Multiple sequence alignment - TraesCS5B01G286400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G286400 chr5B 100.000 2474 0 0 719 3192 472274504 472276977 0.000000e+00 4569.0
1 TraesCS5B01G286400 chr5B 100.000 352 0 0 1 352 472273786 472274137 0.000000e+00 651.0
2 TraesCS5B01G286400 chr1D 95.619 1826 72 3 749 2574 75842695 75844512 0.000000e+00 2922.0
3 TraesCS5B01G286400 chr1D 93.548 310 12 8 45 348 346873401 346873094 3.750000e-124 455.0
4 TraesCS5B01G286400 chr2B 95.767 1772 67 2 812 2576 82054211 82052441 0.000000e+00 2850.0
5 TraesCS5B01G286400 chr2B 95.590 1746 73 4 832 2576 333060287 333062029 0.000000e+00 2795.0
6 TraesCS5B01G286400 chr2B 94.150 1812 78 17 765 2576 564817528 564819311 0.000000e+00 2734.0
7 TraesCS5B01G286400 chr4B 95.860 1691 68 2 860 2550 636701307 636702995 0.000000e+00 2734.0
8 TraesCS5B01G286400 chr3A 93.588 1809 110 6 746 2550 352716458 352718264 0.000000e+00 2693.0
9 TraesCS5B01G286400 chr3A 83.544 316 28 12 2826 3117 212185582 212185897 1.130000e-69 274.0
10 TraesCS5B01G286400 chr3A 90.000 150 15 0 2831 2980 212187011 212186862 9.030000e-46 195.0
11 TraesCS5B01G286400 chr5D 95.959 1658 55 3 770 2427 321716284 321717929 0.000000e+00 2680.0
12 TraesCS5B01G286400 chr5D 93.092 304 15 4 45 345 321715406 321715706 1.050000e-119 440.0
13 TraesCS5B01G286400 chr5D 91.321 265 19 1 2571 2831 391853454 391853718 3.030000e-95 359.0
14 TraesCS5B01G286400 chr5D 100.000 47 0 0 1 47 391853413 391853459 1.580000e-13 87.9
15 TraesCS5B01G286400 chr2A 95.403 1675 77 0 900 2574 737335310 737336984 0.000000e+00 2667.0
16 TraesCS5B01G286400 chr2A 91.758 364 16 8 2831 3192 122017118 122016767 7.950000e-136 494.0
17 TraesCS5B01G286400 chr3D 93.662 1783 109 4 797 2578 170560804 170559025 0.000000e+00 2663.0
18 TraesCS5B01G286400 chr7A 95.198 1666 79 1 768 2433 91412151 91410487 0.000000e+00 2632.0
19 TraesCS5B01G286400 chr7A 92.880 309 14 5 47 352 91412895 91412592 2.920000e-120 442.0
20 TraesCS5B01G286400 chr2D 94.805 308 12 3 47 352 174334048 174333743 8.010000e-131 477.0
21 TraesCS5B01G286400 chr2D 91.586 309 22 4 45 352 592381025 592381330 1.060000e-114 424.0
22 TraesCS5B01G286400 chr5A 92.581 310 18 5 44 352 69981431 69981736 1.050000e-119 440.0
23 TraesCS5B01G286400 chr5A 92.508 307 20 3 47 352 616718251 616717947 1.360000e-118 436.0
24 TraesCS5B01G286400 chr6D 91.772 316 19 5 41 352 407822928 407822616 1.760000e-117 433.0
25 TraesCS5B01G286400 chr6B 92.157 306 19 4 45 349 80378612 80378913 8.180000e-116 427.0
26 TraesCS5B01G286400 chr7B 86.859 312 35 4 2883 3190 420002262 420002571 8.480000e-91 344.0
27 TraesCS5B01G286400 chr7B 86.495 311 36 3 2883 3190 421709197 421708890 1.420000e-88 337.0
28 TraesCS5B01G286400 chr7B 86.638 232 27 2 2831 3059 421709427 421709197 1.470000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G286400 chr5B 472273786 472276977 3191 False 2610.0 4569 100.0000 1 3192 2 chr5B.!!$F1 3191
1 TraesCS5B01G286400 chr1D 75842695 75844512 1817 False 2922.0 2922 95.6190 749 2574 1 chr1D.!!$F1 1825
2 TraesCS5B01G286400 chr2B 82052441 82054211 1770 True 2850.0 2850 95.7670 812 2576 1 chr2B.!!$R1 1764
3 TraesCS5B01G286400 chr2B 333060287 333062029 1742 False 2795.0 2795 95.5900 832 2576 1 chr2B.!!$F1 1744
4 TraesCS5B01G286400 chr2B 564817528 564819311 1783 False 2734.0 2734 94.1500 765 2576 1 chr2B.!!$F2 1811
5 TraesCS5B01G286400 chr4B 636701307 636702995 1688 False 2734.0 2734 95.8600 860 2550 1 chr4B.!!$F1 1690
6 TraesCS5B01G286400 chr3A 352716458 352718264 1806 False 2693.0 2693 93.5880 746 2550 1 chr3A.!!$F2 1804
7 TraesCS5B01G286400 chr5D 321715406 321717929 2523 False 1560.0 2680 94.5255 45 2427 2 chr5D.!!$F1 2382
8 TraesCS5B01G286400 chr2A 737335310 737336984 1674 False 2667.0 2667 95.4030 900 2574 1 chr2A.!!$F1 1674
9 TraesCS5B01G286400 chr3D 170559025 170560804 1779 True 2663.0 2663 93.6620 797 2578 1 chr3D.!!$R1 1781
10 TraesCS5B01G286400 chr7A 91410487 91412895 2408 True 1537.0 2632 94.0390 47 2433 2 chr7A.!!$R1 2386
11 TraesCS5B01G286400 chr7B 421708890 421709427 537 True 295.5 337 86.5665 2831 3190 2 chr7B.!!$R1 359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.327576 AACTGGTATAGCTGGCCCCT 60.328 55.0 12.64 0.0 0.0 4.79 F
43 44 0.764752 ACTGGTATAGCTGGCCCCTC 60.765 60.0 12.64 0.0 0.0 4.30 F
1412 1965 0.605319 GCGGACATGGACCAAGTGAA 60.605 55.0 7.18 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1657 1.920325 CTTGGCCACCTCCTCCTCA 60.920 63.158 3.88 0.00 0.00 3.86 R
2036 2591 2.038820 CCTTCCACCATTGCAATTGGTT 59.961 45.455 23.38 11.31 32.95 3.67 R
2701 3263 0.030638 CCCAACACGCTTCTTTGTGG 59.969 55.000 0.00 0.00 40.39 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.732531 GGTAGTACCACCTTGATTACAAAC 57.267 41.667 14.82 0.00 38.42 2.93
26 27 6.470278 GGTAGTACCACCTTGATTACAAACT 58.530 40.000 14.82 0.00 38.42 2.66
27 28 6.370718 GGTAGTACCACCTTGATTACAAACTG 59.629 42.308 14.82 0.00 38.42 3.16
28 29 5.313712 AGTACCACCTTGATTACAAACTGG 58.686 41.667 0.00 0.00 38.03 4.00
29 30 4.178956 ACCACCTTGATTACAAACTGGT 57.821 40.909 0.00 0.00 39.25 4.00
30 31 5.313280 ACCACCTTGATTACAAACTGGTA 57.687 39.130 0.00 0.00 40.79 3.25
31 32 5.887754 ACCACCTTGATTACAAACTGGTAT 58.112 37.500 0.00 0.00 40.79 2.73
32 33 7.023171 ACCACCTTGATTACAAACTGGTATA 57.977 36.000 0.00 0.00 40.79 1.47
33 34 7.110155 ACCACCTTGATTACAAACTGGTATAG 58.890 38.462 0.00 0.00 40.79 1.31
34 35 6.038271 CCACCTTGATTACAAACTGGTATAGC 59.962 42.308 0.00 0.00 32.71 2.97
35 36 6.823689 CACCTTGATTACAAACTGGTATAGCT 59.176 38.462 3.20 0.00 32.71 3.32
36 37 6.823689 ACCTTGATTACAAACTGGTATAGCTG 59.176 38.462 0.00 7.21 32.71 4.24
37 38 6.260936 CCTTGATTACAAACTGGTATAGCTGG 59.739 42.308 12.64 4.32 35.49 4.85
38 39 5.123227 TGATTACAAACTGGTATAGCTGGC 58.877 41.667 12.64 0.00 0.00 4.85
39 40 2.420058 ACAAACTGGTATAGCTGGCC 57.580 50.000 12.64 0.00 0.00 5.36
40 41 1.064685 ACAAACTGGTATAGCTGGCCC 60.065 52.381 12.64 0.00 0.00 5.80
41 42 0.551396 AAACTGGTATAGCTGGCCCC 59.449 55.000 12.64 0.00 0.00 5.80
42 43 0.327576 AACTGGTATAGCTGGCCCCT 60.328 55.000 12.64 0.00 0.00 4.79
43 44 0.764752 ACTGGTATAGCTGGCCCCTC 60.765 60.000 12.64 0.00 0.00 4.30
71 72 3.181480 GCAAGTCTAGTAGAGCCCTCAAG 60.181 52.174 0.00 0.00 0.00 3.02
115 119 6.303021 ACTATTTTTAACAGTTTTCGCCGA 57.697 33.333 0.00 0.00 0.00 5.54
155 159 3.981375 AGAACCTCTAAACCCTCAAACCT 59.019 43.478 0.00 0.00 0.00 3.50
157 161 3.053826 ACCTCTAAACCCTCAAACCTGT 58.946 45.455 0.00 0.00 0.00 4.00
213 217 1.978580 CCCAACCTGTAGAAGTGAGGT 59.021 52.381 0.00 0.00 42.14 3.85
229 233 3.318275 GTGAGGTTTGGGAGGAAAAACTC 59.682 47.826 6.94 6.94 46.84 3.01
259 263 0.892063 GCACTCCTCTTTCCTCTCGT 59.108 55.000 0.00 0.00 0.00 4.18
289 293 1.289244 AATTTCATCCCCGCCTCCCT 61.289 55.000 0.00 0.00 0.00 4.20
830 1383 4.033776 CGCCCCCAAGAAGAGCCA 62.034 66.667 0.00 0.00 0.00 4.75
877 1430 2.231380 GGGGCTTCCTCCAAGGTCA 61.231 63.158 0.00 0.00 36.53 4.02
888 1441 1.215382 CAAGGTCATCGGCTCGTCA 59.785 57.895 0.00 0.00 0.00 4.35
903 1456 0.953471 CGTCACCGGCCATGAAGAAA 60.953 55.000 12.83 0.00 0.00 2.52
912 1465 1.094785 CCATGAAGAAACCGCGGAAT 58.905 50.000 35.90 20.47 0.00 3.01
959 1512 3.470888 CGAACCTCCTCCCGCCAT 61.471 66.667 0.00 0.00 0.00 4.40
973 1526 1.965930 GCCATGCACGAGGTGTTCA 60.966 57.895 0.00 0.00 35.75 3.18
1021 1574 3.991536 GACCTCCTCCAAGACGCGC 62.992 68.421 5.73 0.00 0.00 6.86
1098 1651 3.051496 AGGAAGATGAGGAGGATGAAGGA 60.051 47.826 0.00 0.00 0.00 3.36
1104 1657 4.210611 TGAGGAGGATGAAGGAGATGAT 57.789 45.455 0.00 0.00 0.00 2.45
1120 1673 1.690633 GATGAGGAGGAGGTGGCCA 60.691 63.158 0.00 0.00 0.00 5.36
1154 1707 3.717294 ATTCACCGCCGCTTCCCT 61.717 61.111 0.00 0.00 0.00 4.20
1397 1950 3.611674 TGCTCGTTGGAGTGCGGA 61.612 61.111 0.00 0.00 42.53 5.54
1412 1965 0.605319 GCGGACATGGACCAAGTGAA 60.605 55.000 7.18 0.00 0.00 3.18
1720 2275 4.890499 AGATGAGGAGGAGAGGAACTTA 57.110 45.455 0.00 0.00 41.55 2.24
1826 2381 3.340814 TGATGAAGGCAAGAGAGGAAC 57.659 47.619 0.00 0.00 0.00 3.62
1865 2420 4.041567 TGGAGACAAAGCTTCTTATCACCA 59.958 41.667 0.00 6.83 37.44 4.17
1951 2506 3.491342 CGACTTGGAGGAGAGGATGATA 58.509 50.000 0.00 0.00 0.00 2.15
2035 2590 3.634397 TCCAAGAAGGACATGGATCAC 57.366 47.619 0.00 0.00 43.07 3.06
2036 2591 2.912295 TCCAAGAAGGACATGGATCACA 59.088 45.455 0.00 0.00 43.07 3.58
2077 2632 1.751924 GACTACAAGGAGGACATCGCT 59.248 52.381 0.00 0.00 0.00 4.93
2088 2643 1.686052 GGACATCGCTGAGAGGAAGAT 59.314 52.381 0.00 0.00 34.26 2.40
2221 2783 1.764723 CATGTGGTCTAGGAGATGGCA 59.235 52.381 0.00 0.00 0.00 4.92
2429 2991 0.930726 AGAACCCTCAAACCCAACCA 59.069 50.000 0.00 0.00 0.00 3.67
2433 2995 3.169512 ACCCTCAAACCCAACCATTAG 57.830 47.619 0.00 0.00 0.00 1.73
2471 3033 4.909088 TGGGTTTGAGGGTTCTAGTCTTTA 59.091 41.667 0.00 0.00 0.00 1.85
2546 3108 7.648039 TTAAAACTGCTTTAAGGGTTTGAGA 57.352 32.000 0.00 0.00 35.08 3.27
2578 3140 6.460399 GGGTTCTACTAGACATGCTCTTACAG 60.460 46.154 0.00 0.00 0.00 2.74
2579 3141 6.095720 GGTTCTACTAGACATGCTCTTACAGT 59.904 42.308 0.00 0.00 0.00 3.55
2580 3142 6.685527 TCTACTAGACATGCTCTTACAGTG 57.314 41.667 0.00 0.00 0.00 3.66
2581 3143 4.727507 ACTAGACATGCTCTTACAGTGG 57.272 45.455 0.00 0.00 0.00 4.00
2582 3144 4.090090 ACTAGACATGCTCTTACAGTGGT 58.910 43.478 0.00 0.00 0.00 4.16
2583 3145 3.325293 AGACATGCTCTTACAGTGGTG 57.675 47.619 0.00 0.00 0.00 4.17
2584 3146 2.634940 AGACATGCTCTTACAGTGGTGT 59.365 45.455 0.00 0.00 41.06 4.16
2585 3147 2.996621 GACATGCTCTTACAGTGGTGTC 59.003 50.000 0.00 0.00 38.19 3.67
2586 3148 1.995484 CATGCTCTTACAGTGGTGTCG 59.005 52.381 0.00 0.00 38.19 4.35
2587 3149 1.037493 TGCTCTTACAGTGGTGTCGT 58.963 50.000 0.00 0.00 38.19 4.34
2588 3150 1.000607 TGCTCTTACAGTGGTGTCGTC 60.001 52.381 0.00 0.00 38.19 4.20
2589 3151 1.269998 GCTCTTACAGTGGTGTCGTCT 59.730 52.381 0.00 0.00 38.19 4.18
2590 3152 2.486982 GCTCTTACAGTGGTGTCGTCTA 59.513 50.000 0.00 0.00 38.19 2.59
2591 3153 3.128938 GCTCTTACAGTGGTGTCGTCTAT 59.871 47.826 0.00 0.00 38.19 1.98
2592 3154 4.663166 CTCTTACAGTGGTGTCGTCTATG 58.337 47.826 0.00 0.00 38.19 2.23
2593 3155 2.933495 TACAGTGGTGTCGTCTATGC 57.067 50.000 0.00 0.00 38.19 3.14
2594 3156 1.257743 ACAGTGGTGTCGTCTATGCT 58.742 50.000 0.00 0.00 26.76 3.79
2595 3157 1.067565 ACAGTGGTGTCGTCTATGCTG 60.068 52.381 0.00 0.00 26.76 4.41
2596 3158 0.108615 AGTGGTGTCGTCTATGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
2597 3159 1.153842 TGGTGTCGTCTATGCTGCG 60.154 57.895 0.00 0.00 0.00 5.18
2598 3160 2.517450 GGTGTCGTCTATGCTGCGC 61.517 63.158 0.00 0.00 0.00 6.09
2599 3161 1.805539 GTGTCGTCTATGCTGCGCA 60.806 57.895 10.98 10.98 44.86 6.09
2600 3162 1.517039 TGTCGTCTATGCTGCGCAG 60.517 57.895 32.83 32.83 43.65 5.18
2613 3175 3.123620 CGCAGCAAGAGGTGAGCC 61.124 66.667 0.00 0.00 45.95 4.70
2614 3176 2.033141 GCAGCAAGAGGTGAGCCA 59.967 61.111 0.00 0.00 45.95 4.75
2615 3177 1.378250 GCAGCAAGAGGTGAGCCAT 60.378 57.895 0.00 0.00 45.95 4.40
2616 3178 1.654954 GCAGCAAGAGGTGAGCCATG 61.655 60.000 0.00 0.00 45.95 3.66
2617 3179 0.322277 CAGCAAGAGGTGAGCCATGT 60.322 55.000 0.00 0.00 45.95 3.21
2618 3180 0.322277 AGCAAGAGGTGAGCCATGTG 60.322 55.000 0.00 0.00 37.19 3.21
2619 3181 1.310933 GCAAGAGGTGAGCCATGTGG 61.311 60.000 0.00 0.00 37.19 4.17
2620 3182 0.037303 CAAGAGGTGAGCCATGTGGT 59.963 55.000 0.35 0.00 37.57 4.16
2621 3183 0.037303 AAGAGGTGAGCCATGTGGTG 59.963 55.000 0.35 0.00 37.57 4.17
2640 3202 0.831307 GGTAAGCTACCTCTGTGGGG 59.169 60.000 0.33 0.00 45.52 4.96
2641 3203 1.569653 GTAAGCTACCTCTGTGGGGT 58.430 55.000 0.33 0.00 41.11 4.95
2642 3204 1.207329 GTAAGCTACCTCTGTGGGGTG 59.793 57.143 0.00 0.00 41.11 4.61
2643 3205 1.201429 AAGCTACCTCTGTGGGGTGG 61.201 60.000 0.00 0.00 41.11 4.61
2644 3206 2.670148 GCTACCTCTGTGGGGTGGG 61.670 68.421 0.00 0.00 41.11 4.61
2645 3207 2.609610 TACCTCTGTGGGGTGGGC 60.610 66.667 0.00 0.00 41.11 5.36
2659 3221 2.362375 GGGCGCCATCCCAGAAAA 60.362 61.111 30.85 0.00 45.82 2.29
2660 3222 2.418083 GGGCGCCATCCCAGAAAAG 61.418 63.158 30.85 0.00 45.82 2.27
2661 3223 2.418083 GGCGCCATCCCAGAAAAGG 61.418 63.158 24.80 0.00 0.00 3.11
2662 3224 3.068729 GCGCCATCCCAGAAAAGGC 62.069 63.158 0.00 0.00 41.86 4.35
2663 3225 3.200522 GCCATCCCAGAAAAGGCG 58.799 61.111 0.00 0.00 35.42 5.52
2664 3226 1.378514 GCCATCCCAGAAAAGGCGA 60.379 57.895 0.00 0.00 35.42 5.54
2665 3227 1.379642 GCCATCCCAGAAAAGGCGAG 61.380 60.000 0.00 0.00 35.42 5.03
2666 3228 1.379642 CCATCCCAGAAAAGGCGAGC 61.380 60.000 0.00 0.00 0.00 5.03
2667 3229 1.077429 ATCCCAGAAAAGGCGAGCC 60.077 57.895 5.89 5.89 0.00 4.70
2668 3230 1.852157 ATCCCAGAAAAGGCGAGCCA 61.852 55.000 17.18 0.00 38.92 4.75
2669 3231 1.603455 CCCAGAAAAGGCGAGCCAA 60.603 57.895 17.18 0.00 38.92 4.52
2670 3232 1.178534 CCCAGAAAAGGCGAGCCAAA 61.179 55.000 17.18 0.00 38.92 3.28
2671 3233 0.242017 CCAGAAAAGGCGAGCCAAAG 59.758 55.000 17.18 0.02 38.92 2.77
2672 3234 0.242017 CAGAAAAGGCGAGCCAAAGG 59.758 55.000 17.18 0.00 38.92 3.11
2673 3235 0.895559 AGAAAAGGCGAGCCAAAGGG 60.896 55.000 17.18 0.00 38.92 3.95
2674 3236 1.152546 AAAAGGCGAGCCAAAGGGT 60.153 52.632 17.18 0.00 38.92 4.34
2675 3237 0.759060 AAAAGGCGAGCCAAAGGGTT 60.759 50.000 17.18 0.00 38.92 4.11
2676 3238 1.179174 AAAGGCGAGCCAAAGGGTTC 61.179 55.000 17.18 0.00 40.74 3.62
2677 3239 2.034221 GGCGAGCCAAAGGGTTCT 59.966 61.111 9.58 0.00 41.88 3.01
2678 3240 2.041115 GGCGAGCCAAAGGGTTCTC 61.041 63.158 9.58 0.00 41.88 2.87
2679 3241 2.391389 GCGAGCCAAAGGGTTCTCG 61.391 63.158 6.18 6.18 44.65 4.04
2680 3242 2.391389 CGAGCCAAAGGGTTCTCGC 61.391 63.158 0.00 0.00 41.88 5.03
2681 3243 2.358737 AGCCAAAGGGTTCTCGCG 60.359 61.111 0.00 0.00 36.17 5.87
2682 3244 2.668550 GCCAAAGGGTTCTCGCGT 60.669 61.111 5.77 0.00 36.17 6.01
2683 3245 1.375013 GCCAAAGGGTTCTCGCGTA 60.375 57.895 5.77 0.00 36.17 4.42
2684 3246 1.359459 GCCAAAGGGTTCTCGCGTAG 61.359 60.000 5.77 2.22 36.17 3.51
2685 3247 0.739813 CCAAAGGGTTCTCGCGTAGG 60.740 60.000 5.77 0.00 0.00 3.18
2686 3248 0.037605 CAAAGGGTTCTCGCGTAGGT 60.038 55.000 5.77 0.00 0.00 3.08
2687 3249 0.683412 AAAGGGTTCTCGCGTAGGTT 59.317 50.000 5.77 0.00 0.00 3.50
2688 3250 0.683412 AAGGGTTCTCGCGTAGGTTT 59.317 50.000 5.77 0.00 0.00 3.27
2689 3251 0.245813 AGGGTTCTCGCGTAGGTTTC 59.754 55.000 5.77 0.00 0.00 2.78
2690 3252 0.738762 GGGTTCTCGCGTAGGTTTCC 60.739 60.000 5.77 1.03 0.00 3.13
2691 3253 0.037975 GGTTCTCGCGTAGGTTTCCA 60.038 55.000 5.77 0.00 0.00 3.53
2692 3254 1.066136 GTTCTCGCGTAGGTTTCCAC 58.934 55.000 5.77 0.00 0.00 4.02
2693 3255 0.037975 TTCTCGCGTAGGTTTCCACC 60.038 55.000 5.77 0.00 44.67 4.61
2702 3264 2.625375 GGTTTCCACCGTCTTCACC 58.375 57.895 0.00 0.00 31.60 4.02
2703 3265 0.179040 GGTTTCCACCGTCTTCACCA 60.179 55.000 0.00 0.00 31.60 4.17
2704 3266 0.942252 GTTTCCACCGTCTTCACCAC 59.058 55.000 0.00 0.00 0.00 4.16
2705 3267 0.542333 TTTCCACCGTCTTCACCACA 59.458 50.000 0.00 0.00 0.00 4.17
2706 3268 0.542333 TTCCACCGTCTTCACCACAA 59.458 50.000 0.00 0.00 0.00 3.33
2707 3269 0.542333 TCCACCGTCTTCACCACAAA 59.458 50.000 0.00 0.00 0.00 2.83
2708 3270 0.944386 CCACCGTCTTCACCACAAAG 59.056 55.000 0.00 0.00 0.00 2.77
2709 3271 1.474320 CCACCGTCTTCACCACAAAGA 60.474 52.381 0.00 0.00 0.00 2.52
2710 3272 2.285083 CACCGTCTTCACCACAAAGAA 58.715 47.619 0.00 0.00 34.68 2.52
2711 3273 2.287915 CACCGTCTTCACCACAAAGAAG 59.712 50.000 0.00 0.00 41.95 2.85
2712 3274 1.264288 CCGTCTTCACCACAAAGAAGC 59.736 52.381 0.00 0.00 40.72 3.86
2713 3275 1.070577 CGTCTTCACCACAAAGAAGCG 60.071 52.381 0.00 0.00 40.72 4.68
2714 3276 1.940613 GTCTTCACCACAAAGAAGCGT 59.059 47.619 0.00 0.00 40.72 5.07
2715 3277 1.939934 TCTTCACCACAAAGAAGCGTG 59.060 47.619 0.00 0.00 40.72 5.34
2716 3278 1.670811 CTTCACCACAAAGAAGCGTGT 59.329 47.619 0.00 0.00 35.35 4.49
2717 3279 1.745232 TCACCACAAAGAAGCGTGTT 58.255 45.000 0.00 0.00 0.00 3.32
2718 3280 1.400142 TCACCACAAAGAAGCGTGTTG 59.600 47.619 0.00 0.00 0.00 3.33
2719 3281 0.738389 ACCACAAAGAAGCGTGTTGG 59.262 50.000 0.00 0.00 0.00 3.77
2720 3282 0.030638 CCACAAAGAAGCGTGTTGGG 59.969 55.000 0.00 0.00 0.00 4.12
2721 3283 0.594796 CACAAAGAAGCGTGTTGGGC 60.595 55.000 0.00 0.00 0.00 5.36
2722 3284 1.007387 CAAAGAAGCGTGTTGGGCC 60.007 57.895 0.00 0.00 0.00 5.80
2723 3285 2.200337 AAAGAAGCGTGTTGGGCCC 61.200 57.895 17.59 17.59 0.00 5.80
2724 3286 2.640581 AAAGAAGCGTGTTGGGCCCT 62.641 55.000 25.70 0.00 0.00 5.19
2725 3287 3.056328 GAAGCGTGTTGGGCCCTC 61.056 66.667 25.70 16.72 0.00 4.30
2726 3288 4.660938 AAGCGTGTTGGGCCCTCC 62.661 66.667 25.70 14.06 0.00 4.30
2734 3296 4.263572 TGGGCCCTCCACAACACG 62.264 66.667 25.70 0.00 41.46 4.49
2735 3297 3.948719 GGGCCCTCCACAACACGA 61.949 66.667 17.04 0.00 35.00 4.35
2736 3298 2.358737 GGCCCTCCACAACACGAG 60.359 66.667 0.00 0.00 0.00 4.18
2737 3299 2.358737 GCCCTCCACAACACGAGG 60.359 66.667 0.00 0.00 44.59 4.63
2738 3300 3.148084 CCCTCCACAACACGAGGT 58.852 61.111 2.63 0.00 43.65 3.85
2739 3301 1.823169 GCCCTCCACAACACGAGGTA 61.823 60.000 2.63 0.00 43.65 3.08
2740 3302 0.682852 CCCTCCACAACACGAGGTAA 59.317 55.000 2.63 0.00 43.65 2.85
2741 3303 1.337823 CCCTCCACAACACGAGGTAAG 60.338 57.143 2.63 0.00 43.65 2.34
2742 3304 1.616865 CCTCCACAACACGAGGTAAGA 59.383 52.381 0.00 0.00 40.77 2.10
2743 3305 2.036733 CCTCCACAACACGAGGTAAGAA 59.963 50.000 0.00 0.00 40.77 2.52
2744 3306 3.318017 CTCCACAACACGAGGTAAGAAG 58.682 50.000 0.00 0.00 0.00 2.85
2745 3307 2.960384 TCCACAACACGAGGTAAGAAGA 59.040 45.455 0.00 0.00 0.00 2.87
2746 3308 3.005472 TCCACAACACGAGGTAAGAAGAG 59.995 47.826 0.00 0.00 0.00 2.85
2747 3309 2.731976 CACAACACGAGGTAAGAAGAGC 59.268 50.000 0.00 0.00 0.00 4.09
2748 3310 2.364324 ACAACACGAGGTAAGAAGAGCA 59.636 45.455 0.00 0.00 0.00 4.26
2749 3311 3.006967 ACAACACGAGGTAAGAAGAGCAT 59.993 43.478 0.00 0.00 0.00 3.79
2750 3312 3.512033 ACACGAGGTAAGAAGAGCATC 57.488 47.619 0.00 0.00 0.00 3.91
2751 3313 2.166664 ACACGAGGTAAGAAGAGCATCC 59.833 50.000 0.00 0.00 33.66 3.51
2752 3314 2.428890 CACGAGGTAAGAAGAGCATCCT 59.571 50.000 0.00 0.00 33.66 3.24
2753 3315 2.691011 ACGAGGTAAGAAGAGCATCCTC 59.309 50.000 0.00 0.00 38.33 3.71
2763 3325 2.831565 AGAGCATCCTCTTCAAGACCT 58.168 47.619 0.00 0.00 46.16 3.85
2764 3326 2.500910 AGAGCATCCTCTTCAAGACCTG 59.499 50.000 0.00 0.00 46.16 4.00
2765 3327 1.065564 AGCATCCTCTTCAAGACCTGC 60.066 52.381 3.80 3.80 0.00 4.85
2766 3328 1.339438 GCATCCTCTTCAAGACCTGCA 60.339 52.381 6.32 0.00 0.00 4.41
2767 3329 2.877300 GCATCCTCTTCAAGACCTGCAA 60.877 50.000 6.32 0.00 0.00 4.08
2768 3330 3.415212 CATCCTCTTCAAGACCTGCAAA 58.585 45.455 0.00 0.00 0.00 3.68
2769 3331 3.131709 TCCTCTTCAAGACCTGCAAAG 57.868 47.619 0.00 0.00 0.00 2.77
2770 3332 1.538950 CCTCTTCAAGACCTGCAAAGC 59.461 52.381 0.00 0.00 0.00 3.51
2771 3333 1.538950 CTCTTCAAGACCTGCAAAGCC 59.461 52.381 0.00 0.00 0.00 4.35
2772 3334 0.239347 CTTCAAGACCTGCAAAGCCG 59.761 55.000 0.00 0.00 0.00 5.52
2773 3335 1.795170 TTCAAGACCTGCAAAGCCGC 61.795 55.000 0.00 0.00 0.00 6.53
2774 3336 2.203337 AAGACCTGCAAAGCCGCA 60.203 55.556 0.00 0.00 40.32 5.69
2775 3337 1.827789 AAGACCTGCAAAGCCGCAA 60.828 52.632 0.00 0.00 42.45 4.85
2776 3338 1.799258 AAGACCTGCAAAGCCGCAAG 61.799 55.000 0.00 0.00 42.45 4.01
2777 3339 3.903932 GACCTGCAAAGCCGCAAGC 62.904 63.158 0.00 0.00 42.45 4.01
2788 3350 2.497107 GCCGCAAGCATCAATACAAT 57.503 45.000 0.00 0.00 42.97 2.71
2789 3351 2.388121 GCCGCAAGCATCAATACAATC 58.612 47.619 0.00 0.00 42.97 2.67
2790 3352 2.859806 GCCGCAAGCATCAATACAATCC 60.860 50.000 0.00 0.00 42.97 3.01
2791 3353 2.620115 CCGCAAGCATCAATACAATCCT 59.380 45.455 0.00 0.00 0.00 3.24
2792 3354 3.304257 CCGCAAGCATCAATACAATCCTC 60.304 47.826 0.00 0.00 0.00 3.71
2793 3355 3.313249 CGCAAGCATCAATACAATCCTCA 59.687 43.478 0.00 0.00 0.00 3.86
2794 3356 4.604976 GCAAGCATCAATACAATCCTCAC 58.395 43.478 0.00 0.00 0.00 3.51
2795 3357 4.498682 GCAAGCATCAATACAATCCTCACC 60.499 45.833 0.00 0.00 0.00 4.02
2796 3358 3.470709 AGCATCAATACAATCCTCACCG 58.529 45.455 0.00 0.00 0.00 4.94
2797 3359 2.549754 GCATCAATACAATCCTCACCGG 59.450 50.000 0.00 0.00 0.00 5.28
2798 3360 2.325583 TCAATACAATCCTCACCGGC 57.674 50.000 0.00 0.00 0.00 6.13
2799 3361 1.557371 TCAATACAATCCTCACCGGCA 59.443 47.619 0.00 0.00 0.00 5.69
2800 3362 1.670811 CAATACAATCCTCACCGGCAC 59.329 52.381 0.00 0.00 0.00 5.01
2801 3363 0.908910 ATACAATCCTCACCGGCACA 59.091 50.000 0.00 0.00 0.00 4.57
2802 3364 0.036765 TACAATCCTCACCGGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2803 3365 1.302431 CAATCCTCACCGGCACACA 60.302 57.895 0.00 0.00 0.00 3.72
2804 3366 1.302511 AATCCTCACCGGCACACAC 60.303 57.895 0.00 0.00 0.00 3.82
2805 3367 2.748058 AATCCTCACCGGCACACACC 62.748 60.000 0.00 0.00 0.00 4.16
2806 3368 4.248842 CCTCACCGGCACACACCA 62.249 66.667 0.00 0.00 0.00 4.17
2807 3369 2.032528 CTCACCGGCACACACCAT 59.967 61.111 0.00 0.00 0.00 3.55
2808 3370 2.281414 TCACCGGCACACACCATG 60.281 61.111 0.00 0.00 0.00 3.66
2809 3371 4.041917 CACCGGCACACACCATGC 62.042 66.667 0.00 0.00 42.62 4.06
2812 3374 3.353029 CGGCACACACCATGCGAA 61.353 61.111 0.00 0.00 44.37 4.70
2813 3375 2.255252 GGCACACACCATGCGAAC 59.745 61.111 0.00 0.00 44.37 3.95
2814 3376 2.551006 GGCACACACCATGCGAACA 61.551 57.895 0.00 0.00 44.37 3.18
2815 3377 1.081906 GCACACACCATGCGAACAG 60.082 57.895 0.00 0.00 32.45 3.16
2816 3378 1.575922 CACACACCATGCGAACAGG 59.424 57.895 0.00 0.00 0.00 4.00
2817 3379 2.260869 ACACACCATGCGAACAGGC 61.261 57.895 0.00 0.00 0.00 4.85
2818 3380 1.968017 CACACCATGCGAACAGGCT 60.968 57.895 0.00 0.00 0.00 4.58
2819 3381 0.673333 CACACCATGCGAACAGGCTA 60.673 55.000 0.00 0.00 0.00 3.93
2820 3382 0.673644 ACACCATGCGAACAGGCTAC 60.674 55.000 0.00 0.00 0.00 3.58
2821 3383 1.447838 ACCATGCGAACAGGCTACG 60.448 57.895 0.00 0.00 0.00 3.51
2822 3384 1.447838 CCATGCGAACAGGCTACGT 60.448 57.895 0.00 0.00 0.00 3.57
2823 3385 0.179121 CCATGCGAACAGGCTACGTA 60.179 55.000 0.00 0.00 0.00 3.57
2824 3386 0.921347 CATGCGAACAGGCTACGTAC 59.079 55.000 0.00 0.00 0.00 3.67
2825 3387 0.528924 ATGCGAACAGGCTACGTACA 59.471 50.000 0.00 0.00 0.00 2.90
2826 3388 0.109458 TGCGAACAGGCTACGTACAG 60.109 55.000 0.00 0.00 0.00 2.74
2827 3389 0.169672 GCGAACAGGCTACGTACAGA 59.830 55.000 0.00 0.00 0.00 3.41
2828 3390 1.401931 GCGAACAGGCTACGTACAGAA 60.402 52.381 0.00 0.00 0.00 3.02
2829 3391 2.734492 GCGAACAGGCTACGTACAGAAT 60.734 50.000 0.00 0.00 0.00 2.40
2838 3400 6.693545 CAGGCTACGTACAGAATAGAGAAAAG 59.306 42.308 0.00 0.00 0.00 2.27
2840 3402 7.555554 AGGCTACGTACAGAATAGAGAAAAGTA 59.444 37.037 0.00 0.00 0.00 2.24
2853 3415 8.788325 ATAGAGAAAAGTACACATTACAACCC 57.212 34.615 0.00 0.00 0.00 4.11
2855 3417 7.970102 AGAGAAAAGTACACATTACAACCCTA 58.030 34.615 0.00 0.00 0.00 3.53
2875 3437 5.768164 CCCTAAACTAACCACACAGTTTGAT 59.232 40.000 9.37 0.00 43.13 2.57
2877 3439 7.610305 CCCTAAACTAACCACACAGTTTGATAT 59.390 37.037 9.37 0.00 43.13 1.63
2891 3453 7.390440 CACAGTTTGATATTCAACCCTCAACTA 59.610 37.037 0.00 0.00 35.89 2.24
2909 3649 4.198028 ACTACAAAACCGGTCATCCTAC 57.802 45.455 8.04 0.00 0.00 3.18
2914 3654 1.269703 AACCGGTCATCCTACACCCC 61.270 60.000 8.04 0.00 0.00 4.95
2921 3661 2.762327 GTCATCCTACACCCCGAACTAA 59.238 50.000 0.00 0.00 0.00 2.24
2934 3674 3.179830 CCGAACTAATCACTCGGTTCAG 58.820 50.000 1.61 0.00 45.62 3.02
2980 3720 2.948979 ACTCATTTGAGCGGTTTTGACA 59.051 40.909 7.48 0.00 45.79 3.58
2981 3721 3.003689 ACTCATTTGAGCGGTTTTGACAG 59.996 43.478 7.48 0.00 45.79 3.51
2982 3722 3.210227 TCATTTGAGCGGTTTTGACAGA 58.790 40.909 0.00 0.00 0.00 3.41
2984 3724 5.000591 TCATTTGAGCGGTTTTGACAGATA 58.999 37.500 0.00 0.00 0.00 1.98
3008 3748 3.329300 ACAGTGCCATGTCACCTTC 57.671 52.632 2.67 0.00 37.68 3.46
3011 3751 1.059098 AGTGCCATGTCACCTTCTGA 58.941 50.000 2.67 0.00 37.68 3.27
3075 3818 9.447157 CCTCATTCTCTTTGTTCTATCTTTCTT 57.553 33.333 0.00 0.00 0.00 2.52
3092 3835 7.525158 TCTTTCTTTTGGAATACCCCTAGAT 57.475 36.000 0.00 0.00 33.53 1.98
3097 3840 2.605257 TGGAATACCCCTAGATGACCG 58.395 52.381 0.00 0.00 34.81 4.79
3099 3842 1.275573 GAATACCCCTAGATGACCGGC 59.724 57.143 0.00 0.00 0.00 6.13
3102 3845 2.423446 CCCTAGATGACCGGCTGC 59.577 66.667 0.00 0.00 0.00 5.25
3115 3858 1.672356 GGCTGCACCAACGTGAGAT 60.672 57.895 0.50 0.00 43.14 2.75
3116 3859 1.237285 GGCTGCACCAACGTGAGATT 61.237 55.000 0.50 0.00 43.14 2.40
3117 3860 0.166814 GCTGCACCAACGTGAGATTC 59.833 55.000 0.00 0.00 43.14 2.52
3121 3864 1.996191 GCACCAACGTGAGATTCTCTC 59.004 52.381 14.54 10.04 43.14 3.20
3140 3883 3.936453 TCTCACGTAGCTCTCTTTCTCTC 59.064 47.826 0.00 0.00 0.00 3.20
3142 3885 3.936453 TCACGTAGCTCTCTTTCTCTCTC 59.064 47.826 0.00 0.00 0.00 3.20
3144 3887 3.938963 ACGTAGCTCTCTTTCTCTCTCTG 59.061 47.826 0.00 0.00 0.00 3.35
3154 3897 7.232188 TCTCTTTCTCTCTCTGTAACTACCAA 58.768 38.462 0.00 0.00 0.00 3.67
3157 3900 5.584253 TCTCTCTCTGTAACTACCAATGC 57.416 43.478 0.00 0.00 0.00 3.56
3161 3904 5.422012 TCTCTCTGTAACTACCAATGCATGA 59.578 40.000 0.00 0.00 0.00 3.07
3178 3921 4.808077 CATGATTGCACGAGCTTATCTT 57.192 40.909 6.36 5.03 42.74 2.40
3181 3924 4.445453 TGATTGCACGAGCTTATCTTGAT 58.555 39.130 6.36 0.00 42.74 2.57
3190 3933 4.505922 CGAGCTTATCTTGATGAGTTGGTC 59.494 45.833 0.00 0.00 0.00 4.02
3191 3934 5.423015 GAGCTTATCTTGATGAGTTGGTCA 58.577 41.667 0.00 0.00 40.38 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.370718 CAGTTTGTAATCAAGGTGGTACTACC 59.629 42.308 20.19 20.19 41.17 3.18
4 5 6.043474 ACCAGTTTGTAATCAAGGTGGTACTA 59.957 38.462 11.78 0.00 43.43 1.82
5 6 5.163131 ACCAGTTTGTAATCAAGGTGGTACT 60.163 40.000 11.78 0.00 43.43 2.73
6 7 5.067954 ACCAGTTTGTAATCAAGGTGGTAC 58.932 41.667 11.78 0.00 43.43 3.34
7 8 5.313280 ACCAGTTTGTAATCAAGGTGGTA 57.687 39.130 11.78 0.00 43.43 3.25
8 9 4.178956 ACCAGTTTGTAATCAAGGTGGT 57.821 40.909 9.16 9.16 41.97 4.16
9 10 6.038271 GCTATACCAGTTTGTAATCAAGGTGG 59.962 42.308 0.00 8.25 40.77 4.61
10 11 6.823689 AGCTATACCAGTTTGTAATCAAGGTG 59.176 38.462 0.00 0.00 33.61 4.00
11 12 6.823689 CAGCTATACCAGTTTGTAATCAAGGT 59.176 38.462 0.00 0.00 35.08 3.50
12 13 6.260936 CCAGCTATACCAGTTTGTAATCAAGG 59.739 42.308 0.00 0.00 34.88 3.61
13 14 6.238484 GCCAGCTATACCAGTTTGTAATCAAG 60.238 42.308 0.00 0.00 34.88 3.02
14 15 5.588648 GCCAGCTATACCAGTTTGTAATCAA 59.411 40.000 0.00 0.00 0.00 2.57
15 16 5.123227 GCCAGCTATACCAGTTTGTAATCA 58.877 41.667 0.00 0.00 0.00 2.57
16 17 4.515567 GGCCAGCTATACCAGTTTGTAATC 59.484 45.833 0.00 0.00 0.00 1.75
17 18 4.461198 GGCCAGCTATACCAGTTTGTAAT 58.539 43.478 0.00 0.00 0.00 1.89
18 19 3.371166 GGGCCAGCTATACCAGTTTGTAA 60.371 47.826 4.39 0.00 0.00 2.41
19 20 2.171870 GGGCCAGCTATACCAGTTTGTA 59.828 50.000 4.39 0.00 0.00 2.41
20 21 1.064685 GGGCCAGCTATACCAGTTTGT 60.065 52.381 4.39 0.00 0.00 2.83
21 22 1.680338 GGGCCAGCTATACCAGTTTG 58.320 55.000 4.39 0.00 0.00 2.93
22 23 0.551396 GGGGCCAGCTATACCAGTTT 59.449 55.000 4.39 0.00 0.00 2.66
23 24 0.327576 AGGGGCCAGCTATACCAGTT 60.328 55.000 4.39 0.00 0.00 3.16
24 25 0.764752 GAGGGGCCAGCTATACCAGT 60.765 60.000 4.39 0.00 0.00 4.00
25 26 0.472734 AGAGGGGCCAGCTATACCAG 60.473 60.000 4.39 0.00 0.00 4.00
26 27 0.030092 AAGAGGGGCCAGCTATACCA 60.030 55.000 4.39 0.00 0.00 3.25
27 28 1.903183 CTAAGAGGGGCCAGCTATACC 59.097 57.143 4.39 0.00 0.00 2.73
28 29 2.829120 CTCTAAGAGGGGCCAGCTATAC 59.171 54.545 4.39 0.00 0.00 1.47
29 30 2.823535 GCTCTAAGAGGGGCCAGCTATA 60.824 54.545 4.39 0.00 0.00 1.31
30 31 2.022718 CTCTAAGAGGGGCCAGCTAT 57.977 55.000 4.39 0.00 0.00 2.97
31 32 0.760945 GCTCTAAGAGGGGCCAGCTA 60.761 60.000 4.39 0.00 0.00 3.32
32 33 2.069430 GCTCTAAGAGGGGCCAGCT 61.069 63.158 4.39 0.00 0.00 4.24
33 34 1.915078 TTGCTCTAAGAGGGGCCAGC 61.915 60.000 4.39 4.05 0.00 4.85
34 35 0.179936 CTTGCTCTAAGAGGGGCCAG 59.820 60.000 4.39 0.00 38.76 4.85
35 36 0.547712 ACTTGCTCTAAGAGGGGCCA 60.548 55.000 4.39 0.00 39.76 5.36
36 37 0.179234 GACTTGCTCTAAGAGGGGCC 59.821 60.000 0.00 0.00 39.76 5.80
37 38 1.199615 AGACTTGCTCTAAGAGGGGC 58.800 55.000 0.00 0.00 39.76 5.80
38 39 3.637769 ACTAGACTTGCTCTAAGAGGGG 58.362 50.000 0.00 0.00 39.76 4.79
39 40 5.686753 TCTACTAGACTTGCTCTAAGAGGG 58.313 45.833 0.00 0.00 39.76 4.30
40 41 5.238650 GCTCTACTAGACTTGCTCTAAGAGG 59.761 48.000 0.00 0.00 37.14 3.69
41 42 5.238650 GGCTCTACTAGACTTGCTCTAAGAG 59.761 48.000 0.00 6.09 38.49 2.85
42 43 5.127491 GGCTCTACTAGACTTGCTCTAAGA 58.873 45.833 0.00 0.00 39.76 2.10
43 44 4.277423 GGGCTCTACTAGACTTGCTCTAAG 59.723 50.000 0.00 0.00 42.30 2.18
71 72 4.775780 AGTTATTTTTAGGGGTTTGAGGGC 59.224 41.667 0.00 0.00 0.00 5.19
259 263 1.684869 GGATGAAATTTCCCTCCCGCA 60.685 52.381 19.28 1.14 0.00 5.69
744 748 4.785453 GGAGGAGGCGGTGCAAGG 62.785 72.222 0.00 0.00 0.00 3.61
745 749 4.785453 GGGAGGAGGCGGTGCAAG 62.785 72.222 0.00 0.00 0.00 4.01
888 1441 1.674322 CGGTTTCTTCATGGCCGGT 60.674 57.895 1.90 0.00 38.86 5.28
958 1511 0.396435 TCCTTGAACACCTCGTGCAT 59.604 50.000 0.00 0.00 36.98 3.96
959 1512 0.179234 TTCCTTGAACACCTCGTGCA 59.821 50.000 0.00 0.00 36.98 4.57
973 1526 1.203288 TGATGGGGTTGCCATTTCCTT 60.203 47.619 0.00 0.00 0.00 3.36
993 1546 1.123928 GGAGGAGGTCCATGAACGAT 58.876 55.000 0.00 0.00 46.10 3.73
1060 1613 3.394274 TCTTCCTCCAAGTCATCACCAAA 59.606 43.478 0.00 0.00 33.27 3.28
1098 1651 2.039070 GCCACCTCCTCCTCATCATCT 61.039 57.143 0.00 0.00 0.00 2.90
1104 1657 1.920325 CTTGGCCACCTCCTCCTCA 60.920 63.158 3.88 0.00 0.00 3.86
1120 1673 2.343625 GAATGCCTCCTCCCCTATCTT 58.656 52.381 0.00 0.00 0.00 2.40
1397 1950 2.881403 GCATCCTTCACTTGGTCCATGT 60.881 50.000 4.56 4.56 0.00 3.21
1720 2275 4.035102 GTTCCCTCGGGCTTGCCT 62.035 66.667 11.71 0.00 34.68 4.75
1826 2381 3.430218 GTCTCCAATGTCTTCGTTGTCAG 59.570 47.826 0.00 0.00 38.48 3.51
1865 2420 5.303259 AGCTTGACCTCTTTCTTCTTCTT 57.697 39.130 0.00 0.00 0.00 2.52
1951 2506 2.670939 ACCTTTGCCTCTTTGAGCTTT 58.329 42.857 0.00 0.00 0.00 3.51
2035 2590 2.835580 TCCACCATTGCAATTGGTTG 57.164 45.000 23.38 20.54 38.39 3.77
2036 2591 2.038820 CCTTCCACCATTGCAATTGGTT 59.961 45.455 23.38 11.31 32.95 3.67
2077 2632 3.099905 ACGGAACATCATCTTCCTCTCA 58.900 45.455 0.00 0.00 35.86 3.27
2221 2783 0.744281 CCAAAAAGTTGCACCTCGGT 59.256 50.000 0.00 0.00 33.01 4.69
2307 2869 9.965824 CTCTAAACAAACTACCAAATGACAATT 57.034 29.630 0.00 0.00 0.00 2.32
2429 2991 4.044191 ACCCAACCCTTAAACTGCTCTAAT 59.956 41.667 0.00 0.00 0.00 1.73
2433 2995 2.287977 ACCCAACCCTTAAACTGCTC 57.712 50.000 0.00 0.00 0.00 4.26
2471 3033 6.385759 ACTTTTAAGGATTGAAAAACAGGGGT 59.614 34.615 0.00 0.00 32.99 4.95
2546 3108 5.337652 GCATGTCTAGTAGAACCCTCAAACT 60.338 44.000 0.17 0.00 0.00 2.66
2578 3140 1.413767 CGCAGCATAGACGACACCAC 61.414 60.000 0.00 0.00 0.00 4.16
2579 3141 1.153842 CGCAGCATAGACGACACCA 60.154 57.895 0.00 0.00 0.00 4.17
2580 3142 3.693245 CGCAGCATAGACGACACC 58.307 61.111 0.00 0.00 0.00 4.16
2593 3155 2.357881 TCACCTCTTGCTGCGCAG 60.358 61.111 32.83 32.83 40.61 5.18
2594 3156 2.357881 CTCACCTCTTGCTGCGCA 60.358 61.111 10.98 10.98 36.47 6.09
2595 3157 3.797546 GCTCACCTCTTGCTGCGC 61.798 66.667 0.00 0.00 0.00 6.09
2596 3158 3.123620 GGCTCACCTCTTGCTGCG 61.124 66.667 0.00 0.00 0.00 5.18
2597 3159 1.378250 ATGGCTCACCTCTTGCTGC 60.378 57.895 0.00 0.00 36.63 5.25
2598 3160 0.322277 ACATGGCTCACCTCTTGCTG 60.322 55.000 0.00 0.00 36.63 4.41
2599 3161 0.322277 CACATGGCTCACCTCTTGCT 60.322 55.000 0.00 0.00 36.63 3.91
2600 3162 1.310933 CCACATGGCTCACCTCTTGC 61.311 60.000 0.00 0.00 36.63 4.01
2601 3163 0.037303 ACCACATGGCTCACCTCTTG 59.963 55.000 0.00 0.00 39.32 3.02
2602 3164 0.037303 CACCACATGGCTCACCTCTT 59.963 55.000 0.00 0.00 39.32 2.85
2603 3165 1.681666 CACCACATGGCTCACCTCT 59.318 57.895 0.00 0.00 39.32 3.69
2604 3166 1.377725 CCACCACATGGCTCACCTC 60.378 63.158 0.00 0.00 43.24 3.85
2605 3167 2.759114 CCACCACATGGCTCACCT 59.241 61.111 0.00 0.00 43.24 4.00
2622 3184 1.207329 CACCCCACAGAGGTAGCTTAC 59.793 57.143 0.00 0.00 35.24 2.34
2623 3185 1.568504 CACCCCACAGAGGTAGCTTA 58.431 55.000 0.00 0.00 35.24 3.09
2624 3186 1.201429 CCACCCCACAGAGGTAGCTT 61.201 60.000 0.00 0.00 35.24 3.74
2625 3187 1.613630 CCACCCCACAGAGGTAGCT 60.614 63.158 0.00 0.00 35.24 3.32
2626 3188 2.670148 CCCACCCCACAGAGGTAGC 61.670 68.421 0.00 0.00 35.24 3.58
2627 3189 2.670148 GCCCACCCCACAGAGGTAG 61.670 68.421 0.00 0.00 35.24 3.18
2628 3190 2.609610 GCCCACCCCACAGAGGTA 60.610 66.667 0.00 0.00 35.24 3.08
2643 3205 2.418083 CCTTTTCTGGGATGGCGCC 61.418 63.158 22.73 22.73 0.00 6.53
2644 3206 3.068729 GCCTTTTCTGGGATGGCGC 62.069 63.158 0.00 0.00 33.96 6.53
2645 3207 3.200522 GCCTTTTCTGGGATGGCG 58.799 61.111 0.00 0.00 33.96 5.69
2646 3208 1.378514 TCGCCTTTTCTGGGATGGC 60.379 57.895 0.00 0.00 40.14 4.40
2647 3209 1.379642 GCTCGCCTTTTCTGGGATGG 61.380 60.000 0.00 0.00 0.00 3.51
2648 3210 1.379642 GGCTCGCCTTTTCTGGGATG 61.380 60.000 0.00 0.00 0.00 3.51
2649 3211 1.077429 GGCTCGCCTTTTCTGGGAT 60.077 57.895 0.00 0.00 0.00 3.85
2650 3212 2.063015 TTGGCTCGCCTTTTCTGGGA 62.063 55.000 9.65 0.00 36.94 4.37
2651 3213 1.178534 TTTGGCTCGCCTTTTCTGGG 61.179 55.000 9.65 0.00 36.94 4.45
2652 3214 0.242017 CTTTGGCTCGCCTTTTCTGG 59.758 55.000 9.65 0.00 36.94 3.86
2653 3215 0.242017 CCTTTGGCTCGCCTTTTCTG 59.758 55.000 9.65 0.00 36.94 3.02
2654 3216 0.895559 CCCTTTGGCTCGCCTTTTCT 60.896 55.000 9.65 0.00 36.94 2.52
2655 3217 1.179174 ACCCTTTGGCTCGCCTTTTC 61.179 55.000 9.65 0.00 36.94 2.29
2656 3218 0.759060 AACCCTTTGGCTCGCCTTTT 60.759 50.000 9.65 0.00 36.94 2.27
2657 3219 1.152546 AACCCTTTGGCTCGCCTTT 60.153 52.632 9.65 0.00 36.94 3.11
2658 3220 1.603739 GAACCCTTTGGCTCGCCTT 60.604 57.895 9.65 0.00 36.94 4.35
2659 3221 2.034221 GAACCCTTTGGCTCGCCT 59.966 61.111 9.65 0.00 36.94 5.52
2660 3222 2.034221 AGAACCCTTTGGCTCGCC 59.966 61.111 0.00 0.00 31.68 5.54
2661 3223 2.391389 CGAGAACCCTTTGGCTCGC 61.391 63.158 0.00 0.00 42.82 5.03
2662 3224 3.876300 CGAGAACCCTTTGGCTCG 58.124 61.111 0.00 0.00 43.25 5.03
2663 3225 2.391389 CGCGAGAACCCTTTGGCTC 61.391 63.158 0.00 0.00 33.59 4.70
2664 3226 1.823169 TACGCGAGAACCCTTTGGCT 61.823 55.000 15.93 0.00 33.59 4.75
2665 3227 1.359459 CTACGCGAGAACCCTTTGGC 61.359 60.000 15.93 0.00 33.59 4.52
2666 3228 0.739813 CCTACGCGAGAACCCTTTGG 60.740 60.000 15.93 0.00 37.80 3.28
2667 3229 0.037605 ACCTACGCGAGAACCCTTTG 60.038 55.000 15.93 0.00 0.00 2.77
2668 3230 0.683412 AACCTACGCGAGAACCCTTT 59.317 50.000 15.93 0.00 0.00 3.11
2669 3231 0.683412 AAACCTACGCGAGAACCCTT 59.317 50.000 15.93 0.00 0.00 3.95
2670 3232 0.245813 GAAACCTACGCGAGAACCCT 59.754 55.000 15.93 0.00 0.00 4.34
2671 3233 0.738762 GGAAACCTACGCGAGAACCC 60.739 60.000 15.93 0.63 0.00 4.11
2672 3234 0.037975 TGGAAACCTACGCGAGAACC 60.038 55.000 15.93 7.27 0.00 3.62
2673 3235 1.066136 GTGGAAACCTACGCGAGAAC 58.934 55.000 15.93 0.00 0.00 3.01
2674 3236 0.037975 GGTGGAAACCTACGCGAGAA 60.038 55.000 15.93 0.00 0.00 2.87
2675 3237 1.588082 GGTGGAAACCTACGCGAGA 59.412 57.895 15.93 0.00 0.00 4.04
2676 3238 1.804326 CGGTGGAAACCTACGCGAG 60.804 63.158 15.93 5.77 0.00 5.03
2677 3239 2.259204 CGGTGGAAACCTACGCGA 59.741 61.111 15.93 0.00 0.00 5.87
2678 3240 2.048877 ACGGTGGAAACCTACGCG 60.049 61.111 3.53 3.53 0.00 6.01
2679 3241 0.320160 AAGACGGTGGAAACCTACGC 60.320 55.000 0.00 0.00 0.00 4.42
2680 3242 1.000060 TGAAGACGGTGGAAACCTACG 60.000 52.381 0.00 0.00 0.00 3.51
2681 3243 2.410939 GTGAAGACGGTGGAAACCTAC 58.589 52.381 0.00 0.00 0.00 3.18
2682 3244 1.345415 GGTGAAGACGGTGGAAACCTA 59.655 52.381 0.00 0.00 0.00 3.08
2683 3245 0.108019 GGTGAAGACGGTGGAAACCT 59.892 55.000 0.00 0.00 0.00 3.50
2684 3246 0.179040 TGGTGAAGACGGTGGAAACC 60.179 55.000 0.00 0.00 0.00 3.27
2685 3247 0.942252 GTGGTGAAGACGGTGGAAAC 59.058 55.000 0.00 0.00 0.00 2.78
2686 3248 0.542333 TGTGGTGAAGACGGTGGAAA 59.458 50.000 0.00 0.00 0.00 3.13
2687 3249 0.542333 TTGTGGTGAAGACGGTGGAA 59.458 50.000 0.00 0.00 0.00 3.53
2688 3250 0.542333 TTTGTGGTGAAGACGGTGGA 59.458 50.000 0.00 0.00 0.00 4.02
2689 3251 0.944386 CTTTGTGGTGAAGACGGTGG 59.056 55.000 0.00 0.00 0.00 4.61
2690 3252 1.948104 TCTTTGTGGTGAAGACGGTG 58.052 50.000 0.00 0.00 0.00 4.94
2691 3253 2.561569 CTTCTTTGTGGTGAAGACGGT 58.438 47.619 0.00 0.00 41.38 4.83
2692 3254 1.264288 GCTTCTTTGTGGTGAAGACGG 59.736 52.381 6.88 0.00 41.38 4.79
2693 3255 1.070577 CGCTTCTTTGTGGTGAAGACG 60.071 52.381 6.88 6.18 41.38 4.18
2694 3256 1.940613 ACGCTTCTTTGTGGTGAAGAC 59.059 47.619 6.88 0.00 41.38 3.01
2695 3257 1.939934 CACGCTTCTTTGTGGTGAAGA 59.060 47.619 6.88 0.00 41.38 2.87
2696 3258 1.670811 ACACGCTTCTTTGTGGTGAAG 59.329 47.619 0.00 0.00 40.39 3.02
2697 3259 1.745232 ACACGCTTCTTTGTGGTGAA 58.255 45.000 0.00 0.00 40.39 3.18
2698 3260 1.745232 AACACGCTTCTTTGTGGTGA 58.255 45.000 0.00 0.00 40.39 4.02
2699 3261 1.826327 CAACACGCTTCTTTGTGGTG 58.174 50.000 0.00 0.00 46.17 4.17
2700 3262 0.738389 CCAACACGCTTCTTTGTGGT 59.262 50.000 0.00 0.00 40.39 4.16
2701 3263 0.030638 CCCAACACGCTTCTTTGTGG 59.969 55.000 0.00 0.00 40.39 4.17
2702 3264 0.594796 GCCCAACACGCTTCTTTGTG 60.595 55.000 0.00 0.00 41.81 3.33
2703 3265 1.733526 GCCCAACACGCTTCTTTGT 59.266 52.632 0.00 0.00 0.00 2.83
2704 3266 1.007387 GGCCCAACACGCTTCTTTG 60.007 57.895 0.00 0.00 0.00 2.77
2705 3267 2.200337 GGGCCCAACACGCTTCTTT 61.200 57.895 19.95 0.00 0.00 2.52
2706 3268 2.597510 GGGCCCAACACGCTTCTT 60.598 61.111 19.95 0.00 0.00 2.52
2707 3269 3.553095 GAGGGCCCAACACGCTTCT 62.553 63.158 27.56 0.00 0.00 2.85
2708 3270 3.056328 GAGGGCCCAACACGCTTC 61.056 66.667 27.56 6.02 0.00 3.86
2709 3271 4.660938 GGAGGGCCCAACACGCTT 62.661 66.667 27.56 0.00 34.14 4.68
2717 3279 4.263572 CGTGTTGTGGAGGGCCCA 62.264 66.667 27.56 0.00 44.25 5.36
2718 3280 3.901797 CTCGTGTTGTGGAGGGCCC 62.902 68.421 16.46 16.46 0.00 5.80
2719 3281 2.358737 CTCGTGTTGTGGAGGGCC 60.359 66.667 0.00 0.00 0.00 5.80
2720 3282 2.358737 CCTCGTGTTGTGGAGGGC 60.359 66.667 0.00 0.00 44.94 5.19
2723 3285 3.005472 TCTTCTTACCTCGTGTTGTGGAG 59.995 47.826 0.00 0.00 35.17 3.86
2724 3286 2.960384 TCTTCTTACCTCGTGTTGTGGA 59.040 45.455 0.00 0.00 35.17 4.02
2725 3287 3.318017 CTCTTCTTACCTCGTGTTGTGG 58.682 50.000 0.00 0.00 37.26 4.17
2726 3288 2.731976 GCTCTTCTTACCTCGTGTTGTG 59.268 50.000 0.00 0.00 0.00 3.33
2727 3289 2.364324 TGCTCTTCTTACCTCGTGTTGT 59.636 45.455 0.00 0.00 0.00 3.32
2728 3290 3.026630 TGCTCTTCTTACCTCGTGTTG 57.973 47.619 0.00 0.00 0.00 3.33
2729 3291 3.368531 GGATGCTCTTCTTACCTCGTGTT 60.369 47.826 0.00 0.00 0.00 3.32
2730 3292 2.166664 GGATGCTCTTCTTACCTCGTGT 59.833 50.000 0.00 0.00 0.00 4.49
2731 3293 2.428890 AGGATGCTCTTCTTACCTCGTG 59.571 50.000 0.00 0.00 0.00 4.35
2732 3294 2.691011 GAGGATGCTCTTCTTACCTCGT 59.309 50.000 7.03 0.00 35.38 4.18
2733 3295 2.955660 AGAGGATGCTCTTCTTACCTCG 59.044 50.000 11.53 0.00 45.60 4.63
2742 3304 3.055240 CAGGTCTTGAAGAGGATGCTCTT 60.055 47.826 27.41 27.41 45.36 2.85
2743 3305 2.500910 CAGGTCTTGAAGAGGATGCTCT 59.499 50.000 11.53 11.53 34.76 4.09
2744 3306 2.903798 CAGGTCTTGAAGAGGATGCTC 58.096 52.381 6.03 6.03 0.00 4.26
2745 3307 1.065564 GCAGGTCTTGAAGAGGATGCT 60.066 52.381 15.13 0.00 0.00 3.79
2746 3308 1.339438 TGCAGGTCTTGAAGAGGATGC 60.339 52.381 15.40 15.40 32.58 3.91
2747 3309 2.775911 TGCAGGTCTTGAAGAGGATG 57.224 50.000 0.00 0.00 0.00 3.51
2748 3310 3.683802 CTTTGCAGGTCTTGAAGAGGAT 58.316 45.455 0.00 0.00 0.00 3.24
2749 3311 2.811873 GCTTTGCAGGTCTTGAAGAGGA 60.812 50.000 0.00 0.00 0.00 3.71
2750 3312 1.538950 GCTTTGCAGGTCTTGAAGAGG 59.461 52.381 0.00 0.00 0.00 3.69
2751 3313 1.538950 GGCTTTGCAGGTCTTGAAGAG 59.461 52.381 0.00 0.00 0.00 2.85
2752 3314 1.609208 GGCTTTGCAGGTCTTGAAGA 58.391 50.000 0.00 0.00 0.00 2.87
2753 3315 0.239347 CGGCTTTGCAGGTCTTGAAG 59.761 55.000 0.00 0.00 0.00 3.02
2754 3316 1.795170 GCGGCTTTGCAGGTCTTGAA 61.795 55.000 0.00 0.00 34.15 2.69
2755 3317 2.260869 GCGGCTTTGCAGGTCTTGA 61.261 57.895 0.00 0.00 34.15 3.02
2756 3318 2.256461 GCGGCTTTGCAGGTCTTG 59.744 61.111 0.00 0.00 34.15 3.02
2757 3319 2.203337 TGCGGCTTTGCAGGTCTT 60.203 55.556 0.00 0.00 40.62 3.01
2763 3325 2.085042 TTGATGCTTGCGGCTTTGCA 62.085 50.000 14.75 14.75 44.61 4.08
2764 3326 0.738412 ATTGATGCTTGCGGCTTTGC 60.738 50.000 0.00 3.55 42.39 3.68
2765 3327 2.187707 GTATTGATGCTTGCGGCTTTG 58.812 47.619 0.00 0.00 42.39 2.77
2766 3328 1.818060 TGTATTGATGCTTGCGGCTTT 59.182 42.857 0.00 0.00 42.39 3.51
2767 3329 1.462616 TGTATTGATGCTTGCGGCTT 58.537 45.000 0.00 0.00 42.39 4.35
2768 3330 1.462616 TTGTATTGATGCTTGCGGCT 58.537 45.000 0.00 0.00 42.39 5.52
2769 3331 2.388121 GATTGTATTGATGCTTGCGGC 58.612 47.619 0.00 0.00 42.22 6.53
2770 3332 2.620115 AGGATTGTATTGATGCTTGCGG 59.380 45.455 0.00 0.00 0.00 5.69
2771 3333 3.313249 TGAGGATTGTATTGATGCTTGCG 59.687 43.478 0.00 0.00 0.00 4.85
2772 3334 4.498682 GGTGAGGATTGTATTGATGCTTGC 60.499 45.833 0.00 0.00 0.00 4.01
2773 3335 4.260907 CGGTGAGGATTGTATTGATGCTTG 60.261 45.833 0.00 0.00 0.00 4.01
2774 3336 3.879295 CGGTGAGGATTGTATTGATGCTT 59.121 43.478 0.00 0.00 0.00 3.91
2775 3337 3.470709 CGGTGAGGATTGTATTGATGCT 58.529 45.455 0.00 0.00 0.00 3.79
2776 3338 2.549754 CCGGTGAGGATTGTATTGATGC 59.450 50.000 0.00 0.00 45.00 3.91
2777 3339 2.549754 GCCGGTGAGGATTGTATTGATG 59.450 50.000 1.90 0.00 45.00 3.07
2778 3340 2.172505 TGCCGGTGAGGATTGTATTGAT 59.827 45.455 1.90 0.00 45.00 2.57
2779 3341 1.557371 TGCCGGTGAGGATTGTATTGA 59.443 47.619 1.90 0.00 45.00 2.57
2780 3342 1.670811 GTGCCGGTGAGGATTGTATTG 59.329 52.381 1.90 0.00 45.00 1.90
2781 3343 1.280710 TGTGCCGGTGAGGATTGTATT 59.719 47.619 1.90 0.00 45.00 1.89
2782 3344 0.908910 TGTGCCGGTGAGGATTGTAT 59.091 50.000 1.90 0.00 45.00 2.29
2783 3345 0.036765 GTGTGCCGGTGAGGATTGTA 60.037 55.000 1.90 0.00 45.00 2.41
2784 3346 1.302511 GTGTGCCGGTGAGGATTGT 60.303 57.895 1.90 0.00 45.00 2.71
2785 3347 1.302431 TGTGTGCCGGTGAGGATTG 60.302 57.895 1.90 0.00 45.00 2.67
2786 3348 1.302511 GTGTGTGCCGGTGAGGATT 60.303 57.895 1.90 0.00 45.00 3.01
2787 3349 2.347490 GTGTGTGCCGGTGAGGAT 59.653 61.111 1.90 0.00 45.00 3.24
2788 3350 3.936203 GGTGTGTGCCGGTGAGGA 61.936 66.667 1.90 0.00 45.00 3.71
2789 3351 3.551496 ATGGTGTGTGCCGGTGAGG 62.551 63.158 1.90 0.00 44.97 3.86
2790 3352 2.032528 ATGGTGTGTGCCGGTGAG 59.967 61.111 1.90 0.00 0.00 3.51
2791 3353 2.281414 CATGGTGTGTGCCGGTGA 60.281 61.111 1.90 0.00 0.00 4.02
2792 3354 4.041917 GCATGGTGTGTGCCGGTG 62.042 66.667 1.90 0.00 36.61 4.94
2795 3357 3.353029 TTCGCATGGTGTGTGCCG 61.353 61.111 0.00 0.00 39.39 5.69
2796 3358 2.255252 GTTCGCATGGTGTGTGCC 59.745 61.111 0.00 0.00 39.39 5.01
2797 3359 1.081906 CTGTTCGCATGGTGTGTGC 60.082 57.895 0.00 0.00 38.23 4.57
2798 3360 1.575922 CCTGTTCGCATGGTGTGTG 59.424 57.895 0.00 0.00 39.73 3.82
2799 3361 2.260869 GCCTGTTCGCATGGTGTGT 61.261 57.895 0.00 0.00 0.00 3.72
2800 3362 0.673333 TAGCCTGTTCGCATGGTGTG 60.673 55.000 0.00 0.00 0.00 3.82
2801 3363 0.673644 GTAGCCTGTTCGCATGGTGT 60.674 55.000 0.00 0.00 0.00 4.16
2802 3364 1.695893 CGTAGCCTGTTCGCATGGTG 61.696 60.000 0.00 0.00 0.00 4.17
2803 3365 1.447838 CGTAGCCTGTTCGCATGGT 60.448 57.895 0.00 0.00 0.00 3.55
2804 3366 0.179121 TACGTAGCCTGTTCGCATGG 60.179 55.000 0.00 0.00 0.00 3.66
2805 3367 0.921347 GTACGTAGCCTGTTCGCATG 59.079 55.000 0.00 0.00 0.00 4.06
2806 3368 0.528924 TGTACGTAGCCTGTTCGCAT 59.471 50.000 0.00 0.00 0.00 4.73
2807 3369 0.109458 CTGTACGTAGCCTGTTCGCA 60.109 55.000 0.00 0.00 0.00 5.10
2808 3370 0.169672 TCTGTACGTAGCCTGTTCGC 59.830 55.000 0.00 0.00 0.00 4.70
2809 3371 2.624316 TTCTGTACGTAGCCTGTTCG 57.376 50.000 0.00 0.00 0.00 3.95
2810 3372 5.296283 TCTCTATTCTGTACGTAGCCTGTTC 59.704 44.000 0.00 0.00 0.00 3.18
2811 3373 5.191426 TCTCTATTCTGTACGTAGCCTGTT 58.809 41.667 0.00 0.00 0.00 3.16
2812 3374 4.778579 TCTCTATTCTGTACGTAGCCTGT 58.221 43.478 0.00 0.00 0.00 4.00
2813 3375 5.752892 TTCTCTATTCTGTACGTAGCCTG 57.247 43.478 0.00 0.00 0.00 4.85
2814 3376 6.377712 ACTTTTCTCTATTCTGTACGTAGCCT 59.622 38.462 0.00 0.00 0.00 4.58
2815 3377 6.562518 ACTTTTCTCTATTCTGTACGTAGCC 58.437 40.000 0.00 0.00 0.00 3.93
2816 3378 8.180267 TGTACTTTTCTCTATTCTGTACGTAGC 58.820 37.037 0.00 0.00 33.65 3.58
2817 3379 9.488124 GTGTACTTTTCTCTATTCTGTACGTAG 57.512 37.037 0.00 0.00 33.65 3.51
2818 3380 9.002600 TGTGTACTTTTCTCTATTCTGTACGTA 57.997 33.333 0.00 0.00 33.65 3.57
2819 3381 7.879070 TGTGTACTTTTCTCTATTCTGTACGT 58.121 34.615 0.00 0.00 33.65 3.57
2820 3382 8.912787 ATGTGTACTTTTCTCTATTCTGTACG 57.087 34.615 0.00 0.00 33.65 3.67
2827 3389 9.227777 GGGTTGTAATGTGTACTTTTCTCTATT 57.772 33.333 0.00 0.00 0.00 1.73
2828 3390 8.603304 AGGGTTGTAATGTGTACTTTTCTCTAT 58.397 33.333 0.00 0.00 0.00 1.98
2829 3391 7.970102 AGGGTTGTAATGTGTACTTTTCTCTA 58.030 34.615 0.00 0.00 0.00 2.43
2838 3400 7.661027 TGGTTAGTTTAGGGTTGTAATGTGTAC 59.339 37.037 0.00 0.00 0.00 2.90
2840 3402 6.487668 GTGGTTAGTTTAGGGTTGTAATGTGT 59.512 38.462 0.00 0.00 0.00 3.72
2855 3417 8.458573 TGAATATCAAACTGTGTGGTTAGTTT 57.541 30.769 0.00 0.00 45.25 2.66
2875 3437 5.470777 CGGTTTTGTAGTTGAGGGTTGAATA 59.529 40.000 0.00 0.00 0.00 1.75
2877 3439 3.628487 CGGTTTTGTAGTTGAGGGTTGAA 59.372 43.478 0.00 0.00 0.00 2.69
2891 3453 2.551504 GGTGTAGGATGACCGGTTTTGT 60.552 50.000 9.42 0.00 41.83 2.83
2909 3649 1.922570 CGAGTGATTAGTTCGGGGTG 58.077 55.000 0.00 0.00 0.00 4.61
2914 3654 4.092771 TCTGAACCGAGTGATTAGTTCG 57.907 45.455 0.00 0.00 41.17 3.95
2921 3661 4.003648 GGTTGATTTCTGAACCGAGTGAT 58.996 43.478 0.00 0.00 32.66 3.06
2934 3674 1.064685 ACCGGATGGAGGGTTGATTTC 60.065 52.381 9.46 0.00 39.21 2.17
2980 3720 2.573462 ACATGGCACTGTCCAGTTATCT 59.427 45.455 0.00 0.00 40.20 1.98
2981 3721 2.939103 GACATGGCACTGTCCAGTTATC 59.061 50.000 15.02 0.00 40.20 1.75
2982 3722 2.305635 TGACATGGCACTGTCCAGTTAT 59.694 45.455 20.01 0.00 43.99 1.89
2984 3724 0.473755 TGACATGGCACTGTCCAGTT 59.526 50.000 20.01 0.00 43.99 3.16
2990 3730 0.767375 AGAAGGTGACATGGCACTGT 59.233 50.000 30.13 18.53 38.78 3.55
3008 3748 1.200760 TCCCACATGTGAGGGGTCAG 61.201 60.000 27.46 7.42 44.78 3.51
3011 3751 2.231380 GGTCCCACATGTGAGGGGT 61.231 63.158 27.46 0.00 44.78 4.95
3012 3752 2.677228 GGTCCCACATGTGAGGGG 59.323 66.667 27.46 19.56 44.78 4.79
3060 3803 9.020731 GGGTATTCCAAAAGAAAGATAGAACAA 57.979 33.333 0.00 0.00 38.21 2.83
3062 3805 7.834681 AGGGGTATTCCAAAAGAAAGATAGAAC 59.165 37.037 0.00 0.00 38.21 3.01
3069 3812 7.283354 GTCATCTAGGGGTATTCCAAAAGAAAG 59.717 40.741 0.00 0.00 38.21 2.62
3075 3818 3.389983 CGGTCATCTAGGGGTATTCCAAA 59.610 47.826 0.00 0.00 37.22 3.28
3097 3840 1.237285 AATCTCACGTTGGTGCAGCC 61.237 55.000 14.36 5.89 44.03 4.85
3099 3842 1.728971 GAGAATCTCACGTTGGTGCAG 59.271 52.381 5.22 0.00 44.03 4.41
3115 3858 4.328536 AGAAAGAGAGCTACGTGAGAGAA 58.671 43.478 0.00 0.00 0.00 2.87
3116 3859 3.936453 GAGAAAGAGAGCTACGTGAGAGA 59.064 47.826 0.00 0.00 0.00 3.10
3117 3860 3.938963 AGAGAAAGAGAGCTACGTGAGAG 59.061 47.826 0.00 0.00 0.00 3.20
3121 3864 3.938963 AGAGAGAGAAAGAGAGCTACGTG 59.061 47.826 0.00 0.00 0.00 4.49
3125 3868 6.717289 AGTTACAGAGAGAGAAAGAGAGCTA 58.283 40.000 0.00 0.00 0.00 3.32
3140 3883 6.722301 CAATCATGCATTGGTAGTTACAGAG 58.278 40.000 0.00 0.00 38.67 3.35
3157 3900 4.271776 TCAAGATAAGCTCGTGCAATCATG 59.728 41.667 20.06 18.46 42.74 3.07
3161 3904 4.445453 TCATCAAGATAAGCTCGTGCAAT 58.555 39.130 12.58 4.68 42.74 3.56
3167 3910 4.437239 ACCAACTCATCAAGATAAGCTCG 58.563 43.478 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.