGT 61.951 50.000 0.00 0.00 0.00 3.50
3141 3500 7.420002 AGTTGTCCAGTTAATTAACGGAAAAC 58.580 34.615 34.32 34.32 45.12 2.43
3146 3505 6.164176 AGAGAGTTGTCCAGTTAATTAACGG 58.836 40.000 22.56 22.56 40.96 4.44
3150 3509 7.660208 GGTTGAAGAGAGTTGTCCAGTTAATTA 59.340 37.037 0.00 0.00 0.00 1.40
3157 3516 3.760580 AGGTTGAAGAGAGTTGTCCAG 57.239 47.619 0.00 0.00 0.00 3.86
3173 3532 7.234355 AGTGTCTGATCCATTAAAGAAAGGTT 58.766 34.615 0.00 0.00 0.00 3.50
3180 3539 6.763610 GTCCCTTAGTGTCTGATCCATTAAAG 59.236 42.308 0.00 0.00 0.00 1.85
3194 3553 1.349688 TGAAATGCGGTCCCTTAGTGT 59.650 47.619 0.00 0.00 0.00 3.55
3196 3555 2.224670 TGTTGAAATGCGGTCCCTTAGT 60.225 45.455 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.