Multiple sequence alignment - TraesCS5B01G285800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G285800 chr5B 100.000 6573 0 0 1 6573 471299802 471306374 0.000000e+00 12139.0
1 TraesCS5B01G285800 chr5B 90.244 82 4 3 1879 1959 383540430 383540508 3.240000e-18 104.0
2 TraesCS5B01G285800 chr5D 95.170 3892 104 36 2005 5864 391042553 391046392 0.000000e+00 6069.0
3 TraesCS5B01G285800 chr5D 96.006 1903 60 9 1 1889 391040627 391042527 0.000000e+00 3079.0
4 TraesCS5B01G285800 chr5D 93.776 723 26 5 5851 6573 391047958 391048661 0.000000e+00 1068.0
5 TraesCS5B01G285800 chr5D 82.857 595 78 19 492 1074 521497268 521496686 4.550000e-141 512.0
6 TraesCS5B01G285800 chr5D 75.643 817 153 35 781 1572 409334409 409335204 1.350000e-96 364.0
7 TraesCS5B01G285800 chr5D 90.583 223 19 2 1347 1568 521496646 521496425 1.790000e-75 294.0
8 TraesCS5B01G285800 chr5D 82.589 224 27 6 1969 2190 521496186 521495973 3.130000e-43 187.0
9 TraesCS5B01G285800 chr5D 88.506 87 6 3 1879 1964 330704971 330704888 1.170000e-17 102.0
10 TraesCS5B01G285800 chr5D 97.436 39 1 0 1961 1999 391042524 391042562 4.250000e-07 67.6
11 TraesCS5B01G285800 chr5A 90.858 4594 248 83 1963 6505 494382690 494387162 0.000000e+00 5999.0
12 TraesCS5B01G285800 chr5A 94.410 1914 75 11 1 1886 494380779 494382688 0.000000e+00 2913.0
13 TraesCS5B01G285800 chr5A 90.885 1492 94 15 419 1886 512974143 512975616 0.000000e+00 1964.0
14 TraesCS5B01G285800 chr5A 93.931 1071 51 5 1 1060 512971819 512972886 0.000000e+00 1605.0
15 TraesCS5B01G285800 chr5A 92.441 926 45 14 1963 2879 512973213 512974122 0.000000e+00 1299.0
16 TraesCS5B01G285800 chr5A 83.298 952 120 28 150 1074 649851653 649850714 0.000000e+00 841.0
17 TraesCS5B01G285800 chr5A 86.755 453 39 5 1963 2412 512975618 512976052 9.910000e-133 484.0
18 TraesCS5B01G285800 chr5A 87.774 319 18 10 1583 1886 512972899 512973211 2.920000e-93 353.0
19 TraesCS5B01G285800 chr5A 81.193 436 59 12 3465 3894 649849959 649849541 4.910000e-86 329.0
20 TraesCS5B01G285800 chr5A 89.778 225 20 3 1345 1568 649850661 649850439 1.080000e-72 285.0
21 TraesCS5B01G285800 chr5A 93.085 188 11 1 4952 5137 380960243 380960430 2.340000e-69 274.0
22 TraesCS5B01G285800 chr1D 94.681 188 8 1 4952 5137 24597713 24597900 2.320000e-74 291.0
23 TraesCS5B01G285800 chr3B 94.149 188 9 1 4952 5137 807979568 807979381 1.080000e-72 285.0
24 TraesCS5B01G285800 chr7B 93.085 188 11 1 4952 5137 614501080 614501267 2.340000e-69 274.0
25 TraesCS5B01G285800 chr7B 93.085 188 11 1 4952 5137 614555565 614555752 2.340000e-69 274.0
26 TraesCS5B01G285800 chr6D 93.085 188 11 1 4952 5137 467430051 467429864 2.340000e-69 274.0
27 TraesCS5B01G285800 chr6D 86.585 82 9 2 1886 1967 412427339 412427260 9.080000e-14 89.8
28 TraesCS5B01G285800 chr2B 93.085 188 11 1 4952 5137 16670964 16671151 2.340000e-69 274.0
29 TraesCS5B01G285800 chr3D 94.872 78 4 0 1886 1963 458620847 458620770 8.950000e-24 122.0
30 TraesCS5B01G285800 chr3D 88.608 79 4 3 1886 1962 545068016 545067941 2.520000e-14 91.6
31 TraesCS5B01G285800 chr1B 90.244 82 4 3 1886 1967 634499560 634499483 3.240000e-18 104.0
32 TraesCS5B01G285800 chr1B 90.123 81 4 3 1883 1962 634499483 634499560 1.170000e-17 102.0
33 TraesCS5B01G285800 chr1A 86.585 82 10 1 1886 1966 526646880 526646961 9.080000e-14 89.8
34 TraesCS5B01G285800 chr4D 85.714 84 8 3 1886 1966 85535544 85535462 1.170000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G285800 chr5B 471299802 471306374 6572 False 12139.0 12139 100.000000 1 6573 1 chr5B.!!$F2 6572
1 TraesCS5B01G285800 chr5D 391040627 391048661 8034 False 2570.9 6069 95.597000 1 6573 4 chr5D.!!$F2 6572
2 TraesCS5B01G285800 chr5D 409334409 409335204 795 False 364.0 364 75.643000 781 1572 1 chr5D.!!$F1 791
3 TraesCS5B01G285800 chr5D 521495973 521497268 1295 True 331.0 512 85.343000 492 2190 3 chr5D.!!$R2 1698
4 TraesCS5B01G285800 chr5A 494380779 494387162 6383 False 4456.0 5999 92.634000 1 6505 2 chr5A.!!$F2 6504
5 TraesCS5B01G285800 chr5A 512971819 512976052 4233 False 1141.0 1964 90.357200 1 2879 5 chr5A.!!$F3 2878
6 TraesCS5B01G285800 chr5A 649849541 649851653 2112 True 485.0 841 84.756333 150 3894 3 chr5A.!!$R1 3744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 3.565307 TCTCTTGCAATGTTTGGGAACT 58.435 40.909 0.00 0.00 36.70 3.01 F
1250 3221 1.616628 TGAGAAGGAGGAAGGCCCC 60.617 63.158 0.00 0.00 34.66 5.80 F
1952 3940 0.377203 GAGCCGCTTATTTTGGGACG 59.623 55.000 0.00 0.00 0.00 4.79 F
1955 3943 1.014352 CCGCTTATTTTGGGACGGAG 58.986 55.000 0.00 0.00 43.19 4.63 F
1958 3946 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20 F
3415 5418 2.158957 AGTGTTAGTCCACCAGTGTGTG 60.159 50.000 5.13 5.13 41.09 3.82 F
4786 6805 1.202222 CGATTCCAAGCTTCATGCACC 60.202 52.381 0.00 0.00 45.94 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 3932 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.0 0.0 0.00 3.28 R
2192 4185 1.090728 TCGCTGAACACAAACAAGCA 58.909 45.000 0.0 0.0 0.00 3.91 R
3453 5456 2.091541 GCACTTGTTAATAGCAGCCCA 58.908 47.619 0.0 0.0 0.00 5.36 R
3470 5473 3.001533 CCTGCAAAACATTCAACAAGCAC 59.998 43.478 0.0 0.0 0.00 4.40 R
3911 5921 3.703052 GAGAAATTCCCATGCATTGACCT 59.297 43.478 0.0 0.0 0.00 3.85 R
4909 6928 0.255890 ACTGTTGCCACTCACCAGTT 59.744 50.000 0.0 0.0 44.67 3.16 R
5663 7703 1.261619 CAAGCACCTGAACGAACTGAC 59.738 52.381 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.945134 AGTAAGATTTTCTGCTGTTCAAATGT 58.055 30.769 0.00 0.00 0.00 2.71
96 97 4.586841 TGGGGTTTTACTGTTTGATCCAAG 59.413 41.667 0.00 0.00 0.00 3.61
249 250 3.565307 TCTCTTGCAATGTTTGGGAACT 58.435 40.909 0.00 0.00 36.70 3.01
361 367 4.761739 TCATCAGGTTTTGGTAGCTTTCAG 59.238 41.667 0.00 0.00 0.00 3.02
428 442 8.609176 TGTCTTGTTTACATTTCTCTTGTACAC 58.391 33.333 0.00 0.00 33.11 2.90
539 559 6.016610 GGCTAACTGTTCTTGGTGTTTAATCA 60.017 38.462 0.00 0.00 0.00 2.57
544 564 8.237811 ACTGTTCTTGGTGTTTAATCAAAGAT 57.762 30.769 2.86 0.00 0.00 2.40
625 660 6.852858 TGTGTTTTCTCGTGAATTATGTGA 57.147 33.333 0.02 0.00 31.56 3.58
1250 3221 1.616628 TGAGAAGGAGGAAGGCCCC 60.617 63.158 0.00 0.00 34.66 5.80
1369 3340 7.136772 CCTACATTTGCTTATCATGTGTCATG 58.863 38.462 3.65 3.65 33.19 3.07
1497 3468 1.938926 GCAGCAGAAGTCACTCCTGAC 60.939 57.143 0.00 0.00 46.50 3.51
1590 3561 7.387948 GTGCTCCTAAGAGTTAATTTGTGAAGA 59.612 37.037 0.00 0.00 42.59 2.87
1651 3622 3.801698 ACTGCATGCAGACTGGTATAAG 58.198 45.455 45.50 21.70 46.30 1.73
1828 3816 8.821894 CAAAATTCTAGTACTGAAGGTATGAGC 58.178 37.037 5.39 0.00 32.56 4.26
1886 3874 5.559770 TCCTGCAGATCAGTTTGTGAATTA 58.440 37.500 17.39 0.00 41.25 1.40
1887 3875 5.412594 TCCTGCAGATCAGTTTGTGAATTAC 59.587 40.000 17.39 0.00 41.25 1.89
1888 3876 5.413833 CCTGCAGATCAGTTTGTGAATTACT 59.586 40.000 17.39 0.00 41.25 2.24
1889 3877 6.402983 CCTGCAGATCAGTTTGTGAATTACTC 60.403 42.308 17.39 0.00 41.25 2.59
1890 3878 5.412594 TGCAGATCAGTTTGTGAATTACTCC 59.587 40.000 0.00 0.00 39.19 3.85
1891 3879 5.163713 GCAGATCAGTTTGTGAATTACTCCC 60.164 44.000 0.00 0.00 39.19 4.30
1892 3880 6.176183 CAGATCAGTTTGTGAATTACTCCCT 58.824 40.000 0.00 0.00 39.19 4.20
1893 3881 6.314896 CAGATCAGTTTGTGAATTACTCCCTC 59.685 42.308 0.00 0.00 39.19 4.30
1894 3882 4.906618 TCAGTTTGTGAATTACTCCCTCC 58.093 43.478 0.00 0.00 29.64 4.30
1895 3883 4.349636 TCAGTTTGTGAATTACTCCCTCCA 59.650 41.667 0.00 0.00 29.64 3.86
1896 3884 5.014123 TCAGTTTGTGAATTACTCCCTCCAT 59.986 40.000 0.00 0.00 29.64 3.41
1897 3885 5.355350 CAGTTTGTGAATTACTCCCTCCATC 59.645 44.000 0.00 0.00 0.00 3.51
1898 3886 4.503714 TTGTGAATTACTCCCTCCATCC 57.496 45.455 0.00 0.00 0.00 3.51
1899 3887 2.777692 TGTGAATTACTCCCTCCATCCC 59.222 50.000 0.00 0.00 0.00 3.85
1900 3888 2.777692 GTGAATTACTCCCTCCATCCCA 59.222 50.000 0.00 0.00 0.00 4.37
1901 3889 3.202151 GTGAATTACTCCCTCCATCCCAA 59.798 47.826 0.00 0.00 0.00 4.12
1902 3890 3.855599 TGAATTACTCCCTCCATCCCAAA 59.144 43.478 0.00 0.00 0.00 3.28
1903 3891 4.293634 TGAATTACTCCCTCCATCCCAAAA 59.706 41.667 0.00 0.00 0.00 2.44
1904 3892 5.043432 TGAATTACTCCCTCCATCCCAAAAT 60.043 40.000 0.00 0.00 0.00 1.82
1905 3893 6.161348 TGAATTACTCCCTCCATCCCAAAATA 59.839 38.462 0.00 0.00 0.00 1.40
1906 3894 6.606241 ATTACTCCCTCCATCCCAAAATAA 57.394 37.500 0.00 0.00 0.00 1.40
1907 3895 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
1908 3896 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
1909 3897 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
1910 3898 3.855599 TCCCTCCATCCCAAAATAAGTGA 59.144 43.478 0.00 0.00 0.00 3.41
1911 3899 3.954258 CCCTCCATCCCAAAATAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
1912 3900 4.325344 CCCTCCATCCCAAAATAAGTGACT 60.325 45.833 0.00 0.00 0.00 3.41
1913 3901 4.884164 CCTCCATCCCAAAATAAGTGACTC 59.116 45.833 0.00 0.00 0.00 3.36
1914 3902 5.500234 CTCCATCCCAAAATAAGTGACTCA 58.500 41.667 0.00 0.00 0.00 3.41
1915 3903 5.886609 TCCATCCCAAAATAAGTGACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
1916 3904 5.710099 TCCATCCCAAAATAAGTGACTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
1917 3905 5.711976 CCATCCCAAAATAAGTGACTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
1918 3906 6.209391 CCATCCCAAAATAAGTGACTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
1919 3907 7.393234 CCATCCCAAAATAAGTGACTCAACTTA 59.607 37.037 0.00 0.00 44.52 2.24
1920 3908 7.979444 TCCCAAAATAAGTGACTCAACTTAG 57.021 36.000 3.49 0.00 43.86 2.18
1921 3909 7.514721 TCCCAAAATAAGTGACTCAACTTAGT 58.485 34.615 3.49 0.00 43.86 2.24
1922 3910 8.653191 TCCCAAAATAAGTGACTCAACTTAGTA 58.347 33.333 3.49 0.00 43.86 1.82
1923 3911 8.936864 CCCAAAATAAGTGACTCAACTTAGTAG 58.063 37.037 3.49 0.00 43.86 2.57
1924 3912 9.490379 CCAAAATAAGTGACTCAACTTAGTAGT 57.510 33.333 3.49 0.00 43.86 2.73
1931 3919 8.235359 AGTGACTCAACTTAGTAGTACAAAGT 57.765 34.615 2.52 0.00 35.01 2.66
1932 3920 8.693625 AGTGACTCAACTTAGTAGTACAAAGTT 58.306 33.333 2.52 3.01 42.60 2.66
1938 3926 5.467705 ACTTAGTAGTACAAAGTTGAGCCG 58.532 41.667 2.52 0.00 31.21 5.52
1939 3927 2.685100 AGTAGTACAAAGTTGAGCCGC 58.315 47.619 2.52 0.00 0.00 6.53
1940 3928 2.299297 AGTAGTACAAAGTTGAGCCGCT 59.701 45.455 2.52 0.00 0.00 5.52
1941 3929 2.256117 AGTACAAAGTTGAGCCGCTT 57.744 45.000 0.00 0.00 0.00 4.68
1942 3930 3.396260 AGTACAAAGTTGAGCCGCTTA 57.604 42.857 0.00 0.00 0.00 3.09
1943 3931 3.939066 AGTACAAAGTTGAGCCGCTTAT 58.061 40.909 0.00 0.00 0.00 1.73
1944 3932 4.324267 AGTACAAAGTTGAGCCGCTTATT 58.676 39.130 0.00 0.00 0.00 1.40
1945 3933 4.760204 AGTACAAAGTTGAGCCGCTTATTT 59.240 37.500 0.00 0.00 0.00 1.40
1946 3934 4.584327 ACAAAGTTGAGCCGCTTATTTT 57.416 36.364 0.00 0.00 0.00 1.82
1947 3935 4.298332 ACAAAGTTGAGCCGCTTATTTTG 58.702 39.130 16.20 16.20 0.00 2.44
1948 3936 3.575965 AAGTTGAGCCGCTTATTTTGG 57.424 42.857 0.00 0.00 0.00 3.28
1949 3937 1.818674 AGTTGAGCCGCTTATTTTGGG 59.181 47.619 0.00 0.00 0.00 4.12
1950 3938 1.816224 GTTGAGCCGCTTATTTTGGGA 59.184 47.619 0.00 0.00 0.00 4.37
1951 3939 1.459450 TGAGCCGCTTATTTTGGGAC 58.541 50.000 0.00 0.00 0.00 4.46
1952 3940 0.377203 GAGCCGCTTATTTTGGGACG 59.623 55.000 0.00 0.00 0.00 4.79
1953 3941 1.029947 AGCCGCTTATTTTGGGACGG 61.030 55.000 0.00 0.00 43.37 4.79
1954 3942 1.027792 GCCGCTTATTTTGGGACGGA 61.028 55.000 3.02 0.00 43.19 4.69
1955 3943 1.014352 CCGCTTATTTTGGGACGGAG 58.986 55.000 0.00 0.00 43.19 4.63
1956 3944 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
1957 3945 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
1958 3946 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
1959 3947 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
2192 4185 4.217118 GGATTGTGCTGTTCTGATTCTGTT 59.783 41.667 0.00 0.00 0.00 3.16
2444 4437 2.957402 AGGGTTGTGCTGAGAATGAA 57.043 45.000 0.00 0.00 0.00 2.57
2528 4521 5.455392 CATCTTGTGTTAGCTTTGAAGGTG 58.545 41.667 5.75 0.00 37.33 4.00
2529 4522 4.523083 TCTTGTGTTAGCTTTGAAGGTGT 58.477 39.130 5.75 0.00 37.33 4.16
2700 4693 5.360999 TCGTGAGTCAGACCAAGATAATGAT 59.639 40.000 0.00 0.00 0.00 2.45
2822 4816 5.299949 ACCTCCTTTTTGCATGAAAATGTC 58.700 37.500 0.00 0.00 33.46 3.06
2823 4817 5.070847 ACCTCCTTTTTGCATGAAAATGTCT 59.929 36.000 0.00 0.00 33.46 3.41
2828 4822 6.146021 CCTTTTTGCATGAAAATGTCTGTACC 59.854 38.462 0.00 0.00 33.46 3.34
2841 4835 8.791355 AAATGTCTGTACCGTATTTTGTTTTC 57.209 30.769 0.00 0.00 0.00 2.29
3023 5025 4.021719 ACAGATGGAAATTGCAAAGGTCAG 60.022 41.667 1.71 0.00 0.00 3.51
3086 5088 6.674694 AGCTTTATTTGCTCTCACATACAG 57.325 37.500 0.00 0.00 35.67 2.74
3087 5089 6.176183 AGCTTTATTTGCTCTCACATACAGT 58.824 36.000 0.00 0.00 35.67 3.55
3088 5090 7.331026 AGCTTTATTTGCTCTCACATACAGTA 58.669 34.615 0.00 0.00 35.67 2.74
3393 5396 6.712095 TGTGAGCAAGTGACAGATTTCTTTAT 59.288 34.615 0.00 0.00 0.00 1.40
3413 5416 2.910688 AGTGTTAGTCCACCAGTGTG 57.089 50.000 0.00 0.00 42.39 3.82
3415 5418 2.158957 AGTGTTAGTCCACCAGTGTGTG 60.159 50.000 5.13 5.13 41.09 3.82
3453 5456 7.284489 TGCCTTGATACACTTTACAAGTTTTCT 59.716 33.333 0.00 0.00 40.46 2.52
3456 5459 7.504924 TGATACACTTTACAAGTTTTCTGGG 57.495 36.000 0.00 0.00 40.46 4.45
3463 5466 3.160679 ACAAGTTTTCTGGGCTGCTAT 57.839 42.857 0.00 0.00 0.00 2.97
3470 5473 5.183904 AGTTTTCTGGGCTGCTATTAACAAG 59.816 40.000 0.00 0.00 0.00 3.16
3693 5701 5.240623 TGGTTATGCTGTTAACAAGGTCAAG 59.759 40.000 10.03 0.00 34.42 3.02
3753 5763 8.328758 TGTTCTTCACTAACATGATTATTCCCT 58.671 33.333 0.00 0.00 32.07 4.20
3822 5832 2.230992 GAGGTTGCCATGCACAATGTTA 59.769 45.455 0.00 0.00 38.71 2.41
3851 5861 4.099380 TGAAGGAACCAAAAACAACGAC 57.901 40.909 0.00 0.00 0.00 4.34
3852 5862 3.506455 TGAAGGAACCAAAAACAACGACA 59.494 39.130 0.00 0.00 0.00 4.35
3858 5868 4.027572 ACCAAAAACAACGACACAGATG 57.972 40.909 0.00 0.00 0.00 2.90
3911 5921 5.184864 CCCTTGATGGTTATGCTGTTAACAA 59.815 40.000 10.03 0.00 34.42 2.83
3993 6003 5.449588 GCACTTCCAATGGATTATGTGACTG 60.450 44.000 20.74 1.62 0.00 3.51
4217 6227 4.728772 TCTTCTGGATGGTTCACATGTTT 58.271 39.130 0.00 0.00 40.72 2.83
4286 6303 9.688592 GCCATTAATCTCATTTTCATTTCCTAG 57.311 33.333 0.00 0.00 0.00 3.02
4581 6600 7.650903 CAGACATGTATCTTCTGAATTCGATCA 59.349 37.037 0.00 0.00 39.36 2.92
4582 6601 7.866898 AGACATGTATCTTCTGAATTCGATCAG 59.133 37.037 9.35 9.35 46.62 2.90
4586 6605 7.547227 TGTATCTTCTGAATTCGATCAGTTGA 58.453 34.615 14.15 13.14 45.65 3.18
4607 6626 8.481314 AGTTGATCATGTCAGTACACATTATCT 58.519 33.333 15.83 1.33 37.89 1.98
4780 6799 2.027285 TGACCATCGATTCCAAGCTTCA 60.027 45.455 0.00 0.00 0.00 3.02
4786 6805 1.202222 CGATTCCAAGCTTCATGCACC 60.202 52.381 0.00 0.00 45.94 5.01
4864 6883 6.016860 TCTGTTATATCATGCAGGCAATTGAC 60.017 38.462 10.34 6.35 0.00 3.18
4909 6928 3.490348 TGACCGCAGAGATCATCAGATA 58.510 45.455 0.00 0.00 33.72 1.98
4910 6929 3.891366 TGACCGCAGAGATCATCAGATAA 59.109 43.478 0.00 0.00 33.72 1.75
5211 7234 5.429957 AGAATTTTGCAGTGTTGAGACTC 57.570 39.130 0.00 0.00 0.00 3.36
5212 7235 5.128919 AGAATTTTGCAGTGTTGAGACTCT 58.871 37.500 3.68 0.00 0.00 3.24
5216 7239 2.034878 TGCAGTGTTGAGACTCTGAGT 58.965 47.619 10.66 10.66 45.65 3.41
5272 7295 3.684788 ACGTGATAAACTGTGATGCCTTC 59.315 43.478 0.00 0.00 0.00 3.46
5492 7516 4.488126 TCAGTTGCATCAGTTTAACAGC 57.512 40.909 0.00 0.00 0.00 4.40
5512 7551 1.468520 CAACCATAAGCTTGACCACCG 59.531 52.381 9.86 0.00 0.00 4.94
5578 7618 1.546476 CGCCAGAAGTCCTAGTTCAGT 59.454 52.381 0.00 0.00 30.04 3.41
5581 7621 3.866449 GCCAGAAGTCCTAGTTCAGTTGG 60.866 52.174 0.00 0.00 30.04 3.77
5663 7703 3.568853 CAGATACCCCCTAGTTCAGTACG 59.431 52.174 0.00 0.00 0.00 3.67
5714 7758 2.370647 GATAGCGACAGAGCACCCCC 62.371 65.000 0.00 0.00 40.15 5.40
5744 7788 1.614413 GTAGATCCTTGTCCCTAGCCG 59.386 57.143 0.00 0.00 0.00 5.52
5834 7885 5.116882 GTTTGTTTCACTGGAGACTGTACT 58.883 41.667 0.00 0.00 40.96 2.73
5836 7887 3.704566 TGTTTCACTGGAGACTGTACTGT 59.295 43.478 4.92 4.92 40.96 3.55
5868 9500 5.697473 TTTGCCTGAATGATGAAACGTAA 57.303 34.783 0.00 0.00 0.00 3.18
5951 9592 0.666274 TTTGTACTGAGCAGCGACGG 60.666 55.000 0.00 0.00 0.00 4.79
6000 9641 1.276421 CTTGGGTGCTGTAGCTGTAGT 59.724 52.381 5.38 0.00 42.66 2.73
6016 9657 4.500887 GCTGTAGTTACTGTTCTGTGGTCA 60.501 45.833 0.00 0.00 0.00 4.02
6248 9912 3.077359 ACTGTAGCAGTTCATTCCTTGC 58.923 45.455 0.00 0.00 42.59 4.01
6292 9956 2.987547 GTGGTCACGTCTCCCGGA 60.988 66.667 0.73 0.00 42.24 5.14
6331 9995 1.102978 CCTCCGGCCGATGAAATTTT 58.897 50.000 30.73 0.00 0.00 1.82
6340 10004 3.609409 GCCGATGAAATTTTATCCGGAGC 60.609 47.826 24.43 15.99 0.00 4.70
6345 10012 3.372822 TGAAATTTTATCCGGAGCACGTC 59.627 43.478 11.34 1.86 42.24 4.34
6417 10084 1.366030 GTGTTTGTGCGACACGACG 60.366 57.895 0.00 0.00 38.15 5.12
6480 10147 3.245284 GCTTCGCATCGTTAGCTTGATAA 59.755 43.478 0.00 0.00 34.71 1.75
6482 10149 4.772046 TCGCATCGTTAGCTTGATAAAC 57.228 40.909 0.00 0.00 0.00 2.01
6483 10150 3.242016 TCGCATCGTTAGCTTGATAAACG 59.758 43.478 11.56 11.56 45.46 3.60
6493 10161 7.515371 CGTTAGCTTGATAAACGAAAGAGATCC 60.515 40.741 12.27 0.00 46.66 3.36
6505 10173 6.574350 ACGAAAGAGATCCATAACGAAATCT 58.426 36.000 0.00 0.00 0.00 2.40
6507 10175 8.195436 ACGAAAGAGATCCATAACGAAATCTAA 58.805 33.333 0.00 0.00 0.00 2.10
6508 10176 8.695284 CGAAAGAGATCCATAACGAAATCTAAG 58.305 37.037 0.00 0.00 0.00 2.18
6509 10177 9.535878 GAAAGAGATCCATAACGAAATCTAAGT 57.464 33.333 0.00 0.00 0.00 2.24
6512 10180 9.357161 AGAGATCCATAACGAAATCTAAGTAGT 57.643 33.333 0.00 0.00 0.00 2.73
6518 10186 9.591404 CCATAACGAAATCTAAGTAGTAGTACG 57.409 37.037 2.04 0.00 33.97 3.67
6519 10187 9.100895 CATAACGAAATCTAAGTAGTAGTACGC 57.899 37.037 2.04 0.00 33.97 4.42
6520 10188 6.917217 ACGAAATCTAAGTAGTAGTACGCT 57.083 37.500 2.04 0.00 33.97 5.07
6521 10189 8.425577 AACGAAATCTAAGTAGTAGTACGCTA 57.574 34.615 2.04 0.00 33.97 4.26
6522 10190 8.425577 ACGAAATCTAAGTAGTAGTACGCTAA 57.574 34.615 2.04 0.00 33.97 3.09
6523 10191 8.883731 ACGAAATCTAAGTAGTAGTACGCTAAA 58.116 33.333 2.04 0.00 33.97 1.85
6524 10192 9.708222 CGAAATCTAAGTAGTAGTACGCTAAAA 57.292 33.333 2.04 0.00 33.97 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.941555 ATCTTACTCCTAGAACAACAGGG 57.058 43.478 0.00 0.00 32.40 4.45
42 43 2.895404 ACGCTTAGTACTCCACTGGAAA 59.105 45.455 0.00 0.00 38.24 3.13
96 97 0.878416 TGGCCAAAAGTATGTCACGC 59.122 50.000 0.61 0.00 0.00 5.34
249 250 6.304624 TGAGGAGACTACAGTTTGAGAGTTA 58.695 40.000 0.00 0.00 44.43 2.24
361 367 2.098443 TGAACGACCCAGCTTTTCAAAC 59.902 45.455 0.00 0.00 0.00 2.93
428 442 3.584586 TTGCAATTCAGGGCAAACG 57.415 47.368 0.00 0.00 46.11 3.60
513 531 3.577805 AACACCAAGAACAGTTAGCCT 57.422 42.857 0.00 0.00 0.00 4.58
1144 3112 7.990886 TCGGAAAGTTAACCAGATAAGCATATT 59.009 33.333 0.88 0.00 0.00 1.28
1147 3117 5.741011 TCGGAAAGTTAACCAGATAAGCAT 58.259 37.500 0.88 0.00 0.00 3.79
1250 3221 5.121105 TCACAGGCATACTCTTCAATCATG 58.879 41.667 0.00 0.00 0.00 3.07
1369 3340 7.670009 AGCTAAATGAGACTGCATGATAATC 57.330 36.000 0.00 0.00 0.00 1.75
1497 3468 2.158856 TGCAAGATAGCACCTCATCTGG 60.159 50.000 0.00 0.00 40.11 3.86
1590 3561 7.205297 ACGACTACAGTACACATAAAAACACT 58.795 34.615 0.00 0.00 0.00 3.55
1651 3622 7.283127 TCACTTTATGAGGCCATATCTTTGAAC 59.717 37.037 5.01 0.00 35.38 3.18
1828 3816 4.073293 ACCACACTGAAACCTCAACTAG 57.927 45.455 0.00 0.00 0.00 2.57
1886 3874 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
1887 3875 4.079787 TCACTTATTTTGGGATGGAGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
1888 3876 3.855599 TCACTTATTTTGGGATGGAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
1889 3877 3.954258 GTCACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
1890 3878 4.860022 AGTCACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
1891 3879 5.500234 TGAGTCACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
1892 3880 5.512942 TGAGTCACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
1893 3881 5.711976 AGTTGAGTCACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
1894 3882 6.824305 AGTTGAGTCACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
1895 3883 8.164070 ACTAAGTTGAGTCACTTATTTTGGGAT 58.836 33.333 12.57 0.00 38.34 3.85
1896 3884 7.514721 ACTAAGTTGAGTCACTTATTTTGGGA 58.485 34.615 12.57 0.00 38.34 4.37
1897 3885 7.745620 ACTAAGTTGAGTCACTTATTTTGGG 57.254 36.000 12.57 6.00 38.34 4.12
1898 3886 9.490379 ACTACTAAGTTGAGTCACTTATTTTGG 57.510 33.333 12.57 6.47 38.34 3.28
1905 3893 8.693625 ACTTTGTACTACTAAGTTGAGTCACTT 58.306 33.333 9.46 11.17 40.30 3.16
1906 3894 8.235359 ACTTTGTACTACTAAGTTGAGTCACT 57.765 34.615 9.46 0.00 40.30 3.41
1907 3895 8.868635 AACTTTGTACTACTAAGTTGAGTCAC 57.131 34.615 20.95 0.00 46.67 3.67
1915 3903 5.467705 CGGCTCAACTTTGTACTACTAAGT 58.532 41.667 9.46 9.46 43.89 2.24
1916 3904 4.326548 GCGGCTCAACTTTGTACTACTAAG 59.673 45.833 8.37 8.37 37.07 2.18
1917 3905 4.021719 AGCGGCTCAACTTTGTACTACTAA 60.022 41.667 0.00 0.00 0.00 2.24
1918 3906 3.508793 AGCGGCTCAACTTTGTACTACTA 59.491 43.478 0.00 0.00 0.00 1.82
1919 3907 2.299297 AGCGGCTCAACTTTGTACTACT 59.701 45.455 0.00 0.00 0.00 2.57
1920 3908 2.685100 AGCGGCTCAACTTTGTACTAC 58.315 47.619 0.00 0.00 0.00 2.73
1921 3909 3.396260 AAGCGGCTCAACTTTGTACTA 57.604 42.857 1.45 0.00 0.00 1.82
1922 3910 2.256117 AAGCGGCTCAACTTTGTACT 57.744 45.000 1.45 0.00 0.00 2.73
1923 3911 4.680171 AATAAGCGGCTCAACTTTGTAC 57.320 40.909 1.45 0.00 0.00 2.90
1924 3912 5.457140 CAAAATAAGCGGCTCAACTTTGTA 58.543 37.500 1.45 0.00 0.00 2.41
1925 3913 4.298332 CAAAATAAGCGGCTCAACTTTGT 58.702 39.130 1.45 0.00 0.00 2.83
1926 3914 3.674753 CCAAAATAAGCGGCTCAACTTTG 59.325 43.478 1.45 10.70 0.00 2.77
1927 3915 3.306019 CCCAAAATAAGCGGCTCAACTTT 60.306 43.478 1.45 0.00 0.00 2.66
1928 3916 2.231235 CCCAAAATAAGCGGCTCAACTT 59.769 45.455 1.45 0.00 0.00 2.66
1929 3917 1.818674 CCCAAAATAAGCGGCTCAACT 59.181 47.619 1.45 0.00 0.00 3.16
1930 3918 1.816224 TCCCAAAATAAGCGGCTCAAC 59.184 47.619 1.45 0.00 0.00 3.18
1931 3919 1.816224 GTCCCAAAATAAGCGGCTCAA 59.184 47.619 1.45 0.00 0.00 3.02
1932 3920 1.459450 GTCCCAAAATAAGCGGCTCA 58.541 50.000 1.45 0.00 0.00 4.26
1933 3921 0.377203 CGTCCCAAAATAAGCGGCTC 59.623 55.000 1.45 0.00 0.00 4.70
1934 3922 1.029947 CCGTCCCAAAATAAGCGGCT 61.030 55.000 0.00 0.00 32.73 5.52
1935 3923 1.027792 TCCGTCCCAAAATAAGCGGC 61.028 55.000 0.00 0.00 39.11 6.53
1936 3924 1.014352 CTCCGTCCCAAAATAAGCGG 58.986 55.000 0.00 0.00 40.43 5.52
1937 3925 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
1938 3926 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
1939 3927 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1940 3928 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1941 3929 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1942 3930 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1943 3931 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1944 3932 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1945 3933 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1946 3934 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1947 3935 2.237643 GAATAGTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
1948 3936 2.941480 TGAATAGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
1949 3937 4.262079 CCAATGAATAGTACTCCCTCCGTC 60.262 50.000 0.00 0.00 0.00 4.79
1950 3938 3.641906 CCAATGAATAGTACTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
1951 3939 3.006967 CCCAATGAATAGTACTCCCTCCG 59.993 52.174 0.00 0.00 0.00 4.63
1952 3940 3.974642 ACCCAATGAATAGTACTCCCTCC 59.025 47.826 0.00 0.00 0.00 4.30
1953 3941 5.130477 TGAACCCAATGAATAGTACTCCCTC 59.870 44.000 0.00 0.00 0.00 4.30
1954 3942 5.036916 TGAACCCAATGAATAGTACTCCCT 58.963 41.667 0.00 0.00 0.00 4.20
1955 3943 5.367945 TGAACCCAATGAATAGTACTCCC 57.632 43.478 0.00 0.00 0.00 4.30
1956 3944 8.157476 ACATATGAACCCAATGAATAGTACTCC 58.843 37.037 10.38 0.00 0.00 3.85
1957 3945 8.993121 CACATATGAACCCAATGAATAGTACTC 58.007 37.037 10.38 0.00 0.00 2.59
1958 3946 7.445402 GCACATATGAACCCAATGAATAGTACT 59.555 37.037 10.38 0.00 0.00 2.73
1959 3947 7.228507 TGCACATATGAACCCAATGAATAGTAC 59.771 37.037 10.38 0.00 0.00 2.73
2192 4185 1.090728 TCGCTGAACACAAACAAGCA 58.909 45.000 0.00 0.00 0.00 3.91
2444 4437 6.485648 GGTTCTTGTTCCATATATTTACGGCT 59.514 38.462 0.00 0.00 0.00 5.52
2528 4521 5.294552 GGACAGATGCTGTAATTTCCACTAC 59.705 44.000 0.00 0.00 45.44 2.73
2529 4522 5.045942 TGGACAGATGCTGTAATTTCCACTA 60.046 40.000 0.00 0.00 45.44 2.74
2822 4816 9.078753 ACAAAAAGAAAACAAAATACGGTACAG 57.921 29.630 0.00 0.00 0.00 2.74
2823 4817 8.983307 ACAAAAAGAAAACAAAATACGGTACA 57.017 26.923 0.00 0.00 0.00 2.90
3023 5025 4.202223 TGACCTTCTGAGTTTGTACCACTC 60.202 45.833 13.16 13.16 41.08 3.51
3088 5090 9.542462 ACGTCTGCATGTAAAAACTACATATAT 57.458 29.630 0.00 0.00 36.49 0.86
3097 5099 3.250040 AGACCACGTCTGCATGTAAAAAC 59.750 43.478 0.00 0.00 41.76 2.43
3413 5416 3.146066 TCAAGGCATGGTCTGTTTACAC 58.854 45.455 0.00 0.00 0.00 2.90
3415 5418 4.941263 TGTATCAAGGCATGGTCTGTTTAC 59.059 41.667 0.00 0.00 0.00 2.01
3453 5456 2.091541 GCACTTGTTAATAGCAGCCCA 58.908 47.619 0.00 0.00 0.00 5.36
3470 5473 3.001533 CCTGCAAAACATTCAACAAGCAC 59.998 43.478 0.00 0.00 0.00 4.40
3609 5612 8.109634 AGTAGCCTCTCCAAAATATCTGAAAAA 58.890 33.333 0.00 0.00 0.00 1.94
3753 5763 6.381498 TTTGGGATCAGTAACCTGTAATCA 57.619 37.500 0.00 0.00 39.82 2.57
3822 5832 4.513406 TTTTGGTTCCTTCAGTAGGTGT 57.487 40.909 0.00 0.00 45.03 4.16
3851 5861 5.181009 ACCTTCATGTACATCACATCTGTG 58.819 41.667 5.07 3.90 44.99 3.66
3852 5862 5.426689 ACCTTCATGTACATCACATCTGT 57.573 39.130 5.07 0.00 44.99 3.41
3858 5868 4.110482 GACGGTACCTTCATGTACATCAC 58.890 47.826 13.33 0.00 42.31 3.06
3911 5921 3.703052 GAGAAATTCCCATGCATTGACCT 59.297 43.478 0.00 0.00 0.00 3.85
3993 6003 2.284190 CTTGCCCTGAAGCTTAGCTAC 58.716 52.381 7.32 0.00 38.25 3.58
4036 6046 1.806542 CCATCAACTTTCGGACTGTGG 59.193 52.381 0.00 0.00 0.00 4.17
4221 6231 2.203422 CTGGACAACCCCCGCAAA 60.203 61.111 0.00 0.00 34.81 3.68
4224 6234 4.966787 TTGCTGGACAACCCCCGC 62.967 66.667 0.00 0.00 31.73 6.13
4225 6235 2.672996 CTTGCTGGACAACCCCCG 60.673 66.667 0.00 0.00 33.68 5.73
4226 6236 1.903404 CACTTGCTGGACAACCCCC 60.903 63.158 0.00 0.00 33.68 5.40
4227 6237 1.903404 CCACTTGCTGGACAACCCC 60.903 63.158 0.00 0.00 43.95 4.95
4228 6238 1.152756 ACCACTTGCTGGACAACCC 60.153 57.895 0.00 0.00 43.95 4.11
4229 6239 0.465460 TCACCACTTGCTGGACAACC 60.465 55.000 0.00 0.00 43.95 3.77
4246 6262 7.833682 TGAGATTAATGGCTGGTTTATTCTTCA 59.166 33.333 0.00 0.00 0.00 3.02
4286 6303 3.750130 TGAGTCTCAGCAGCAAATCTTTC 59.250 43.478 0.00 0.00 0.00 2.62
4557 6576 7.651304 ACTGATCGAATTCAGAAGATACATGTC 59.349 37.037 20.18 0.00 44.88 3.06
4559 6578 7.943413 ACTGATCGAATTCAGAAGATACATG 57.057 36.000 20.18 0.00 44.88 3.21
4581 6600 8.481314 AGATAATGTGTACTGACATGATCAACT 58.519 33.333 19.02 3.66 43.08 3.16
4582 6601 8.654230 AGATAATGTGTACTGACATGATCAAC 57.346 34.615 19.02 0.00 43.08 3.18
4780 6799 5.877012 CAGAATTACTACAGAAGTGGTGCAT 59.123 40.000 0.00 0.00 39.97 3.96
4786 6805 6.646653 TGAGTTGCAGAATTACTACAGAAGTG 59.353 38.462 0.00 0.00 39.39 3.16
4864 6883 4.347453 GCAGGCCTTGCGTTGGTG 62.347 66.667 0.00 0.00 44.09 4.17
4909 6928 0.255890 ACTGTTGCCACTCACCAGTT 59.744 50.000 0.00 0.00 44.67 3.16
4910 6929 1.915228 ACTGTTGCCACTCACCAGT 59.085 52.632 0.00 0.00 42.63 4.00
4933 6952 4.141711 GGTAAGAGCCTGAACATGGATGTA 60.142 45.833 0.00 0.00 40.80 2.29
5211 7234 3.466836 TGTTGTGGTTGCTCTTACTCAG 58.533 45.455 0.00 0.00 0.00 3.35
5212 7235 3.552132 TGTTGTGGTTGCTCTTACTCA 57.448 42.857 0.00 0.00 0.00 3.41
5216 7239 6.707290 ACTACATATGTTGTGGTTGCTCTTA 58.293 36.000 19.98 0.00 46.79 2.10
5272 7295 1.805945 GACGTAGCCGACTGCAAGG 60.806 63.158 0.00 0.00 44.83 3.61
5394 7417 4.207955 AGTGAAGGAAGGTGGAACTTTTC 58.792 43.478 0.00 0.00 35.70 2.29
5512 7551 1.234821 TCACCTGCGACAAATTCACC 58.765 50.000 0.00 0.00 0.00 4.02
5663 7703 1.261619 CAAGCACCTGAACGAACTGAC 59.738 52.381 0.00 0.00 0.00 3.51
5714 7758 2.437281 ACAAGGATCTACATCTGCCTGG 59.563 50.000 0.00 0.00 0.00 4.45
5716 7760 2.703007 GGACAAGGATCTACATCTGCCT 59.297 50.000 0.00 0.00 0.00 4.75
5744 7788 6.309436 GTTTACGTTTTGCTACCAAGGATAC 58.691 40.000 0.00 0.00 31.52 2.24
5916 9557 8.251750 TCAGTACAAAAGTTCAAATAGATCCG 57.748 34.615 0.00 0.00 0.00 4.18
6000 9641 4.498513 CGTACACTGACCACAGAACAGTAA 60.499 45.833 0.00 0.00 46.03 2.24
6129 9780 3.941188 AGGTGACAGTGTGCCGGG 61.941 66.667 2.18 0.00 0.00 5.73
6292 9956 1.384989 CCCTGTACAGCGATCGACCT 61.385 60.000 21.57 4.05 0.00 3.85
6331 9995 2.125326 CCAGGACGTGCTCCGGATA 61.125 63.158 6.61 0.00 45.10 2.59
6340 10004 3.198068 CCATTAGTTGATCCAGGACGTG 58.802 50.000 0.00 0.00 0.00 4.49
6345 10012 3.474600 CAGAGCCATTAGTTGATCCAGG 58.525 50.000 0.00 0.00 0.00 4.45
6409 10076 3.104014 GGAAGAACTCCGTCGTGTC 57.896 57.895 0.00 0.00 33.37 3.67
6417 10084 2.386661 TGATTCGCTGGAAGAACTCC 57.613 50.000 0.00 0.00 45.64 3.85
6480 10147 7.042335 AGATTTCGTTATGGATCTCTTTCGTT 58.958 34.615 0.00 0.00 0.00 3.85
6482 10149 8.575565 TTAGATTTCGTTATGGATCTCTTTCG 57.424 34.615 0.00 0.00 31.71 3.46
6483 10150 9.535878 ACTTAGATTTCGTTATGGATCTCTTTC 57.464 33.333 0.00 0.00 31.71 2.62
6493 10161 9.100895 GCGTACTACTACTTAGATTTCGTTATG 57.899 37.037 0.00 0.00 0.00 1.90
6505 10173 7.802738 TCAACGTTTTAGCGTACTACTACTTA 58.197 34.615 0.00 0.00 45.00 2.24
6507 10175 6.241207 TCAACGTTTTAGCGTACTACTACT 57.759 37.500 0.00 0.00 45.00 2.57
6508 10176 5.002934 GCTCAACGTTTTAGCGTACTACTAC 59.997 44.000 14.66 0.00 45.00 2.73
6509 10177 5.088739 GCTCAACGTTTTAGCGTACTACTA 58.911 41.667 14.66 0.00 45.00 1.82
6510 10178 3.916776 GCTCAACGTTTTAGCGTACTACT 59.083 43.478 14.66 0.00 45.00 2.57
6511 10179 3.916776 AGCTCAACGTTTTAGCGTACTAC 59.083 43.478 20.81 0.69 45.00 2.73
6512 10180 3.916172 CAGCTCAACGTTTTAGCGTACTA 59.084 43.478 20.81 0.00 45.00 1.82
6513 10181 2.729882 CAGCTCAACGTTTTAGCGTACT 59.270 45.455 20.81 6.45 45.00 2.73
6514 10182 2.473984 ACAGCTCAACGTTTTAGCGTAC 59.526 45.455 20.81 2.11 45.00 3.67
6515 10183 2.727798 GACAGCTCAACGTTTTAGCGTA 59.272 45.455 20.81 0.00 45.00 4.42
6517 10185 1.792949 AGACAGCTCAACGTTTTAGCG 59.207 47.619 20.81 18.10 41.19 4.26
6518 10186 4.985044 TTAGACAGCTCAACGTTTTAGC 57.015 40.909 19.90 19.90 36.48 3.09
6519 10187 7.352719 AGATTTAGACAGCTCAACGTTTTAG 57.647 36.000 0.00 0.00 0.00 1.85
6520 10188 8.821147 TTAGATTTAGACAGCTCAACGTTTTA 57.179 30.769 0.00 0.00 0.00 1.52
6521 10189 7.724305 TTAGATTTAGACAGCTCAACGTTTT 57.276 32.000 0.00 0.00 0.00 2.43
6522 10190 7.724305 TTTAGATTTAGACAGCTCAACGTTT 57.276 32.000 0.00 0.00 0.00 3.60
6523 10191 7.724305 TTTTAGATTTAGACAGCTCAACGTT 57.276 32.000 0.00 0.00 0.00 3.99
6524 10192 7.656137 TCTTTTTAGATTTAGACAGCTCAACGT 59.344 33.333 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.