Multiple sequence alignment - TraesCS5B01G287400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G287400 chr5B 100.000 2579 0 0 1 2579 473610399 473607821 0.000000e+00 4763.0
1 TraesCS5B01G287400 chr5B 90.527 1858 130 22 6 1818 473520208 473518352 0.000000e+00 2414.0
2 TraesCS5B01G287400 chr5B 90.854 164 14 1 2148 2310 473518471 473518308 4.320000e-53 219.0
3 TraesCS5B01G287400 chr5B 87.117 163 19 2 2419 2579 473518297 473518135 1.580000e-42 183.0
4 TraesCS5B01G287400 chr5B 91.597 119 10 0 1700 1818 473608252 473608134 5.710000e-37 165.0
5 TraesCS5B01G287400 chr5B 91.597 119 10 0 2148 2266 473608700 473608582 5.710000e-37 165.0
6 TraesCS5B01G287400 chr5B 75.706 177 36 7 2339 2509 518476565 518476740 5.910000e-12 82.4
7 TraesCS5B01G287400 chr5D 94.287 2538 109 12 76 2579 393739115 393736580 0.000000e+00 3851.0
8 TraesCS5B01G287400 chr5D 90.543 1861 130 23 3 1818 393619505 393617646 0.000000e+00 2420.0
9 TraesCS5B01G287400 chr5D 87.342 1501 186 4 74 1572 549324009 549325507 0.000000e+00 1716.0
10 TraesCS5B01G287400 chr5D 83.864 440 61 8 2148 2579 393617765 393617328 6.640000e-111 411.0
11 TraesCS5B01G287400 chr5A 93.424 1764 96 5 3 1760 663336621 663338370 0.000000e+00 2597.0
12 TraesCS5B01G287400 chr5A 92.699 1767 105 5 3 1763 495728843 495727095 0.000000e+00 2527.0
13 TraesCS5B01G287400 chr5A 92.719 1703 104 4 3 1699 495819877 495818189 0.000000e+00 2440.0
14 TraesCS5B01G287400 chr5A 89.886 1849 139 16 3 1805 495397480 495395634 0.000000e+00 2335.0
15 TraesCS5B01G287400 chr5A 94.244 886 51 0 531 1416 495587857 495586972 0.000000e+00 1354.0
16 TraesCS5B01G287400 chr5A 92.015 263 14 3 1507 1763 495586964 495586703 1.890000e-96 363.0
17 TraesCS5B01G287400 chr5A 88.506 261 17 5 3 263 495588125 495587878 1.160000e-78 303.0
18 TraesCS5B01G287400 chr5A 88.936 235 19 2 1591 1818 495585044 495584810 1.510000e-72 283.0
19 TraesCS5B01G287400 chr5A 80.921 304 48 8 2284 2579 495395423 495395122 5.550000e-57 231.0
20 TraesCS5B01G287400 chr5A 85.714 147 19 1 2148 2294 495395739 495395595 1.240000e-33 154.0
21 TraesCS5B01G287400 chr6A 83.133 166 22 6 2323 2487 176992617 176992777 2.070000e-31 147.0
22 TraesCS5B01G287400 chrUn 81.366 161 27 3 2375 2533 126687100 126686941 7.490000e-26 128.0
23 TraesCS5B01G287400 chr6B 81.935 155 23 5 1925 2077 567885705 567885856 2.690000e-25 126.0
24 TraesCS5B01G287400 chr6B 78.109 201 30 14 2339 2533 219187961 219188153 5.830000e-22 115.0
25 TraesCS5B01G287400 chr6B 78.626 131 23 5 2383 2509 591082964 591082835 5.910000e-12 82.4
26 TraesCS5B01G287400 chr2D 81.061 132 23 2 1946 2076 204340362 204340492 1.260000e-18 104.0
27 TraesCS5B01G287400 chr2D 86.154 65 8 1 1946 2009 415823157 415823221 4.600000e-08 69.4
28 TraesCS5B01G287400 chr7B 87.209 86 11 0 1952 2037 531815127 531815212 5.870000e-17 99.0
29 TraesCS5B01G287400 chr1A 83.696 92 13 2 1946 2037 572159974 572159885 4.570000e-13 86.1
30 TraesCS5B01G287400 chr3B 75.625 160 25 9 2378 2533 117724685 117724834 1.660000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G287400 chr5B 473607821 473610399 2578 True 1697.666667 4763 94.398000 1 2579 3 chr5B.!!$R2 2578
1 TraesCS5B01G287400 chr5B 473518135 473520208 2073 True 938.666667 2414 89.499333 6 2579 3 chr5B.!!$R1 2573
2 TraesCS5B01G287400 chr5D 393736580 393739115 2535 True 3851.000000 3851 94.287000 76 2579 1 chr5D.!!$R1 2503
3 TraesCS5B01G287400 chr5D 549324009 549325507 1498 False 1716.000000 1716 87.342000 74 1572 1 chr5D.!!$F1 1498
4 TraesCS5B01G287400 chr5D 393617328 393619505 2177 True 1415.500000 2420 87.203500 3 2579 2 chr5D.!!$R2 2576
5 TraesCS5B01G287400 chr5A 663336621 663338370 1749 False 2597.000000 2597 93.424000 3 1760 1 chr5A.!!$F1 1757
6 TraesCS5B01G287400 chr5A 495727095 495728843 1748 True 2527.000000 2527 92.699000 3 1763 1 chr5A.!!$R1 1760
7 TraesCS5B01G287400 chr5A 495818189 495819877 1688 True 2440.000000 2440 92.719000 3 1699 1 chr5A.!!$R2 1696
8 TraesCS5B01G287400 chr5A 495395122 495397480 2358 True 906.666667 2335 85.507000 3 2579 3 chr5A.!!$R3 2576
9 TraesCS5B01G287400 chr5A 495584810 495588125 3315 True 575.750000 1354 90.925250 3 1818 4 chr5A.!!$R4 1815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 72 0.749454 CTCACTACCCCAGCAATGGC 60.749 60.0 0.0 0.0 41.61 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 3929 0.037232 GACAGTGGGAGGAGGTTTCG 60.037 60.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.587095 ATCTCGTCGGTGAGCGAA 58.413 55.556 8.80 0.00 36.65 4.70
20 21 1.081376 CTCGTCGGTGAGCGAACTT 60.081 57.895 8.80 0.00 36.65 2.66
34 35 2.222445 GCGAACTTGCTAAAACCTTCGA 59.778 45.455 0.00 0.00 33.91 3.71
40 41 1.337447 TGCTAAAACCTTCGACCGAGG 60.337 52.381 0.00 0.00 0.00 4.63
41 42 1.337541 GCTAAAACCTTCGACCGAGGT 60.338 52.381 1.23 1.23 37.57 3.85
60 62 4.421131 AGGTGATGGATATCTCACTACCC 58.579 47.826 19.11 7.70 41.21 3.69
61 63 3.515901 GGTGATGGATATCTCACTACCCC 59.484 52.174 19.11 4.66 41.21 4.95
62 64 4.160329 GTGATGGATATCTCACTACCCCA 58.840 47.826 14.74 0.00 38.94 4.96
63 65 4.221703 GTGATGGATATCTCACTACCCCAG 59.778 50.000 14.74 0.00 38.94 4.45
64 66 2.609747 TGGATATCTCACTACCCCAGC 58.390 52.381 2.05 0.00 0.00 4.85
65 67 2.090775 TGGATATCTCACTACCCCAGCA 60.091 50.000 2.05 0.00 0.00 4.41
66 68 2.972713 GGATATCTCACTACCCCAGCAA 59.027 50.000 2.05 0.00 0.00 3.91
67 69 3.584848 GGATATCTCACTACCCCAGCAAT 59.415 47.826 2.05 0.00 0.00 3.56
68 70 4.564406 GGATATCTCACTACCCCAGCAATG 60.564 50.000 2.05 0.00 0.00 2.82
69 71 0.911769 TCTCACTACCCCAGCAATGG 59.088 55.000 0.00 0.00 0.00 3.16
70 72 0.749454 CTCACTACCCCAGCAATGGC 60.749 60.000 0.00 0.00 41.61 4.40
120 133 1.086067 CCGTCGTCTCGTACCTGCTA 61.086 60.000 0.00 0.00 0.00 3.49
131 144 1.201647 GTACCTGCTAGTGACGAAGCA 59.798 52.381 13.57 13.57 46.11 3.91
135 148 0.958822 TGCTAGTGACGAAGCACAGA 59.041 50.000 10.86 0.00 43.56 3.41
211 224 3.073599 AACCTGCACCAACTGGGCT 62.074 57.895 0.00 0.00 42.05 5.19
993 1006 1.357334 GAGCTCCGTGACGATCCTC 59.643 63.158 6.54 4.78 0.00 3.71
1063 1076 4.841617 AGGAGATCAGGGCCGCGA 62.842 66.667 8.23 0.00 0.00 5.87
1102 1124 3.321648 TGCAGCCGGATGACCTGT 61.322 61.111 26.87 0.00 0.00 4.00
1542 1564 1.371558 GACCTTCCACCGCAAGACT 59.628 57.895 0.00 0.00 43.02 3.24
1687 1756 4.077188 GTGCGCGTCTTGGACTGC 62.077 66.667 8.43 0.00 34.05 4.40
1805 3713 6.127647 TGGGACTATGATTGATTTGAAACAGC 60.128 38.462 0.00 0.00 0.00 4.40
1806 3714 6.268566 GGACTATGATTGATTTGAAACAGCC 58.731 40.000 0.00 0.00 0.00 4.85
1833 3741 7.807977 AAAAAGAATGTGACTGACTATGTGT 57.192 32.000 0.00 0.00 0.00 3.72
1834 3742 8.902540 AAAAAGAATGTGACTGACTATGTGTA 57.097 30.769 0.00 0.00 0.00 2.90
1835 3743 8.902540 AAAAGAATGTGACTGACTATGTGTAA 57.097 30.769 0.00 0.00 0.00 2.41
1836 3744 8.539770 AAAGAATGTGACTGACTATGTGTAAG 57.460 34.615 0.00 0.00 33.23 2.34
1837 3745 7.233389 AGAATGTGACTGACTATGTGTAAGT 57.767 36.000 0.00 0.00 42.95 2.24
1843 3751 6.893958 GACTGACTATGTGTAAGTCCATTG 57.106 41.667 6.84 0.00 46.73 2.82
1844 3752 6.605471 ACTGACTATGTGTAAGTCCATTGA 57.395 37.500 1.11 0.00 42.24 2.57
1845 3753 7.004555 ACTGACTATGTGTAAGTCCATTGAA 57.995 36.000 1.11 0.00 42.24 2.69
1846 3754 7.450074 ACTGACTATGTGTAAGTCCATTGAAA 58.550 34.615 1.11 0.00 42.24 2.69
1847 3755 8.103305 ACTGACTATGTGTAAGTCCATTGAAAT 58.897 33.333 1.11 0.00 42.24 2.17
1848 3756 8.492673 TGACTATGTGTAAGTCCATTGAAATC 57.507 34.615 1.11 0.00 42.24 2.17
1849 3757 7.552687 TGACTATGTGTAAGTCCATTGAAATCC 59.447 37.037 1.11 0.00 42.24 3.01
1850 3758 5.818136 ATGTGTAAGTCCATTGAAATCCG 57.182 39.130 0.00 0.00 0.00 4.18
1851 3759 4.647611 TGTGTAAGTCCATTGAAATCCGT 58.352 39.130 0.00 0.00 0.00 4.69
1852 3760 4.693566 TGTGTAAGTCCATTGAAATCCGTC 59.306 41.667 0.00 0.00 0.00 4.79
1853 3761 4.094442 GTGTAAGTCCATTGAAATCCGTCC 59.906 45.833 0.00 0.00 0.00 4.79
1854 3762 3.721087 AAGTCCATTGAAATCCGTCCT 57.279 42.857 0.00 0.00 0.00 3.85
1855 3763 3.268023 AGTCCATTGAAATCCGTCCTC 57.732 47.619 0.00 0.00 0.00 3.71
1856 3764 1.933853 GTCCATTGAAATCCGTCCTCG 59.066 52.381 0.00 0.00 0.00 4.63
1857 3765 1.828595 TCCATTGAAATCCGTCCTCGA 59.171 47.619 0.00 0.00 39.71 4.04
1858 3766 2.434336 TCCATTGAAATCCGTCCTCGAT 59.566 45.455 0.00 0.00 39.71 3.59
1859 3767 2.802816 CCATTGAAATCCGTCCTCGATC 59.197 50.000 0.00 0.00 39.71 3.69
1860 3768 3.493350 CCATTGAAATCCGTCCTCGATCT 60.493 47.826 0.00 0.00 39.71 2.75
1861 3769 3.438297 TTGAAATCCGTCCTCGATCTC 57.562 47.619 0.00 0.00 39.71 2.75
1862 3770 2.656002 TGAAATCCGTCCTCGATCTCT 58.344 47.619 0.00 0.00 39.71 3.10
1863 3771 2.359214 TGAAATCCGTCCTCGATCTCTG 59.641 50.000 0.00 0.00 39.71 3.35
1864 3772 2.350057 AATCCGTCCTCGATCTCTGA 57.650 50.000 0.00 0.00 39.71 3.27
1865 3773 2.577606 ATCCGTCCTCGATCTCTGAT 57.422 50.000 0.00 0.00 39.71 2.90
1866 3774 1.885560 TCCGTCCTCGATCTCTGATC 58.114 55.000 0.00 0.00 39.71 2.92
1867 3775 1.418264 TCCGTCCTCGATCTCTGATCT 59.582 52.381 6.09 0.00 39.71 2.75
1868 3776 2.633481 TCCGTCCTCGATCTCTGATCTA 59.367 50.000 6.09 0.00 39.71 1.98
1869 3777 3.071167 TCCGTCCTCGATCTCTGATCTAA 59.929 47.826 6.09 0.00 39.71 2.10
1870 3778 3.187637 CCGTCCTCGATCTCTGATCTAAC 59.812 52.174 6.09 0.00 39.71 2.34
1871 3779 3.120820 CGTCCTCGATCTCTGATCTAACG 60.121 52.174 6.09 6.35 39.71 3.18
1872 3780 3.187637 GTCCTCGATCTCTGATCTAACGG 59.812 52.174 6.09 2.09 0.00 4.44
1873 3781 2.095466 CCTCGATCTCTGATCTAACGGC 60.095 54.545 6.09 0.00 0.00 5.68
1874 3782 2.811431 CTCGATCTCTGATCTAACGGCT 59.189 50.000 6.09 0.00 0.00 5.52
1875 3783 2.550180 TCGATCTCTGATCTAACGGCTG 59.450 50.000 6.09 0.00 0.00 4.85
1876 3784 2.671596 GATCTCTGATCTAACGGCTGC 58.328 52.381 0.00 0.00 0.00 5.25
1877 3785 1.769026 TCTCTGATCTAACGGCTGCT 58.231 50.000 0.00 0.00 0.00 4.24
1878 3786 2.932261 TCTCTGATCTAACGGCTGCTA 58.068 47.619 0.00 0.00 0.00 3.49
1879 3787 3.288092 TCTCTGATCTAACGGCTGCTAA 58.712 45.455 0.00 0.00 0.00 3.09
1880 3788 3.316588 TCTCTGATCTAACGGCTGCTAAG 59.683 47.826 0.00 0.00 0.00 2.18
1881 3789 3.024547 TCTGATCTAACGGCTGCTAAGT 58.975 45.455 0.00 0.00 0.00 2.24
1882 3790 3.066900 TCTGATCTAACGGCTGCTAAGTC 59.933 47.826 0.00 0.00 0.00 3.01
1883 3791 2.758423 TGATCTAACGGCTGCTAAGTCA 59.242 45.455 0.00 0.00 0.00 3.41
1884 3792 3.384789 TGATCTAACGGCTGCTAAGTCAT 59.615 43.478 0.00 0.00 0.00 3.06
1885 3793 3.887621 TCTAACGGCTGCTAAGTCATT 57.112 42.857 0.00 0.00 0.00 2.57
1886 3794 4.202245 TCTAACGGCTGCTAAGTCATTT 57.798 40.909 0.00 0.00 0.00 2.32
1887 3795 4.181578 TCTAACGGCTGCTAAGTCATTTC 58.818 43.478 0.00 0.00 0.00 2.17
1888 3796 1.739067 ACGGCTGCTAAGTCATTTCC 58.261 50.000 0.00 0.00 0.00 3.13
1889 3797 1.017387 CGGCTGCTAAGTCATTTCCC 58.983 55.000 0.00 0.00 0.00 3.97
1890 3798 1.678728 CGGCTGCTAAGTCATTTCCCA 60.679 52.381 0.00 0.00 0.00 4.37
1891 3799 1.745653 GGCTGCTAAGTCATTTCCCAC 59.254 52.381 0.00 0.00 0.00 4.61
1892 3800 1.745653 GCTGCTAAGTCATTTCCCACC 59.254 52.381 0.00 0.00 0.00 4.61
1893 3801 2.619074 GCTGCTAAGTCATTTCCCACCT 60.619 50.000 0.00 0.00 0.00 4.00
1894 3802 3.274288 CTGCTAAGTCATTTCCCACCTC 58.726 50.000 0.00 0.00 0.00 3.85
1895 3803 2.026262 TGCTAAGTCATTTCCCACCTCC 60.026 50.000 0.00 0.00 0.00 4.30
1896 3804 2.684038 GCTAAGTCATTTCCCACCTCCC 60.684 54.545 0.00 0.00 0.00 4.30
1897 3805 1.455822 AAGTCATTTCCCACCTCCCA 58.544 50.000 0.00 0.00 0.00 4.37
1898 3806 1.455822 AGTCATTTCCCACCTCCCAA 58.544 50.000 0.00 0.00 0.00 4.12
1899 3807 2.003072 AGTCATTTCCCACCTCCCAAT 58.997 47.619 0.00 0.00 0.00 3.16
1900 3808 2.102578 GTCATTTCCCACCTCCCAATG 58.897 52.381 0.00 0.00 0.00 2.82
1901 3809 0.826062 CATTTCCCACCTCCCAATGC 59.174 55.000 0.00 0.00 0.00 3.56
1902 3810 0.712380 ATTTCCCACCTCCCAATGCT 59.288 50.000 0.00 0.00 0.00 3.79
1903 3811 0.486879 TTTCCCACCTCCCAATGCTT 59.513 50.000 0.00 0.00 0.00 3.91
1904 3812 0.486879 TTCCCACCTCCCAATGCTTT 59.513 50.000 0.00 0.00 0.00 3.51
1905 3813 0.039618 TCCCACCTCCCAATGCTTTC 59.960 55.000 0.00 0.00 0.00 2.62
1906 3814 0.040204 CCCACCTCCCAATGCTTTCT 59.960 55.000 0.00 0.00 0.00 2.52
1907 3815 1.550869 CCCACCTCCCAATGCTTTCTT 60.551 52.381 0.00 0.00 0.00 2.52
1908 3816 1.821136 CCACCTCCCAATGCTTTCTTC 59.179 52.381 0.00 0.00 0.00 2.87
1909 3817 1.821136 CACCTCCCAATGCTTTCTTCC 59.179 52.381 0.00 0.00 0.00 3.46
1910 3818 1.713078 ACCTCCCAATGCTTTCTTCCT 59.287 47.619 0.00 0.00 0.00 3.36
1911 3819 2.291217 ACCTCCCAATGCTTTCTTCCTC 60.291 50.000 0.00 0.00 0.00 3.71
1912 3820 2.373224 CTCCCAATGCTTTCTTCCTCC 58.627 52.381 0.00 0.00 0.00 4.30
1913 3821 1.005924 TCCCAATGCTTTCTTCCTCCC 59.994 52.381 0.00 0.00 0.00 4.30
1914 3822 1.098050 CCAATGCTTTCTTCCTCCCG 58.902 55.000 0.00 0.00 0.00 5.14
1915 3823 1.340017 CCAATGCTTTCTTCCTCCCGA 60.340 52.381 0.00 0.00 0.00 5.14
1916 3824 1.740025 CAATGCTTTCTTCCTCCCGAC 59.260 52.381 0.00 0.00 0.00 4.79
1917 3825 0.108138 ATGCTTTCTTCCTCCCGACG 60.108 55.000 0.00 0.00 0.00 5.12
1918 3826 2.101233 GCTTTCTTCCTCCCGACGC 61.101 63.158 0.00 0.00 0.00 5.19
1919 3827 1.292223 CTTTCTTCCTCCCGACGCA 59.708 57.895 0.00 0.00 0.00 5.24
1920 3828 1.005394 TTTCTTCCTCCCGACGCAC 60.005 57.895 0.00 0.00 0.00 5.34
1921 3829 1.750341 TTTCTTCCTCCCGACGCACA 61.750 55.000 0.00 0.00 0.00 4.57
1922 3830 1.541310 TTCTTCCTCCCGACGCACAT 61.541 55.000 0.00 0.00 0.00 3.21
1923 3831 1.519455 CTTCCTCCCGACGCACATC 60.519 63.158 0.00 0.00 0.00 3.06
1924 3832 1.949847 CTTCCTCCCGACGCACATCT 61.950 60.000 0.00 0.00 0.00 2.90
1925 3833 1.541310 TTCCTCCCGACGCACATCTT 61.541 55.000 0.00 0.00 0.00 2.40
1926 3834 1.519455 CCTCCCGACGCACATCTTC 60.519 63.158 0.00 0.00 0.00 2.87
1927 3835 1.513158 CTCCCGACGCACATCTTCT 59.487 57.895 0.00 0.00 0.00 2.85
1928 3836 0.108615 CTCCCGACGCACATCTTCTT 60.109 55.000 0.00 0.00 0.00 2.52
1929 3837 0.108804 TCCCGACGCACATCTTCTTC 60.109 55.000 0.00 0.00 0.00 2.87
1930 3838 1.084370 CCCGACGCACATCTTCTTCC 61.084 60.000 0.00 0.00 0.00 3.46
1931 3839 0.389817 CCGACGCACATCTTCTTCCA 60.390 55.000 0.00 0.00 0.00 3.53
1932 3840 1.428448 CGACGCACATCTTCTTCCAA 58.572 50.000 0.00 0.00 0.00 3.53
1933 3841 1.126846 CGACGCACATCTTCTTCCAAC 59.873 52.381 0.00 0.00 0.00 3.77
1934 3842 1.464997 GACGCACATCTTCTTCCAACC 59.535 52.381 0.00 0.00 0.00 3.77
1935 3843 0.443869 CGCACATCTTCTTCCAACCG 59.556 55.000 0.00 0.00 0.00 4.44
1936 3844 1.523758 GCACATCTTCTTCCAACCGT 58.476 50.000 0.00 0.00 0.00 4.83
1937 3845 1.464997 GCACATCTTCTTCCAACCGTC 59.535 52.381 0.00 0.00 0.00 4.79
1938 3846 2.076863 CACATCTTCTTCCAACCGTCC 58.923 52.381 0.00 0.00 0.00 4.79
1939 3847 1.003233 ACATCTTCTTCCAACCGTCCC 59.997 52.381 0.00 0.00 0.00 4.46
1940 3848 0.618981 ATCTTCTTCCAACCGTCCCC 59.381 55.000 0.00 0.00 0.00 4.81
1941 3849 0.765135 TCTTCTTCCAACCGTCCCCA 60.765 55.000 0.00 0.00 0.00 4.96
1942 3850 0.605589 CTTCTTCCAACCGTCCCCAC 60.606 60.000 0.00 0.00 0.00 4.61
1943 3851 2.358247 CTTCCAACCGTCCCCACG 60.358 66.667 0.00 0.00 46.29 4.94
1970 3878 4.308458 CCGAACCGTCAGCCACCA 62.308 66.667 0.00 0.00 0.00 4.17
1971 3879 3.041940 CGAACCGTCAGCCACCAC 61.042 66.667 0.00 0.00 0.00 4.16
1972 3880 2.668550 GAACCGTCAGCCACCACC 60.669 66.667 0.00 0.00 0.00 4.61
1973 3881 4.619227 AACCGTCAGCCACCACCG 62.619 66.667 0.00 0.00 0.00 4.94
2029 3937 4.468689 CGCCCTCCCCGAAACCTC 62.469 72.222 0.00 0.00 0.00 3.85
2030 3938 4.111053 GCCCTCCCCGAAACCTCC 62.111 72.222 0.00 0.00 0.00 4.30
2031 3939 2.285442 CCCTCCCCGAAACCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
2032 3940 2.368011 CCCTCCCCGAAACCTCCTC 61.368 68.421 0.00 0.00 0.00 3.71
2033 3941 2.368011 CCTCCCCGAAACCTCCTCC 61.368 68.421 0.00 0.00 0.00 4.30
2034 3942 2.285144 TCCCCGAAACCTCCTCCC 60.285 66.667 0.00 0.00 0.00 4.30
2035 3943 2.609610 CCCCGAAACCTCCTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
2036 3944 2.669240 CCCGAAACCTCCTCCCAC 59.331 66.667 0.00 0.00 0.00 4.61
2037 3945 1.918800 CCCGAAACCTCCTCCCACT 60.919 63.158 0.00 0.00 0.00 4.00
2038 3946 1.296715 CCGAAACCTCCTCCCACTG 59.703 63.158 0.00 0.00 0.00 3.66
2039 3947 1.481056 CCGAAACCTCCTCCCACTGT 61.481 60.000 0.00 0.00 0.00 3.55
2040 3948 0.037232 CGAAACCTCCTCCCACTGTC 60.037 60.000 0.00 0.00 0.00 3.51
2041 3949 0.037232 GAAACCTCCTCCCACTGTCG 60.037 60.000 0.00 0.00 0.00 4.35
2042 3950 0.763223 AAACCTCCTCCCACTGTCGT 60.763 55.000 0.00 0.00 0.00 4.34
2043 3951 1.472662 AACCTCCTCCCACTGTCGTG 61.473 60.000 0.00 0.00 40.89 4.35
2044 3952 2.262915 CTCCTCCCACTGTCGTGC 59.737 66.667 0.00 0.00 39.86 5.34
2045 3953 2.203640 TCCTCCCACTGTCGTGCT 60.204 61.111 0.00 0.00 39.86 4.40
2046 3954 0.965866 CTCCTCCCACTGTCGTGCTA 60.966 60.000 0.00 0.00 39.86 3.49
2047 3955 1.215647 CCTCCCACTGTCGTGCTAC 59.784 63.158 0.00 0.00 39.86 3.58
2048 3956 1.215647 CTCCCACTGTCGTGCTACC 59.784 63.158 0.00 0.00 39.86 3.18
2049 3957 1.532078 TCCCACTGTCGTGCTACCA 60.532 57.895 0.00 0.00 39.86 3.25
2050 3958 1.116536 TCCCACTGTCGTGCTACCAA 61.117 55.000 0.00 0.00 39.86 3.67
2051 3959 0.949105 CCCACTGTCGTGCTACCAAC 60.949 60.000 0.00 0.00 39.86 3.77
2052 3960 1.282248 CCACTGTCGTGCTACCAACG 61.282 60.000 0.00 0.00 39.86 4.10
2053 3961 1.663702 ACTGTCGTGCTACCAACGC 60.664 57.895 0.00 0.00 0.00 4.84
2054 3962 2.356553 TGTCGTGCTACCAACGCC 60.357 61.111 0.00 0.00 0.00 5.68
2055 3963 3.116531 GTCGTGCTACCAACGCCC 61.117 66.667 0.00 0.00 0.00 6.13
2056 3964 4.382320 TCGTGCTACCAACGCCCC 62.382 66.667 0.00 0.00 0.00 5.80
2060 3968 4.171103 GCTACCAACGCCCCCGAT 62.171 66.667 0.00 0.00 38.29 4.18
2061 3969 2.108362 CTACCAACGCCCCCGATC 59.892 66.667 0.00 0.00 38.29 3.69
2062 3970 2.684294 TACCAACGCCCCCGATCA 60.684 61.111 0.00 0.00 38.29 2.92
2063 3971 2.040009 CTACCAACGCCCCCGATCAT 62.040 60.000 0.00 0.00 38.29 2.45
2064 3972 2.035237 TACCAACGCCCCCGATCATC 62.035 60.000 0.00 0.00 38.29 2.92
2065 3973 2.591715 CAACGCCCCCGATCATCC 60.592 66.667 0.00 0.00 38.29 3.51
2066 3974 3.873812 AACGCCCCCGATCATCCC 61.874 66.667 0.00 0.00 38.29 3.85
2067 3975 4.880426 ACGCCCCCGATCATCCCT 62.880 66.667 0.00 0.00 38.29 4.20
2068 3976 4.008933 CGCCCCCGATCATCCCTC 62.009 72.222 0.00 0.00 36.29 4.30
2069 3977 2.527875 GCCCCCGATCATCCCTCT 60.528 66.667 0.00 0.00 0.00 3.69
2070 3978 1.229209 GCCCCCGATCATCCCTCTA 60.229 63.158 0.00 0.00 0.00 2.43
2071 3979 1.261238 GCCCCCGATCATCCCTCTAG 61.261 65.000 0.00 0.00 0.00 2.43
2072 3980 1.261238 CCCCCGATCATCCCTCTAGC 61.261 65.000 0.00 0.00 0.00 3.42
2073 3981 1.261238 CCCCGATCATCCCTCTAGCC 61.261 65.000 0.00 0.00 0.00 3.93
2074 3982 1.261238 CCCGATCATCCCTCTAGCCC 61.261 65.000 0.00 0.00 0.00 5.19
2075 3983 1.261238 CCGATCATCCCTCTAGCCCC 61.261 65.000 0.00 0.00 0.00 5.80
2076 3984 1.599606 CGATCATCCCTCTAGCCCCG 61.600 65.000 0.00 0.00 0.00 5.73
2077 3985 1.229336 ATCATCCCTCTAGCCCCGG 60.229 63.158 0.00 0.00 0.00 5.73
2078 3986 2.037304 ATCATCCCTCTAGCCCCGGT 62.037 60.000 0.00 0.00 0.00 5.28
2079 3987 2.122813 ATCCCTCTAGCCCCGGTG 60.123 66.667 0.00 0.00 0.00 4.94
2084 3992 4.853142 TCTAGCCCCGGTGCCGAT 62.853 66.667 12.71 0.00 42.83 4.18
2085 3993 4.609018 CTAGCCCCGGTGCCGATG 62.609 72.222 12.71 3.74 42.83 3.84
2089 3997 3.550431 CCCCGGTGCCGATGAGAT 61.550 66.667 12.71 0.00 42.83 2.75
2090 3998 2.505982 CCCGGTGCCGATGAGATT 59.494 61.111 12.71 0.00 42.83 2.40
2091 3999 1.153168 CCCGGTGCCGATGAGATTT 60.153 57.895 12.71 0.00 42.83 2.17
2092 4000 0.748005 CCCGGTGCCGATGAGATTTT 60.748 55.000 12.71 0.00 42.83 1.82
2093 4001 0.657840 CCGGTGCCGATGAGATTTTC 59.342 55.000 12.71 0.00 42.83 2.29
2094 4002 0.657840 CGGTGCCGATGAGATTTTCC 59.342 55.000 4.35 0.00 42.83 3.13
2095 4003 0.657840 GGTGCCGATGAGATTTTCCG 59.342 55.000 0.00 0.00 0.00 4.30
2096 4004 0.028110 GTGCCGATGAGATTTTCCGC 59.972 55.000 0.00 0.00 0.00 5.54
2097 4005 1.276844 GCCGATGAGATTTTCCGCG 59.723 57.895 0.00 0.00 0.00 6.46
2098 4006 1.934463 CCGATGAGATTTTCCGCGG 59.066 57.895 22.12 22.12 35.91 6.46
2099 4007 0.529773 CCGATGAGATTTTCCGCGGA 60.530 55.000 27.28 27.28 41.38 5.54
2100 4008 0.577269 CGATGAGATTTTCCGCGGAC 59.423 55.000 31.19 17.15 0.00 4.79
2101 4009 0.577269 GATGAGATTTTCCGCGGACG 59.423 55.000 31.19 0.00 39.67 4.79
2102 4010 0.174845 ATGAGATTTTCCGCGGACGA 59.825 50.000 31.19 20.14 43.93 4.20
2103 4011 0.038067 TGAGATTTTCCGCGGACGAA 60.038 50.000 31.19 25.26 43.93 3.85
2104 4012 0.369248 GAGATTTTCCGCGGACGAAC 59.631 55.000 31.19 19.40 43.93 3.95
2105 4013 0.037605 AGATTTTCCGCGGACGAACT 60.038 50.000 31.19 21.35 43.93 3.01
2106 4014 0.794473 GATTTTCCGCGGACGAACTT 59.206 50.000 31.19 11.68 43.93 2.66
2107 4015 0.515564 ATTTTCCGCGGACGAACTTG 59.484 50.000 31.19 0.00 43.93 3.16
2108 4016 2.108344 TTTTCCGCGGACGAACTTGC 62.108 55.000 31.19 0.00 43.93 4.01
2109 4017 3.793775 TTCCGCGGACGAACTTGCA 62.794 57.895 31.19 6.85 43.93 4.08
2110 4018 4.072088 CCGCGGACGAACTTGCAC 62.072 66.667 24.07 0.00 43.93 4.57
2111 4019 4.072088 CGCGGACGAACTTGCACC 62.072 66.667 0.00 0.00 43.93 5.01
2112 4020 4.072088 GCGGACGAACTTGCACCG 62.072 66.667 5.37 5.37 45.26 4.94
2113 4021 4.072088 CGGACGAACTTGCACCGC 62.072 66.667 0.00 0.00 37.32 5.68
2114 4022 3.723348 GGACGAACTTGCACCGCC 61.723 66.667 0.00 0.00 0.00 6.13
2115 4023 4.072088 GACGAACTTGCACCGCCG 62.072 66.667 0.00 0.00 0.00 6.46
2145 4053 4.109675 CCCCGGGCCGATTTGAGT 62.110 66.667 30.79 0.00 0.00 3.41
2146 4054 2.045340 CCCGGGCCGATTTGAGTT 60.045 61.111 30.79 0.00 0.00 3.01
2147 4055 1.222387 CCCGGGCCGATTTGAGTTA 59.778 57.895 30.79 0.00 0.00 2.24
2148 4056 0.814010 CCCGGGCCGATTTGAGTTAG 60.814 60.000 30.79 5.95 0.00 2.34
2149 4057 0.107848 CCGGGCCGATTTGAGTTAGT 60.108 55.000 30.79 0.00 0.00 2.24
2150 4058 1.287425 CGGGCCGATTTGAGTTAGTC 58.713 55.000 24.41 0.00 0.00 2.59
2151 4059 1.134788 CGGGCCGATTTGAGTTAGTCT 60.135 52.381 24.41 0.00 0.00 3.24
2152 4060 2.677037 CGGGCCGATTTGAGTTAGTCTT 60.677 50.000 24.41 0.00 0.00 3.01
2153 4061 3.344515 GGGCCGATTTGAGTTAGTCTTT 58.655 45.455 0.00 0.00 0.00 2.52
2154 4062 3.756963 GGGCCGATTTGAGTTAGTCTTTT 59.243 43.478 0.00 0.00 0.00 2.27
2155 4063 4.217767 GGGCCGATTTGAGTTAGTCTTTTT 59.782 41.667 0.00 0.00 0.00 1.94
2178 4086 9.823647 TTTTTATGTTTTGAGTTCCAGCATAAA 57.176 25.926 0.00 0.00 35.92 1.40
2179 4087 9.995003 TTTTATGTTTTGAGTTCCAGCATAAAT 57.005 25.926 0.00 0.00 36.62 1.40
2180 4088 9.995003 TTTATGTTTTGAGTTCCAGCATAAATT 57.005 25.926 0.00 0.00 34.61 1.82
2181 4089 9.995003 TTATGTTTTGAGTTCCAGCATAAATTT 57.005 25.926 0.00 0.00 30.49 1.82
2182 4090 7.712264 TGTTTTGAGTTCCAGCATAAATTTG 57.288 32.000 0.00 0.00 0.00 2.32
2183 4091 6.202570 TGTTTTGAGTTCCAGCATAAATTTGC 59.797 34.615 0.00 0.00 43.09 3.68
2210 4118 7.085052 CGACTTTATATATCGGATCCTGTGA 57.915 40.000 10.75 0.00 32.22 3.58
2211 4119 7.190191 CGACTTTATATATCGGATCCTGTGAG 58.810 42.308 10.75 0.00 32.22 3.51
2212 4120 7.148222 CGACTTTATATATCGGATCCTGTGAGT 60.148 40.741 10.75 1.57 32.22 3.41
2213 4121 9.175312 GACTTTATATATCGGATCCTGTGAGTA 57.825 37.037 10.75 0.00 0.00 2.59
2214 4122 9.529823 ACTTTATATATCGGATCCTGTGAGTAA 57.470 33.333 10.75 0.21 0.00 2.24
2217 4125 9.529823 TTATATATCGGATCCTGTGAGTAAAGT 57.470 33.333 10.75 0.00 0.00 2.66
2218 4126 6.732896 ATATCGGATCCTGTGAGTAAAGTT 57.267 37.500 10.75 0.00 0.00 2.66
2219 4127 4.188247 TCGGATCCTGTGAGTAAAGTTG 57.812 45.455 10.75 0.00 0.00 3.16
2220 4128 3.830178 TCGGATCCTGTGAGTAAAGTTGA 59.170 43.478 10.75 0.00 0.00 3.18
2221 4129 4.282449 TCGGATCCTGTGAGTAAAGTTGAA 59.718 41.667 10.75 0.00 0.00 2.69
2222 4130 4.994852 CGGATCCTGTGAGTAAAGTTGAAA 59.005 41.667 10.75 0.00 0.00 2.69
2223 4131 5.643777 CGGATCCTGTGAGTAAAGTTGAAAT 59.356 40.000 10.75 0.00 0.00 2.17
2224 4132 6.816640 CGGATCCTGTGAGTAAAGTTGAAATA 59.183 38.462 10.75 0.00 0.00 1.40
2225 4133 7.495934 CGGATCCTGTGAGTAAAGTTGAAATAT 59.504 37.037 10.75 0.00 0.00 1.28
2226 4134 9.832445 GGATCCTGTGAGTAAAGTTGAAATATA 57.168 33.333 3.84 0.00 0.00 0.86
2232 4140 9.967451 TGTGAGTAAAGTTGAAATATAATGGGA 57.033 29.630 0.00 0.00 0.00 4.37
2234 4142 9.120538 TGAGTAAAGTTGAAATATAATGGGAGC 57.879 33.333 0.00 0.00 0.00 4.70
2235 4143 9.120538 GAGTAAAGTTGAAATATAATGGGAGCA 57.879 33.333 0.00 0.00 0.00 4.26
2236 4144 9.646522 AGTAAAGTTGAAATATAATGGGAGCAT 57.353 29.630 0.00 0.00 0.00 3.79
2247 4155 9.685276 AATATAATGGGAGCATAATTGATTCGA 57.315 29.630 0.00 0.00 0.00 3.71
2248 4156 9.685276 ATATAATGGGAGCATAATTGATTCGAA 57.315 29.630 0.00 0.00 0.00 3.71
2249 4157 6.713762 AATGGGAGCATAATTGATTCGAAA 57.286 33.333 0.00 0.00 0.00 3.46
2250 4158 5.499139 TGGGAGCATAATTGATTCGAAAC 57.501 39.130 0.00 0.00 0.00 2.78
2251 4159 4.946772 TGGGAGCATAATTGATTCGAAACA 59.053 37.500 0.00 2.06 0.00 2.83
2252 4160 5.066375 TGGGAGCATAATTGATTCGAAACAG 59.934 40.000 8.19 0.00 0.00 3.16
2253 4161 5.296780 GGGAGCATAATTGATTCGAAACAGA 59.703 40.000 8.19 1.23 0.00 3.41
2254 4162 6.425504 GGAGCATAATTGATTCGAAACAGAG 58.574 40.000 8.19 0.49 0.00 3.35
2255 4163 6.369059 AGCATAATTGATTCGAAACAGAGG 57.631 37.500 8.19 2.10 0.00 3.69
2256 4164 6.115446 AGCATAATTGATTCGAAACAGAGGA 58.885 36.000 8.19 0.00 0.00 3.71
2257 4165 6.599244 AGCATAATTGATTCGAAACAGAGGAA 59.401 34.615 8.19 0.00 0.00 3.36
2258 4166 7.121168 AGCATAATTGATTCGAAACAGAGGAAA 59.879 33.333 8.19 0.00 0.00 3.13
2259 4167 7.218963 GCATAATTGATTCGAAACAGAGGAAAC 59.781 37.037 8.19 0.00 0.00 2.78
2260 4168 6.633500 AATTGATTCGAAACAGAGGAAACA 57.367 33.333 8.19 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.140717 CGGTCGAAGGTTTTAGCAAGT 58.859 47.619 0.00 0.00 0.00 3.16
20 21 1.337447 CCTCGGTCGAAGGTTTTAGCA 60.337 52.381 0.00 0.00 0.00 3.49
24 25 0.754472 TCACCTCGGTCGAAGGTTTT 59.246 50.000 4.48 0.00 32.95 2.43
31 32 2.160205 GATATCCATCACCTCGGTCGA 58.840 52.381 0.00 0.00 0.00 4.20
34 35 2.894126 GTGAGATATCCATCACCTCGGT 59.106 50.000 12.09 0.00 39.94 4.69
40 41 4.160329 TGGGGTAGTGAGATATCCATCAC 58.840 47.826 14.36 14.36 44.97 3.06
41 42 4.420206 CTGGGGTAGTGAGATATCCATCA 58.580 47.826 0.00 0.00 33.21 3.07
63 65 1.148048 GAGGAGGAGGAGCCATTGC 59.852 63.158 0.00 0.00 40.02 3.56
64 66 0.693767 AGGAGGAGGAGGAGCCATTG 60.694 60.000 0.00 0.00 40.02 2.82
65 67 0.944999 TAGGAGGAGGAGGAGCCATT 59.055 55.000 0.00 0.00 40.02 3.16
66 68 0.486879 CTAGGAGGAGGAGGAGCCAT 59.513 60.000 0.00 0.00 40.02 4.40
67 69 1.934410 CTAGGAGGAGGAGGAGCCA 59.066 63.158 0.00 0.00 40.02 4.75
68 70 1.533033 GCTAGGAGGAGGAGGAGCC 60.533 68.421 0.00 0.00 0.00 4.70
69 71 1.533033 GGCTAGGAGGAGGAGGAGC 60.533 68.421 0.00 0.00 0.00 4.70
70 72 1.228429 CGGCTAGGAGGAGGAGGAG 60.228 68.421 0.00 0.00 0.00 3.69
71 73 2.769120 CCGGCTAGGAGGAGGAGGA 61.769 68.421 0.00 0.00 45.00 3.71
120 133 1.005630 GGCTCTGTGCTTCGTCACT 60.006 57.895 1.44 0.00 42.39 3.41
131 144 3.394836 GCCCTTCCTCGGCTCTGT 61.395 66.667 0.00 0.00 43.48 3.41
211 224 1.141019 GGTTGCGATGCGGTAGAGA 59.859 57.895 0.00 0.00 0.00 3.10
915 928 1.183030 TGACGTGGTCCCTCGTGAAT 61.183 55.000 17.14 0.00 44.43 2.57
993 1006 3.842923 AGCTCCGACATCGCCCAG 61.843 66.667 0.00 0.00 38.18 4.45
1063 1076 2.478890 GCTGCTCATTGCCAGCGAT 61.479 57.895 11.56 0.00 40.01 4.58
1068 1081 4.349503 ACCCGCTGCTCATTGCCA 62.350 61.111 0.00 0.00 42.00 4.92
1095 1117 0.827925 AGGTCAGCTTCGACAGGTCA 60.828 55.000 6.54 0.00 37.66 4.02
1102 1124 1.819288 CTTCAGGTAGGTCAGCTTCGA 59.181 52.381 0.00 0.00 30.72 3.71
1575 1630 0.614294 AGAGCAGCAGAGCTTGTCAT 59.386 50.000 0.00 0.00 46.75 3.06
1671 1740 2.428960 TTAGCAGTCCAAGACGCGCA 62.429 55.000 5.73 0.00 37.96 6.09
1741 3649 9.529325 TTTACTCACAAGATCCGATGTATAAAG 57.471 33.333 0.00 0.00 0.00 1.85
1814 3722 7.513190 GACTTACACATAGTCAGTCACATTC 57.487 40.000 5.07 0.00 46.18 2.67
1820 3728 6.631016 TCAATGGACTTACACATAGTCAGTC 58.369 40.000 0.00 0.00 46.18 3.51
1821 3729 6.605471 TCAATGGACTTACACATAGTCAGT 57.395 37.500 0.00 0.00 43.00 3.41
1822 3730 7.905604 TTTCAATGGACTTACACATAGTCAG 57.094 36.000 0.00 0.00 43.00 3.51
1823 3731 7.552687 GGATTTCAATGGACTTACACATAGTCA 59.447 37.037 0.00 0.00 43.00 3.41
1824 3732 7.254455 CGGATTTCAATGGACTTACACATAGTC 60.254 40.741 0.00 0.00 41.00 2.59
1825 3733 6.538742 CGGATTTCAATGGACTTACACATAGT 59.461 38.462 0.00 0.00 0.00 2.12
1826 3734 6.538742 ACGGATTTCAATGGACTTACACATAG 59.461 38.462 0.00 0.00 0.00 2.23
1827 3735 6.411376 ACGGATTTCAATGGACTTACACATA 58.589 36.000 0.00 0.00 0.00 2.29
1828 3736 5.253330 ACGGATTTCAATGGACTTACACAT 58.747 37.500 0.00 0.00 0.00 3.21
1829 3737 4.647611 ACGGATTTCAATGGACTTACACA 58.352 39.130 0.00 0.00 0.00 3.72
1830 3738 4.094442 GGACGGATTTCAATGGACTTACAC 59.906 45.833 0.00 0.00 0.00 2.90
1831 3739 4.019681 AGGACGGATTTCAATGGACTTACA 60.020 41.667 0.00 0.00 0.00 2.41
1832 3740 4.514401 AGGACGGATTTCAATGGACTTAC 58.486 43.478 0.00 0.00 0.00 2.34
1833 3741 4.679639 CGAGGACGGATTTCAATGGACTTA 60.680 45.833 0.00 0.00 35.72 2.24
1834 3742 3.610911 GAGGACGGATTTCAATGGACTT 58.389 45.455 0.00 0.00 0.00 3.01
1835 3743 2.418746 CGAGGACGGATTTCAATGGACT 60.419 50.000 0.00 0.00 35.72 3.85
1836 3744 1.933853 CGAGGACGGATTTCAATGGAC 59.066 52.381 0.00 0.00 35.72 4.02
1837 3745 1.828595 TCGAGGACGGATTTCAATGGA 59.171 47.619 0.00 0.00 40.21 3.41
1838 3746 2.309528 TCGAGGACGGATTTCAATGG 57.690 50.000 0.00 0.00 40.21 3.16
1839 3747 3.722147 AGATCGAGGACGGATTTCAATG 58.278 45.455 0.00 0.00 40.21 2.82
1840 3748 3.639094 AGAGATCGAGGACGGATTTCAAT 59.361 43.478 0.00 0.00 40.21 2.57
1841 3749 3.024547 AGAGATCGAGGACGGATTTCAA 58.975 45.455 0.00 0.00 40.21 2.69
1842 3750 2.359214 CAGAGATCGAGGACGGATTTCA 59.641 50.000 0.00 0.00 40.21 2.69
1843 3751 2.619177 TCAGAGATCGAGGACGGATTTC 59.381 50.000 0.00 0.00 40.21 2.17
1844 3752 2.656002 TCAGAGATCGAGGACGGATTT 58.344 47.619 0.00 0.00 40.21 2.17
1845 3753 2.350057 TCAGAGATCGAGGACGGATT 57.650 50.000 0.00 0.00 40.21 3.01
1846 3754 2.039746 AGATCAGAGATCGAGGACGGAT 59.960 50.000 0.00 0.00 40.21 4.18
1847 3755 1.418264 AGATCAGAGATCGAGGACGGA 59.582 52.381 0.00 0.00 40.21 4.69
1848 3756 1.890876 AGATCAGAGATCGAGGACGG 58.109 55.000 0.00 0.00 40.21 4.79
1849 3757 3.120820 CGTTAGATCAGAGATCGAGGACG 60.121 52.174 0.00 7.06 41.26 4.79
1850 3758 3.187637 CCGTTAGATCAGAGATCGAGGAC 59.812 52.174 0.00 0.18 0.00 3.85
1851 3759 3.403968 CCGTTAGATCAGAGATCGAGGA 58.596 50.000 0.00 0.00 0.00 3.71
1852 3760 2.095466 GCCGTTAGATCAGAGATCGAGG 60.095 54.545 0.00 5.43 0.00 4.63
1853 3761 2.811431 AGCCGTTAGATCAGAGATCGAG 59.189 50.000 0.00 0.00 0.00 4.04
1854 3762 2.550180 CAGCCGTTAGATCAGAGATCGA 59.450 50.000 0.00 0.00 0.00 3.59
1855 3763 2.920227 GCAGCCGTTAGATCAGAGATCG 60.920 54.545 0.00 0.00 0.00 3.69
1856 3764 2.295909 AGCAGCCGTTAGATCAGAGATC 59.704 50.000 0.00 0.00 0.00 2.75
1857 3765 2.315176 AGCAGCCGTTAGATCAGAGAT 58.685 47.619 0.00 0.00 0.00 2.75
1858 3766 1.769026 AGCAGCCGTTAGATCAGAGA 58.231 50.000 0.00 0.00 0.00 3.10
1859 3767 3.067461 ACTTAGCAGCCGTTAGATCAGAG 59.933 47.826 0.00 0.00 0.00 3.35
1860 3768 3.024547 ACTTAGCAGCCGTTAGATCAGA 58.975 45.455 0.00 0.00 0.00 3.27
1861 3769 3.181486 TGACTTAGCAGCCGTTAGATCAG 60.181 47.826 0.00 0.00 0.00 2.90
1862 3770 2.758423 TGACTTAGCAGCCGTTAGATCA 59.242 45.455 0.00 0.00 0.00 2.92
1863 3771 3.438297 TGACTTAGCAGCCGTTAGATC 57.562 47.619 0.00 0.00 0.00 2.75
1864 3772 4.408182 AATGACTTAGCAGCCGTTAGAT 57.592 40.909 0.00 0.00 0.00 1.98
1865 3773 3.887621 AATGACTTAGCAGCCGTTAGA 57.112 42.857 0.00 0.00 0.00 2.10
1866 3774 3.309954 GGAAATGACTTAGCAGCCGTTAG 59.690 47.826 0.00 0.00 0.00 2.34
1867 3775 3.267483 GGAAATGACTTAGCAGCCGTTA 58.733 45.455 0.00 0.00 0.00 3.18
1868 3776 2.084546 GGAAATGACTTAGCAGCCGTT 58.915 47.619 0.00 0.00 0.00 4.44
1869 3777 1.679032 GGGAAATGACTTAGCAGCCGT 60.679 52.381 0.00 0.00 0.00 5.68
1870 3778 1.017387 GGGAAATGACTTAGCAGCCG 58.983 55.000 0.00 0.00 0.00 5.52
1871 3779 1.745653 GTGGGAAATGACTTAGCAGCC 59.254 52.381 0.00 0.00 0.00 4.85
1872 3780 1.745653 GGTGGGAAATGACTTAGCAGC 59.254 52.381 0.00 0.00 0.00 5.25
1873 3781 3.274288 GAGGTGGGAAATGACTTAGCAG 58.726 50.000 0.00 0.00 0.00 4.24
1874 3782 2.026262 GGAGGTGGGAAATGACTTAGCA 60.026 50.000 0.00 0.00 0.00 3.49
1875 3783 2.644676 GGAGGTGGGAAATGACTTAGC 58.355 52.381 0.00 0.00 0.00 3.09
1876 3784 2.576191 TGGGAGGTGGGAAATGACTTAG 59.424 50.000 0.00 0.00 0.00 2.18
1877 3785 2.638325 TGGGAGGTGGGAAATGACTTA 58.362 47.619 0.00 0.00 0.00 2.24
1878 3786 1.455822 TGGGAGGTGGGAAATGACTT 58.544 50.000 0.00 0.00 0.00 3.01
1879 3787 1.455822 TTGGGAGGTGGGAAATGACT 58.544 50.000 0.00 0.00 0.00 3.41
1880 3788 2.102578 CATTGGGAGGTGGGAAATGAC 58.897 52.381 0.00 0.00 31.34 3.06
1881 3789 1.619432 GCATTGGGAGGTGGGAAATGA 60.619 52.381 0.00 0.00 31.34 2.57
1882 3790 0.826062 GCATTGGGAGGTGGGAAATG 59.174 55.000 0.00 0.00 0.00 2.32
1883 3791 0.712380 AGCATTGGGAGGTGGGAAAT 59.288 50.000 0.00 0.00 0.00 2.17
1884 3792 0.486879 AAGCATTGGGAGGTGGGAAA 59.513 50.000 0.00 0.00 0.00 3.13
1885 3793 0.486879 AAAGCATTGGGAGGTGGGAA 59.513 50.000 0.00 0.00 0.00 3.97
1886 3794 0.039618 GAAAGCATTGGGAGGTGGGA 59.960 55.000 0.00 0.00 0.00 4.37
1887 3795 0.040204 AGAAAGCATTGGGAGGTGGG 59.960 55.000 0.00 0.00 0.00 4.61
1888 3796 1.821136 GAAGAAAGCATTGGGAGGTGG 59.179 52.381 0.00 0.00 0.00 4.61
1889 3797 1.821136 GGAAGAAAGCATTGGGAGGTG 59.179 52.381 0.00 0.00 0.00 4.00
1890 3798 1.713078 AGGAAGAAAGCATTGGGAGGT 59.287 47.619 0.00 0.00 0.00 3.85
1891 3799 2.373224 GAGGAAGAAAGCATTGGGAGG 58.627 52.381 0.00 0.00 0.00 4.30
1892 3800 2.373224 GGAGGAAGAAAGCATTGGGAG 58.627 52.381 0.00 0.00 0.00 4.30
1893 3801 1.005924 GGGAGGAAGAAAGCATTGGGA 59.994 52.381 0.00 0.00 0.00 4.37
1894 3802 1.478631 GGGAGGAAGAAAGCATTGGG 58.521 55.000 0.00 0.00 0.00 4.12
1895 3803 1.098050 CGGGAGGAAGAAAGCATTGG 58.902 55.000 0.00 0.00 0.00 3.16
1896 3804 1.740025 GTCGGGAGGAAGAAAGCATTG 59.260 52.381 0.00 0.00 0.00 2.82
1897 3805 1.676014 CGTCGGGAGGAAGAAAGCATT 60.676 52.381 0.00 0.00 0.00 3.56
1898 3806 0.108138 CGTCGGGAGGAAGAAAGCAT 60.108 55.000 0.00 0.00 0.00 3.79
1899 3807 1.292223 CGTCGGGAGGAAGAAAGCA 59.708 57.895 0.00 0.00 0.00 3.91
1900 3808 2.101233 GCGTCGGGAGGAAGAAAGC 61.101 63.158 0.00 0.00 0.00 3.51
1901 3809 1.014564 GTGCGTCGGGAGGAAGAAAG 61.015 60.000 0.00 0.00 0.00 2.62
1902 3810 1.005394 GTGCGTCGGGAGGAAGAAA 60.005 57.895 0.00 0.00 0.00 2.52
1903 3811 1.541310 ATGTGCGTCGGGAGGAAGAA 61.541 55.000 0.00 0.00 0.00 2.52
1904 3812 1.945354 GATGTGCGTCGGGAGGAAGA 61.945 60.000 0.00 0.00 0.00 2.87
1905 3813 1.519455 GATGTGCGTCGGGAGGAAG 60.519 63.158 0.00 0.00 0.00 3.46
1906 3814 1.541310 AAGATGTGCGTCGGGAGGAA 61.541 55.000 0.00 0.00 0.00 3.36
1907 3815 1.945354 GAAGATGTGCGTCGGGAGGA 61.945 60.000 0.00 0.00 0.00 3.71
1908 3816 1.519455 GAAGATGTGCGTCGGGAGG 60.519 63.158 0.00 0.00 0.00 4.30
1909 3817 0.108615 AAGAAGATGTGCGTCGGGAG 60.109 55.000 0.00 0.00 0.00 4.30
1910 3818 0.108804 GAAGAAGATGTGCGTCGGGA 60.109 55.000 0.00 0.00 0.00 5.14
1911 3819 1.084370 GGAAGAAGATGTGCGTCGGG 61.084 60.000 0.00 0.00 0.00 5.14
1912 3820 0.389817 TGGAAGAAGATGTGCGTCGG 60.390 55.000 0.00 0.00 0.00 4.79
1913 3821 1.126846 GTTGGAAGAAGATGTGCGTCG 59.873 52.381 0.00 0.00 0.00 5.12
1914 3822 1.464997 GGTTGGAAGAAGATGTGCGTC 59.535 52.381 0.00 0.00 0.00 5.19
1915 3823 1.523758 GGTTGGAAGAAGATGTGCGT 58.476 50.000 0.00 0.00 0.00 5.24
1916 3824 0.443869 CGGTTGGAAGAAGATGTGCG 59.556 55.000 0.00 0.00 0.00 5.34
1917 3825 1.464997 GACGGTTGGAAGAAGATGTGC 59.535 52.381 0.00 0.00 0.00 4.57
1918 3826 2.076863 GGACGGTTGGAAGAAGATGTG 58.923 52.381 0.00 0.00 0.00 3.21
1919 3827 1.003233 GGGACGGTTGGAAGAAGATGT 59.997 52.381 0.00 0.00 0.00 3.06
1920 3828 1.679032 GGGGACGGTTGGAAGAAGATG 60.679 57.143 0.00 0.00 0.00 2.90
1921 3829 0.618981 GGGGACGGTTGGAAGAAGAT 59.381 55.000 0.00 0.00 0.00 2.40
1922 3830 0.765135 TGGGGACGGTTGGAAGAAGA 60.765 55.000 0.00 0.00 0.00 2.87
1923 3831 0.605589 GTGGGGACGGTTGGAAGAAG 60.606 60.000 0.00 0.00 0.00 2.85
1924 3832 1.452801 GTGGGGACGGTTGGAAGAA 59.547 57.895 0.00 0.00 0.00 2.52
1925 3833 2.874664 CGTGGGGACGGTTGGAAGA 61.875 63.158 0.00 0.00 0.00 2.87
1926 3834 2.358247 CGTGGGGACGGTTGGAAG 60.358 66.667 0.00 0.00 0.00 3.46
1953 3861 4.308458 TGGTGGCTGACGGTTCGG 62.308 66.667 0.00 0.00 0.00 4.30
1954 3862 3.041940 GTGGTGGCTGACGGTTCG 61.042 66.667 0.00 0.00 0.00 3.95
1955 3863 2.668550 GGTGGTGGCTGACGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
1956 3864 4.619227 CGGTGGTGGCTGACGGTT 62.619 66.667 0.00 0.00 0.00 4.44
2012 3920 4.468689 GAGGTTTCGGGGAGGGCG 62.469 72.222 0.00 0.00 0.00 6.13
2013 3921 4.111053 GGAGGTTTCGGGGAGGGC 62.111 72.222 0.00 0.00 0.00 5.19
2014 3922 2.285442 AGGAGGTTTCGGGGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
2015 3923 2.368011 GGAGGAGGTTTCGGGGAGG 61.368 68.421 0.00 0.00 0.00 4.30
2016 3924 2.368011 GGGAGGAGGTTTCGGGGAG 61.368 68.421 0.00 0.00 0.00 4.30
2017 3925 2.285144 GGGAGGAGGTTTCGGGGA 60.285 66.667 0.00 0.00 0.00 4.81
2018 3926 2.609610 TGGGAGGAGGTTTCGGGG 60.610 66.667 0.00 0.00 0.00 5.73
2019 3927 1.918800 AGTGGGAGGAGGTTTCGGG 60.919 63.158 0.00 0.00 0.00 5.14
2020 3928 1.296715 CAGTGGGAGGAGGTTTCGG 59.703 63.158 0.00 0.00 0.00 4.30
2021 3929 0.037232 GACAGTGGGAGGAGGTTTCG 60.037 60.000 0.00 0.00 0.00 3.46
2022 3930 0.037232 CGACAGTGGGAGGAGGTTTC 60.037 60.000 0.00 0.00 0.00 2.78
2023 3931 0.763223 ACGACAGTGGGAGGAGGTTT 60.763 55.000 0.00 0.00 0.00 3.27
2024 3932 1.152312 ACGACAGTGGGAGGAGGTT 60.152 57.895 0.00 0.00 0.00 3.50
2025 3933 1.908793 CACGACAGTGGGAGGAGGT 60.909 63.158 0.00 0.00 44.34 3.85
2026 3934 2.973899 CACGACAGTGGGAGGAGG 59.026 66.667 0.00 0.00 44.34 4.30
2035 3943 1.663702 GCGTTGGTAGCACGACAGT 60.664 57.895 17.09 0.00 40.20 3.55
2036 3944 2.380410 GGCGTTGGTAGCACGACAG 61.380 63.158 17.09 3.68 45.56 3.51
2037 3945 2.356553 GGCGTTGGTAGCACGACA 60.357 61.111 17.09 0.00 45.56 4.35
2038 3946 3.116531 GGGCGTTGGTAGCACGAC 61.117 66.667 17.09 14.82 45.52 4.34
2039 3947 4.382320 GGGGCGTTGGTAGCACGA 62.382 66.667 17.09 0.00 40.20 4.35
2043 3951 4.171103 ATCGGGGGCGTTGGTAGC 62.171 66.667 0.00 0.00 0.00 3.58
2044 3952 2.040009 ATGATCGGGGGCGTTGGTAG 62.040 60.000 0.00 0.00 0.00 3.18
2045 3953 2.035237 GATGATCGGGGGCGTTGGTA 62.035 60.000 0.00 0.00 0.00 3.25
2046 3954 3.400599 GATGATCGGGGGCGTTGGT 62.401 63.158 0.00 0.00 0.00 3.67
2047 3955 2.591715 GATGATCGGGGGCGTTGG 60.592 66.667 0.00 0.00 0.00 3.77
2048 3956 2.591715 GGATGATCGGGGGCGTTG 60.592 66.667 0.00 0.00 0.00 4.10
2049 3957 3.873812 GGGATGATCGGGGGCGTT 61.874 66.667 0.00 0.00 0.00 4.84
2050 3958 4.880426 AGGGATGATCGGGGGCGT 62.880 66.667 0.00 0.00 0.00 5.68
2051 3959 4.008933 GAGGGATGATCGGGGGCG 62.009 72.222 0.00 0.00 0.00 6.13
2052 3960 1.229209 TAGAGGGATGATCGGGGGC 60.229 63.158 0.00 0.00 0.00 5.80
2053 3961 1.261238 GCTAGAGGGATGATCGGGGG 61.261 65.000 0.00 0.00 0.00 5.40
2054 3962 1.261238 GGCTAGAGGGATGATCGGGG 61.261 65.000 0.00 0.00 0.00 5.73
2055 3963 1.261238 GGGCTAGAGGGATGATCGGG 61.261 65.000 0.00 0.00 0.00 5.14
2056 3964 1.261238 GGGGCTAGAGGGATGATCGG 61.261 65.000 0.00 0.00 0.00 4.18
2057 3965 1.599606 CGGGGCTAGAGGGATGATCG 61.600 65.000 0.00 0.00 0.00 3.69
2058 3966 1.261238 CCGGGGCTAGAGGGATGATC 61.261 65.000 0.00 0.00 0.00 2.92
2059 3967 1.229336 CCGGGGCTAGAGGGATGAT 60.229 63.158 0.00 0.00 0.00 2.45
2060 3968 2.201490 CCGGGGCTAGAGGGATGA 59.799 66.667 0.00 0.00 0.00 2.92
2061 3969 2.122813 ACCGGGGCTAGAGGGATG 60.123 66.667 6.32 0.00 0.00 3.51
2062 3970 2.122813 CACCGGGGCTAGAGGGAT 60.123 66.667 6.32 0.00 0.00 3.85
2067 3975 4.853142 ATCGGCACCGGGGCTAGA 62.853 66.667 31.11 27.48 40.61 2.43
2068 3976 4.609018 CATCGGCACCGGGGCTAG 62.609 72.222 31.11 22.99 40.61 3.42
2072 3980 2.608970 AAATCTCATCGGCACCGGGG 62.609 60.000 6.32 0.84 40.25 5.73
2073 3981 0.748005 AAAATCTCATCGGCACCGGG 60.748 55.000 6.32 2.28 40.25 5.73
2074 3982 0.657840 GAAAATCTCATCGGCACCGG 59.342 55.000 9.58 0.00 40.25 5.28
2075 3983 0.657840 GGAAAATCTCATCGGCACCG 59.342 55.000 1.73 1.73 41.35 4.94
2076 3984 0.657840 CGGAAAATCTCATCGGCACC 59.342 55.000 0.00 0.00 0.00 5.01
2077 3985 0.028110 GCGGAAAATCTCATCGGCAC 59.972 55.000 0.00 0.00 40.42 5.01
2078 3986 1.428370 CGCGGAAAATCTCATCGGCA 61.428 55.000 0.00 0.00 40.65 5.69
2079 3987 1.276844 CGCGGAAAATCTCATCGGC 59.723 57.895 0.00 0.00 38.20 5.54
2080 3988 0.529773 TCCGCGGAAAATCTCATCGG 60.530 55.000 28.99 0.00 40.07 4.18
2081 3989 0.577269 GTCCGCGGAAAATCTCATCG 59.423 55.000 32.93 0.00 0.00 3.84
2082 3990 0.577269 CGTCCGCGGAAAATCTCATC 59.423 55.000 32.93 13.26 0.00 2.92
2083 3991 0.174845 TCGTCCGCGGAAAATCTCAT 59.825 50.000 32.93 0.00 38.89 2.90
2084 3992 0.038067 TTCGTCCGCGGAAAATCTCA 60.038 50.000 32.93 6.88 38.89 3.27
2085 3993 0.369248 GTTCGTCCGCGGAAAATCTC 59.631 55.000 32.93 15.73 38.89 2.75
2086 3994 0.037605 AGTTCGTCCGCGGAAAATCT 60.038 50.000 32.93 22.08 38.89 2.40
2087 3995 0.794473 AAGTTCGTCCGCGGAAAATC 59.206 50.000 32.93 20.17 38.89 2.17
2088 3996 0.515564 CAAGTTCGTCCGCGGAAAAT 59.484 50.000 32.93 18.65 38.89 1.82
2089 3997 1.935925 CAAGTTCGTCCGCGGAAAA 59.064 52.632 32.93 24.01 38.89 2.29
2090 3998 2.600475 GCAAGTTCGTCCGCGGAAA 61.600 57.895 32.93 19.73 38.89 3.13
2091 3999 3.039588 GCAAGTTCGTCCGCGGAA 61.040 61.111 32.93 13.60 38.89 4.30
2092 4000 4.287781 TGCAAGTTCGTCCGCGGA 62.288 61.111 27.28 27.28 38.89 5.54
2093 4001 4.072088 GTGCAAGTTCGTCCGCGG 62.072 66.667 22.12 22.12 38.89 6.46
2094 4002 4.072088 GGTGCAAGTTCGTCCGCG 62.072 66.667 0.00 0.00 39.92 6.46
2095 4003 4.072088 CGGTGCAAGTTCGTCCGC 62.072 66.667 0.00 0.00 35.01 5.54
2096 4004 4.072088 GCGGTGCAAGTTCGTCCG 62.072 66.667 5.37 5.37 43.37 4.79
2097 4005 3.723348 GGCGGTGCAAGTTCGTCC 61.723 66.667 0.00 0.00 0.00 4.79
2098 4006 4.072088 CGGCGGTGCAAGTTCGTC 62.072 66.667 0.00 0.00 0.00 4.20
2128 4036 2.260088 TAACTCAAATCGGCCCGGGG 62.260 60.000 25.28 9.31 0.00 5.73
2129 4037 0.814010 CTAACTCAAATCGGCCCGGG 60.814 60.000 19.09 19.09 0.00 5.73
2130 4038 0.107848 ACTAACTCAAATCGGCCCGG 60.108 55.000 1.90 0.00 0.00 5.73
2131 4039 1.134788 AGACTAACTCAAATCGGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
2132 4040 2.693267 AGACTAACTCAAATCGGCCC 57.307 50.000 0.00 0.00 0.00 5.80
2133 4041 5.372547 AAAAAGACTAACTCAAATCGGCC 57.627 39.130 0.00 0.00 0.00 6.13
2152 4060 9.823647 TTTATGCTGGAACTCAAAACATAAAAA 57.176 25.926 0.00 0.00 35.33 1.94
2153 4061 9.995003 ATTTATGCTGGAACTCAAAACATAAAA 57.005 25.926 8.74 0.00 38.16 1.52
2154 4062 9.995003 AATTTATGCTGGAACTCAAAACATAAA 57.005 25.926 0.00 0.00 38.54 1.40
2155 4063 9.995003 AAATTTATGCTGGAACTCAAAACATAA 57.005 25.926 0.00 0.00 30.53 1.90
2156 4064 9.421806 CAAATTTATGCTGGAACTCAAAACATA 57.578 29.630 0.00 0.00 0.00 2.29
2157 4065 7.095102 GCAAATTTATGCTGGAACTCAAAACAT 60.095 33.333 0.00 0.00 43.06 2.71
2158 4066 6.202570 GCAAATTTATGCTGGAACTCAAAACA 59.797 34.615 0.00 0.00 43.06 2.83
2159 4067 6.593072 GCAAATTTATGCTGGAACTCAAAAC 58.407 36.000 0.00 0.00 43.06 2.43
2160 4068 6.783892 GCAAATTTATGCTGGAACTCAAAA 57.216 33.333 0.00 0.00 43.06 2.44
2186 4094 7.085052 TCACAGGATCCGATATATAAAGTCG 57.915 40.000 5.98 0.00 35.29 4.18
2187 4095 8.057536 ACTCACAGGATCCGATATATAAAGTC 57.942 38.462 5.98 0.00 0.00 3.01
2188 4096 9.529823 TTACTCACAGGATCCGATATATAAAGT 57.470 33.333 5.98 4.70 0.00 2.66
2191 4099 9.529823 ACTTTACTCACAGGATCCGATATATAA 57.470 33.333 5.98 0.49 0.00 0.98
2192 4100 9.529823 AACTTTACTCACAGGATCCGATATATA 57.470 33.333 5.98 0.00 0.00 0.86
2193 4101 8.307483 CAACTTTACTCACAGGATCCGATATAT 58.693 37.037 5.98 0.00 0.00 0.86
2194 4102 7.504574 TCAACTTTACTCACAGGATCCGATATA 59.495 37.037 5.98 0.00 0.00 0.86
2195 4103 6.323996 TCAACTTTACTCACAGGATCCGATAT 59.676 38.462 5.98 0.00 0.00 1.63
2196 4104 5.655090 TCAACTTTACTCACAGGATCCGATA 59.345 40.000 5.98 0.00 0.00 2.92
2197 4105 4.466370 TCAACTTTACTCACAGGATCCGAT 59.534 41.667 5.98 0.00 0.00 4.18
2198 4106 3.830178 TCAACTTTACTCACAGGATCCGA 59.170 43.478 5.98 0.00 0.00 4.55
2199 4107 4.188247 TCAACTTTACTCACAGGATCCG 57.812 45.455 5.98 3.99 0.00 4.18
2200 4108 8.738645 ATATTTCAACTTTACTCACAGGATCC 57.261 34.615 2.48 2.48 0.00 3.36
2206 4114 9.967451 TCCCATTATATTTCAACTTTACTCACA 57.033 29.630 0.00 0.00 0.00 3.58
2208 4116 9.120538 GCTCCCATTATATTTCAACTTTACTCA 57.879 33.333 0.00 0.00 0.00 3.41
2209 4117 9.120538 TGCTCCCATTATATTTCAACTTTACTC 57.879 33.333 0.00 0.00 0.00 2.59
2210 4118 9.646522 ATGCTCCCATTATATTTCAACTTTACT 57.353 29.630 0.00 0.00 0.00 2.24
2221 4129 9.685276 TCGAATCAATTATGCTCCCATTATATT 57.315 29.630 0.00 0.00 32.85 1.28
2222 4130 9.685276 TTCGAATCAATTATGCTCCCATTATAT 57.315 29.630 0.00 0.00 32.85 0.86
2223 4131 9.513906 TTTCGAATCAATTATGCTCCCATTATA 57.486 29.630 0.00 0.00 32.85 0.98
2224 4132 8.299570 GTTTCGAATCAATTATGCTCCCATTAT 58.700 33.333 0.00 0.00 32.85 1.28
2225 4133 7.284261 TGTTTCGAATCAATTATGCTCCCATTA 59.716 33.333 6.45 0.00 32.85 1.90
2226 4134 6.096705 TGTTTCGAATCAATTATGCTCCCATT 59.903 34.615 6.45 0.00 32.85 3.16
2227 4135 5.593909 TGTTTCGAATCAATTATGCTCCCAT 59.406 36.000 6.45 0.00 35.44 4.00
2228 4136 4.946772 TGTTTCGAATCAATTATGCTCCCA 59.053 37.500 6.45 0.00 0.00 4.37
2229 4137 5.296780 TCTGTTTCGAATCAATTATGCTCCC 59.703 40.000 10.00 0.00 0.00 4.30
2230 4138 6.363577 TCTGTTTCGAATCAATTATGCTCC 57.636 37.500 10.00 0.00 0.00 4.70
2231 4139 6.258727 TCCTCTGTTTCGAATCAATTATGCTC 59.741 38.462 10.00 0.00 0.00 4.26
2232 4140 6.115446 TCCTCTGTTTCGAATCAATTATGCT 58.885 36.000 10.00 0.00 0.00 3.79
2233 4141 6.363577 TCCTCTGTTTCGAATCAATTATGC 57.636 37.500 10.00 0.00 0.00 3.14
2234 4142 8.236586 TGTTTCCTCTGTTTCGAATCAATTATG 58.763 33.333 10.00 0.00 0.00 1.90
2235 4143 8.335532 TGTTTCCTCTGTTTCGAATCAATTAT 57.664 30.769 10.00 0.00 0.00 1.28
2236 4144 7.737972 TGTTTCCTCTGTTTCGAATCAATTA 57.262 32.000 10.00 0.00 0.00 1.40
2237 4145 6.633500 TGTTTCCTCTGTTTCGAATCAATT 57.367 33.333 10.00 0.00 0.00 2.32
2238 4146 6.486657 TCTTGTTTCCTCTGTTTCGAATCAAT 59.513 34.615 10.00 0.00 29.54 2.57
2239 4147 5.820423 TCTTGTTTCCTCTGTTTCGAATCAA 59.180 36.000 10.00 1.87 0.00 2.57
2240 4148 5.364778 TCTTGTTTCCTCTGTTTCGAATCA 58.635 37.500 8.55 8.55 0.00 2.57
2241 4149 5.924475 TCTTGTTTCCTCTGTTTCGAATC 57.076 39.130 0.00 0.00 0.00 2.52
2242 4150 6.712547 AGATTCTTGTTTCCTCTGTTTCGAAT 59.287 34.615 0.00 0.00 0.00 3.34
2243 4151 6.055588 AGATTCTTGTTTCCTCTGTTTCGAA 58.944 36.000 0.00 0.00 0.00 3.71
2244 4152 5.611374 AGATTCTTGTTTCCTCTGTTTCGA 58.389 37.500 0.00 0.00 0.00 3.71
2245 4153 5.106908 GGAGATTCTTGTTTCCTCTGTTTCG 60.107 44.000 0.00 0.00 0.00 3.46
2246 4154 5.182190 GGGAGATTCTTGTTTCCTCTGTTTC 59.818 44.000 0.00 0.00 0.00 2.78
2247 4155 5.073428 GGGAGATTCTTGTTTCCTCTGTTT 58.927 41.667 0.00 0.00 0.00 2.83
2248 4156 4.507512 GGGGAGATTCTTGTTTCCTCTGTT 60.508 45.833 0.00 0.00 0.00 3.16
2249 4157 3.009584 GGGGAGATTCTTGTTTCCTCTGT 59.990 47.826 0.00 0.00 0.00 3.41
2250 4158 3.009473 TGGGGAGATTCTTGTTTCCTCTG 59.991 47.826 0.00 0.00 31.26 3.35
2251 4159 3.260205 TGGGGAGATTCTTGTTTCCTCT 58.740 45.455 0.00 0.00 31.26 3.69
2252 4160 3.721087 TGGGGAGATTCTTGTTTCCTC 57.279 47.619 0.00 0.00 0.00 3.71
2253 4161 3.399305 ACTTGGGGAGATTCTTGTTTCCT 59.601 43.478 0.00 0.00 0.00 3.36
2254 4162 3.767711 ACTTGGGGAGATTCTTGTTTCC 58.232 45.455 0.00 0.00 0.00 3.13
2255 4163 4.944317 CCTACTTGGGGAGATTCTTGTTTC 59.056 45.833 0.00 0.00 0.00 2.78
2256 4164 4.923415 CCTACTTGGGGAGATTCTTGTTT 58.077 43.478 0.00 0.00 0.00 2.83
2257 4165 4.576330 CCTACTTGGGGAGATTCTTGTT 57.424 45.455 0.00 0.00 0.00 2.83
2339 4430 7.588488 ACAAATTGTCGTAAAAATCGTTCGATT 59.412 29.630 13.56 13.56 36.52 3.34
2355 4447 2.043411 CTCCGCAAACACAAATTGTCG 58.957 47.619 0.00 0.00 37.51 4.35
2427 4519 6.533819 TTACGAACACGACAATTTTCTGAT 57.466 33.333 0.00 0.00 0.00 2.90
2428 4520 5.970140 TTACGAACACGACAATTTTCTGA 57.030 34.783 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.