Multiple sequence alignment - TraesCS5B01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G287800 chr5B 100.000 3580 0 0 1 3580 473666024 473662445 0.000000e+00 6612.0
1 TraesCS5B01G287800 chr5B 82.851 1866 284 24 850 2693 473192877 473194728 0.000000e+00 1640.0
2 TraesCS5B01G287800 chr5B 85.017 1188 168 9 1406 2589 457396491 457397672 0.000000e+00 1199.0
3 TraesCS5B01G287800 chr5B 79.093 1631 297 24 967 2567 473284872 473286488 0.000000e+00 1083.0
4 TraesCS5B01G287800 chr5B 85.034 882 121 10 1398 2276 471134999 471135872 0.000000e+00 887.0
5 TraesCS5B01G287800 chr5B 84.584 493 61 9 850 1341 457395981 457396459 3.230000e-130 475.0
6 TraesCS5B01G287800 chr5B 85.256 468 60 8 875 1341 471134516 471134975 1.160000e-129 473.0
7 TraesCS5B01G287800 chr5B 81.769 373 58 6 481 852 473192478 473192841 1.620000e-78 303.0
8 TraesCS5B01G287800 chr5B 90.498 221 17 1 3298 3518 144474108 144474324 4.520000e-74 289.0
9 TraesCS5B01G287800 chr5A 94.620 2844 98 15 6 2835 495880776 495877974 0.000000e+00 4353.0
10 TraesCS5B01G287800 chr5A 83.050 2000 303 26 850 2835 495327050 495329027 0.000000e+00 1783.0
11 TraesCS5B01G287800 chr5A 79.291 1637 285 37 967 2567 495333716 495335334 0.000000e+00 1096.0
12 TraesCS5B01G287800 chr5A 82.222 315 49 3 481 793 495326615 495326924 7.620000e-67 265.0
13 TraesCS5B01G287800 chr5D 95.246 1893 70 9 949 2835 393849350 393847472 0.000000e+00 2979.0
14 TraesCS5B01G287800 chr5D 94.453 1893 87 9 949 2835 393815024 393813144 0.000000e+00 2898.0
15 TraesCS5B01G287800 chr5D 82.783 1847 277 25 1002 2832 393555079 393556900 0.000000e+00 1611.0
16 TraesCS5B01G287800 chr5D 93.494 953 37 8 1 945 393871206 393870271 0.000000e+00 1393.0
17 TraesCS5B01G287800 chr5D 85.017 1188 168 9 1406 2589 381564939 381566120 0.000000e+00 1199.0
18 TraesCS5B01G287800 chr5D 79.144 1635 292 28 967 2567 393559612 393561231 0.000000e+00 1085.0
19 TraesCS5B01G287800 chr5D 85.288 469 59 9 875 1341 390706968 390707428 3.230000e-130 475.0
20 TraesCS5B01G287800 chr5D 83.439 314 45 4 481 793 393552818 393553125 5.850000e-73 285.0
21 TraesCS5B01G287800 chr5D 93.750 80 5 0 866 945 393870196 393870117 1.750000e-23 121.0
22 TraesCS5B01G287800 chr5D 88.679 53 3 3 695 746 381695833 381695883 1.070000e-05 62.1
23 TraesCS5B01G287800 chr3B 99.284 419 1 2 2865 3282 201506571 201506988 0.000000e+00 756.0
24 TraesCS5B01G287800 chr3B 95.122 41 1 1 2829 2869 535621488 535621449 2.980000e-06 63.9
25 TraesCS5B01G287800 chr3B 90.909 44 4 0 2822 2865 732832336 732832379 3.860000e-05 60.2
26 TraesCS5B01G287800 chr1B 88.612 641 43 14 56 687 6411306 6411925 0.000000e+00 752.0
27 TraesCS5B01G287800 chrUn 99.043 418 2 2 2865 3281 53261644 53261228 0.000000e+00 749.0
28 TraesCS5B01G287800 chrUn 98.807 419 4 1 2865 3282 404958229 404958647 0.000000e+00 745.0
29 TraesCS5B01G287800 chr2A 98.329 419 5 2 2865 3282 335826272 335826689 0.000000e+00 734.0
30 TraesCS5B01G287800 chr2A 97.136 419 10 2 2865 3282 276441081 276440664 0.000000e+00 706.0
31 TraesCS5B01G287800 chr1A 98.091 419 7 1 2865 3282 256026174 256025756 0.000000e+00 728.0
32 TraesCS5B01G287800 chr2D 98.091 419 5 3 2865 3282 334225915 334226331 0.000000e+00 726.0
33 TraesCS5B01G287800 chr7A 96.651 418 11 3 2865 3281 642329954 642330369 0.000000e+00 691.0
34 TraesCS5B01G287800 chr7D 96.163 417 14 2 2866 3281 88605581 88605996 0.000000e+00 680.0
35 TraesCS5B01G287800 chr7D 93.525 278 18 0 3303 3580 277707935 277707658 7.150000e-112 414.0
36 TraesCS5B01G287800 chr1D 85.335 641 45 15 56 687 15182791 15183391 5.080000e-173 617.0
37 TraesCS5B01G287800 chr2B 97.880 283 6 0 3298 3580 5069344 5069062 1.160000e-134 490.0
38 TraesCS5B01G287800 chr2B 95.053 283 14 0 3298 3580 451633738 451633456 2.540000e-121 446.0
39 TraesCS5B01G287800 chr2B 93.286 283 19 0 3298 3580 644375820 644375538 5.530000e-113 418.0
40 TraesCS5B01G287800 chr2B 100.000 35 0 0 2834 2868 74209965 74209999 8.300000e-07 65.8
41 TraesCS5B01G287800 chr2B 97.368 38 1 0 2832 2869 122751794 122751757 8.300000e-07 65.8
42 TraesCS5B01G287800 chr7B 94.035 285 14 3 3298 3580 748023908 748024191 2.550000e-116 429.0
43 TraesCS5B01G287800 chr7B 92.883 281 16 4 3302 3580 24413134 24412856 4.300000e-109 405.0
44 TraesCS5B01G287800 chr7B 100.000 36 0 0 2834 2869 505359973 505359938 2.310000e-07 67.6
45 TraesCS5B01G287800 chr3A 92.419 277 19 2 3298 3574 81697197 81697471 9.320000e-106 394.0
46 TraesCS5B01G287800 chr3A 91.575 273 21 2 3302 3574 108621633 108621903 3.370000e-100 375.0
47 TraesCS5B01G287800 chr3A 80.842 475 41 14 46 513 227066211 227066642 9.580000e-86 327.0
48 TraesCS5B01G287800 chr6A 90.253 277 25 2 3298 3574 270701997 270701723 9.450000e-96 361.0
49 TraesCS5B01G287800 chr4B 97.500 40 0 1 2827 2865 298921639 298921678 2.310000e-07 67.6
50 TraesCS5B01G287800 chr4B 97.500 40 0 1 2827 2865 299036385 299036424 2.310000e-07 67.6
51 TraesCS5B01G287800 chr6D 95.122 41 2 0 2829 2869 308581037 308581077 8.300000e-07 65.8
52 TraesCS5B01G287800 chr4A 95.122 41 1 1 2825 2865 659651762 659651801 2.980000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G287800 chr5B 473662445 473666024 3579 True 6612.000000 6612 100.000000 1 3580 1 chr5B.!!$R1 3579
1 TraesCS5B01G287800 chr5B 473284872 473286488 1616 False 1083.000000 1083 79.093000 967 2567 1 chr5B.!!$F2 1600
2 TraesCS5B01G287800 chr5B 473192478 473194728 2250 False 971.500000 1640 82.310000 481 2693 2 chr5B.!!$F5 2212
3 TraesCS5B01G287800 chr5B 457395981 457397672 1691 False 837.000000 1199 84.800500 850 2589 2 chr5B.!!$F3 1739
4 TraesCS5B01G287800 chr5B 471134516 471135872 1356 False 680.000000 887 85.145000 875 2276 2 chr5B.!!$F4 1401
5 TraesCS5B01G287800 chr5A 495877974 495880776 2802 True 4353.000000 4353 94.620000 6 2835 1 chr5A.!!$R1 2829
6 TraesCS5B01G287800 chr5A 495333716 495335334 1618 False 1096.000000 1096 79.291000 967 2567 1 chr5A.!!$F1 1600
7 TraesCS5B01G287800 chr5A 495326615 495329027 2412 False 1024.000000 1783 82.636000 481 2835 2 chr5A.!!$F2 2354
8 TraesCS5B01G287800 chr5D 393847472 393849350 1878 True 2979.000000 2979 95.246000 949 2835 1 chr5D.!!$R2 1886
9 TraesCS5B01G287800 chr5D 393813144 393815024 1880 True 2898.000000 2898 94.453000 949 2835 1 chr5D.!!$R1 1886
10 TraesCS5B01G287800 chr5D 381564939 381566120 1181 False 1199.000000 1199 85.017000 1406 2589 1 chr5D.!!$F1 1183
11 TraesCS5B01G287800 chr5D 393552818 393561231 8413 False 993.666667 1611 81.788667 481 2832 3 chr5D.!!$F4 2351
12 TraesCS5B01G287800 chr5D 393870117 393871206 1089 True 757.000000 1393 93.622000 1 945 2 chr5D.!!$R3 944
13 TraesCS5B01G287800 chr1B 6411306 6411925 619 False 752.000000 752 88.612000 56 687 1 chr1B.!!$F1 631
14 TraesCS5B01G287800 chr1D 15182791 15183391 600 False 617.000000 617 85.335000 56 687 1 chr1D.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 976 0.106569 ATCATGCCATCCTTCCGCAA 60.107 50.000 0.0 0.0 35.85 4.85 F
895 982 2.024414 GCCATCCTTCCGCAACTTAAT 58.976 47.619 0.0 0.0 0.00 1.40 F
1645 3419 3.385111 CCTTTGCCTAGAGATACCTCGTT 59.615 47.826 0.0 0.0 44.08 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 3907 1.331756 GCAAGGTGAACAGTGACTGTG 59.668 52.381 20.19 5.87 44.62 3.66 R
2127 3909 1.667236 TGCAAGGTGAACAGTGACTG 58.333 50.000 11.70 11.70 37.52 3.51 R
3434 6938 0.106419 TTTGACCCCTTCGTTGCCTT 60.106 50.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 268 9.974750 GCTTTAGTGTTTAGTGATTACTCAATC 57.025 33.333 0.00 0.00 40.92 2.67
273 279 5.355071 GTGATTACTCAATCTTGTGCCATCA 59.645 40.000 0.00 4.05 41.09 3.07
274 280 5.355071 TGATTACTCAATCTTGTGCCATCAC 59.645 40.000 0.00 0.00 41.09 3.06
275 281 2.440409 ACTCAATCTTGTGCCATCACC 58.560 47.619 0.00 0.00 42.46 4.02
276 282 1.747355 CTCAATCTTGTGCCATCACCC 59.253 52.381 0.00 0.00 42.46 4.61
277 283 1.075212 TCAATCTTGTGCCATCACCCA 59.925 47.619 0.00 0.00 42.46 4.51
278 284 2.104967 CAATCTTGTGCCATCACCCAT 58.895 47.619 0.00 0.00 42.46 4.00
279 285 1.771565 ATCTTGTGCCATCACCCATG 58.228 50.000 0.00 0.00 42.46 3.66
321 327 7.216920 TGAACTGTATTTGTTCGTATCATCG 57.783 36.000 0.00 0.00 44.67 3.84
323 329 7.969508 TGAACTGTATTTGTTCGTATCATCGTA 59.030 33.333 0.00 0.00 44.67 3.43
324 330 7.675270 ACTGTATTTGTTCGTATCATCGTAC 57.325 36.000 0.00 0.00 0.00 3.67
346 352 8.181573 CGTACATGTTTTTAGGTGATGCTTATT 58.818 33.333 2.30 0.00 0.00 1.40
404 417 2.765699 ACATTTGCCACTGGTTCTTGTT 59.234 40.909 0.00 0.00 0.00 2.83
428 441 2.485426 CACAAATGATCCAACTCTGCGT 59.515 45.455 0.00 0.00 0.00 5.24
447 460 0.391228 TGCACTAGTTCGTTCCTGCA 59.609 50.000 0.00 0.00 32.35 4.41
477 494 3.866651 ACTCTGTGCTAATCATGACACC 58.133 45.455 10.65 0.00 31.98 4.16
507 524 1.466856 TTGCAGATGGACAGATTGCC 58.533 50.000 0.00 0.00 33.98 4.52
552 569 1.946475 GCTCACCCTACCGACAGGAC 61.946 65.000 4.01 0.00 41.02 3.85
734 754 0.321671 TGCTGCACCTAACTCTCCAC 59.678 55.000 0.00 0.00 0.00 4.02
746 766 3.477210 ACTCTCCACCAGAAAACTGTC 57.523 47.619 0.00 0.00 0.00 3.51
768 788 1.284408 CGAGCTCTAGATCCACCGC 59.716 63.158 12.85 0.00 0.00 5.68
869 956 8.520351 GTTTTTCTTAGCCTTGGCTAATTAGAA 58.480 33.333 27.83 24.19 32.70 2.10
886 973 2.579873 AGAAATCATGCCATCCTTCCG 58.420 47.619 0.00 0.00 0.00 4.30
889 976 0.106569 ATCATGCCATCCTTCCGCAA 60.107 50.000 0.00 0.00 35.85 4.85
895 982 2.024414 GCCATCCTTCCGCAACTTAAT 58.976 47.619 0.00 0.00 0.00 1.40
901 988 4.145807 TCCTTCCGCAACTTAATTCCAAA 58.854 39.130 0.00 0.00 0.00 3.28
1146 2920 5.811613 TGAAACAATGTGCTCCAAAGAAAAG 59.188 36.000 0.00 0.00 0.00 2.27
1194 2968 8.808529 CCGAATGTTATAAGAGACTACAACAAG 58.191 37.037 0.00 0.00 30.48 3.16
1624 3398 9.330063 TGAGACTTCAATATTGTTATGACATCC 57.670 33.333 14.97 0.00 35.29 3.51
1645 3419 3.385111 CCTTTGCCTAGAGATACCTCGTT 59.615 47.826 0.00 0.00 44.08 3.85
1719 3496 8.844244 GTGTTAGAGATCAATGCTCCAAATATT 58.156 33.333 0.00 0.00 32.82 1.28
1806 3583 3.758554 ACCTGATGTTGAACAATAGGTGC 59.241 43.478 25.98 4.31 42.81 5.01
1983 3765 4.018490 TGCAGATAATCAATGCACCAGTT 58.982 39.130 0.00 0.00 44.56 3.16
2003 3785 7.657761 ACCAGTTATATCTAGCAAATTTCTCCG 59.342 37.037 0.00 0.00 0.00 4.63
2111 3893 5.124617 CCTCTACTTCCTTGGAGAAATTTGC 59.875 44.000 0.00 0.00 0.00 3.68
2122 3904 7.309744 CCTTGGAGAAATTTGCCTTGTATGTAA 60.310 37.037 0.00 0.00 0.00 2.41
2123 3905 7.156876 TGGAGAAATTTGCCTTGTATGTAAG 57.843 36.000 0.00 0.00 0.00 2.34
2124 3906 6.719370 TGGAGAAATTTGCCTTGTATGTAAGT 59.281 34.615 0.00 0.00 0.00 2.24
2125 3907 7.094377 TGGAGAAATTTGCCTTGTATGTAAGTC 60.094 37.037 0.00 0.00 0.00 3.01
2126 3908 7.094377 GGAGAAATTTGCCTTGTATGTAAGTCA 60.094 37.037 0.00 0.00 0.00 3.41
2127 3909 7.593825 AGAAATTTGCCTTGTATGTAAGTCAC 58.406 34.615 0.00 0.00 0.00 3.67
2315 4126 0.901124 AGAGTGTGGAGATCACTGGC 59.099 55.000 3.29 0.00 44.68 4.85
2507 4321 5.316167 TCAGTCTTGGCTGTGAAAACATAT 58.684 37.500 2.03 0.00 37.70 1.78
2618 4432 8.991243 AATCATCATGGTTGTTCAATGTTAAG 57.009 30.769 0.00 0.00 0.00 1.85
2732 4560 6.686630 TGGCAAACTGTCCAATTTATGTAAG 58.313 36.000 0.00 0.00 0.00 2.34
2798 4628 9.248291 AGTTTATAATTTTTGTGACTTGCAGTG 57.752 29.630 0.00 0.00 0.00 3.66
2878 4708 9.883142 GAAAATTGGGTTTATGGAATACAATCA 57.117 29.630 0.00 0.00 30.81 2.57
2879 4709 9.889128 AAAATTGGGTTTATGGAATACAATCAG 57.111 29.630 0.00 0.00 30.81 2.90
2880 4710 8.608185 AATTGGGTTTATGGAATACAATCAGT 57.392 30.769 0.00 0.00 30.81 3.41
2881 4711 8.608185 ATTGGGTTTATGGAATACAATCAGTT 57.392 30.769 0.00 0.00 0.00 3.16
2883 4713 9.535170 TTGGGTTTATGGAATACAATCAGTTAA 57.465 29.630 0.00 0.00 0.00 2.01
2884 4714 9.535170 TGGGTTTATGGAATACAATCAGTTAAA 57.465 29.630 0.00 0.00 0.00 1.52
2901 4731 9.868160 ATCAGTTAAAATAAGAAGGAATAGGGG 57.132 33.333 0.00 0.00 0.00 4.79
2902 4732 9.064602 TCAGTTAAAATAAGAAGGAATAGGGGA 57.935 33.333 0.00 0.00 0.00 4.81
2903 4733 9.695155 CAGTTAAAATAAGAAGGAATAGGGGAA 57.305 33.333 0.00 0.00 0.00 3.97
2911 4741 7.575499 AAGAAGGAATAGGGGAATATTCGAT 57.425 36.000 9.32 0.78 41.24 3.59
2912 4742 7.189079 AGAAGGAATAGGGGAATATTCGATC 57.811 40.000 9.32 2.09 41.24 3.69
2914 4744 5.024118 AGGAATAGGGGAATATTCGATCGT 58.976 41.667 15.94 0.00 41.24 3.73
2915 4745 5.484290 AGGAATAGGGGAATATTCGATCGTT 59.516 40.000 15.94 6.78 41.24 3.85
2917 4747 5.995565 ATAGGGGAATATTCGATCGTTCA 57.004 39.130 15.94 0.68 0.00 3.18
2919 4749 3.641906 AGGGGAATATTCGATCGTTCACT 59.358 43.478 15.94 10.16 0.00 3.41
2922 4752 4.500887 GGGAATATTCGATCGTTCACTCCA 60.501 45.833 15.94 0.00 0.00 3.86
2923 4753 5.047847 GGAATATTCGATCGTTCACTCCAA 58.952 41.667 15.94 0.00 0.00 3.53
2924 4754 5.522460 GGAATATTCGATCGTTCACTCCAAA 59.478 40.000 15.94 0.00 0.00 3.28
2925 4755 6.036735 GGAATATTCGATCGTTCACTCCAAAA 59.963 38.462 15.94 0.00 0.00 2.44
2926 4756 6.978343 ATATTCGATCGTTCACTCCAAAAA 57.022 33.333 15.94 0.00 0.00 1.94
2927 4757 4.725556 TTCGATCGTTCACTCCAAAAAG 57.274 40.909 15.94 0.00 0.00 2.27
2928 4758 3.985008 TCGATCGTTCACTCCAAAAAGA 58.015 40.909 15.94 0.00 0.00 2.52
2929 4759 3.987868 TCGATCGTTCACTCCAAAAAGAG 59.012 43.478 15.94 0.00 39.91 2.85
2935 4765 2.418669 TCACTCCAAAAAGAGGGTCCT 58.581 47.619 0.00 0.00 38.51 3.85
2936 4766 3.593942 TCACTCCAAAAAGAGGGTCCTA 58.406 45.455 0.00 0.00 38.51 2.94
2937 4767 4.175962 TCACTCCAAAAAGAGGGTCCTAT 58.824 43.478 0.00 0.00 38.51 2.57
2938 4768 4.601857 TCACTCCAAAAAGAGGGTCCTATT 59.398 41.667 0.00 0.00 38.51 1.73
2939 4769 4.702131 CACTCCAAAAAGAGGGTCCTATTG 59.298 45.833 0.00 0.00 38.26 1.90
2940 4770 4.601857 ACTCCAAAAAGAGGGTCCTATTGA 59.398 41.667 0.00 0.00 38.26 2.57
2941 4771 5.074515 ACTCCAAAAAGAGGGTCCTATTGAA 59.925 40.000 0.00 0.00 38.26 2.69
2942 4772 5.959512 TCCAAAAAGAGGGTCCTATTGAAA 58.040 37.500 0.00 0.00 0.00 2.69
2943 4773 6.377912 TCCAAAAAGAGGGTCCTATTGAAAA 58.622 36.000 0.00 0.00 0.00 2.29
2944 4774 6.841755 TCCAAAAAGAGGGTCCTATTGAAAAA 59.158 34.615 0.00 0.00 0.00 1.94
2945 4775 7.015195 TCCAAAAAGAGGGTCCTATTGAAAAAG 59.985 37.037 0.00 0.00 0.00 2.27
2946 4776 7.015195 CCAAAAAGAGGGTCCTATTGAAAAAGA 59.985 37.037 0.00 0.00 0.00 2.52
2947 4777 8.421002 CAAAAAGAGGGTCCTATTGAAAAAGAA 58.579 33.333 0.00 0.00 0.00 2.52
2948 4778 8.547481 AAAAGAGGGTCCTATTGAAAAAGAAA 57.453 30.769 0.00 0.00 0.00 2.52
2949 4779 8.727100 AAAGAGGGTCCTATTGAAAAAGAAAT 57.273 30.769 0.00 0.00 0.00 2.17
2950 4780 8.727100 AAGAGGGTCCTATTGAAAAAGAAATT 57.273 30.769 0.00 0.00 0.00 1.82
2951 4781 9.822727 AAGAGGGTCCTATTGAAAAAGAAATTA 57.177 29.630 0.00 0.00 0.00 1.40
2952 4782 9.997172 AGAGGGTCCTATTGAAAAAGAAATTAT 57.003 29.630 0.00 0.00 0.00 1.28
3060 5924 7.789202 TTTTTCATTCAATGGGGTTAGATGA 57.211 32.000 0.00 0.00 0.00 2.92
3061 5925 7.976414 TTTTCATTCAATGGGGTTAGATGAT 57.024 32.000 0.00 0.00 0.00 2.45
3062 5926 7.587037 TTTCATTCAATGGGGTTAGATGATC 57.413 36.000 0.00 0.00 0.00 2.92
3063 5927 6.520021 TCATTCAATGGGGTTAGATGATCT 57.480 37.500 0.00 0.00 0.00 2.75
3064 5928 6.301486 TCATTCAATGGGGTTAGATGATCTG 58.699 40.000 4.96 0.00 0.00 2.90
3065 5929 5.715439 TTCAATGGGGTTAGATGATCTGT 57.285 39.130 4.96 0.00 0.00 3.41
3066 5930 5.715439 TCAATGGGGTTAGATGATCTGTT 57.285 39.130 4.96 0.00 0.00 3.16
3068 5932 5.429762 TCAATGGGGTTAGATGATCTGTTCT 59.570 40.000 4.96 0.00 0.00 3.01
3069 5933 5.983333 ATGGGGTTAGATGATCTGTTCTT 57.017 39.130 4.96 0.00 0.00 2.52
3070 5934 7.127186 TCAATGGGGTTAGATGATCTGTTCTTA 59.873 37.037 4.96 0.00 0.00 2.10
3071 5935 6.884472 TGGGGTTAGATGATCTGTTCTTAA 57.116 37.500 4.96 0.00 0.00 1.85
3103 5967 9.959749 TTACTTTACTCAATTGACAAATTCCAC 57.040 29.630 3.38 0.00 33.59 4.02
3104 5968 8.006298 ACTTTACTCAATTGACAAATTCCACA 57.994 30.769 3.38 0.00 33.59 4.17
3105 5969 8.474025 ACTTTACTCAATTGACAAATTCCACAA 58.526 29.630 3.38 0.00 33.59 3.33
3106 5970 8.641499 TTTACTCAATTGACAAATTCCACAAC 57.359 30.769 3.38 0.00 33.59 3.32
3108 5972 6.638610 ACTCAATTGACAAATTCCACAACAA 58.361 32.000 3.38 0.00 33.59 2.83
3110 5974 7.769970 ACTCAATTGACAAATTCCACAACAAAT 59.230 29.630 3.38 0.00 33.59 2.32
3114 5978 6.713762 TGACAAATTCCACAACAAATCTCT 57.286 33.333 0.00 0.00 0.00 3.10
3116 5980 6.979817 TGACAAATTCCACAACAAATCTCTTG 59.020 34.615 0.00 0.00 0.00 3.02
3117 5981 7.111247 ACAAATTCCACAACAAATCTCTTGA 57.889 32.000 0.00 0.00 0.00 3.02
3118 5982 7.729116 ACAAATTCCACAACAAATCTCTTGAT 58.271 30.769 0.00 0.00 33.70 2.57
3119 5983 8.206189 ACAAATTCCACAACAAATCTCTTGATT 58.794 29.630 0.00 0.00 44.08 2.57
3121 5985 6.957920 TTCCACAACAAATCTCTTGATTCA 57.042 33.333 0.00 0.00 41.62 2.57
3122 5986 6.564709 TCCACAACAAATCTCTTGATTCAG 57.435 37.500 0.00 0.00 41.62 3.02
3124 5988 6.772233 TCCACAACAAATCTCTTGATTCAGAA 59.228 34.615 0.00 0.00 41.62 3.02
3129 5993 9.784680 CAACAAATCTCTTGATTCAGAATTAGG 57.215 33.333 0.00 0.00 41.62 2.69
3130 5994 8.517062 ACAAATCTCTTGATTCAGAATTAGGG 57.483 34.615 0.00 0.00 41.62 3.53
3132 5996 8.619546 CAAATCTCTTGATTCAGAATTAGGGAC 58.380 37.037 9.75 0.00 41.62 4.46
3133 5997 7.688918 ATCTCTTGATTCAGAATTAGGGACT 57.311 36.000 9.75 0.94 46.37 3.85
3135 5999 6.669591 TCTCTTGATTCAGAATTAGGGACTCA 59.330 38.462 0.00 0.00 41.75 3.41
3136 6000 7.346698 TCTCTTGATTCAGAATTAGGGACTCAT 59.653 37.037 0.00 0.00 41.75 2.90
3137 6001 7.278135 TCTTGATTCAGAATTAGGGACTCATG 58.722 38.462 0.00 0.00 41.75 3.07
3138 6002 6.566079 TGATTCAGAATTAGGGACTCATGT 57.434 37.500 0.00 0.00 41.75 3.21
3139 6003 7.675161 TGATTCAGAATTAGGGACTCATGTA 57.325 36.000 0.00 0.00 41.75 2.29
3141 6005 8.370940 TGATTCAGAATTAGGGACTCATGTATC 58.629 37.037 0.00 0.00 41.75 2.24
3142 6006 7.675161 TTCAGAATTAGGGACTCATGTATCA 57.325 36.000 0.00 0.00 41.75 2.15
3144 6008 7.901029 TCAGAATTAGGGACTCATGTATCATC 58.099 38.462 0.00 0.00 41.75 2.92
3145 6009 7.732140 TCAGAATTAGGGACTCATGTATCATCT 59.268 37.037 0.00 0.00 41.75 2.90
3146 6010 7.818446 CAGAATTAGGGACTCATGTATCATCTG 59.182 40.741 0.00 0.00 41.75 2.90
3147 6011 7.732140 AGAATTAGGGACTCATGTATCATCTGA 59.268 37.037 0.00 0.00 41.75 3.27
3148 6012 8.446714 AATTAGGGACTCATGTATCATCTGAT 57.553 34.615 0.00 0.00 41.75 2.90
3149 6013 5.741962 AGGGACTCATGTATCATCTGATG 57.258 43.478 11.42 11.42 36.05 3.07
3150 6014 5.400870 AGGGACTCATGTATCATCTGATGA 58.599 41.667 21.55 21.55 44.55 2.92
3153 6017 6.817641 GGGACTCATGTATCATCTGATGAATC 59.182 42.308 22.91 17.87 43.50 2.52
3154 6018 6.817641 GGACTCATGTATCATCTGATGAATCC 59.182 42.308 22.91 14.01 43.50 3.01
3155 6019 7.312415 ACTCATGTATCATCTGATGAATCCA 57.688 36.000 22.91 18.37 43.50 3.41
3156 6020 7.160049 ACTCATGTATCATCTGATGAATCCAC 58.840 38.462 22.91 17.31 43.50 4.02
3157 6021 7.016366 ACTCATGTATCATCTGATGAATCCACT 59.984 37.037 22.91 9.09 43.50 4.00
3158 6022 7.742767 TCATGTATCATCTGATGAATCCACTT 58.257 34.615 22.91 13.35 43.50 3.16
3159 6023 8.215736 TCATGTATCATCTGATGAATCCACTTT 58.784 33.333 22.91 7.74 43.50 2.66
3160 6024 8.504815 CATGTATCATCTGATGAATCCACTTTC 58.495 37.037 22.91 4.94 43.50 2.62
3161 6025 7.799081 TGTATCATCTGATGAATCCACTTTCT 58.201 34.615 22.91 6.40 43.50 2.52
3162 6026 8.270030 TGTATCATCTGATGAATCCACTTTCTT 58.730 33.333 22.91 5.92 43.50 2.52
3163 6027 9.118300 GTATCATCTGATGAATCCACTTTCTTT 57.882 33.333 22.91 5.74 43.50 2.52
3164 6028 8.591114 ATCATCTGATGAATCCACTTTCTTTT 57.409 30.769 22.91 0.04 43.50 2.27
3166 6030 8.950210 TCATCTGATGAATCCACTTTCTTTTAC 58.050 33.333 17.56 0.00 36.11 2.01
3167 6031 8.733458 CATCTGATGAATCCACTTTCTTTTACA 58.267 33.333 12.27 0.00 0.00 2.41
3168 6032 8.099364 TCTGATGAATCCACTTTCTTTTACAC 57.901 34.615 0.00 0.00 0.00 2.90
3171 6035 8.567948 TGATGAATCCACTTTCTTTTACACTTC 58.432 33.333 0.00 0.00 0.00 3.01
3172 6036 8.697507 ATGAATCCACTTTCTTTTACACTTCT 57.302 30.769 0.00 0.00 0.00 2.85
3173 6037 7.930217 TGAATCCACTTTCTTTTACACTTCTG 58.070 34.615 0.00 0.00 0.00 3.02
3174 6038 7.556275 TGAATCCACTTTCTTTTACACTTCTGT 59.444 33.333 0.00 0.00 0.00 3.41
3175 6039 8.974060 AATCCACTTTCTTTTACACTTCTGTA 57.026 30.769 0.00 0.00 0.00 2.74
3176 6040 9.574516 AATCCACTTTCTTTTACACTTCTGTAT 57.425 29.630 0.00 0.00 32.70 2.29
3177 6041 8.603242 TCCACTTTCTTTTACACTTCTGTATC 57.397 34.615 0.00 0.00 32.70 2.24
3179 6043 9.057089 CCACTTTCTTTTACACTTCTGTATCTT 57.943 33.333 0.00 0.00 32.70 2.40
3270 6134 9.716507 GTAAATGCTTTACCAACATATGTAGTG 57.283 33.333 9.21 4.62 39.61 2.74
3271 6135 7.938140 AATGCTTTACCAACATATGTAGTGT 57.062 32.000 9.21 9.13 0.00 3.55
3273 6137 8.662781 ATGCTTTACCAACATATGTAGTGTAG 57.337 34.615 9.21 11.64 0.00 2.74
3274 6138 7.617225 TGCTTTACCAACATATGTAGTGTAGT 58.383 34.615 9.21 2.25 0.00 2.73
3275 6139 8.751242 TGCTTTACCAACATATGTAGTGTAGTA 58.249 33.333 9.21 8.30 0.00 1.82
3276 6140 9.590451 GCTTTACCAACATATGTAGTGTAGTAA 57.410 33.333 9.21 6.96 31.81 2.24
3302 6806 5.725551 AACCATACAATAATCCTCACCCA 57.274 39.130 0.00 0.00 0.00 4.51
3305 6809 5.891551 ACCATACAATAATCCTCACCCAAAC 59.108 40.000 0.00 0.00 0.00 2.93
3330 6834 2.508439 GCGAGGGCGATTCAACGA 60.508 61.111 0.00 0.00 40.82 3.85
3331 6835 2.098233 GCGAGGGCGATTCAACGAA 61.098 57.895 0.00 0.00 40.82 3.85
3334 6838 2.198406 CGAGGGCGATTCAACGAATTA 58.802 47.619 0.00 0.00 40.82 1.40
3335 6839 2.800544 CGAGGGCGATTCAACGAATTAT 59.199 45.455 0.00 0.00 40.82 1.28
3336 6840 3.985279 CGAGGGCGATTCAACGAATTATA 59.015 43.478 0.00 0.00 40.82 0.98
3337 6841 4.446385 CGAGGGCGATTCAACGAATTATAA 59.554 41.667 0.00 0.00 40.82 0.98
3338 6842 5.611844 CGAGGGCGATTCAACGAATTATAAC 60.612 44.000 0.00 0.00 40.82 1.89
3339 6843 4.514066 AGGGCGATTCAACGAATTATAACC 59.486 41.667 0.00 0.00 31.89 2.85
3340 6844 4.451557 GGCGATTCAACGAATTATAACCG 58.548 43.478 7.35 7.35 31.89 4.44
3341 6845 4.451557 GCGATTCAACGAATTATAACCGG 58.548 43.478 0.00 0.00 31.89 5.28
3343 6847 4.746115 CGATTCAACGAATTATAACCGGGA 59.254 41.667 6.32 0.00 31.89 5.14
3344 6848 5.407387 CGATTCAACGAATTATAACCGGGAT 59.593 40.000 6.32 0.48 31.89 3.85
3345 6849 6.400727 CGATTCAACGAATTATAACCGGGATC 60.401 42.308 6.32 5.75 31.89 3.36
3347 6851 5.672503 TCAACGAATTATAACCGGGATCAA 58.327 37.500 6.32 0.00 0.00 2.57
3348 6852 6.114089 TCAACGAATTATAACCGGGATCAAA 58.886 36.000 6.32 0.00 0.00 2.69
3349 6853 6.259167 TCAACGAATTATAACCGGGATCAAAG 59.741 38.462 6.32 0.00 0.00 2.77
3350 6854 5.061179 ACGAATTATAACCGGGATCAAAGG 58.939 41.667 6.32 0.00 0.00 3.11
3352 6856 5.761234 CGAATTATAACCGGGATCAAAGGAA 59.239 40.000 6.32 0.00 0.00 3.36
3354 6858 5.438698 TTATAACCGGGATCAAAGGAACA 57.561 39.130 6.32 0.00 0.00 3.18
3356 6860 2.668144 ACCGGGATCAAAGGAACAAA 57.332 45.000 6.32 0.00 0.00 2.83
3357 6861 3.169512 ACCGGGATCAAAGGAACAAAT 57.830 42.857 6.32 0.00 0.00 2.32
3360 6864 3.763897 CCGGGATCAAAGGAACAAATTCT 59.236 43.478 0.00 0.00 34.98 2.40
3361 6865 4.380867 CCGGGATCAAAGGAACAAATTCTG 60.381 45.833 0.00 0.00 34.98 3.02
3362 6866 4.458989 CGGGATCAAAGGAACAAATTCTGA 59.541 41.667 0.00 0.00 34.98 3.27
3364 6868 5.243730 GGGATCAAAGGAACAAATTCTGACA 59.756 40.000 0.00 0.00 34.98 3.58
3365 6869 6.239289 GGGATCAAAGGAACAAATTCTGACAA 60.239 38.462 0.00 0.00 34.98 3.18
3366 6870 6.642540 GGATCAAAGGAACAAATTCTGACAAC 59.357 38.462 0.00 0.00 34.98 3.32
3368 6872 5.355630 TCAAAGGAACAAATTCTGACAACGA 59.644 36.000 0.00 0.00 34.98 3.85
3369 6873 6.039270 TCAAAGGAACAAATTCTGACAACGAT 59.961 34.615 0.00 0.00 34.98 3.73
3370 6874 6.391227 AAGGAACAAATTCTGACAACGATT 57.609 33.333 0.00 0.00 34.98 3.34
3371 6875 6.391227 AGGAACAAATTCTGACAACGATTT 57.609 33.333 0.00 0.00 34.98 2.17
3372 6876 7.504924 AGGAACAAATTCTGACAACGATTTA 57.495 32.000 0.00 0.00 34.98 1.40
3373 6877 8.110860 AGGAACAAATTCTGACAACGATTTAT 57.889 30.769 0.00 0.00 34.98 1.40
3374 6878 9.226606 AGGAACAAATTCTGACAACGATTTATA 57.773 29.630 0.00 0.00 34.98 0.98
3375 6879 9.490663 GGAACAAATTCTGACAACGATTTATAG 57.509 33.333 0.00 0.00 34.98 1.31
3383 6887 8.561932 TCTGACAACGATTTATAGAAGATTCG 57.438 34.615 0.00 0.00 0.00 3.34
3385 6889 6.754675 TGACAACGATTTATAGAAGATTCGCA 59.245 34.615 0.00 0.00 0.00 5.10
3386 6890 6.934210 ACAACGATTTATAGAAGATTCGCAC 58.066 36.000 0.00 0.00 0.00 5.34
3388 6892 5.597806 ACGATTTATAGAAGATTCGCACCA 58.402 37.500 0.00 0.00 0.00 4.17
3389 6893 5.692204 ACGATTTATAGAAGATTCGCACCAG 59.308 40.000 0.00 0.00 0.00 4.00
3390 6894 5.119279 CGATTTATAGAAGATTCGCACCAGG 59.881 44.000 0.00 0.00 0.00 4.45
3391 6895 5.353394 TTTATAGAAGATTCGCACCAGGT 57.647 39.130 0.00 0.00 0.00 4.00
3393 6897 6.665992 TTATAGAAGATTCGCACCAGGTAT 57.334 37.500 0.00 0.00 0.00 2.73
3394 6898 3.185246 AGAAGATTCGCACCAGGTATG 57.815 47.619 0.00 0.00 0.00 2.39
3395 6899 2.766263 AGAAGATTCGCACCAGGTATGA 59.234 45.455 0.00 0.00 0.00 2.15
3399 6903 3.389329 AGATTCGCACCAGGTATGAGAAT 59.611 43.478 8.30 8.30 45.57 2.40
3400 6904 2.890808 TCGCACCAGGTATGAGAATC 57.109 50.000 0.00 0.00 0.00 2.52
3419 6923 9.511272 TGAGAATCAGATTCAGAAAAGAATGAA 57.489 29.630 22.70 0.00 42.56 2.57
3423 6927 7.806409 TCAGATTCAGAAAAGAATGAACACA 57.194 32.000 0.00 0.00 38.30 3.72
3424 6928 8.224389 TCAGATTCAGAAAAGAATGAACACAA 57.776 30.769 0.00 0.00 38.30 3.33
3427 6931 8.636213 AGATTCAGAAAAGAATGAACACAACAT 58.364 29.630 0.00 0.00 38.30 2.71
3428 6932 7.990541 TTCAGAAAAGAATGAACACAACATG 57.009 32.000 0.00 0.00 30.67 3.21
3429 6933 7.332213 TCAGAAAAGAATGAACACAACATGA 57.668 32.000 0.00 0.00 0.00 3.07
3430 6934 7.944061 TCAGAAAAGAATGAACACAACATGAT 58.056 30.769 0.00 0.00 0.00 2.45
3431 6935 7.863877 TCAGAAAAGAATGAACACAACATGATG 59.136 33.333 0.00 0.00 0.00 3.07
3434 6938 4.665451 AGAATGAACACAACATGATGGGA 58.335 39.130 12.76 0.00 0.00 4.37
3435 6939 5.078949 AGAATGAACACAACATGATGGGAA 58.921 37.500 12.76 0.00 0.00 3.97
3436 6940 5.184479 AGAATGAACACAACATGATGGGAAG 59.816 40.000 12.76 0.00 0.00 3.46
3438 6942 1.549203 ACACAACATGATGGGAAGGC 58.451 50.000 12.76 0.00 0.00 4.35
3439 6943 1.203038 ACACAACATGATGGGAAGGCA 60.203 47.619 12.76 0.00 0.00 4.75
3440 6944 1.894466 CACAACATGATGGGAAGGCAA 59.106 47.619 7.95 0.00 0.00 4.52
3441 6945 1.895131 ACAACATGATGGGAAGGCAAC 59.105 47.619 7.95 0.00 0.00 4.17
3442 6946 1.135315 CAACATGATGGGAAGGCAACG 60.135 52.381 0.00 0.00 46.39 4.10
3443 6947 0.327924 ACATGATGGGAAGGCAACGA 59.672 50.000 0.00 0.00 46.39 3.85
3444 6948 1.271871 ACATGATGGGAAGGCAACGAA 60.272 47.619 0.00 0.00 46.39 3.85
3445 6949 1.402968 CATGATGGGAAGGCAACGAAG 59.597 52.381 0.00 0.00 46.39 3.79
3447 6951 1.000896 ATGGGAAGGCAACGAAGGG 60.001 57.895 0.00 0.00 46.39 3.95
3448 6952 2.361230 GGGAAGGCAACGAAGGGG 60.361 66.667 0.00 0.00 46.39 4.79
3449 6953 2.434774 GGAAGGCAACGAAGGGGT 59.565 61.111 0.00 0.00 46.39 4.95
3450 6954 1.674651 GGAAGGCAACGAAGGGGTC 60.675 63.158 0.00 0.00 46.39 4.46
3451 6955 1.072505 GAAGGCAACGAAGGGGTCA 59.927 57.895 0.00 0.00 46.39 4.02
3453 6957 0.106419 AAGGCAACGAAGGGGTCAAA 60.106 50.000 0.00 0.00 46.39 2.69
3454 6958 0.112412 AGGCAACGAAGGGGTCAAAT 59.888 50.000 0.00 0.00 46.39 2.32
3455 6959 0.526211 GGCAACGAAGGGGTCAAATC 59.474 55.000 0.00 0.00 0.00 2.17
3456 6960 0.526211 GCAACGAAGGGGTCAAATCC 59.474 55.000 0.00 0.00 0.00 3.01
3458 6962 1.539827 CAACGAAGGGGTCAAATCCAC 59.460 52.381 0.00 0.00 0.00 4.02
3459 6963 0.768622 ACGAAGGGGTCAAATCCACA 59.231 50.000 0.00 0.00 32.43 4.17
3460 6964 1.165270 CGAAGGGGTCAAATCCACAC 58.835 55.000 0.00 0.00 32.43 3.82
3464 6968 4.536765 GAAGGGGTCAAATCCACACATAT 58.463 43.478 0.00 0.00 32.43 1.78
3465 6969 4.608170 AGGGGTCAAATCCACACATATT 57.392 40.909 0.00 0.00 32.43 1.28
3466 6970 4.536765 AGGGGTCAAATCCACACATATTC 58.463 43.478 0.00 0.00 32.43 1.75
3467 6971 3.315191 GGGGTCAAATCCACACATATTCG 59.685 47.826 0.00 0.00 0.00 3.34
3468 6972 4.196193 GGGTCAAATCCACACATATTCGA 58.804 43.478 0.00 0.00 0.00 3.71
3469 6973 4.638421 GGGTCAAATCCACACATATTCGAA 59.362 41.667 0.00 0.00 0.00 3.71
3471 6975 6.201517 GGTCAAATCCACACATATTCGAATG 58.798 40.000 20.87 9.06 0.00 2.67
3474 6978 8.773645 GTCAAATCCACACATATTCGAATGATA 58.226 33.333 20.87 0.78 0.00 2.15
3475 6979 9.336171 TCAAATCCACACATATTCGAATGATAA 57.664 29.630 20.87 0.37 0.00 1.75
3479 6983 8.900983 TCCACACATATTCGAATGATAATGAA 57.099 30.769 20.87 0.00 0.00 2.57
3489 6993 7.105494 TCGAATGATAATGAAATACGACAGC 57.895 36.000 0.00 0.00 0.00 4.40
3490 6994 6.699642 TCGAATGATAATGAAATACGACAGCA 59.300 34.615 0.00 0.00 0.00 4.41
3491 6995 6.787515 CGAATGATAATGAAATACGACAGCAC 59.212 38.462 0.00 0.00 0.00 4.40
3492 6996 5.984233 TGATAATGAAATACGACAGCACC 57.016 39.130 0.00 0.00 0.00 5.01
3493 6997 4.506288 TGATAATGAAATACGACAGCACCG 59.494 41.667 0.00 0.00 0.00 4.94
3494 6998 2.665649 ATGAAATACGACAGCACCGA 57.334 45.000 0.00 0.00 0.00 4.69
3495 6999 1.705256 TGAAATACGACAGCACCGAC 58.295 50.000 0.00 0.00 0.00 4.79
3496 7000 0.638746 GAAATACGACAGCACCGACG 59.361 55.000 0.00 0.00 0.00 5.12
3497 7001 0.241749 AAATACGACAGCACCGACGA 59.758 50.000 0.00 0.00 0.00 4.20
3498 7002 0.455633 AATACGACAGCACCGACGAC 60.456 55.000 0.00 0.00 0.00 4.34
3499 7003 2.573341 ATACGACAGCACCGACGACG 62.573 60.000 0.00 0.00 39.43 5.12
3510 7014 2.175078 GACGACGCGAGCACTGTA 59.825 61.111 15.93 0.00 0.00 2.74
3511 7015 1.863880 GACGACGCGAGCACTGTAG 60.864 63.158 15.93 0.00 0.00 2.74
3512 7016 2.176055 CGACGCGAGCACTGTAGT 59.824 61.111 15.93 0.00 0.00 2.73
3523 7027 2.065993 CACTGTAGTGTTGGAGACGG 57.934 55.000 3.88 0.00 40.96 4.79
3524 7028 0.966920 ACTGTAGTGTTGGAGACGGG 59.033 55.000 0.00 0.00 0.00 5.28
3526 7030 0.178955 TGTAGTGTTGGAGACGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
3527 7031 0.971386 GTAGTGTTGGAGACGGGGAA 59.029 55.000 0.00 0.00 0.00 3.97
3529 7033 1.003718 GTGTTGGAGACGGGGAAGG 60.004 63.158 0.00 0.00 0.00 3.46
3530 7034 2.221299 TGTTGGAGACGGGGAAGGG 61.221 63.158 0.00 0.00 0.00 3.95
3531 7035 3.327404 TTGGAGACGGGGAAGGGC 61.327 66.667 0.00 0.00 0.00 5.19
3532 7036 4.649705 TGGAGACGGGGAAGGGCA 62.650 66.667 0.00 0.00 0.00 5.36
3534 7038 4.452733 GAGACGGGGAAGGGCACG 62.453 72.222 0.00 0.00 0.00 5.34
3551 7055 4.699522 GGCGCTGTCCCGGTTCTT 62.700 66.667 7.64 0.00 0.00 2.52
3553 7057 3.423154 CGCTGTCCCGGTTCTTGC 61.423 66.667 0.00 0.00 0.00 4.01
3562 7066 2.539003 CGGTTCTTGCCGTGAATCA 58.461 52.632 0.00 0.00 46.11 2.57
3565 7069 2.728846 CGGTTCTTGCCGTGAATCATTG 60.729 50.000 0.00 0.00 46.11 2.82
3566 7070 2.487762 GGTTCTTGCCGTGAATCATTGA 59.512 45.455 0.00 0.00 0.00 2.57
3567 7071 3.426695 GGTTCTTGCCGTGAATCATTGAG 60.427 47.826 0.00 0.00 0.00 3.02
3568 7072 2.358957 TCTTGCCGTGAATCATTGAGG 58.641 47.619 0.00 0.00 0.00 3.86
3569 7073 2.027285 TCTTGCCGTGAATCATTGAGGA 60.027 45.455 0.00 0.00 0.00 3.71
3570 7074 2.028420 TGCCGTGAATCATTGAGGAG 57.972 50.000 0.00 0.00 0.00 3.69
3571 7075 1.303309 GCCGTGAATCATTGAGGAGG 58.697 55.000 0.00 0.00 0.00 4.30
3574 7078 2.484417 CCGTGAATCATTGAGGAGGAGG 60.484 54.545 0.00 0.00 0.00 4.30
3575 7079 2.432146 CGTGAATCATTGAGGAGGAGGA 59.568 50.000 0.00 0.00 0.00 3.71
3578 7082 1.433121 ATCATTGAGGAGGAGGAGCC 58.567 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 229 7.551262 TCACTAAACACTAAAGCTGAAACTGAA 59.449 33.333 0.00 0.00 0.00 3.02
273 279 2.496899 AATTTGAGCGACTCATGGGT 57.503 45.000 0.00 0.00 40.39 4.51
274 280 3.941483 ACTAAATTTGAGCGACTCATGGG 59.059 43.478 9.78 0.00 40.39 4.00
275 281 5.122239 TCAACTAAATTTGAGCGACTCATGG 59.878 40.000 9.78 1.65 40.39 3.66
276 282 6.169419 TCAACTAAATTTGAGCGACTCATG 57.831 37.500 9.78 4.23 40.39 3.07
277 283 6.428159 AGTTCAACTAAATTTGAGCGACTCAT 59.572 34.615 9.78 0.00 40.39 2.90
278 284 5.758296 AGTTCAACTAAATTTGAGCGACTCA 59.242 36.000 0.00 5.59 40.55 3.41
279 285 6.074005 CAGTTCAACTAAATTTGAGCGACTC 58.926 40.000 0.00 0.00 40.55 3.36
346 352 8.970293 CCACACATAAACGTCAACGAATATATA 58.030 33.333 9.88 0.00 43.02 0.86
347 353 7.493320 ACCACACATAAACGTCAACGAATATAT 59.507 33.333 9.88 0.01 43.02 0.86
348 354 6.812656 ACCACACATAAACGTCAACGAATATA 59.187 34.615 9.88 0.00 43.02 0.86
363 369 7.523293 AATGTGATTCAGAAACCACACATAA 57.477 32.000 18.51 2.70 44.44 1.90
404 417 3.305539 GCAGAGTTGGATCATTTGTGCAA 60.306 43.478 0.00 0.00 0.00 4.08
428 441 0.391228 TGCAGGAACGAACTAGTGCA 59.609 50.000 0.74 0.00 38.55 4.57
447 460 3.407424 TTAGCACAGAGTTGCAGACAT 57.593 42.857 0.00 0.00 45.62 3.06
462 479 3.197265 CACATCGGTGTCATGATTAGCA 58.803 45.455 0.00 0.00 40.24 3.49
477 494 2.679336 TCCATCTGCAATGAACACATCG 59.321 45.455 9.56 0.00 0.00 3.84
552 569 6.466308 TTGTTGTCACAGTGAGAATAATCG 57.534 37.500 15.74 0.00 32.15 3.34
633 653 6.902341 TCTGATCATAGTTTTCACTTGCAAC 58.098 36.000 0.00 0.00 34.06 4.17
746 766 0.671251 GTGGATCTAGAGCTCGTGGG 59.329 60.000 8.37 0.07 0.00 4.61
768 788 6.665474 AGACTAGTACGTGTATCAAGACAG 57.335 41.667 0.00 0.00 0.00 3.51
869 956 0.106569 TGCGGAAGGATGGCATGATT 60.107 50.000 3.81 0.00 0.00 2.57
886 973 8.061857 GCTTTGTAAAGTTTGGAATTAAGTTGC 58.938 33.333 0.00 0.00 38.28 4.17
895 982 6.362248 AGGACTAGCTTTGTAAAGTTTGGAA 58.638 36.000 0.00 0.00 38.28 3.53
901 988 8.919777 ATGTAAAAGGACTAGCTTTGTAAAGT 57.080 30.769 0.00 0.00 38.28 2.66
985 1080 5.932303 TGTCCTGCATGTAGAAGTAGAAAAC 59.068 40.000 12.93 0.00 0.00 2.43
1146 2920 5.602628 GGTCCCACTGTTCTCTCATATAAC 58.397 45.833 0.00 0.00 0.00 1.89
1194 2968 7.064847 TGGTATGTTACAACACGGTCAATATTC 59.935 37.037 0.00 0.00 42.51 1.75
1624 3398 4.657436 AACGAGGTATCTCTAGGCAAAG 57.343 45.455 0.62 0.00 37.86 2.77
1627 3401 2.100916 GCAAACGAGGTATCTCTAGGCA 59.899 50.000 0.62 0.00 37.86 4.75
1719 3496 2.241176 ACCCATTAAGCGGAATCTGGAA 59.759 45.455 0.00 0.00 0.00 3.53
1806 3583 2.286294 GTCAAGAGCATAACTGATGGCG 59.714 50.000 0.00 0.00 35.91 5.69
1903 3680 6.099125 TGGCTACTGCTATATCACTTACCAAA 59.901 38.462 0.00 0.00 39.59 3.28
1983 3765 6.014584 TGAGGCGGAGAAATTTGCTAGATATA 60.015 38.462 0.00 0.00 0.00 0.86
2088 3870 5.124617 GGCAAATTTCTCCAAGGAAGTAGAG 59.875 44.000 0.00 0.00 0.00 2.43
2092 3874 3.849527 AGGCAAATTTCTCCAAGGAAGT 58.150 40.909 8.30 0.00 0.00 3.01
2111 3893 5.635280 CAGTGACTGTGACTTACATACAAGG 59.365 44.000 4.01 0.00 38.92 3.61
2122 3904 2.111384 AGGTGAACAGTGACTGTGACT 58.889 47.619 20.19 11.81 44.62 3.41
2123 3905 2.604046 AGGTGAACAGTGACTGTGAC 57.396 50.000 20.19 17.67 44.62 3.67
2124 3906 2.905075 CAAGGTGAACAGTGACTGTGA 58.095 47.619 20.19 6.30 44.62 3.58
2125 3907 1.331756 GCAAGGTGAACAGTGACTGTG 59.668 52.381 20.19 5.87 44.62 3.66
2127 3909 1.667236 TGCAAGGTGAACAGTGACTG 58.333 50.000 11.70 11.70 37.52 3.51
2315 4126 2.879103 TGCTCTTTTGGGGGTAGAAG 57.121 50.000 0.00 0.00 0.00 2.85
2507 4321 4.080863 GCAGAGGGAACTTTCTCCTCAATA 60.081 45.833 20.01 0.00 44.43 1.90
2618 4432 8.807581 GGCAAACACAGCTAAATTTACATAATC 58.192 33.333 0.00 0.00 0.00 1.75
2853 4683 9.889128 CTGATTGTATTCCATAAACCCAATTTT 57.111 29.630 0.00 0.00 0.00 1.82
2854 4684 9.045745 ACTGATTGTATTCCATAAACCCAATTT 57.954 29.630 0.00 0.00 0.00 1.82
2857 4687 9.535170 TTAACTGATTGTATTCCATAAACCCAA 57.465 29.630 0.00 0.00 0.00 4.12
2877 4707 9.695155 TTCCCCTATTCCTTCTTATTTTAACTG 57.305 33.333 0.00 0.00 0.00 3.16
2883 4713 9.740710 CGAATATTCCCCTATTCCTTCTTATTT 57.259 33.333 9.87 0.00 35.56 1.40
2884 4714 9.112658 TCGAATATTCCCCTATTCCTTCTTATT 57.887 33.333 9.87 0.00 35.56 1.40
2885 4715 8.680820 TCGAATATTCCCCTATTCCTTCTTAT 57.319 34.615 9.87 0.00 35.56 1.73
2886 4716 8.680820 ATCGAATATTCCCCTATTCCTTCTTA 57.319 34.615 9.87 0.00 35.56 2.10
2887 4717 7.575499 ATCGAATATTCCCCTATTCCTTCTT 57.425 36.000 9.87 0.00 35.56 2.52
2889 4719 6.043411 CGATCGAATATTCCCCTATTCCTTC 58.957 44.000 10.26 0.00 35.56 3.46
2890 4720 5.484290 ACGATCGAATATTCCCCTATTCCTT 59.516 40.000 24.34 0.00 35.56 3.36
2891 4721 5.024118 ACGATCGAATATTCCCCTATTCCT 58.976 41.667 24.34 0.00 35.56 3.36
2892 4722 5.340439 ACGATCGAATATTCCCCTATTCC 57.660 43.478 24.34 0.00 35.56 3.01
2893 4723 6.310711 GTGAACGATCGAATATTCCCCTATTC 59.689 42.308 24.34 10.43 35.61 1.75
2894 4724 6.014499 AGTGAACGATCGAATATTCCCCTATT 60.014 38.462 24.34 0.00 0.00 1.73
2897 4727 3.641906 AGTGAACGATCGAATATTCCCCT 59.358 43.478 24.34 10.24 0.00 4.79
2898 4728 3.988517 GAGTGAACGATCGAATATTCCCC 59.011 47.826 24.34 8.23 0.00 4.81
2901 4731 6.583912 TTTGGAGTGAACGATCGAATATTC 57.416 37.500 24.34 15.21 0.00 1.75
2902 4732 6.978343 TTTTGGAGTGAACGATCGAATATT 57.022 33.333 24.34 5.07 0.00 1.28
2903 4733 6.816640 TCTTTTTGGAGTGAACGATCGAATAT 59.183 34.615 24.34 4.57 0.00 1.28
2905 4735 4.994852 TCTTTTTGGAGTGAACGATCGAAT 59.005 37.500 24.34 10.21 0.00 3.34
2906 4736 4.373527 TCTTTTTGGAGTGAACGATCGAA 58.626 39.130 24.34 3.78 0.00 3.71
2908 4738 3.123621 CCTCTTTTTGGAGTGAACGATCG 59.876 47.826 14.88 14.88 0.00 3.69
2911 4741 2.171870 ACCCTCTTTTTGGAGTGAACGA 59.828 45.455 0.00 0.00 0.00 3.85
2912 4742 2.548480 GACCCTCTTTTTGGAGTGAACG 59.452 50.000 0.00 0.00 0.00 3.95
2914 4744 2.783510 AGGACCCTCTTTTTGGAGTGAA 59.216 45.455 0.00 0.00 0.00 3.18
2915 4745 2.418669 AGGACCCTCTTTTTGGAGTGA 58.581 47.619 0.00 0.00 0.00 3.41
2917 4747 4.601857 TCAATAGGACCCTCTTTTTGGAGT 59.398 41.667 0.00 0.00 0.00 3.85
2919 4749 5.592587 TTCAATAGGACCCTCTTTTTGGA 57.407 39.130 0.00 0.00 0.00 3.53
2922 4752 8.547481 TTCTTTTTCAATAGGACCCTCTTTTT 57.453 30.769 0.00 0.00 0.00 1.94
2923 4753 8.547481 TTTCTTTTTCAATAGGACCCTCTTTT 57.453 30.769 0.00 0.00 0.00 2.27
2924 4754 8.727100 ATTTCTTTTTCAATAGGACCCTCTTT 57.273 30.769 0.00 0.00 0.00 2.52
2925 4755 8.727100 AATTTCTTTTTCAATAGGACCCTCTT 57.273 30.769 0.00 0.00 0.00 2.85
2926 4756 9.997172 ATAATTTCTTTTTCAATAGGACCCTCT 57.003 29.630 0.00 0.00 0.00 3.69
2928 4758 9.201989 GGATAATTTCTTTTTCAATAGGACCCT 57.798 33.333 0.00 0.00 0.00 4.34
2929 4759 8.977412 TGGATAATTTCTTTTTCAATAGGACCC 58.023 33.333 0.00 0.00 0.00 4.46
3036 5900 7.789202 TCATCTAACCCCATTGAATGAAAAA 57.211 32.000 6.76 0.00 0.00 1.94
3037 5901 7.840716 AGATCATCTAACCCCATTGAATGAAAA 59.159 33.333 6.76 0.00 30.69 2.29
3038 5902 7.286087 CAGATCATCTAACCCCATTGAATGAAA 59.714 37.037 6.76 0.00 30.69 2.69
3039 5903 6.774170 CAGATCATCTAACCCCATTGAATGAA 59.226 38.462 6.76 0.00 30.69 2.57
3040 5904 6.126390 ACAGATCATCTAACCCCATTGAATGA 60.126 38.462 6.76 0.00 31.16 2.57
3041 5905 6.066690 ACAGATCATCTAACCCCATTGAATG 58.933 40.000 0.00 0.00 0.00 2.67
3042 5906 6.271585 ACAGATCATCTAACCCCATTGAAT 57.728 37.500 0.00 0.00 0.00 2.57
3043 5907 5.715439 ACAGATCATCTAACCCCATTGAA 57.285 39.130 0.00 0.00 0.00 2.69
3044 5908 5.429762 AGAACAGATCATCTAACCCCATTGA 59.570 40.000 0.00 0.00 0.00 2.57
3045 5909 5.688807 AGAACAGATCATCTAACCCCATTG 58.311 41.667 0.00 0.00 0.00 2.82
3047 5911 5.983333 AAGAACAGATCATCTAACCCCAT 57.017 39.130 0.00 0.00 0.00 4.00
3048 5912 6.884472 TTAAGAACAGATCATCTAACCCCA 57.116 37.500 0.00 0.00 0.00 4.96
3077 5941 9.959749 GTGGAATTTGTCAATTGAGTAAAGTAA 57.040 29.630 8.80 3.12 32.35 2.24
3079 5943 8.006298 TGTGGAATTTGTCAATTGAGTAAAGT 57.994 30.769 8.80 12.34 32.35 2.66
3080 5944 8.755018 GTTGTGGAATTTGTCAATTGAGTAAAG 58.245 33.333 8.80 0.00 32.35 1.85
3082 5946 7.776107 TGTTGTGGAATTTGTCAATTGAGTAA 58.224 30.769 8.80 6.51 32.35 2.24
3083 5947 7.340122 TGTTGTGGAATTTGTCAATTGAGTA 57.660 32.000 8.80 0.00 32.35 2.59
3084 5948 6.219417 TGTTGTGGAATTTGTCAATTGAGT 57.781 33.333 8.80 0.00 32.35 3.41
3085 5949 7.536895 TTTGTTGTGGAATTTGTCAATTGAG 57.463 32.000 8.80 0.00 32.35 3.02
3087 5951 8.145316 AGATTTGTTGTGGAATTTGTCAATTG 57.855 30.769 0.00 0.00 32.35 2.32
3088 5952 8.206189 AGAGATTTGTTGTGGAATTTGTCAATT 58.794 29.630 0.00 0.00 35.12 2.32
3090 5954 7.111247 AGAGATTTGTTGTGGAATTTGTCAA 57.889 32.000 0.00 0.00 0.00 3.18
3091 5955 6.713762 AGAGATTTGTTGTGGAATTTGTCA 57.286 33.333 0.00 0.00 0.00 3.58
3092 5956 7.202526 TCAAGAGATTTGTTGTGGAATTTGTC 58.797 34.615 0.00 0.00 0.00 3.18
3093 5957 7.111247 TCAAGAGATTTGTTGTGGAATTTGT 57.889 32.000 0.00 0.00 0.00 2.83
3095 5959 8.423349 TGAATCAAGAGATTTGTTGTGGAATTT 58.577 29.630 0.00 0.00 44.30 1.82
3096 5960 7.954835 TGAATCAAGAGATTTGTTGTGGAATT 58.045 30.769 0.00 0.00 44.30 2.17
3097 5961 7.449395 TCTGAATCAAGAGATTTGTTGTGGAAT 59.551 33.333 0.00 0.00 44.30 3.01
3099 5963 6.298361 TCTGAATCAAGAGATTTGTTGTGGA 58.702 36.000 0.00 0.00 44.30 4.02
3100 5964 6.564709 TCTGAATCAAGAGATTTGTTGTGG 57.435 37.500 0.00 0.00 44.30 4.17
3103 5967 9.784680 CCTAATTCTGAATCAAGAGATTTGTTG 57.215 33.333 2.92 0.00 44.30 3.33
3104 5968 8.964772 CCCTAATTCTGAATCAAGAGATTTGTT 58.035 33.333 2.92 0.00 44.30 2.83
3105 5969 8.331740 TCCCTAATTCTGAATCAAGAGATTTGT 58.668 33.333 2.92 0.00 44.30 2.83
3106 5970 8.619546 GTCCCTAATTCTGAATCAAGAGATTTG 58.380 37.037 2.92 0.00 44.30 2.32
3108 5972 8.100135 AGTCCCTAATTCTGAATCAAGAGATT 57.900 34.615 2.92 0.00 46.85 2.40
3110 5974 6.669591 TGAGTCCCTAATTCTGAATCAAGAGA 59.330 38.462 2.92 0.00 31.04 3.10
3114 5978 6.962182 ACATGAGTCCCTAATTCTGAATCAA 58.038 36.000 0.00 0.00 36.78 2.57
3116 5980 8.370940 TGATACATGAGTCCCTAATTCTGAATC 58.629 37.037 0.00 0.00 0.00 2.52
3117 5981 8.267620 TGATACATGAGTCCCTAATTCTGAAT 57.732 34.615 0.00 0.00 0.00 2.57
3118 5982 7.675161 TGATACATGAGTCCCTAATTCTGAA 57.325 36.000 0.00 0.00 0.00 3.02
3119 5983 7.732140 AGATGATACATGAGTCCCTAATTCTGA 59.268 37.037 0.00 0.00 0.00 3.27
3121 5985 7.732140 TCAGATGATACATGAGTCCCTAATTCT 59.268 37.037 0.00 0.00 0.00 2.40
3122 5986 7.901029 TCAGATGATACATGAGTCCCTAATTC 58.099 38.462 0.00 0.00 0.00 2.17
3124 5988 7.677319 TCATCAGATGATACATGAGTCCCTAAT 59.323 37.037 9.21 0.00 33.59 1.73
3127 5991 5.400870 TCATCAGATGATACATGAGTCCCT 58.599 41.667 9.21 0.00 33.59 4.20
3128 5992 5.735285 TCATCAGATGATACATGAGTCCC 57.265 43.478 9.21 0.00 33.59 4.46
3129 5993 6.817641 GGATTCATCAGATGATACATGAGTCC 59.182 42.308 14.11 4.08 41.91 3.85
3130 5994 7.331440 GTGGATTCATCAGATGATACATGAGTC 59.669 40.741 14.11 0.00 39.39 3.36
3132 5996 7.387643 AGTGGATTCATCAGATGATACATGAG 58.612 38.462 14.11 0.00 39.39 2.90
3133 5997 7.312415 AGTGGATTCATCAGATGATACATGA 57.688 36.000 14.11 0.00 39.39 3.07
3135 5999 8.438373 AGAAAGTGGATTCATCAGATGATACAT 58.562 33.333 14.11 4.91 39.39 2.29
3136 6000 7.799081 AGAAAGTGGATTCATCAGATGATACA 58.201 34.615 14.11 10.33 39.39 2.29
3137 6001 8.674263 AAGAAAGTGGATTCATCAGATGATAC 57.326 34.615 14.11 10.58 39.39 2.24
3138 6002 9.690913 AAAAGAAAGTGGATTCATCAGATGATA 57.309 29.630 14.11 5.93 39.39 2.15
3139 6003 8.591114 AAAAGAAAGTGGATTCATCAGATGAT 57.409 30.769 14.11 4.68 39.39 2.45
3141 6005 8.733458 TGTAAAAGAAAGTGGATTCATCAGATG 58.267 33.333 3.71 3.71 0.00 2.90
3142 6006 8.734386 GTGTAAAAGAAAGTGGATTCATCAGAT 58.266 33.333 0.00 0.00 0.00 2.90
3144 6008 8.103948 AGTGTAAAAGAAAGTGGATTCATCAG 57.896 34.615 0.00 0.00 0.00 2.90
3145 6009 8.463930 AAGTGTAAAAGAAAGTGGATTCATCA 57.536 30.769 0.00 0.00 0.00 3.07
3146 6010 8.787852 AGAAGTGTAAAAGAAAGTGGATTCATC 58.212 33.333 0.00 0.00 0.00 2.92
3147 6011 8.571336 CAGAAGTGTAAAAGAAAGTGGATTCAT 58.429 33.333 0.00 0.00 0.00 2.57
3148 6012 7.556275 ACAGAAGTGTAAAAGAAAGTGGATTCA 59.444 33.333 0.00 0.00 34.05 2.57
3149 6013 7.931275 ACAGAAGTGTAAAAGAAAGTGGATTC 58.069 34.615 0.00 0.00 34.05 2.52
3150 6014 7.881775 ACAGAAGTGTAAAAGAAAGTGGATT 57.118 32.000 0.00 0.00 34.05 3.01
3153 6017 8.608844 AGATACAGAAGTGTAAAAGAAAGTGG 57.391 34.615 0.00 0.00 42.54 4.00
3245 6109 9.456147 ACACTACATATGTTGGTAAAGCATTTA 57.544 29.630 14.77 0.00 40.09 1.40
3247 6111 7.938140 ACACTACATATGTTGGTAAAGCATT 57.062 32.000 14.77 0.00 0.00 3.56
3248 6112 8.265055 ACTACACTACATATGTTGGTAAAGCAT 58.735 33.333 14.77 0.00 0.00 3.79
3249 6113 7.617225 ACTACACTACATATGTTGGTAAAGCA 58.383 34.615 14.77 0.00 0.00 3.91
3278 6142 6.498538 TGGGTGAGGATTATTGTATGGTTTT 58.501 36.000 0.00 0.00 0.00 2.43
3280 6144 5.725551 TGGGTGAGGATTATTGTATGGTT 57.274 39.130 0.00 0.00 0.00 3.67
3281 6145 5.725551 TTGGGTGAGGATTATTGTATGGT 57.274 39.130 0.00 0.00 0.00 3.55
3283 6147 5.008613 CCGTTTGGGTGAGGATTATTGTATG 59.991 44.000 0.00 0.00 0.00 2.39
3285 6149 4.519213 CCGTTTGGGTGAGGATTATTGTA 58.481 43.478 0.00 0.00 0.00 2.41
3286 6150 3.352648 CCGTTTGGGTGAGGATTATTGT 58.647 45.455 0.00 0.00 0.00 2.71
3314 6818 1.006832 AATTCGTTGAATCGCCCTCG 58.993 50.000 0.00 0.00 30.29 4.63
3319 6823 4.451557 CCGGTTATAATTCGTTGAATCGC 58.548 43.478 0.00 0.00 30.29 4.58
3320 6824 4.746115 TCCCGGTTATAATTCGTTGAATCG 59.254 41.667 0.00 0.00 30.29 3.34
3321 6825 6.425721 TGATCCCGGTTATAATTCGTTGAATC 59.574 38.462 0.00 7.38 30.29 2.52
3322 6826 6.292923 TGATCCCGGTTATAATTCGTTGAAT 58.707 36.000 0.00 0.00 33.25 2.57
3323 6827 5.672503 TGATCCCGGTTATAATTCGTTGAA 58.327 37.500 0.00 0.00 0.00 2.69
3324 6828 5.279255 TGATCCCGGTTATAATTCGTTGA 57.721 39.130 0.00 6.72 0.00 3.18
3325 6829 5.994887 TTGATCCCGGTTATAATTCGTTG 57.005 39.130 0.00 2.81 0.00 4.10
3326 6830 5.529800 CCTTTGATCCCGGTTATAATTCGTT 59.470 40.000 0.00 0.00 0.00 3.85
3327 6831 5.061179 CCTTTGATCCCGGTTATAATTCGT 58.939 41.667 0.00 0.00 0.00 3.85
3328 6832 5.302360 TCCTTTGATCCCGGTTATAATTCG 58.698 41.667 0.00 0.00 0.00 3.34
3329 6833 6.544564 TGTTCCTTTGATCCCGGTTATAATTC 59.455 38.462 0.00 0.00 0.00 2.17
3330 6834 6.428295 TGTTCCTTTGATCCCGGTTATAATT 58.572 36.000 0.00 0.00 0.00 1.40
3331 6835 6.008696 TGTTCCTTTGATCCCGGTTATAAT 57.991 37.500 0.00 0.00 0.00 1.28
3334 6838 4.310022 TTGTTCCTTTGATCCCGGTTAT 57.690 40.909 0.00 0.00 0.00 1.89
3335 6839 3.791953 TTGTTCCTTTGATCCCGGTTA 57.208 42.857 0.00 0.00 0.00 2.85
3336 6840 2.668144 TTGTTCCTTTGATCCCGGTT 57.332 45.000 0.00 0.00 0.00 4.44
3337 6841 2.668144 TTTGTTCCTTTGATCCCGGT 57.332 45.000 0.00 0.00 0.00 5.28
3338 6842 3.763897 AGAATTTGTTCCTTTGATCCCGG 59.236 43.478 0.00 0.00 0.00 5.73
3339 6843 4.458989 TCAGAATTTGTTCCTTTGATCCCG 59.541 41.667 0.00 0.00 0.00 5.14
3340 6844 5.243730 TGTCAGAATTTGTTCCTTTGATCCC 59.756 40.000 0.00 0.00 0.00 3.85
3341 6845 6.331369 TGTCAGAATTTGTTCCTTTGATCC 57.669 37.500 0.00 0.00 0.00 3.36
3343 6847 6.039270 TCGTTGTCAGAATTTGTTCCTTTGAT 59.961 34.615 0.00 0.00 0.00 2.57
3344 6848 5.355630 TCGTTGTCAGAATTTGTTCCTTTGA 59.644 36.000 0.00 0.00 0.00 2.69
3345 6849 5.577835 TCGTTGTCAGAATTTGTTCCTTTG 58.422 37.500 0.00 0.00 0.00 2.77
3347 6851 6.391227 AATCGTTGTCAGAATTTGTTCCTT 57.609 33.333 0.00 0.00 0.00 3.36
3348 6852 6.391227 AAATCGTTGTCAGAATTTGTTCCT 57.609 33.333 0.00 0.00 0.00 3.36
3349 6853 9.490663 CTATAAATCGTTGTCAGAATTTGTTCC 57.509 33.333 0.00 0.00 0.00 3.62
3357 6861 9.020813 CGAATCTTCTATAAATCGTTGTCAGAA 57.979 33.333 0.00 0.00 0.00 3.02
3360 6864 6.754675 TGCGAATCTTCTATAAATCGTTGTCA 59.245 34.615 0.00 0.00 33.18 3.58
3361 6865 7.058005 GTGCGAATCTTCTATAAATCGTTGTC 58.942 38.462 0.00 0.00 33.18 3.18
3362 6866 6.018994 GGTGCGAATCTTCTATAAATCGTTGT 60.019 38.462 0.00 0.00 33.18 3.32
3364 6868 6.046593 TGGTGCGAATCTTCTATAAATCGTT 58.953 36.000 0.00 0.00 33.18 3.85
3365 6869 5.597806 TGGTGCGAATCTTCTATAAATCGT 58.402 37.500 0.00 0.00 33.18 3.73
3366 6870 5.119279 CCTGGTGCGAATCTTCTATAAATCG 59.881 44.000 0.00 0.00 0.00 3.34
3368 6872 5.930135 ACCTGGTGCGAATCTTCTATAAAT 58.070 37.500 0.00 0.00 0.00 1.40
3369 6873 5.353394 ACCTGGTGCGAATCTTCTATAAA 57.647 39.130 0.00 0.00 0.00 1.40
3370 6874 6.266786 TCATACCTGGTGCGAATCTTCTATAA 59.733 38.462 10.23 0.00 0.00 0.98
3371 6875 5.773176 TCATACCTGGTGCGAATCTTCTATA 59.227 40.000 10.23 0.00 0.00 1.31
3372 6876 4.588951 TCATACCTGGTGCGAATCTTCTAT 59.411 41.667 10.23 0.00 0.00 1.98
3373 6877 3.958147 TCATACCTGGTGCGAATCTTCTA 59.042 43.478 10.23 0.00 0.00 2.10
3374 6878 2.766263 TCATACCTGGTGCGAATCTTCT 59.234 45.455 10.23 0.00 0.00 2.85
3375 6879 3.126831 CTCATACCTGGTGCGAATCTTC 58.873 50.000 10.23 0.00 0.00 2.87
3376 6880 2.766263 TCTCATACCTGGTGCGAATCTT 59.234 45.455 10.23 0.00 0.00 2.40
3377 6881 2.388735 TCTCATACCTGGTGCGAATCT 58.611 47.619 10.23 0.00 0.00 2.40
3378 6882 2.890808 TCTCATACCTGGTGCGAATC 57.109 50.000 10.23 0.00 0.00 2.52
3379 6883 3.134623 TGATTCTCATACCTGGTGCGAAT 59.865 43.478 10.23 11.21 0.00 3.34
3380 6884 2.499693 TGATTCTCATACCTGGTGCGAA 59.500 45.455 10.23 6.95 0.00 4.70
3381 6885 2.101415 CTGATTCTCATACCTGGTGCGA 59.899 50.000 10.23 4.72 0.00 5.10
3382 6886 2.101415 TCTGATTCTCATACCTGGTGCG 59.899 50.000 10.23 0.00 0.00 5.34
3383 6887 3.827008 TCTGATTCTCATACCTGGTGC 57.173 47.619 10.23 0.00 0.00 5.01
3385 6889 5.901853 TCTGAATCTGATTCTCATACCTGGT 59.098 40.000 25.83 4.05 39.96 4.00
3386 6890 6.416631 TCTGAATCTGATTCTCATACCTGG 57.583 41.667 25.83 0.00 39.96 4.45
3388 6892 8.766476 TCTTTTCTGAATCTGATTCTCATACCT 58.234 33.333 25.83 0.00 39.96 3.08
3389 6893 8.954950 TCTTTTCTGAATCTGATTCTCATACC 57.045 34.615 25.83 4.40 39.96 2.73
3393 6897 9.511272 TTCATTCTTTTCTGAATCTGATTCTCA 57.489 29.630 25.83 12.97 39.96 3.27
3394 6898 9.771915 GTTCATTCTTTTCTGAATCTGATTCTC 57.228 33.333 25.83 7.10 39.96 2.87
3395 6899 9.293404 TGTTCATTCTTTTCTGAATCTGATTCT 57.707 29.630 25.83 4.89 39.96 2.40
3399 6903 7.806409 TGTGTTCATTCTTTTCTGAATCTGA 57.194 32.000 0.00 0.00 34.77 3.27
3400 6904 7.916977 TGTTGTGTTCATTCTTTTCTGAATCTG 59.083 33.333 0.00 0.00 34.77 2.90
3402 6906 8.697067 CATGTTGTGTTCATTCTTTTCTGAATC 58.303 33.333 0.00 0.00 34.77 2.52
3403 6907 8.415553 TCATGTTGTGTTCATTCTTTTCTGAAT 58.584 29.630 0.00 0.00 37.16 2.57
3404 6908 7.770201 TCATGTTGTGTTCATTCTTTTCTGAA 58.230 30.769 0.00 0.00 0.00 3.02
3405 6909 7.332213 TCATGTTGTGTTCATTCTTTTCTGA 57.668 32.000 0.00 0.00 0.00 3.27
3406 6910 7.115805 CCATCATGTTGTGTTCATTCTTTTCTG 59.884 37.037 3.19 0.00 0.00 3.02
3408 6912 6.366877 CCCATCATGTTGTGTTCATTCTTTTC 59.633 38.462 3.19 0.00 0.00 2.29
3411 6915 5.078949 TCCCATCATGTTGTGTTCATTCTT 58.921 37.500 3.19 0.00 0.00 2.52
3416 6920 3.156293 CCTTCCCATCATGTTGTGTTCA 58.844 45.455 3.19 0.00 0.00 3.18
3418 6922 1.895131 GCCTTCCCATCATGTTGTGTT 59.105 47.619 3.19 0.00 0.00 3.32
3419 6923 1.203038 TGCCTTCCCATCATGTTGTGT 60.203 47.619 3.19 0.00 0.00 3.72
3423 6927 1.176527 CGTTGCCTTCCCATCATGTT 58.823 50.000 0.00 0.00 0.00 2.71
3424 6928 0.327924 TCGTTGCCTTCCCATCATGT 59.672 50.000 0.00 0.00 0.00 3.21
3427 6931 0.322456 CCTTCGTTGCCTTCCCATCA 60.322 55.000 0.00 0.00 0.00 3.07
3428 6932 1.032114 CCCTTCGTTGCCTTCCCATC 61.032 60.000 0.00 0.00 0.00 3.51
3429 6933 1.000896 CCCTTCGTTGCCTTCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
3430 6934 2.434331 CCCTTCGTTGCCTTCCCA 59.566 61.111 0.00 0.00 0.00 4.37
3431 6935 2.361230 CCCCTTCGTTGCCTTCCC 60.361 66.667 0.00 0.00 0.00 3.97
3434 6938 0.106419 TTTGACCCCTTCGTTGCCTT 60.106 50.000 0.00 0.00 0.00 4.35
3435 6939 0.112412 ATTTGACCCCTTCGTTGCCT 59.888 50.000 0.00 0.00 0.00 4.75
3436 6940 0.526211 GATTTGACCCCTTCGTTGCC 59.474 55.000 0.00 0.00 0.00 4.52
3438 6942 1.539827 GTGGATTTGACCCCTTCGTTG 59.460 52.381 0.00 0.00 0.00 4.10
3439 6943 1.144093 TGTGGATTTGACCCCTTCGTT 59.856 47.619 0.00 0.00 0.00 3.85
3440 6944 0.768622 TGTGGATTTGACCCCTTCGT 59.231 50.000 0.00 0.00 0.00 3.85
3441 6945 1.165270 GTGTGGATTTGACCCCTTCG 58.835 55.000 0.00 0.00 0.00 3.79
3442 6946 2.286365 TGTGTGGATTTGACCCCTTC 57.714 50.000 0.00 0.00 0.00 3.46
3443 6947 2.999185 ATGTGTGGATTTGACCCCTT 57.001 45.000 0.00 0.00 0.00 3.95
3444 6948 4.536765 GAATATGTGTGGATTTGACCCCT 58.463 43.478 0.00 0.00 0.00 4.79
3445 6949 3.315191 CGAATATGTGTGGATTTGACCCC 59.685 47.826 0.00 0.00 0.00 4.95
3447 6951 5.811399 TTCGAATATGTGTGGATTTGACC 57.189 39.130 0.00 0.00 0.00 4.02
3448 6952 7.015226 TCATTCGAATATGTGTGGATTTGAC 57.985 36.000 10.97 0.00 0.00 3.18
3449 6953 7.806409 ATCATTCGAATATGTGTGGATTTGA 57.194 32.000 10.97 0.86 0.00 2.69
3453 6957 9.506018 TTCATTATCATTCGAATATGTGTGGAT 57.494 29.630 10.97 9.83 0.00 3.41
3454 6958 8.900983 TTCATTATCATTCGAATATGTGTGGA 57.099 30.769 10.97 2.36 0.00 4.02
3464 6968 7.223777 TGCTGTCGTATTTCATTATCATTCGAA 59.776 33.333 0.00 0.00 0.00 3.71
3465 6969 6.699642 TGCTGTCGTATTTCATTATCATTCGA 59.300 34.615 0.00 0.00 0.00 3.71
3466 6970 6.787515 GTGCTGTCGTATTTCATTATCATTCG 59.212 38.462 0.00 0.00 0.00 3.34
3467 6971 7.072030 GGTGCTGTCGTATTTCATTATCATTC 58.928 38.462 0.00 0.00 0.00 2.67
3468 6972 6.292865 CGGTGCTGTCGTATTTCATTATCATT 60.293 38.462 0.00 0.00 0.00 2.57
3469 6973 5.177511 CGGTGCTGTCGTATTTCATTATCAT 59.822 40.000 0.00 0.00 0.00 2.45
3471 6975 4.743151 TCGGTGCTGTCGTATTTCATTATC 59.257 41.667 0.00 0.00 0.00 1.75
3474 6978 2.671396 GTCGGTGCTGTCGTATTTCATT 59.329 45.455 0.00 0.00 0.00 2.57
3475 6979 2.268298 GTCGGTGCTGTCGTATTTCAT 58.732 47.619 0.00 0.00 0.00 2.57
3477 6981 0.638746 CGTCGGTGCTGTCGTATTTC 59.361 55.000 0.00 0.00 0.00 2.17
3479 6983 0.455633 GTCGTCGGTGCTGTCGTATT 60.456 55.000 0.00 0.00 0.00 1.89
3481 6985 2.557805 GTCGTCGGTGCTGTCGTA 59.442 61.111 0.00 0.00 0.00 3.43
3482 6986 4.678269 CGTCGTCGGTGCTGTCGT 62.678 66.667 0.00 0.00 0.00 4.34
3492 6996 3.640436 TACAGTGCTCGCGTCGTCG 62.640 63.158 5.77 0.00 40.37 5.12
3493 6997 1.863880 CTACAGTGCTCGCGTCGTC 60.864 63.158 5.77 0.00 0.00 4.20
3494 6998 2.176055 CTACAGTGCTCGCGTCGT 59.824 61.111 5.77 0.00 0.00 4.34
3495 6999 2.146519 CACTACAGTGCTCGCGTCG 61.147 63.158 5.77 0.00 39.39 5.12
3496 7000 3.755404 CACTACAGTGCTCGCGTC 58.245 61.111 5.77 0.00 39.39 5.19
3505 7009 0.966920 CCCGTCTCCAACACTACAGT 59.033 55.000 0.00 0.00 0.00 3.55
3506 7010 0.246635 CCCCGTCTCCAACACTACAG 59.753 60.000 0.00 0.00 0.00 2.74
3507 7011 0.178955 TCCCCGTCTCCAACACTACA 60.179 55.000 0.00 0.00 0.00 2.74
3509 7013 1.263356 CTTCCCCGTCTCCAACACTA 58.737 55.000 0.00 0.00 0.00 2.74
3510 7014 1.481056 CCTTCCCCGTCTCCAACACT 61.481 60.000 0.00 0.00 0.00 3.55
3511 7015 1.003718 CCTTCCCCGTCTCCAACAC 60.004 63.158 0.00 0.00 0.00 3.32
3512 7016 2.221299 CCCTTCCCCGTCTCCAACA 61.221 63.158 0.00 0.00 0.00 3.33
3513 7017 2.669240 CCCTTCCCCGTCTCCAAC 59.331 66.667 0.00 0.00 0.00 3.77
3514 7018 3.327404 GCCCTTCCCCGTCTCCAA 61.327 66.667 0.00 0.00 0.00 3.53
3515 7019 4.649705 TGCCCTTCCCCGTCTCCA 62.650 66.667 0.00 0.00 0.00 3.86
3517 7021 4.452733 CGTGCCCTTCCCCGTCTC 62.453 72.222 0.00 0.00 0.00 3.36
3534 7038 4.699522 AAGAACCGGGACAGCGCC 62.700 66.667 6.32 0.00 0.00 6.53
3535 7039 3.423154 CAAGAACCGGGACAGCGC 61.423 66.667 6.32 0.00 0.00 5.92
3536 7040 3.423154 GCAAGAACCGGGACAGCG 61.423 66.667 6.32 0.00 0.00 5.18
3537 7041 3.056328 GGCAAGAACCGGGACAGC 61.056 66.667 6.32 7.65 0.00 4.40
3545 7049 2.487762 TCAATGATTCACGGCAAGAACC 59.512 45.455 0.00 0.00 0.00 3.62
3546 7050 3.426695 CCTCAATGATTCACGGCAAGAAC 60.427 47.826 0.00 0.00 0.00 3.01
3547 7051 2.749076 CCTCAATGATTCACGGCAAGAA 59.251 45.455 0.00 0.00 0.00 2.52
3548 7052 2.027285 TCCTCAATGATTCACGGCAAGA 60.027 45.455 0.00 0.00 0.00 3.02
3550 7054 2.358957 CTCCTCAATGATTCACGGCAA 58.641 47.619 0.00 0.00 0.00 4.52
3551 7055 1.407299 CCTCCTCAATGATTCACGGCA 60.407 52.381 0.00 0.00 0.00 5.69
3553 7057 2.484417 CCTCCTCCTCAATGATTCACGG 60.484 54.545 0.00 0.00 0.00 4.94
3555 7059 3.743899 GCTCCTCCTCCTCAATGATTCAC 60.744 52.174 0.00 0.00 0.00 3.18
3557 7061 2.224499 GGCTCCTCCTCCTCAATGATTC 60.224 54.545 0.00 0.00 0.00 2.52
3558 7062 1.773653 GGCTCCTCCTCCTCAATGATT 59.226 52.381 0.00 0.00 0.00 2.57
3559 7063 1.433121 GGCTCCTCCTCCTCAATGAT 58.567 55.000 0.00 0.00 0.00 2.45
3560 7064 1.045350 CGGCTCCTCCTCCTCAATGA 61.045 60.000 0.00 0.00 0.00 2.57
3561 7065 1.445095 CGGCTCCTCCTCCTCAATG 59.555 63.158 0.00 0.00 0.00 2.82
3562 7066 3.962557 CGGCTCCTCCTCCTCAAT 58.037 61.111 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.