Multiple sequence alignment - TraesCS5B01G282300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G282300 chr5B 100.000 2847 0 0 1 2847 467139603 467136757 0.000000e+00 5258.0
1 TraesCS5B01G282300 chr5B 100.000 38 0 0 1 38 561695871 561695908 1.420000e-08 71.3
2 TraesCS5B01G282300 chr5B 94.595 37 2 0 39 75 561695899 561695935 1.100000e-04 58.4
3 TraesCS5B01G282300 chr5D 91.047 2234 103 38 352 2526 388795543 388793348 0.000000e+00 2928.0
4 TraesCS5B01G282300 chr5D 91.845 233 7 2 2585 2817 388791561 388791341 5.920000e-82 315.0
5 TraesCS5B01G282300 chr5A 91.067 862 33 21 925 1774 491742388 491743217 0.000000e+00 1125.0
6 TraesCS5B01G282300 chr5A 91.617 501 28 3 387 886 491741903 491742390 0.000000e+00 680.0
7 TraesCS5B01G282300 chr5A 83.617 763 64 32 1812 2524 491743225 491743976 0.000000e+00 660.0
8 TraesCS5B01G282300 chr5A 92.704 233 9 1 2585 2817 491746085 491746309 2.110000e-86 329.0
9 TraesCS5B01G282300 chr5A 94.595 74 4 0 1 74 622229628 622229555 6.450000e-22 115.0
10 TraesCS5B01G282300 chr4B 95.413 218 10 0 75 292 93770002 93770219 5.840000e-92 348.0
11 TraesCS5B01G282300 chr3A 95.413 218 10 0 75 292 118588892 118589109 5.840000e-92 348.0
12 TraesCS5B01G282300 chr7A 94.954 218 11 0 75 292 8660253 8660470 2.720000e-90 342.0
13 TraesCS5B01G282300 chr6B 94.954 218 11 0 75 292 712191382 712191165 2.720000e-90 342.0
14 TraesCS5B01G282300 chr6B 93.243 74 5 0 1 74 698050797 698050724 3.000000e-20 110.0
15 TraesCS5B01G282300 chr2A 94.954 218 11 0 75 292 43004444 43004227 2.720000e-90 342.0
16 TraesCS5B01G282300 chr2A 94.954 218 11 0 75 292 133679679 133679462 2.720000e-90 342.0
17 TraesCS5B01G282300 chr2A 93.333 225 15 0 75 299 497438991 497438767 1.630000e-87 333.0
18 TraesCS5B01G282300 chr4A 94.144 222 13 0 75 296 521958108 521958329 3.510000e-89 339.0
19 TraesCS5B01G282300 chr1B 94.907 216 11 0 75 290 371440076 371440291 3.510000e-89 339.0
20 TraesCS5B01G282300 chr2B 96.104 77 3 0 1 77 776409613 776409537 2.980000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G282300 chr5B 467136757 467139603 2846 True 5258.0 5258 100.00000 1 2847 1 chr5B.!!$R1 2846
1 TraesCS5B01G282300 chr5D 388791341 388795543 4202 True 1621.5 2928 91.44600 352 2817 2 chr5D.!!$R1 2465
2 TraesCS5B01G282300 chr5A 491741903 491746309 4406 False 698.5 1125 89.75125 387 2817 4 chr5A.!!$F1 2430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2119 0.251341 GCATCCACCTCCAACCACTT 60.251 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.138205 CTGTAGCTACAGTGGACGAAG 57.862 52.381 35.77 15.64 46.51 3.79
26 27 1.816835 TGTAGCTACAGTGGACGAAGG 59.183 52.381 22.67 0.00 0.00 3.46
27 28 1.817447 GTAGCTACAGTGGACGAAGGT 59.183 52.381 19.15 0.00 0.00 3.50
28 29 0.603569 AGCTACAGTGGACGAAGGTG 59.396 55.000 0.00 0.00 0.00 4.00
29 30 0.389948 GCTACAGTGGACGAAGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
30 31 0.389948 CTACAGTGGACGAAGGTGGC 60.390 60.000 0.00 0.00 0.00 5.01
31 32 1.823169 TACAGTGGACGAAGGTGGCC 61.823 60.000 0.00 0.00 0.00 5.36
32 33 2.526873 AGTGGACGAAGGTGGCCT 60.527 61.111 3.32 0.00 33.87 5.19
33 34 2.358737 GTGGACGAAGGTGGCCTG 60.359 66.667 3.32 0.00 32.13 4.85
34 35 3.636231 TGGACGAAGGTGGCCTGG 61.636 66.667 3.32 0.00 32.13 4.45
35 36 4.410400 GGACGAAGGTGGCCTGGG 62.410 72.222 3.32 0.00 32.13 4.45
36 37 4.410400 GACGAAGGTGGCCTGGGG 62.410 72.222 3.32 0.00 32.13 4.96
56 57 4.506255 GCCTGGGGCTTGCCGTAT 62.506 66.667 5.49 0.00 46.69 3.06
57 58 2.275418 CCTGGGGCTTGCCGTATT 59.725 61.111 5.49 0.00 0.00 1.89
58 59 1.823899 CCTGGGGCTTGCCGTATTC 60.824 63.158 5.49 0.00 0.00 1.75
59 60 1.823899 CTGGGGCTTGCCGTATTCC 60.824 63.158 5.49 1.47 0.00 3.01
60 61 2.270874 CTGGGGCTTGCCGTATTCCT 62.271 60.000 5.49 0.00 0.00 3.36
61 62 1.823899 GGGGCTTGCCGTATTCCTG 60.824 63.158 5.49 0.00 0.00 3.86
62 63 1.823899 GGGCTTGCCGTATTCCTGG 60.824 63.158 5.49 0.00 0.00 4.45
67 68 4.849310 GCCGTATTCCTGGCGCCA 62.849 66.667 30.59 30.59 42.22 5.69
68 69 2.895372 CCGTATTCCTGGCGCCAC 60.895 66.667 29.03 14.31 0.00 5.01
69 70 2.186903 CGTATTCCTGGCGCCACT 59.813 61.111 29.03 13.13 0.00 4.00
70 71 1.440060 CGTATTCCTGGCGCCACTA 59.560 57.895 29.03 14.19 0.00 2.74
71 72 0.874607 CGTATTCCTGGCGCCACTAC 60.875 60.000 29.03 21.50 0.00 2.73
72 73 0.464452 GTATTCCTGGCGCCACTACT 59.536 55.000 29.03 13.10 0.00 2.57
73 74 0.464036 TATTCCTGGCGCCACTACTG 59.536 55.000 29.03 16.07 0.00 2.74
74 75 2.876368 ATTCCTGGCGCCACTACTGC 62.876 60.000 29.03 0.00 0.00 4.40
78 79 2.822399 GGCGCCACTACTGCCTAT 59.178 61.111 24.80 0.00 45.40 2.57
79 80 1.595382 GGCGCCACTACTGCCTATG 60.595 63.158 24.80 0.00 45.40 2.23
80 81 1.441729 GCGCCACTACTGCCTATGA 59.558 57.895 0.00 0.00 0.00 2.15
81 82 0.598680 GCGCCACTACTGCCTATGAG 60.599 60.000 0.00 0.00 0.00 2.90
82 83 0.598680 CGCCACTACTGCCTATGAGC 60.599 60.000 0.00 0.00 0.00 4.26
83 84 0.465705 GCCACTACTGCCTATGAGCA 59.534 55.000 0.00 0.00 41.46 4.26
84 85 1.808133 GCCACTACTGCCTATGAGCAC 60.808 57.143 0.00 0.00 38.00 4.40
85 86 1.202580 CCACTACTGCCTATGAGCACC 60.203 57.143 0.00 0.00 38.00 5.01
86 87 1.759445 CACTACTGCCTATGAGCACCT 59.241 52.381 0.00 0.00 38.00 4.00
87 88 2.035632 ACTACTGCCTATGAGCACCTC 58.964 52.381 0.00 0.00 38.00 3.85
88 89 1.342819 CTACTGCCTATGAGCACCTCC 59.657 57.143 0.00 0.00 38.00 4.30
89 90 1.068753 CTGCCTATGAGCACCTCCG 59.931 63.158 0.00 0.00 38.00 4.63
90 91 1.381191 TGCCTATGAGCACCTCCGA 60.381 57.895 0.00 0.00 38.00 4.55
91 92 1.365633 GCCTATGAGCACCTCCGAG 59.634 63.158 0.00 0.00 0.00 4.63
92 93 1.109920 GCCTATGAGCACCTCCGAGA 61.110 60.000 0.00 0.00 0.00 4.04
93 94 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
94 95 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
95 96 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
96 97 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
97 98 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
98 99 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
99 100 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
100 101 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
101 102 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
102 103 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
103 104 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
104 105 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
105 106 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
106 107 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
107 108 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
108 109 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
109 110 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
110 111 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
111 112 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
112 113 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
113 114 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
114 115 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
115 116 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
116 117 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
117 118 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
118 119 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
119 120 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
120 121 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
121 122 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
122 123 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
123 124 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
124 125 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
125 126 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
126 127 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
127 128 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
128 129 8.182881 GGCATATCATCTTGAGATTTATGAAGC 58.817 37.037 17.06 8.94 33.82 3.86
129 130 8.182881 GCATATCATCTTGAGATTTATGAAGCC 58.817 37.037 17.06 4.27 33.82 4.35
130 131 9.227777 CATATCATCTTGAGATTTATGAAGCCA 57.772 33.333 11.67 0.00 33.82 4.75
131 132 6.932356 TCATCTTGAGATTTATGAAGCCAC 57.068 37.500 0.00 0.00 31.21 5.01
132 133 5.824624 TCATCTTGAGATTTATGAAGCCACC 59.175 40.000 0.00 0.00 31.21 4.61
133 134 4.191544 TCTTGAGATTTATGAAGCCACCG 58.808 43.478 0.00 0.00 0.00 4.94
134 135 3.627395 TGAGATTTATGAAGCCACCGT 57.373 42.857 0.00 0.00 0.00 4.83
135 136 4.746535 TGAGATTTATGAAGCCACCGTA 57.253 40.909 0.00 0.00 0.00 4.02
136 137 4.693283 TGAGATTTATGAAGCCACCGTAG 58.307 43.478 0.00 0.00 0.00 3.51
148 149 3.900892 CCGTAGGCGCCTCGTCAT 61.901 66.667 36.73 11.27 46.14 3.06
149 150 2.353607 CGTAGGCGCCTCGTCATC 60.354 66.667 36.73 15.88 32.13 2.92
150 151 2.353607 GTAGGCGCCTCGTCATCG 60.354 66.667 36.73 0.00 32.13 3.84
151 152 2.515290 TAGGCGCCTCGTCATCGA 60.515 61.111 36.73 10.36 44.12 3.59
152 153 2.831366 TAGGCGCCTCGTCATCGAC 61.831 63.158 36.73 0.00 41.35 4.20
172 173 3.516578 GGAACGTCTTCTCCCACTG 57.483 57.895 0.00 0.00 0.00 3.66
173 174 0.966920 GGAACGTCTTCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
174 175 1.343465 GGAACGTCTTCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
175 176 2.224209 GGAACGTCTTCTCCCACTGAAA 60.224 50.000 0.00 0.00 0.00 2.69
176 177 2.821991 ACGTCTTCTCCCACTGAAAG 57.178 50.000 0.00 0.00 42.29 2.62
177 178 1.270358 ACGTCTTCTCCCACTGAAAGC 60.270 52.381 0.00 0.00 37.60 3.51
178 179 1.433534 GTCTTCTCCCACTGAAAGCG 58.566 55.000 0.00 0.00 37.60 4.68
179 180 0.320771 TCTTCTCCCACTGAAAGCGC 60.321 55.000 0.00 0.00 37.60 5.92
180 181 0.603707 CTTCTCCCACTGAAAGCGCA 60.604 55.000 11.47 0.00 37.60 6.09
181 182 0.036732 TTCTCCCACTGAAAGCGCAT 59.963 50.000 11.47 0.00 37.60 4.73
182 183 0.391661 TCTCCCACTGAAAGCGCATC 60.392 55.000 11.47 8.39 37.60 3.91
183 184 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
194 195 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
195 196 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
196 197 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
197 198 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
198 199 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
199 200 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
200 201 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
201 202 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
202 203 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
203 204 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
204 205 6.202516 TCGCCGAAAATCCTGAAATAAATT 57.797 33.333 0.00 0.00 0.00 1.82
205 206 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
206 207 6.033341 CGCCGAAAATCCTGAAATAAATTCA 58.967 36.000 0.00 0.00 45.71 2.57
220 221 9.236691 TGAAATAAATTCAGAAATAATGCGAGC 57.763 29.630 0.00 0.00 43.08 5.03
221 222 9.236691 GAAATAAATTCAGAAATAATGCGAGCA 57.763 29.630 0.00 0.00 37.99 4.26
222 223 8.566008 AATAAATTCAGAAATAATGCGAGCAC 57.434 30.769 0.00 0.00 0.00 4.40
223 224 4.558538 ATTCAGAAATAATGCGAGCACC 57.441 40.909 0.00 0.00 0.00 5.01
224 225 2.984562 TCAGAAATAATGCGAGCACCA 58.015 42.857 0.00 0.00 0.00 4.17
225 226 2.938451 TCAGAAATAATGCGAGCACCAG 59.062 45.455 0.00 0.00 0.00 4.00
226 227 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
227 228 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
228 229 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
229 230 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
230 231 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
231 232 2.418368 AATGCGAGCACCAGGATTTA 57.582 45.000 0.00 0.00 0.00 1.40
232 233 2.418368 ATGCGAGCACCAGGATTTAA 57.582 45.000 0.00 0.00 0.00 1.52
233 234 2.192664 TGCGAGCACCAGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
234 235 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
235 236 2.084546 GCGAGCACCAGGATTTAAACT 58.915 47.619 0.00 0.00 0.00 2.66
236 237 2.096013 GCGAGCACCAGGATTTAAACTC 59.904 50.000 0.00 0.00 0.00 3.01
237 238 3.600388 CGAGCACCAGGATTTAAACTCT 58.400 45.455 0.00 0.00 0.00 3.24
238 239 3.372206 CGAGCACCAGGATTTAAACTCTG 59.628 47.826 10.87 10.87 0.00 3.35
239 240 4.579869 GAGCACCAGGATTTAAACTCTGA 58.420 43.478 16.67 0.00 0.00 3.27
240 241 5.184892 AGCACCAGGATTTAAACTCTGAT 57.815 39.130 16.67 2.00 0.00 2.90
241 242 4.946157 AGCACCAGGATTTAAACTCTGATG 59.054 41.667 16.67 12.81 0.00 3.07
242 243 4.096984 GCACCAGGATTTAAACTCTGATGG 59.903 45.833 16.67 10.14 0.00 3.51
243 244 4.641989 CACCAGGATTTAAACTCTGATGGG 59.358 45.833 16.67 6.66 0.00 4.00
244 245 4.292306 ACCAGGATTTAAACTCTGATGGGT 59.708 41.667 16.67 7.13 0.00 4.51
245 246 5.222337 ACCAGGATTTAAACTCTGATGGGTT 60.222 40.000 16.67 0.00 0.00 4.11
246 247 5.126061 CCAGGATTTAAACTCTGATGGGTTG 59.874 44.000 16.67 0.81 0.00 3.77
247 248 5.126061 CAGGATTTAAACTCTGATGGGTTGG 59.874 44.000 11.95 0.00 0.00 3.77
248 249 5.015178 AGGATTTAAACTCTGATGGGTTGGA 59.985 40.000 0.00 0.00 0.00 3.53
249 250 5.358160 GGATTTAAACTCTGATGGGTTGGAG 59.642 44.000 0.00 0.00 0.00 3.86
250 251 5.576563 TTTAAACTCTGATGGGTTGGAGA 57.423 39.130 0.00 0.00 0.00 3.71
251 252 5.779241 TTAAACTCTGATGGGTTGGAGAT 57.221 39.130 0.00 0.00 0.00 2.75
252 253 6.884472 TTAAACTCTGATGGGTTGGAGATA 57.116 37.500 0.00 0.00 0.00 1.98
253 254 4.762289 AACTCTGATGGGTTGGAGATAC 57.238 45.455 0.00 0.00 0.00 2.24
254 255 3.041946 ACTCTGATGGGTTGGAGATACC 58.958 50.000 0.00 0.00 39.54 2.73
264 265 1.568504 TGGAGATACCACTGTCCACC 58.431 55.000 0.00 0.00 44.64 4.61
265 266 1.078823 TGGAGATACCACTGTCCACCT 59.921 52.381 0.00 0.00 44.64 4.00
266 267 2.313643 TGGAGATACCACTGTCCACCTA 59.686 50.000 0.00 0.00 44.64 3.08
267 268 3.245839 TGGAGATACCACTGTCCACCTAA 60.246 47.826 0.00 0.00 44.64 2.69
268 269 3.132467 GGAGATACCACTGTCCACCTAAC 59.868 52.174 0.00 0.00 38.79 2.34
269 270 3.105283 AGATACCACTGTCCACCTAACC 58.895 50.000 0.00 0.00 0.00 2.85
270 271 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
271 272 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
272 273 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
273 274 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
274 275 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
275 276 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
276 277 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
277 278 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
278 279 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
279 280 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
280 281 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
281 282 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
282 283 3.308402 CCACCTAACCATCTCAACCACAT 60.308 47.826 0.00 0.00 0.00 3.21
283 284 3.691118 CACCTAACCATCTCAACCACATG 59.309 47.826 0.00 0.00 0.00 3.21
284 285 3.330701 ACCTAACCATCTCAACCACATGT 59.669 43.478 0.00 0.00 0.00 3.21
285 286 4.202567 ACCTAACCATCTCAACCACATGTT 60.203 41.667 0.00 0.00 37.80 2.71
297 298 3.913548 CCACATGTTGGTTCGATTTCA 57.086 42.857 0.00 0.00 41.10 2.69
298 299 4.235939 CCACATGTTGGTTCGATTTCAA 57.764 40.909 0.00 0.00 41.10 2.69
299 300 3.980775 CCACATGTTGGTTCGATTTCAAC 59.019 43.478 14.90 14.90 41.10 3.18
300 301 3.980775 CACATGTTGGTTCGATTTCAACC 59.019 43.478 17.43 9.24 43.35 3.77
309 310 6.927933 GGTTCGATTTCAACCAAAACTATG 57.072 37.500 0.00 0.00 42.68 2.23
310 311 6.674066 GGTTCGATTTCAACCAAAACTATGA 58.326 36.000 0.00 0.00 42.68 2.15
311 312 7.142680 GGTTCGATTTCAACCAAAACTATGAA 58.857 34.615 0.00 0.00 42.68 2.57
312 313 7.650104 GGTTCGATTTCAACCAAAACTATGAAA 59.350 33.333 0.00 2.69 42.68 2.69
313 314 8.476925 GTTCGATTTCAACCAAAACTATGAAAC 58.523 33.333 2.28 0.00 42.57 2.78
314 315 6.853872 TCGATTTCAACCAAAACTATGAAACG 59.146 34.615 2.28 8.19 42.57 3.60
315 316 6.398517 CGATTTCAACCAAAACTATGAAACGC 60.399 38.462 2.28 0.00 42.57 4.84
316 317 3.879427 TCAACCAAAACTATGAAACGCG 58.121 40.909 3.53 3.53 0.00 6.01
317 318 3.560481 TCAACCAAAACTATGAAACGCGA 59.440 39.130 15.93 0.00 0.00 5.87
318 319 4.035324 TCAACCAAAACTATGAAACGCGAA 59.965 37.500 15.93 0.00 0.00 4.70
319 320 4.555348 ACCAAAACTATGAAACGCGAAA 57.445 36.364 15.93 0.00 0.00 3.46
320 321 4.922719 ACCAAAACTATGAAACGCGAAAA 58.077 34.783 15.93 0.00 0.00 2.29
321 322 5.525199 ACCAAAACTATGAAACGCGAAAAT 58.475 33.333 15.93 3.15 0.00 1.82
322 323 5.980715 ACCAAAACTATGAAACGCGAAAATT 59.019 32.000 15.93 1.39 0.00 1.82
323 324 7.140048 ACCAAAACTATGAAACGCGAAAATTA 58.860 30.769 15.93 0.00 0.00 1.40
324 325 7.810759 ACCAAAACTATGAAACGCGAAAATTAT 59.189 29.630 15.93 1.70 0.00 1.28
325 326 9.279904 CCAAAACTATGAAACGCGAAAATTATA 57.720 29.630 15.93 2.88 0.00 0.98
328 329 9.498307 AAACTATGAAACGCGAAAATTATAAGG 57.502 29.630 15.93 0.00 0.00 2.69
329 330 7.636326 ACTATGAAACGCGAAAATTATAAGGG 58.364 34.615 15.93 0.00 0.00 3.95
330 331 5.883503 TGAAACGCGAAAATTATAAGGGT 57.116 34.783 15.93 0.00 0.00 4.34
331 332 6.256912 TGAAACGCGAAAATTATAAGGGTT 57.743 33.333 15.93 0.00 39.16 4.11
332 333 6.679843 TGAAACGCGAAAATTATAAGGGTTT 58.320 32.000 15.93 13.27 45.86 3.27
333 334 7.814642 TGAAACGCGAAAATTATAAGGGTTTA 58.185 30.769 15.93 4.48 44.18 2.01
334 335 8.295288 TGAAACGCGAAAATTATAAGGGTTTAA 58.705 29.630 15.93 6.91 44.18 1.52
335 336 8.451687 AAACGCGAAAATTATAAGGGTTTAAC 57.548 30.769 15.93 0.00 43.01 2.01
336 337 6.554419 ACGCGAAAATTATAAGGGTTTAACC 58.446 36.000 15.93 5.40 37.60 2.85
337 338 6.150809 ACGCGAAAATTATAAGGGTTTAACCA 59.849 34.615 15.93 0.00 41.02 3.67
338 339 6.469915 CGCGAAAATTATAAGGGTTTAACCAC 59.530 38.462 16.58 5.54 41.02 4.16
339 340 6.469915 GCGAAAATTATAAGGGTTTAACCACG 59.530 38.462 16.58 5.04 41.02 4.94
340 341 6.968335 CGAAAATTATAAGGGTTTAACCACGG 59.032 38.462 16.58 0.00 41.02 4.94
341 342 7.361971 CGAAAATTATAAGGGTTTAACCACGGT 60.362 37.037 16.58 1.88 41.02 4.83
342 343 6.762702 AATTATAAGGGTTTAACCACGGTG 57.237 37.500 16.58 0.00 41.02 4.94
343 344 3.793819 ATAAGGGTTTAACCACGGTGT 57.206 42.857 16.58 0.00 41.02 4.16
344 345 1.682740 AAGGGTTTAACCACGGTGTG 58.317 50.000 16.58 1.36 41.02 3.82
345 346 0.820482 AGGGTTTAACCACGGTGTGC 60.820 55.000 16.58 0.00 41.02 4.57
346 347 0.820482 GGGTTTAACCACGGTGTGCT 60.820 55.000 16.58 0.00 41.02 4.40
347 348 1.542987 GGGTTTAACCACGGTGTGCTA 60.543 52.381 16.58 0.00 41.02 3.49
348 349 1.802365 GGTTTAACCACGGTGTGCTAG 59.198 52.381 9.56 0.00 38.42 3.42
349 350 2.548493 GGTTTAACCACGGTGTGCTAGA 60.548 50.000 9.56 0.00 38.42 2.43
350 351 2.443887 TTAACCACGGTGTGCTAGAC 57.556 50.000 7.45 0.00 31.34 2.59
359 360 2.159240 CGGTGTGCTAGACATGCTCTTA 60.159 50.000 0.00 0.00 36.78 2.10
361 362 3.190874 GTGTGCTAGACATGCTCTTACC 58.809 50.000 0.00 0.00 36.78 2.85
371 372 0.179043 TGCTCTTACCGCCAAACACA 60.179 50.000 0.00 0.00 0.00 3.72
382 384 1.677052 GCCAAACACAGACCCGTAAAA 59.323 47.619 0.00 0.00 0.00 1.52
555 557 3.893326 TCAGAATCCACGTGACATGAT 57.107 42.857 19.30 8.23 0.00 2.45
556 558 3.524541 TCAGAATCCACGTGACATGATG 58.475 45.455 19.30 10.63 0.00 3.07
570 572 0.976073 ATGATGTCCCGAGGTCCGTT 60.976 55.000 0.00 0.00 36.31 4.44
608 611 2.462889 CAACGTTTGACAAATGCTGCT 58.537 42.857 18.10 0.00 0.00 4.24
711 714 0.599204 TGAACCGCTCGTCAGAAACC 60.599 55.000 0.00 0.00 0.00 3.27
725 728 1.880819 GAAACCTGCCGACCCTACGA 61.881 60.000 0.00 0.00 35.09 3.43
843 846 0.247185 CGCAAGTTGGCCATTTGGAT 59.753 50.000 24.06 1.37 37.39 3.41
960 979 3.590630 AGAGTCTACCTGGGTACAGTACA 59.409 47.826 12.89 0.00 43.36 2.90
1032 1062 2.490903 ACTCGTGCTCTTGTTACGGTAT 59.509 45.455 0.00 0.00 38.29 2.73
1120 1150 3.723245 TCGTCCTCCCGAGAGAGA 58.277 61.111 0.00 0.00 43.39 3.10
1121 1151 1.523046 TCGTCCTCCCGAGAGAGAG 59.477 63.158 0.00 0.00 43.39 3.20
1561 1615 3.369388 GAGGGGGAGGAGGGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
1734 1788 2.252714 GGTCCTCAACCTCTTCTGAGT 58.747 52.381 0.00 0.00 45.45 3.41
1735 1789 2.635427 GGTCCTCAACCTCTTCTGAGTT 59.365 50.000 0.00 0.00 45.45 3.01
1745 1799 0.241213 CTTCTGAGTTCTGACGCCGA 59.759 55.000 0.00 0.00 0.00 5.54
1748 1802 2.504244 GAGTTCTGACGCCGACGG 60.504 66.667 10.29 10.29 46.04 4.79
1848 1902 8.462811 CAGCATTCGGTGTATAGAACTATAGAT 58.537 37.037 6.78 0.00 35.85 1.98
1890 1944 7.442656 TGATTTCTTCTTCCTTCTTCGTACTT 58.557 34.615 0.00 0.00 0.00 2.24
1892 1946 8.760103 ATTTCTTCTTCCTTCTTCGTACTTAC 57.240 34.615 0.00 0.00 0.00 2.34
1894 1948 7.143514 TCTTCTTCCTTCTTCGTACTTACTC 57.856 40.000 0.00 0.00 0.00 2.59
1895 1949 5.893897 TCTTCCTTCTTCGTACTTACTCC 57.106 43.478 0.00 0.00 0.00 3.85
2003 2060 3.988976 TCCTCTGCAACTAAGATGCTT 57.011 42.857 5.85 0.00 44.14 3.91
2184 2268 4.573201 CGGAGAAGATAGATCGATAGGGAC 59.427 50.000 0.00 0.00 0.00 4.46
2191 2275 3.210232 AGATCGATAGGGACGACTTGA 57.790 47.619 0.00 0.00 42.37 3.02
2213 2297 2.996395 CAGGCCAGCCATCTGTCT 59.004 61.111 12.03 0.00 38.66 3.41
2289 2378 0.391228 GTTGGGGCAAACGTCCAAAT 59.609 50.000 7.19 0.00 41.54 2.32
2300 2389 2.851195 ACGTCCAAATTGTTGCTCTCT 58.149 42.857 0.00 0.00 33.01 3.10
2310 2399 6.365970 AATTGTTGCTCTCTTCTCCTCTTA 57.634 37.500 0.00 0.00 0.00 2.10
2316 2405 5.019470 TGCTCTCTTCTCCTCTTATGTTCA 58.981 41.667 0.00 0.00 0.00 3.18
2360 2449 4.744136 AGTTAAAAGCGAAAGGTAGCAC 57.256 40.909 0.00 0.00 43.76 4.40
2391 2502 5.233083 TGCCAGATAGATGGTGATAAAGG 57.767 43.478 0.00 0.00 42.75 3.11
2399 2510 5.053978 AGATGGTGATAAAGGGCTAAAGG 57.946 43.478 0.00 0.00 0.00 3.11
2416 2527 2.413142 GGCCATCTGCTCTTGTGCC 61.413 63.158 0.00 0.00 40.92 5.01
2463 2575 0.442310 CCCACATCGTACTTGCGTTG 59.558 55.000 0.00 0.00 37.52 4.10
2481 2593 0.036164 TGGATCTCGTTGGTTGGGTG 59.964 55.000 0.00 0.00 0.00 4.61
2483 2595 0.036306 GATCTCGTTGGTTGGGTGGT 59.964 55.000 0.00 0.00 0.00 4.16
2484 2596 1.276989 GATCTCGTTGGTTGGGTGGTA 59.723 52.381 0.00 0.00 0.00 3.25
2485 2597 1.129917 TCTCGTTGGTTGGGTGGTAA 58.870 50.000 0.00 0.00 0.00 2.85
2486 2598 1.202675 TCTCGTTGGTTGGGTGGTAAC 60.203 52.381 0.00 0.00 0.00 2.50
2500 2619 3.603532 GTGGTAACTGGTAAGCTAACCC 58.396 50.000 0.00 0.00 38.90 4.11
2515 2634 2.747460 CCCCACCATCACACGCAG 60.747 66.667 0.00 0.00 0.00 5.18
2519 2638 1.678728 CCCACCATCACACGCAGTATT 60.679 52.381 0.00 0.00 41.61 1.89
2526 2645 4.740205 CCATCACACGCAGTATTGTAGTAG 59.260 45.833 0.00 0.00 41.61 2.57
2528 2647 6.459161 CCATCACACGCAGTATTGTAGTAGTA 60.459 42.308 0.00 0.00 41.61 1.82
2529 2648 6.115450 TCACACGCAGTATTGTAGTAGTAG 57.885 41.667 0.00 0.00 41.61 2.57
2551 3081 1.670811 AGCACTGCTGTACACAAACAC 59.329 47.619 1.67 0.00 37.57 3.32
2575 3110 0.598065 GTGAAAGCTTGGATGCGGTT 59.402 50.000 0.00 0.00 38.13 4.44
2576 3111 0.881118 TGAAAGCTTGGATGCGGTTC 59.119 50.000 0.00 0.00 38.13 3.62
2577 3112 0.179189 GAAAGCTTGGATGCGGTTCG 60.179 55.000 0.00 0.00 38.13 3.95
2578 3113 0.889186 AAAGCTTGGATGCGGTTCGT 60.889 50.000 0.00 0.00 38.13 3.85
2579 3114 1.298859 AAGCTTGGATGCGGTTCGTC 61.299 55.000 0.00 0.00 38.13 4.20
2580 3115 1.741770 GCTTGGATGCGGTTCGTCT 60.742 57.895 0.00 0.00 0.00 4.18
2582 3117 2.004583 CTTGGATGCGGTTCGTCTAA 57.995 50.000 0.00 0.00 31.54 2.10
2648 4926 3.309954 GCGAGCTTATCTCATTTCCGTTT 59.690 43.478 0.00 0.00 41.98 3.60
2685 4963 4.090057 GGCGGACAAAGACAGCGC 62.090 66.667 0.00 0.00 0.00 5.92
2753 5031 2.178521 CGAGGAACGGGTCTGACG 59.821 66.667 1.07 0.00 38.46 4.35
2754 5032 2.572284 GAGGAACGGGTCTGACGG 59.428 66.667 1.07 0.00 35.23 4.79
2755 5033 1.975407 GAGGAACGGGTCTGACGGA 60.975 63.158 1.07 0.00 35.23 4.69
2756 5034 2.210341 GAGGAACGGGTCTGACGGAC 62.210 65.000 5.81 5.81 43.79 4.79
2757 5035 2.126580 GAACGGGTCTGACGGACG 60.127 66.667 8.32 13.86 45.35 4.79
2758 5036 3.621892 GAACGGGTCTGACGGACGG 62.622 68.421 17.79 5.57 45.35 4.79
2759 5037 4.648626 ACGGGTCTGACGGACGGA 62.649 66.667 17.79 0.00 45.35 4.69
2827 5105 2.505982 GCTTCAGCCGCCCAGATA 59.494 61.111 0.00 0.00 34.31 1.98
2828 5106 1.889573 GCTTCAGCCGCCCAGATAC 60.890 63.158 0.00 0.00 34.31 2.24
2829 5107 1.826024 CTTCAGCCGCCCAGATACT 59.174 57.895 0.00 0.00 0.00 2.12
2830 5108 1.040646 CTTCAGCCGCCCAGATACTA 58.959 55.000 0.00 0.00 0.00 1.82
2831 5109 0.750850 TTCAGCCGCCCAGATACTAC 59.249 55.000 0.00 0.00 0.00 2.73
2832 5110 0.396556 TCAGCCGCCCAGATACTACA 60.397 55.000 0.00 0.00 0.00 2.74
2833 5111 0.464036 CAGCCGCCCAGATACTACAA 59.536 55.000 0.00 0.00 0.00 2.41
2834 5112 0.753262 AGCCGCCCAGATACTACAAG 59.247 55.000 0.00 0.00 0.00 3.16
2835 5113 0.880718 GCCGCCCAGATACTACAAGC 60.881 60.000 0.00 0.00 0.00 4.01
2836 5114 0.464036 CCGCCCAGATACTACAAGCA 59.536 55.000 0.00 0.00 0.00 3.91
2837 5115 1.134521 CCGCCCAGATACTACAAGCAA 60.135 52.381 0.00 0.00 0.00 3.91
2838 5116 2.205074 CGCCCAGATACTACAAGCAAG 58.795 52.381 0.00 0.00 0.00 4.01
2839 5117 1.943340 GCCCAGATACTACAAGCAAGC 59.057 52.381 0.00 0.00 0.00 4.01
2840 5118 2.680805 GCCCAGATACTACAAGCAAGCA 60.681 50.000 0.00 0.00 0.00 3.91
2841 5119 2.939103 CCCAGATACTACAAGCAAGCAC 59.061 50.000 0.00 0.00 0.00 4.40
2842 5120 3.599343 CCAGATACTACAAGCAAGCACA 58.401 45.455 0.00 0.00 0.00 4.57
2843 5121 3.620374 CCAGATACTACAAGCAAGCACAG 59.380 47.826 0.00 0.00 0.00 3.66
2844 5122 3.620374 CAGATACTACAAGCAAGCACAGG 59.380 47.826 0.00 0.00 0.00 4.00
2845 5123 2.472695 TACTACAAGCAAGCACAGGG 57.527 50.000 0.00 0.00 0.00 4.45
2846 5124 0.890996 ACTACAAGCAAGCACAGGGC 60.891 55.000 0.00 0.00 45.30 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.816835 CCTTCGTCCACTGTAGCTACA 59.183 52.381 24.63 24.63 34.56 2.74
7 8 1.817447 ACCTTCGTCCACTGTAGCTAC 59.183 52.381 17.30 17.30 0.00 3.58
8 9 1.816835 CACCTTCGTCCACTGTAGCTA 59.183 52.381 0.00 0.00 0.00 3.32
9 10 0.603569 CACCTTCGTCCACTGTAGCT 59.396 55.000 0.00 0.00 0.00 3.32
10 11 0.389948 CCACCTTCGTCCACTGTAGC 60.390 60.000 0.00 0.00 0.00 3.58
11 12 0.389948 GCCACCTTCGTCCACTGTAG 60.390 60.000 0.00 0.00 0.00 2.74
12 13 1.669440 GCCACCTTCGTCCACTGTA 59.331 57.895 0.00 0.00 0.00 2.74
13 14 2.426023 GCCACCTTCGTCCACTGT 59.574 61.111 0.00 0.00 0.00 3.55
14 15 2.358737 GGCCACCTTCGTCCACTG 60.359 66.667 0.00 0.00 0.00 3.66
15 16 2.526873 AGGCCACCTTCGTCCACT 60.527 61.111 5.01 0.00 0.00 4.00
16 17 2.358737 CAGGCCACCTTCGTCCAC 60.359 66.667 5.01 0.00 0.00 4.02
17 18 3.636231 CCAGGCCACCTTCGTCCA 61.636 66.667 5.01 0.00 0.00 4.02
18 19 4.410400 CCCAGGCCACCTTCGTCC 62.410 72.222 5.01 0.00 0.00 4.79
19 20 4.410400 CCCCAGGCCACCTTCGTC 62.410 72.222 5.01 0.00 0.00 4.20
40 41 1.823899 GAATACGGCAAGCCCCAGG 60.824 63.158 5.34 0.00 0.00 4.45
41 42 1.823899 GGAATACGGCAAGCCCCAG 60.824 63.158 5.34 0.00 0.00 4.45
42 43 2.274104 GGAATACGGCAAGCCCCA 59.726 61.111 5.34 0.00 0.00 4.96
43 44 1.823899 CAGGAATACGGCAAGCCCC 60.824 63.158 5.34 0.14 0.00 5.80
44 45 1.823899 CCAGGAATACGGCAAGCCC 60.824 63.158 5.34 0.00 0.00 5.19
45 46 3.827634 CCAGGAATACGGCAAGCC 58.172 61.111 0.00 0.00 0.00 4.35
51 52 2.023414 TAGTGGCGCCAGGAATACGG 62.023 60.000 33.73 0.00 0.00 4.02
52 53 0.874607 GTAGTGGCGCCAGGAATACG 60.875 60.000 33.73 0.00 0.00 3.06
53 54 0.464452 AGTAGTGGCGCCAGGAATAC 59.536 55.000 33.73 27.12 0.00 1.89
54 55 0.464036 CAGTAGTGGCGCCAGGAATA 59.536 55.000 33.73 17.64 0.00 1.75
55 56 1.221840 CAGTAGTGGCGCCAGGAAT 59.778 57.895 33.73 17.75 0.00 3.01
56 57 2.662596 CAGTAGTGGCGCCAGGAA 59.337 61.111 33.73 15.96 0.00 3.36
57 58 4.082523 GCAGTAGTGGCGCCAGGA 62.083 66.667 33.73 18.82 0.00 3.86
65 66 1.202580 GGTGCTCATAGGCAGTAGTGG 60.203 57.143 0.00 0.00 43.25 4.00
66 67 1.759445 AGGTGCTCATAGGCAGTAGTG 59.241 52.381 0.00 0.00 43.25 2.74
67 68 2.035632 GAGGTGCTCATAGGCAGTAGT 58.964 52.381 0.00 0.00 43.25 2.73
68 69 1.342819 GGAGGTGCTCATAGGCAGTAG 59.657 57.143 0.00 0.00 43.25 2.57
69 70 1.414158 GGAGGTGCTCATAGGCAGTA 58.586 55.000 0.00 0.00 43.25 2.74
70 71 1.680522 CGGAGGTGCTCATAGGCAGT 61.681 60.000 0.00 0.00 43.25 4.40
71 72 1.068753 CGGAGGTGCTCATAGGCAG 59.931 63.158 0.00 0.00 43.25 4.85
72 73 1.381191 TCGGAGGTGCTCATAGGCA 60.381 57.895 0.00 0.00 40.15 4.75
73 74 1.109920 TCTCGGAGGTGCTCATAGGC 61.110 60.000 4.96 0.00 31.08 3.93
74 75 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
75 76 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
76 77 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
77 78 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
78 79 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
79 80 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
80 81 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
81 82 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
82 83 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
83 84 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
84 85 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
85 86 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
86 87 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
87 88 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
88 89 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
89 90 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
90 91 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
91 92 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
92 93 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
93 94 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
94 95 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
95 96 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
96 97 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
97 98 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
98 99 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
99 100 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
100 101 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
101 102 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
102 103 8.182881 GCTTCATAAATCTCAAGATGATATGCC 58.817 37.037 15.00 7.54 36.32 4.40
103 104 8.182881 GGCTTCATAAATCTCAAGATGATATGC 58.817 37.037 15.00 8.41 36.32 3.14
104 105 9.227777 TGGCTTCATAAATCTCAAGATGATATG 57.772 33.333 14.26 14.26 36.96 1.78
105 106 9.228949 GTGGCTTCATAAATCTCAAGATGATAT 57.771 33.333 0.00 0.00 34.49 1.63
106 107 7.663081 GGTGGCTTCATAAATCTCAAGATGATA 59.337 37.037 0.00 0.00 34.49 2.15
107 108 6.489361 GGTGGCTTCATAAATCTCAAGATGAT 59.511 38.462 0.00 0.00 34.49 2.45
108 109 5.824624 GGTGGCTTCATAAATCTCAAGATGA 59.175 40.000 0.00 0.00 34.49 2.92
109 110 5.277683 CGGTGGCTTCATAAATCTCAAGATG 60.278 44.000 0.00 0.00 34.49 2.90
110 111 4.818546 CGGTGGCTTCATAAATCTCAAGAT 59.181 41.667 0.00 0.00 36.07 2.40
111 112 4.191544 CGGTGGCTTCATAAATCTCAAGA 58.808 43.478 0.00 0.00 0.00 3.02
112 113 3.941483 ACGGTGGCTTCATAAATCTCAAG 59.059 43.478 0.00 0.00 0.00 3.02
113 114 3.950397 ACGGTGGCTTCATAAATCTCAA 58.050 40.909 0.00 0.00 0.00 3.02
114 115 3.627395 ACGGTGGCTTCATAAATCTCA 57.373 42.857 0.00 0.00 0.00 3.27
115 116 4.058817 CCTACGGTGGCTTCATAAATCTC 58.941 47.826 0.00 0.00 0.00 2.75
116 117 4.073293 CCTACGGTGGCTTCATAAATCT 57.927 45.455 0.00 0.00 0.00 2.40
129 130 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
131 132 3.825833 GATGACGAGGCGCCTACGG 62.826 68.421 34.97 27.37 40.57 4.02
132 133 2.353607 GATGACGAGGCGCCTACG 60.354 66.667 32.97 32.67 44.07 3.51
133 134 2.353607 CGATGACGAGGCGCCTAC 60.354 66.667 32.97 23.37 42.66 3.18
134 135 2.515290 TCGATGACGAGGCGCCTA 60.515 61.111 32.97 15.35 43.81 3.93
154 155 0.966920 TCAGTGGGAGAAGACGTTCC 59.033 55.000 0.00 0.00 32.48 3.62
155 156 2.814280 TTCAGTGGGAGAAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
156 157 2.807108 GCTTTCAGTGGGAGAAGACGTT 60.807 50.000 0.00 0.00 0.00 3.99
157 158 1.270358 GCTTTCAGTGGGAGAAGACGT 60.270 52.381 0.00 0.00 0.00 4.34
158 159 1.433534 GCTTTCAGTGGGAGAAGACG 58.566 55.000 0.00 0.00 0.00 4.18
159 160 1.433534 CGCTTTCAGTGGGAGAAGAC 58.566 55.000 0.00 0.00 0.00 3.01
160 161 0.320771 GCGCTTTCAGTGGGAGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
161 162 0.603707 TGCGCTTTCAGTGGGAGAAG 60.604 55.000 9.73 0.00 0.00 2.85
162 163 0.036732 ATGCGCTTTCAGTGGGAGAA 59.963 50.000 9.73 0.00 0.00 2.87
163 164 0.391661 GATGCGCTTTCAGTGGGAGA 60.392 55.000 9.73 0.00 0.00 3.71
164 165 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
165 166 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
166 167 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
177 178 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
178 179 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
179 180 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
180 181 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
181 182 5.828299 ATTTATTTCAGGATTTTCGGCGA 57.172 34.783 4.99 4.99 0.00 5.54
182 183 6.033341 TGAATTTATTTCAGGATTTTCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
194 195 9.236691 GCTCGCATTATTTCTGAATTTATTTCA 57.763 29.630 0.00 0.00 42.09 2.69
195 196 9.236691 TGCTCGCATTATTTCTGAATTTATTTC 57.763 29.630 0.00 0.00 34.72 2.17
196 197 9.023967 GTGCTCGCATTATTTCTGAATTTATTT 57.976 29.630 0.00 0.00 0.00 1.40
197 198 7.649306 GGTGCTCGCATTATTTCTGAATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
198 199 7.141363 GGTGCTCGCATTATTTCTGAATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
199 200 6.094742 TGGTGCTCGCATTATTTCTGAATTTA 59.905 34.615 0.00 0.00 0.00 1.40
200 201 5.105797 TGGTGCTCGCATTATTTCTGAATTT 60.106 36.000 0.00 0.00 0.00 1.82
201 202 4.398988 TGGTGCTCGCATTATTTCTGAATT 59.601 37.500 0.00 0.00 0.00 2.17
202 203 3.947196 TGGTGCTCGCATTATTTCTGAAT 59.053 39.130 0.00 0.00 0.00 2.57
203 204 3.342719 TGGTGCTCGCATTATTTCTGAA 58.657 40.909 0.00 0.00 0.00 3.02
204 205 2.938451 CTGGTGCTCGCATTATTTCTGA 59.062 45.455 0.00 0.00 0.00 3.27
205 206 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
206 207 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
207 208 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
208 209 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
209 210 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
210 211 2.645838 AATCCTGGTGCTCGCATTAT 57.354 45.000 0.00 0.00 0.00 1.28
211 212 2.418368 AAATCCTGGTGCTCGCATTA 57.582 45.000 0.00 0.00 0.00 1.90
212 213 2.418368 TAAATCCTGGTGCTCGCATT 57.582 45.000 0.00 0.00 0.00 3.56
213 214 2.418368 TTAAATCCTGGTGCTCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
214 215 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
215 216 2.084546 AGTTTAAATCCTGGTGCTCGC 58.915 47.619 0.00 0.00 0.00 5.03
216 217 3.372206 CAGAGTTTAAATCCTGGTGCTCG 59.628 47.826 10.30 0.00 0.00 5.03
217 218 4.579869 TCAGAGTTTAAATCCTGGTGCTC 58.420 43.478 15.35 5.43 0.00 4.26
218 219 4.640771 TCAGAGTTTAAATCCTGGTGCT 57.359 40.909 15.35 0.00 0.00 4.40
219 220 4.096984 CCATCAGAGTTTAAATCCTGGTGC 59.903 45.833 19.42 0.00 36.66 5.01
220 221 4.641989 CCCATCAGAGTTTAAATCCTGGTG 59.358 45.833 18.54 18.54 37.47 4.17
221 222 4.292306 ACCCATCAGAGTTTAAATCCTGGT 59.708 41.667 15.35 8.93 0.00 4.00
222 223 4.860022 ACCCATCAGAGTTTAAATCCTGG 58.140 43.478 15.35 9.95 0.00 4.45
223 224 5.126061 CCAACCCATCAGAGTTTAAATCCTG 59.874 44.000 11.39 11.39 0.00 3.86
224 225 5.015178 TCCAACCCATCAGAGTTTAAATCCT 59.985 40.000 0.00 0.00 0.00 3.24
225 226 5.261216 TCCAACCCATCAGAGTTTAAATCC 58.739 41.667 0.00 0.00 0.00 3.01
226 227 6.180472 TCTCCAACCCATCAGAGTTTAAATC 58.820 40.000 0.00 0.00 0.00 2.17
227 228 6.139679 TCTCCAACCCATCAGAGTTTAAAT 57.860 37.500 0.00 0.00 0.00 1.40
228 229 5.576563 TCTCCAACCCATCAGAGTTTAAA 57.423 39.130 0.00 0.00 0.00 1.52
229 230 5.779241 ATCTCCAACCCATCAGAGTTTAA 57.221 39.130 0.00 0.00 0.00 1.52
230 231 5.130477 GGTATCTCCAACCCATCAGAGTTTA 59.870 44.000 0.00 0.00 35.97 2.01
231 232 4.080299 GGTATCTCCAACCCATCAGAGTTT 60.080 45.833 0.00 0.00 35.97 2.66
232 233 3.456277 GGTATCTCCAACCCATCAGAGTT 59.544 47.826 0.00 0.00 35.97 3.01
233 234 3.041946 GGTATCTCCAACCCATCAGAGT 58.958 50.000 0.00 0.00 35.97 3.24
234 235 3.041211 TGGTATCTCCAACCCATCAGAG 58.959 50.000 0.00 0.00 44.12 3.35
235 236 3.129262 TGGTATCTCCAACCCATCAGA 57.871 47.619 0.00 0.00 44.12 3.27
245 246 1.078823 AGGTGGACAGTGGTATCTCCA 59.921 52.381 0.00 0.00 45.01 3.86
246 247 1.867363 AGGTGGACAGTGGTATCTCC 58.133 55.000 0.00 0.00 0.00 3.71
247 248 3.132467 GGTTAGGTGGACAGTGGTATCTC 59.868 52.174 0.00 0.00 0.00 2.75
248 249 3.105283 GGTTAGGTGGACAGTGGTATCT 58.895 50.000 0.00 0.00 0.00 1.98
249 250 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
250 251 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
251 252 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
252 253 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
253 254 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
254 255 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
255 256 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
256 257 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
257 258 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
258 259 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
259 260 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
260 261 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
261 262 3.417069 TGTGGTTGAGATGGTTAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
262 263 3.330701 ACATGTGGTTGAGATGGTTAGGT 59.669 43.478 0.00 0.00 29.21 3.08
263 264 3.955471 ACATGTGGTTGAGATGGTTAGG 58.045 45.455 0.00 0.00 29.21 2.69
278 279 3.980775 GGTTGAAATCGAACCAACATGTG 59.019 43.478 21.26 0.00 42.26 3.21
279 280 4.237349 GGTTGAAATCGAACCAACATGT 57.763 40.909 21.26 0.00 42.26 3.21
286 287 6.674066 TCATAGTTTTGGTTGAAATCGAACC 58.326 36.000 0.00 0.00 42.90 3.62
287 288 8.476925 GTTTCATAGTTTTGGTTGAAATCGAAC 58.523 33.333 0.00 0.00 39.48 3.95
288 289 7.377397 CGTTTCATAGTTTTGGTTGAAATCGAA 59.623 33.333 0.00 0.00 39.48 3.71
289 290 6.853872 CGTTTCATAGTTTTGGTTGAAATCGA 59.146 34.615 0.00 0.00 39.48 3.59
290 291 6.398517 GCGTTTCATAGTTTTGGTTGAAATCG 60.399 38.462 0.00 0.00 39.48 3.34
291 292 6.398517 CGCGTTTCATAGTTTTGGTTGAAATC 60.399 38.462 0.00 0.00 39.48 2.17
292 293 5.401079 CGCGTTTCATAGTTTTGGTTGAAAT 59.599 36.000 0.00 0.00 39.48 2.17
293 294 4.735822 CGCGTTTCATAGTTTTGGTTGAAA 59.264 37.500 0.00 0.00 36.14 2.69
294 295 4.035324 TCGCGTTTCATAGTTTTGGTTGAA 59.965 37.500 5.77 0.00 0.00 2.69
295 296 3.560481 TCGCGTTTCATAGTTTTGGTTGA 59.440 39.130 5.77 0.00 0.00 3.18
296 297 3.879427 TCGCGTTTCATAGTTTTGGTTG 58.121 40.909 5.77 0.00 0.00 3.77
297 298 4.555348 TTCGCGTTTCATAGTTTTGGTT 57.445 36.364 5.77 0.00 0.00 3.67
298 299 4.555348 TTTCGCGTTTCATAGTTTTGGT 57.445 36.364 5.77 0.00 0.00 3.67
299 300 6.446659 AATTTTCGCGTTTCATAGTTTTGG 57.553 33.333 5.77 0.00 0.00 3.28
302 303 9.498307 CCTTATAATTTTCGCGTTTCATAGTTT 57.502 29.630 5.77 0.00 0.00 2.66
303 304 8.126700 CCCTTATAATTTTCGCGTTTCATAGTT 58.873 33.333 5.77 0.00 0.00 2.24
304 305 7.281549 ACCCTTATAATTTTCGCGTTTCATAGT 59.718 33.333 5.77 0.00 0.00 2.12
305 306 7.636326 ACCCTTATAATTTTCGCGTTTCATAG 58.364 34.615 5.77 0.00 0.00 2.23
306 307 7.556733 ACCCTTATAATTTTCGCGTTTCATA 57.443 32.000 5.77 0.00 0.00 2.15
307 308 6.445357 ACCCTTATAATTTTCGCGTTTCAT 57.555 33.333 5.77 0.00 0.00 2.57
308 309 5.883503 ACCCTTATAATTTTCGCGTTTCA 57.116 34.783 5.77 0.00 0.00 2.69
309 310 8.577939 GTTAAACCCTTATAATTTTCGCGTTTC 58.422 33.333 5.77 0.00 0.00 2.78
310 311 7.541783 GGTTAAACCCTTATAATTTTCGCGTTT 59.458 33.333 5.77 0.00 30.04 3.60
311 312 7.028962 GGTTAAACCCTTATAATTTTCGCGTT 58.971 34.615 5.77 0.00 30.04 4.84
312 313 6.150809 TGGTTAAACCCTTATAATTTTCGCGT 59.849 34.615 5.77 0.00 37.50 6.01
313 314 6.469915 GTGGTTAAACCCTTATAATTTTCGCG 59.530 38.462 0.00 0.00 37.50 5.87
314 315 6.469915 CGTGGTTAAACCCTTATAATTTTCGC 59.530 38.462 0.00 0.00 37.50 4.70
315 316 6.968335 CCGTGGTTAAACCCTTATAATTTTCG 59.032 38.462 0.00 0.00 37.50 3.46
316 317 7.756272 CACCGTGGTTAAACCCTTATAATTTTC 59.244 37.037 0.00 0.00 37.50 2.29
317 318 7.233144 ACACCGTGGTTAAACCCTTATAATTTT 59.767 33.333 3.03 0.00 37.50 1.82
318 319 6.720748 ACACCGTGGTTAAACCCTTATAATTT 59.279 34.615 3.03 0.00 37.50 1.82
319 320 6.151480 CACACCGTGGTTAAACCCTTATAATT 59.849 38.462 3.03 0.00 37.50 1.40
320 321 5.648960 CACACCGTGGTTAAACCCTTATAAT 59.351 40.000 3.03 0.00 37.50 1.28
321 322 5.002516 CACACCGTGGTTAAACCCTTATAA 58.997 41.667 3.03 0.00 37.50 0.98
322 323 4.577875 CACACCGTGGTTAAACCCTTATA 58.422 43.478 3.03 0.00 37.50 0.98
323 324 3.414269 CACACCGTGGTTAAACCCTTAT 58.586 45.455 3.03 0.00 37.50 1.73
324 325 2.848691 CACACCGTGGTTAAACCCTTA 58.151 47.619 3.03 0.00 37.50 2.69
325 326 1.682740 CACACCGTGGTTAAACCCTT 58.317 50.000 3.03 0.00 37.50 3.95
326 327 0.820482 GCACACCGTGGTTAAACCCT 60.820 55.000 3.03 0.00 37.50 4.34
327 328 0.820482 AGCACACCGTGGTTAAACCC 60.820 55.000 3.03 0.00 41.72 4.11
328 329 1.802365 CTAGCACACCGTGGTTAAACC 59.198 52.381 3.94 0.00 41.72 3.27
329 330 2.477754 GTCTAGCACACCGTGGTTAAAC 59.522 50.000 3.94 0.00 41.72 2.01
330 331 2.102757 TGTCTAGCACACCGTGGTTAAA 59.897 45.455 3.94 0.00 41.72 1.52
331 332 1.687660 TGTCTAGCACACCGTGGTTAA 59.312 47.619 3.94 0.00 41.72 2.01
332 333 1.330234 TGTCTAGCACACCGTGGTTA 58.670 50.000 3.94 0.00 41.72 2.85
333 334 0.685097 ATGTCTAGCACACCGTGGTT 59.315 50.000 3.94 0.00 41.72 3.67
334 335 0.037326 CATGTCTAGCACACCGTGGT 60.037 55.000 3.03 4.09 46.27 4.16
335 336 1.361668 GCATGTCTAGCACACCGTGG 61.362 60.000 3.03 0.00 38.04 4.94
336 337 0.390340 AGCATGTCTAGCACACCGTG 60.390 55.000 0.00 0.00 38.04 4.94
337 338 0.108615 GAGCATGTCTAGCACACCGT 60.109 55.000 0.00 0.00 38.04 4.83
338 339 0.174389 AGAGCATGTCTAGCACACCG 59.826 55.000 0.00 0.00 38.04 4.94
339 340 2.393271 AAGAGCATGTCTAGCACACC 57.607 50.000 0.00 0.00 38.04 4.16
340 341 3.190874 GGTAAGAGCATGTCTAGCACAC 58.809 50.000 0.00 0.00 38.04 3.82
341 342 2.159240 CGGTAAGAGCATGTCTAGCACA 60.159 50.000 0.00 0.00 40.18 4.57
342 343 2.464865 CGGTAAGAGCATGTCTAGCAC 58.535 52.381 0.00 0.00 32.65 4.40
343 344 1.202417 GCGGTAAGAGCATGTCTAGCA 60.202 52.381 0.00 0.00 32.65 3.49
344 345 1.492720 GCGGTAAGAGCATGTCTAGC 58.507 55.000 0.00 0.00 32.65 3.42
345 346 1.409064 TGGCGGTAAGAGCATGTCTAG 59.591 52.381 0.00 0.00 32.65 2.43
346 347 1.480789 TGGCGGTAAGAGCATGTCTA 58.519 50.000 0.00 0.00 32.65 2.59
347 348 0.613260 TTGGCGGTAAGAGCATGTCT 59.387 50.000 0.00 0.00 36.94 3.41
348 349 1.130561 GTTTGGCGGTAAGAGCATGTC 59.869 52.381 0.00 0.00 36.08 3.06
349 350 1.165270 GTTTGGCGGTAAGAGCATGT 58.835 50.000 0.00 0.00 36.08 3.21
350 351 1.135689 GTGTTTGGCGGTAAGAGCATG 60.136 52.381 0.00 0.00 36.08 4.06
359 360 2.203294 GGGTCTGTGTTTGGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
361 362 0.881159 TTACGGGTCTGTGTTTGGCG 60.881 55.000 0.00 0.00 0.00 5.69
555 557 3.367743 CGAACGGACCTCGGGACA 61.368 66.667 0.00 0.00 44.45 4.02
556 558 2.809266 GAACGAACGGACCTCGGGAC 62.809 65.000 7.92 0.00 44.45 4.46
711 714 3.064987 CTGGTCGTAGGGTCGGCAG 62.065 68.421 0.00 0.00 37.15 4.85
829 832 0.896923 TCTGCATCCAAATGGCCAAC 59.103 50.000 10.96 0.00 33.19 3.77
922 925 3.262915 AGACTCTTCTGGTTGGATTGGAG 59.737 47.826 0.00 0.00 0.00 3.86
923 926 3.251484 AGACTCTTCTGGTTGGATTGGA 58.749 45.455 0.00 0.00 0.00 3.53
1105 1135 2.184167 CGCTCTCTCTCGGGAGGAC 61.184 68.421 13.54 0.00 39.86 3.85
1134 1173 3.174265 CCCCCTCCATCAGCCCTC 61.174 72.222 0.00 0.00 0.00 4.30
1748 1802 2.592861 GATGGATGTGAGCCGGGC 60.593 66.667 12.11 12.11 0.00 6.13
1848 1902 6.472887 AGAAATCAACAACGGAGGAGATTTA 58.527 36.000 0.00 0.00 36.25 1.40
1856 1910 4.757149 AGGAAGAAGAAATCAACAACGGAG 59.243 41.667 0.00 0.00 0.00 4.63
1890 1944 9.918630 GTTTTCACTTGTATTGTACTAGGAGTA 57.081 33.333 0.00 0.00 36.14 2.59
1892 1946 8.827177 TGTTTTCACTTGTATTGTACTAGGAG 57.173 34.615 0.00 0.00 36.14 3.69
1993 2050 5.230306 GCTGTAGTTCGTACAAGCATCTTAG 59.770 44.000 8.82 0.00 41.28 2.18
2003 2060 1.624487 CGCATGCTGTAGTTCGTACA 58.376 50.000 17.13 0.00 39.47 2.90
2038 2119 0.251341 GCATCCACCTCCAACCACTT 60.251 55.000 0.00 0.00 0.00 3.16
2139 2220 4.002506 TGACATCACACCGCCGCT 62.003 61.111 0.00 0.00 0.00 5.52
2213 2297 2.434185 GAACGCATCGTCAGGCCA 60.434 61.111 5.01 0.00 39.99 5.36
2274 2363 1.864082 CAACAATTTGGACGTTTGCCC 59.136 47.619 0.78 0.00 0.00 5.36
2283 2372 4.074970 GGAGAAGAGAGCAACAATTTGGA 58.925 43.478 0.78 0.00 32.81 3.53
2289 2378 5.247110 ACATAAGAGGAGAAGAGAGCAACAA 59.753 40.000 0.00 0.00 0.00 2.83
2300 2389 6.019748 AGAGAAGGTGAACATAAGAGGAGAA 58.980 40.000 0.00 0.00 0.00 2.87
2310 2399 6.777580 ACAATTGGTAAAGAGAAGGTGAACAT 59.222 34.615 10.83 0.00 0.00 2.71
2316 2405 6.833933 ACTTTCACAATTGGTAAAGAGAAGGT 59.166 34.615 27.78 15.66 33.98 3.50
2360 2449 1.227263 CTATCTGGCAACGACGGGG 60.227 63.158 0.00 0.00 42.51 5.73
2399 2510 1.676635 TGGCACAAGAGCAGATGGC 60.677 57.895 0.00 0.00 38.19 4.40
2434 2546 1.004560 CGATGTGGGCAGAGTGTGT 60.005 57.895 0.00 0.00 0.00 3.72
2463 2575 0.676782 CCACCCAACCAACGAGATCC 60.677 60.000 0.00 0.00 0.00 3.36
2481 2593 2.573009 TGGGGTTAGCTTACCAGTTACC 59.427 50.000 22.63 14.34 40.09 2.85
2483 2595 2.573009 GGTGGGGTTAGCTTACCAGTTA 59.427 50.000 22.63 3.70 40.09 2.24
2484 2596 1.353358 GGTGGGGTTAGCTTACCAGTT 59.647 52.381 22.63 0.00 40.09 3.16
2485 2597 0.989602 GGTGGGGTTAGCTTACCAGT 59.010 55.000 22.63 0.00 40.09 4.00
2486 2598 0.988832 TGGTGGGGTTAGCTTACCAG 59.011 55.000 22.63 0.00 40.09 4.00
2500 2619 1.398041 CAATACTGCGTGTGATGGTGG 59.602 52.381 0.00 0.00 0.00 4.61
2549 3079 1.165907 TCCAAGCTTTCACCGCTGTG 61.166 55.000 0.00 1.20 44.18 3.66
2551 3081 0.169672 CATCCAAGCTTTCACCGCTG 59.830 55.000 0.00 0.00 37.87 5.18
2564 3099 2.684001 ATTAGACGAACCGCATCCAA 57.316 45.000 0.00 0.00 0.00 3.53
2575 3110 2.518949 GACACGCCGTTAATTAGACGA 58.481 47.619 16.57 0.00 42.82 4.20
2576 3111 1.585214 GGACACGCCGTTAATTAGACG 59.415 52.381 11.05 11.05 40.05 4.18
2577 3112 2.346545 GTGGACACGCCGTTAATTAGAC 59.653 50.000 0.00 0.00 40.66 2.59
2578 3113 2.029200 TGTGGACACGCCGTTAATTAGA 60.029 45.455 0.00 0.00 40.66 2.10
2579 3114 2.339418 TGTGGACACGCCGTTAATTAG 58.661 47.619 0.00 0.00 40.66 1.73
2580 3115 2.452295 TGTGGACACGCCGTTAATTA 57.548 45.000 0.00 0.00 40.66 1.40
2582 3117 1.365699 GATGTGGACACGCCGTTAAT 58.634 50.000 0.00 0.00 40.66 1.40
2672 4950 3.702555 ACGCGCGCTGTCTTTGTC 61.703 61.111 32.58 0.00 0.00 3.18
2756 5034 4.547905 CATCCGTCCGTCCGTCCG 62.548 72.222 0.00 0.00 0.00 4.79
2757 5035 4.867599 GCATCCGTCCGTCCGTCC 62.868 72.222 0.00 0.00 0.00 4.79
2758 5036 3.426117 ATGCATCCGTCCGTCCGTC 62.426 63.158 0.00 0.00 0.00 4.79
2759 5037 3.458163 ATGCATCCGTCCGTCCGT 61.458 61.111 0.00 0.00 0.00 4.69
2817 5095 0.464036 TGCTTGTAGTATCTGGGCGG 59.536 55.000 0.00 0.00 0.00 6.13
2818 5096 2.205074 CTTGCTTGTAGTATCTGGGCG 58.795 52.381 0.00 0.00 0.00 6.13
2819 5097 1.943340 GCTTGCTTGTAGTATCTGGGC 59.057 52.381 0.00 0.00 0.00 5.36
2820 5098 2.939103 GTGCTTGCTTGTAGTATCTGGG 59.061 50.000 0.00 0.00 0.00 4.45
2821 5099 3.599343 TGTGCTTGCTTGTAGTATCTGG 58.401 45.455 0.00 0.00 0.00 3.86
2822 5100 3.620374 CCTGTGCTTGCTTGTAGTATCTG 59.380 47.826 0.00 0.00 0.00 2.90
2823 5101 3.369892 CCCTGTGCTTGCTTGTAGTATCT 60.370 47.826 0.00 0.00 0.00 1.98
2824 5102 2.939103 CCCTGTGCTTGCTTGTAGTATC 59.061 50.000 0.00 0.00 0.00 2.24
2825 5103 2.941415 GCCCTGTGCTTGCTTGTAGTAT 60.941 50.000 0.00 0.00 36.87 2.12
2826 5104 1.610624 GCCCTGTGCTTGCTTGTAGTA 60.611 52.381 0.00 0.00 36.87 1.82
2827 5105 0.890996 GCCCTGTGCTTGCTTGTAGT 60.891 55.000 0.00 0.00 36.87 2.73
2828 5106 1.878775 GCCCTGTGCTTGCTTGTAG 59.121 57.895 0.00 0.00 36.87 2.74
2829 5107 4.079446 GCCCTGTGCTTGCTTGTA 57.921 55.556 0.00 0.00 36.87 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.