Multiple sequence alignment - TraesCS5B01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G287300 chr5B 100.000 3557 0 0 1 3557 473521171 473517615 0.000000e+00 6569
1 TraesCS5B01G287300 chr5B 90.536 1902 134 22 920 2820 473610438 473608582 0.000000e+00 2473
2 TraesCS5B01G287300 chr5B 86.714 1543 185 13 1013 2545 700945311 700946843 0.000000e+00 1696
3 TraesCS5B01G287300 chr5B 86.750 1517 184 12 1031 2545 701003445 701001944 0.000000e+00 1672
4 TraesCS5B01G287300 chr5B 91.417 734 34 6 74 780 473602861 473602130 0.000000e+00 979
5 TraesCS5B01G287300 chr5B 86.735 490 56 9 2875 3359 473607981 473607496 1.450000e-148 536
6 TraesCS5B01G287300 chr5B 86.410 390 34 9 75 451 473624448 473624065 3.310000e-110 409
7 TraesCS5B01G287300 chr5B 90.854 164 14 1 2701 2864 473608252 473608090 5.980000e-53 219
8 TraesCS5B01G287300 chr5D 96.754 2249 61 5 626 2865 393619846 393617601 0.000000e+00 3738
9 TraesCS5B01G287300 chr5D 90.594 1903 125 16 918 2820 393739215 393737367 0.000000e+00 2473
10 TraesCS5B01G287300 chr5D 96.429 560 18 1 74 633 393620663 393620106 0.000000e+00 922
11 TraesCS5B01G287300 chr5D 86.290 620 72 11 2875 3486 393617494 393616880 0.000000e+00 662
12 TraesCS5B01G287300 chr5D 89.286 168 16 2 2697 2864 393737014 393736849 3.600000e-50 209
13 TraesCS5B01G287300 chr5A 95.426 2252 86 11 607 2848 495397839 495395595 0.000000e+00 3572
14 TraesCS5B01G287300 chr5A 89.394 1848 144 17 912 2759 663336572 663338367 0.000000e+00 2279
15 TraesCS5B01G287300 chr5A 88.943 1854 149 18 912 2765 495728892 495727095 0.000000e+00 2237
16 TraesCS5B01G287300 chr5A 88.262 1789 159 18 912 2700 495819926 495818189 0.000000e+00 2093
17 TraesCS5B01G287300 chr5A 92.336 535 35 4 2876 3407 495578971 495578440 0.000000e+00 756
18 TraesCS5B01G287300 chr5A 94.845 485 17 4 74 552 495398327 495397845 0.000000e+00 750
19 TraesCS5B01G287300 chr5A 91.460 363 23 6 2469 2829 495585157 495584801 3.190000e-135 492
20 TraesCS5B01G287300 chr5A 88.673 309 23 5 912 1220 495588174 495587878 2.020000e-97 366
21 TraesCS5B01G287300 chr5A 88.973 263 27 2 3226 3486 495381549 495381287 1.230000e-84 324
22 TraesCS5B01G287300 chr5A 82.642 386 42 10 81 451 495821302 495820927 5.730000e-83 318
23 TraesCS5B01G287300 chr5A 89.730 185 12 4 2581 2765 495586880 495586703 2.760000e-56 230
24 TraesCS5B01G287300 chr5A 94.309 123 5 2 3414 3535 495578403 495578282 1.690000e-43 187
25 TraesCS5B01G287300 chr5A 90.909 110 10 0 792 901 495589430 495589321 7.960000e-32 148
26 TraesCS5B01G287300 chr5A 90.000 110 11 0 792 901 495730128 495730019 3.700000e-30 143
27 TraesCS5B01G287300 chr5A 94.030 67 4 0 2824 2890 495584285 495584219 6.280000e-18 102
28 TraesCS5B01G287300 chr4A 87.112 1513 179 10 1031 2538 620950969 620952470 0.000000e+00 1700
29 TraesCS5B01G287300 chr7B 87.848 1292 151 4 1242 2531 559561840 559563127 0.000000e+00 1511
30 TraesCS5B01G287300 chr6A 88.525 61 7 0 2881 2941 176992714 176992774 1.370000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G287300 chr5B 473517615 473521171 3556 True 6569.0 6569 100.000000 1 3557 1 chr5B.!!$R1 3556
1 TraesCS5B01G287300 chr5B 700945311 700946843 1532 False 1696.0 1696 86.714000 1013 2545 1 chr5B.!!$F1 1532
2 TraesCS5B01G287300 chr5B 701001944 701003445 1501 True 1672.0 1672 86.750000 1031 2545 1 chr5B.!!$R4 1514
3 TraesCS5B01G287300 chr5B 473607496 473610438 2942 True 1076.0 2473 89.375000 920 3359 3 chr5B.!!$R5 2439
4 TraesCS5B01G287300 chr5B 473602130 473602861 731 True 979.0 979 91.417000 74 780 1 chr5B.!!$R2 706
5 TraesCS5B01G287300 chr5D 393616880 393620663 3783 True 1774.0 3738 93.157667 74 3486 3 chr5D.!!$R1 3412
6 TraesCS5B01G287300 chr5D 393736849 393739215 2366 True 1341.0 2473 89.940000 918 2864 2 chr5D.!!$R2 1946
7 TraesCS5B01G287300 chr5A 663336572 663338367 1795 False 2279.0 2279 89.394000 912 2759 1 chr5A.!!$F1 1847
8 TraesCS5B01G287300 chr5A 495395595 495398327 2732 True 2161.0 3572 95.135500 74 2848 2 chr5A.!!$R2 2774
9 TraesCS5B01G287300 chr5A 495818189 495821302 3113 True 1205.5 2093 85.452000 81 2700 2 chr5A.!!$R6 2619
10 TraesCS5B01G287300 chr5A 495727095 495730128 3033 True 1190.0 2237 89.471500 792 2765 2 chr5A.!!$R5 1973
11 TraesCS5B01G287300 chr5A 495578282 495578971 689 True 471.5 756 93.322500 2876 3535 2 chr5A.!!$R3 659
12 TraesCS5B01G287300 chr5A 495584219 495589430 5211 True 267.6 492 90.960400 792 2890 5 chr5A.!!$R4 2098
13 TraesCS5B01G287300 chr4A 620950969 620952470 1501 False 1700.0 1700 87.112000 1031 2538 1 chr4A.!!$F1 1507
14 TraesCS5B01G287300 chr7B 559561840 559563127 1287 False 1511.0 1511 87.848000 1242 2531 1 chr7B.!!$F1 1289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 975 0.326048 CTGGAGTGGATGGGGAGAGT 60.326 60.0 0.00 0.0 0.00 3.24 F
697 1009 0.615331 AATGAGTGGTGCTGGACGAT 59.385 50.0 0.00 0.0 0.00 3.73 F
789 1109 1.143813 AGGGAGTATTCAGCATGGGG 58.856 55.0 0.00 0.0 36.16 4.96 F
1997 3494 0.947244 CCGCAAGTGCTGAAGAAAGT 59.053 50.0 1.21 0.0 39.32 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 3048 1.739929 CGCCACCGTGCTAATGACA 60.740 57.895 0.00 0.00 0.0 3.58 R
1997 3494 2.068821 GCCCTGATCTCCTCCTGCA 61.069 63.158 0.00 0.00 0.0 4.41 R
2175 3693 2.125310 CCTGCCGGCACATCGTAA 60.125 61.111 29.03 0.69 0.0 3.18 R
3530 7630 0.326238 GGGAGTGGGTGGGAGTGATA 60.326 60.000 0.00 0.00 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.777297 CCTTTTGGAATTTGAGGATTCTAAAAA 57.223 29.630 16.87 12.85 46.39 1.94
46 47 4.882842 AAAAATTCCAAACAGGCCGTAT 57.117 36.364 0.00 0.00 37.29 3.06
47 48 4.882842 AAAATTCCAAACAGGCCGTATT 57.117 36.364 0.00 0.00 37.29 1.89
48 49 5.986501 AAAATTCCAAACAGGCCGTATTA 57.013 34.783 0.00 0.00 37.29 0.98
49 50 5.986501 AAATTCCAAACAGGCCGTATTAA 57.013 34.783 0.00 0.00 37.29 1.40
50 51 5.986501 AATTCCAAACAGGCCGTATTAAA 57.013 34.783 0.00 0.00 37.29 1.52
51 52 5.986501 ATTCCAAACAGGCCGTATTAAAA 57.013 34.783 0.00 0.00 37.29 1.52
52 53 5.786264 TTCCAAACAGGCCGTATTAAAAA 57.214 34.783 0.00 0.00 37.29 1.94
177 182 2.566833 TATGGCATATGTGGTGAGCC 57.433 50.000 2.32 0.00 45.41 4.70
288 293 1.537202 GAGTGCACAAGTCATTGACCC 59.463 52.381 21.04 0.00 38.83 4.46
513 535 1.737735 CGGCAAGAGTGATGCGACA 60.738 57.895 0.00 0.00 44.75 4.35
663 975 0.326048 CTGGAGTGGATGGGGAGAGT 60.326 60.000 0.00 0.00 0.00 3.24
680 992 0.687354 AGTGAGTGGACTGCGGAAAT 59.313 50.000 0.00 0.00 0.00 2.17
689 1001 1.237285 ACTGCGGAAATGAGTGGTGC 61.237 55.000 0.00 0.00 0.00 5.01
697 1009 0.615331 AATGAGTGGTGCTGGACGAT 59.385 50.000 0.00 0.00 0.00 3.73
789 1109 1.143813 AGGGAGTATTCAGCATGGGG 58.856 55.000 0.00 0.00 36.16 4.96
829 1149 9.677567 TTCATCTAGTGCAAAAACAAATTCTAC 57.322 29.630 0.00 0.00 0.00 2.59
916 2395 2.755064 TCCACCATGCCATTGCCG 60.755 61.111 0.00 0.00 36.33 5.69
933 2419 1.208776 GCCGGTCACTTTATACACCCT 59.791 52.381 1.90 0.00 0.00 4.34
962 2448 3.420606 CACGAGCAGCAGCACCTG 61.421 66.667 3.17 0.00 45.49 4.00
1997 3494 0.947244 CCGCAAGTGCTGAAGAAAGT 59.053 50.000 1.21 0.00 39.32 2.66
2190 3708 2.435234 GGTTACGATGTGCCGGCA 60.435 61.111 29.03 29.03 0.00 5.69
2688 4213 2.661866 GCGTGCGTCTTGGACTGT 60.662 61.111 0.00 0.00 36.65 3.55
2759 4284 3.135167 TCCCAAGTTTATACATCGGGTCC 59.865 47.826 0.00 0.00 33.70 4.46
2814 6252 6.748132 TGATTGATTGGAAACAGAGGAAAAC 58.252 36.000 0.00 0.00 44.54 2.43
2897 6954 7.669427 TCTCATTGTTTTGCCAGAATATTGTT 58.331 30.769 0.00 0.00 0.00 2.83
2903 6960 4.870123 TTGCCAGAATATTGTTGTGCTT 57.130 36.364 0.00 0.00 0.00 3.91
2941 6998 7.156000 TGTCATCCTCACGTCAACTAAATTTA 58.844 34.615 0.00 0.00 0.00 1.40
2977 7035 6.100404 TGGATTTGCCATGCTTAAATATCC 57.900 37.500 0.00 0.00 43.33 2.59
3087 7150 7.333528 TCTCAAAACTAGTCAAAAGTTGCAT 57.666 32.000 0.00 0.00 37.26 3.96
3225 7290 5.472137 TGTTCTGCCTGATTAGTTTAACCAC 59.528 40.000 0.00 0.00 0.00 4.16
3238 7303 4.076394 GTTTAACCACTTAGGCATCCACA 58.924 43.478 0.00 0.00 43.14 4.17
3276 7341 6.393171 GCTGCCTTTTCAAATACTCTGAAAT 58.607 36.000 0.00 0.00 41.23 2.17
3277 7342 6.309737 GCTGCCTTTTCAAATACTCTGAAATG 59.690 38.462 0.00 2.48 41.23 2.32
3359 7428 4.322349 GGATGAAGATCAGAGGGTATTCCG 60.322 50.000 0.00 0.00 41.52 4.30
3361 7430 4.286707 TGAAGATCAGAGGGTATTCCGAA 58.713 43.478 0.00 0.00 41.52 4.30
3404 7473 7.489757 TCAATTTAGTACAAAGTTTGCGCTTTT 59.510 29.630 15.59 1.30 36.64 2.27
3407 7476 4.351192 AGTACAAAGTTTGCGCTTTTGAG 58.649 39.130 23.60 7.99 36.64 3.02
3515 7615 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3516 7616 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3517 7617 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3518 7618 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3519 7619 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3520 7620 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3521 7621 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3522 7622 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3523 7623 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3524 7624 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3525 7625 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3526 7626 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3527 7627 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
3528 7628 6.065374 TCTCTCTCTCTCTCTCTCTCTCTAC 58.935 48.000 0.00 0.00 0.00 2.59
3529 7629 5.141182 TCTCTCTCTCTCTCTCTCTCTACC 58.859 50.000 0.00 0.00 0.00 3.18
3530 7630 5.103473 TCTCTCTCTCTCTCTCTCTCTACCT 60.103 48.000 0.00 0.00 0.00 3.08
3531 7631 6.102762 TCTCTCTCTCTCTCTCTCTCTACCTA 59.897 46.154 0.00 0.00 0.00 3.08
3532 7632 6.864421 TCTCTCTCTCTCTCTCTCTACCTAT 58.136 44.000 0.00 0.00 0.00 2.57
3533 7633 6.948886 TCTCTCTCTCTCTCTCTCTACCTATC 59.051 46.154 0.00 0.00 0.00 2.08
3534 7634 6.620429 TCTCTCTCTCTCTCTCTACCTATCA 58.380 44.000 0.00 0.00 0.00 2.15
3535 7635 6.493802 TCTCTCTCTCTCTCTCTACCTATCAC 59.506 46.154 0.00 0.00 0.00 3.06
3536 7636 6.382087 TCTCTCTCTCTCTCTACCTATCACT 58.618 44.000 0.00 0.00 0.00 3.41
3537 7637 6.493802 TCTCTCTCTCTCTCTACCTATCACTC 59.506 46.154 0.00 0.00 0.00 3.51
3538 7638 5.542635 TCTCTCTCTCTCTACCTATCACTCC 59.457 48.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.719645 TTAGAATCCTCAAATTCCAAAAGGAA 57.280 30.769 0.00 0.00 39.47 3.36
1 2 8.719645 TTTAGAATCCTCAAATTCCAAAAGGA 57.280 30.769 0.00 0.00 40.27 3.36
2 3 9.777297 TTTTTAGAATCCTCAAATTCCAAAAGG 57.223 29.630 0.00 0.00 37.46 3.11
25 26 4.882842 ATACGGCCTGTTTGGAATTTTT 57.117 36.364 0.00 0.00 38.35 1.94
26 27 4.882842 AATACGGCCTGTTTGGAATTTT 57.117 36.364 0.00 0.00 38.35 1.82
27 28 5.986501 TTAATACGGCCTGTTTGGAATTT 57.013 34.783 0.00 0.00 38.35 1.82
28 29 5.986501 TTTAATACGGCCTGTTTGGAATT 57.013 34.783 0.00 0.03 38.35 2.17
29 30 5.986501 TTTTAATACGGCCTGTTTGGAAT 57.013 34.783 0.00 0.00 38.35 3.01
30 31 5.786264 TTTTTAATACGGCCTGTTTGGAA 57.214 34.783 0.00 0.00 38.35 3.53
68 69 2.800250 AGCTAGTGAGGCATGCTTTTT 58.200 42.857 18.92 2.33 0.00 1.94
69 70 2.503895 AGCTAGTGAGGCATGCTTTT 57.496 45.000 18.92 3.44 0.00 2.27
70 71 2.158842 CCTAGCTAGTGAGGCATGCTTT 60.159 50.000 18.92 6.28 35.47 3.51
71 72 1.415659 CCTAGCTAGTGAGGCATGCTT 59.584 52.381 18.92 10.66 35.47 3.91
72 73 1.047002 CCTAGCTAGTGAGGCATGCT 58.953 55.000 18.92 3.20 37.72 3.79
152 157 5.392703 GCTCACCACATATGCCATATCATTG 60.393 44.000 1.58 0.00 0.00 2.82
177 182 4.036380 GGTTGGTCCTAGTGTTTTGAACTG 59.964 45.833 0.00 0.00 0.00 3.16
346 351 6.403200 GCCATCGCTCTTAATTTTAAGACACA 60.403 38.462 8.36 0.00 42.96 3.72
513 535 2.695970 CCGTCCTCTCCCTCTCCCT 61.696 68.421 0.00 0.00 0.00 4.20
663 975 0.684535 TCATTTCCGCAGTCCACTCA 59.315 50.000 0.00 0.00 0.00 3.41
680 992 1.184970 TCATCGTCCAGCACCACTCA 61.185 55.000 0.00 0.00 0.00 3.41
689 1001 4.944962 TTGCAAAACTATCATCGTCCAG 57.055 40.909 0.00 0.00 0.00 3.86
767 1087 2.173356 CCCATGCTGAATACTCCCTTCA 59.827 50.000 0.00 0.00 0.00 3.02
789 1109 9.109393 TGCACTAGATGAACAATTTCTTATACC 57.891 33.333 0.00 0.00 32.36 2.73
829 1149 5.371115 TTCTGGGCTCGAAAAATAAACAG 57.629 39.130 0.00 0.00 0.00 3.16
841 1161 6.238484 CCTGTAAGATTTTATTTCTGGGCTCG 60.238 42.308 0.00 0.00 34.07 5.03
916 2395 3.733077 CGTCGAGGGTGTATAAAGTGACC 60.733 52.174 0.00 0.00 0.00 4.02
933 2419 3.417224 CTCGTGGACGGTCGTCGA 61.417 66.667 19.24 19.24 45.41 4.20
962 2448 1.395826 ATCTAGCTGGCTCACCGACC 61.396 60.000 0.00 0.00 39.70 4.79
1003 2490 3.806949 TTGCTGGGGTAGTGAGAAATT 57.193 42.857 0.00 0.00 0.00 1.82
1364 2857 1.227263 CCGTATGGTGAGAAGGCGG 60.227 63.158 0.00 0.00 0.00 6.13
1554 3048 1.739929 CGCCACCGTGCTAATGACA 60.740 57.895 0.00 0.00 0.00 3.58
1997 3494 2.068821 GCCCTGATCTCCTCCTGCA 61.069 63.158 0.00 0.00 0.00 4.41
2175 3693 2.125310 CCTGCCGGCACATCGTAA 60.125 61.111 29.03 0.69 0.00 3.18
2270 3788 2.416432 CCGGACTCGAACCTCTCCC 61.416 68.421 0.00 0.00 39.00 4.30
2740 4265 4.570772 CACAGGACCCGATGTATAAACTTG 59.429 45.833 0.00 0.00 0.00 3.16
2741 4266 4.468510 TCACAGGACCCGATGTATAAACTT 59.531 41.667 0.00 0.00 0.00 2.66
2783 6220 7.770433 CCTCTGTTTCCAATCAATCATACTACA 59.230 37.037 0.00 0.00 0.00 2.74
2785 6222 8.089625 TCCTCTGTTTCCAATCAATCATACTA 57.910 34.615 0.00 0.00 0.00 1.82
2799 6236 5.182190 GGAGATTCTGTTTTCCTCTGTTTCC 59.818 44.000 0.00 0.00 0.00 3.13
2874 6833 7.171167 CACAACAATATTCTGGCAAAACAATGA 59.829 33.333 0.00 0.00 0.00 2.57
2879 6838 4.990426 AGCACAACAATATTCTGGCAAAAC 59.010 37.500 0.00 0.00 0.00 2.43
2897 6954 7.094805 GGATGACAAATCTAGTTTACAAGCACA 60.095 37.037 0.00 0.00 0.00 4.57
2903 6960 6.811665 CGTGAGGATGACAAATCTAGTTTACA 59.188 38.462 0.00 0.00 0.00 2.41
2955 7013 6.100404 TGGATATTTAAGCATGGCAAATCC 57.900 37.500 0.00 0.00 0.00 3.01
2977 7035 6.479990 TCGGTAATGCTAGAAATCTGACATTG 59.520 38.462 16.62 6.45 35.69 2.82
3087 7150 2.129607 GTGAAAGAAACCGTACGCTCA 58.870 47.619 10.49 0.58 0.00 4.26
3238 7303 2.629656 GCAGCCCGAGCACAACAAT 61.630 57.895 0.00 0.00 43.56 2.71
3276 7341 7.118496 TCTAAAGGGCAAAATCTGTTTTTCA 57.882 32.000 0.00 0.00 35.31 2.69
3277 7342 8.607441 AATCTAAAGGGCAAAATCTGTTTTTC 57.393 30.769 0.00 0.00 35.31 2.29
3335 7404 4.594920 GGAATACCCTCTGATCTTCATCCA 59.405 45.833 0.00 0.00 0.00 3.41
3345 7414 4.226394 TGGAATTTTCGGAATACCCTCTGA 59.774 41.667 0.00 0.00 0.00 3.27
3359 7428 2.103373 GAAGGAGGGCCTGGAATTTTC 58.897 52.381 12.95 1.61 46.28 2.29
3361 7430 1.084018 TGAAGGAGGGCCTGGAATTT 58.916 50.000 12.95 0.00 46.28 1.82
3404 7473 2.631160 TCTCGGCCTTTTGAAACTCA 57.369 45.000 0.00 0.00 0.00 3.41
3407 7476 3.762779 CATCATCTCGGCCTTTTGAAAC 58.237 45.455 0.00 0.00 0.00 2.78
3421 7520 1.609072 GCATGAGCATGTGCATCATCT 59.391 47.619 11.68 0.00 45.16 2.90
3515 7615 5.280011 GGGAGTGATAGGTAGAGAGAGAGAG 60.280 52.000 0.00 0.00 0.00 3.20
3516 7616 4.595781 GGGAGTGATAGGTAGAGAGAGAGA 59.404 50.000 0.00 0.00 0.00 3.10
3517 7617 4.349636 TGGGAGTGATAGGTAGAGAGAGAG 59.650 50.000 0.00 0.00 0.00 3.20
3518 7618 4.103469 GTGGGAGTGATAGGTAGAGAGAGA 59.897 50.000 0.00 0.00 0.00 3.10
3519 7619 4.394729 GTGGGAGTGATAGGTAGAGAGAG 58.605 52.174 0.00 0.00 0.00 3.20
3520 7620 3.138653 GGTGGGAGTGATAGGTAGAGAGA 59.861 52.174 0.00 0.00 0.00 3.10
3521 7621 3.492337 GGTGGGAGTGATAGGTAGAGAG 58.508 54.545 0.00 0.00 0.00 3.20
3522 7622 2.177233 GGGTGGGAGTGATAGGTAGAGA 59.823 54.545 0.00 0.00 0.00 3.10
3523 7623 2.091278 TGGGTGGGAGTGATAGGTAGAG 60.091 54.545 0.00 0.00 0.00 2.43
3524 7624 1.934480 TGGGTGGGAGTGATAGGTAGA 59.066 52.381 0.00 0.00 0.00 2.59
3525 7625 2.040178 GTGGGTGGGAGTGATAGGTAG 58.960 57.143 0.00 0.00 0.00 3.18
3526 7626 1.649633 AGTGGGTGGGAGTGATAGGTA 59.350 52.381 0.00 0.00 0.00 3.08
3527 7627 0.417841 AGTGGGTGGGAGTGATAGGT 59.582 55.000 0.00 0.00 0.00 3.08
3528 7628 1.123928 GAGTGGGTGGGAGTGATAGG 58.876 60.000 0.00 0.00 0.00 2.57
3529 7629 1.123928 GGAGTGGGTGGGAGTGATAG 58.876 60.000 0.00 0.00 0.00 2.08
3530 7630 0.326238 GGGAGTGGGTGGGAGTGATA 60.326 60.000 0.00 0.00 0.00 2.15
3531 7631 1.616628 GGGAGTGGGTGGGAGTGAT 60.617 63.158 0.00 0.00 0.00 3.06
3532 7632 2.203938 GGGAGTGGGTGGGAGTGA 60.204 66.667 0.00 0.00 0.00 3.41
3533 7633 0.546747 TAAGGGAGTGGGTGGGAGTG 60.547 60.000 0.00 0.00 0.00 3.51
3534 7634 0.546988 GTAAGGGAGTGGGTGGGAGT 60.547 60.000 0.00 0.00 0.00 3.85
3535 7635 1.272554 GGTAAGGGAGTGGGTGGGAG 61.273 65.000 0.00 0.00 0.00 4.30
3536 7636 1.229723 GGTAAGGGAGTGGGTGGGA 60.230 63.158 0.00 0.00 0.00 4.37
3537 7637 0.845102 AAGGTAAGGGAGTGGGTGGG 60.845 60.000 0.00 0.00 0.00 4.61
3538 7638 2.787118 AAGGTAAGGGAGTGGGTGG 58.213 57.895 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.