Multiple sequence alignment - TraesCS5B01G282200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G282200 chr5B 100.000 5458 0 0 1 5458 467025717 467020260 0.000000e+00 10080.0
1 TraesCS5B01G282200 chr5B 81.818 682 60 36 148 771 596514007 596513332 1.050000e-141 514.0
2 TraesCS5B01G282200 chr5B 78.331 803 81 36 55 811 596500658 596499903 3.020000e-117 433.0
3 TraesCS5B01G282200 chr5B 93.103 87 6 0 3969 4055 402737627 402737541 1.600000e-25 128.0
4 TraesCS5B01G282200 chr5B 93.023 86 6 0 3967 4052 184285263 184285348 5.740000e-25 126.0
5 TraesCS5B01G282200 chr5B 97.500 40 1 0 405 444 596500243 596500204 9.810000e-08 69.4
6 TraesCS5B01G282200 chr5D 89.348 4309 288 74 501 4680 388600387 388596121 0.000000e+00 5256.0
7 TraesCS5B01G282200 chr5D 90.157 1788 119 28 850 2623 353968163 353966419 0.000000e+00 2274.0
8 TraesCS5B01G282200 chr5D 90.137 1166 85 13 1281 2436 353971577 353970432 0.000000e+00 1489.0
9 TraesCS5B01G282200 chr5D 92.811 932 59 4 2441 3369 353970393 353969467 0.000000e+00 1343.0
10 TraesCS5B01G282200 chr5D 89.629 1051 73 14 1393 2436 388385515 388384494 0.000000e+00 1304.0
11 TraesCS5B01G282200 chr5D 88.260 937 75 21 2441 3370 388384387 388383479 0.000000e+00 1088.0
12 TraesCS5B01G282200 chr5D 93.249 711 40 4 2663 3370 353959773 353959068 0.000000e+00 1040.0
13 TraesCS5B01G282200 chr5D 88.087 554 55 6 4074 4626 353968720 353968177 0.000000e+00 647.0
14 TraesCS5B01G282200 chr5D 80.549 802 77 41 29 771 484667794 484668575 1.340000e-150 544.0
15 TraesCS5B01G282200 chr5D 89.425 435 38 5 4074 4502 388382860 388382428 4.810000e-150 542.0
16 TraesCS5B01G282200 chr5D 82.306 633 73 16 3368 3966 353956592 353955965 3.770000e-141 512.0
17 TraesCS5B01G282200 chr5D 79.462 818 84 46 29 771 484704864 484705672 2.270000e-138 503.0
18 TraesCS5B01G282200 chr5D 85.375 506 28 13 9 504 388602453 388601984 2.960000e-132 483.0
19 TraesCS5B01G282200 chr5D 85.556 450 29 16 4074 4488 353955971 353955523 6.490000e-119 438.0
20 TraesCS5B01G282200 chr5D 87.277 393 26 13 5071 5458 388593178 388592805 1.400000e-115 427.0
21 TraesCS5B01G282200 chr5D 84.141 454 36 17 847 1287 388385971 388385541 1.830000e-109 407.0
22 TraesCS5B01G282200 chr5D 88.393 336 29 7 817 1145 353950090 353949758 3.960000e-106 396.0
23 TraesCS5B01G282200 chr5D 79.167 624 74 26 3368 3966 388383446 388382854 1.110000e-101 381.0
24 TraesCS5B01G282200 chr5D 88.924 316 17 10 5151 5458 388381961 388381656 1.860000e-99 374.0
25 TraesCS5B01G282200 chr5D 89.251 307 17 8 5153 5458 388413018 388412727 2.400000e-98 370.0
26 TraesCS5B01G282200 chr5D 86.381 257 16 8 5203 5458 353954975 353954737 4.190000e-66 263.0
27 TraesCS5B01G282200 chr5D 88.000 200 14 8 4482 4679 353955364 353955173 1.530000e-55 228.0
28 TraesCS5B01G282200 chr5D 88.202 178 15 4 5284 5458 386959488 386959314 1.990000e-49 207.0
29 TraesCS5B01G282200 chr5D 76.608 342 61 16 3367 3697 353969434 353969101 2.610000e-38 171.0
30 TraesCS5B01G282200 chr5D 88.976 127 11 3 4555 4680 388382417 388382293 2.630000e-33 154.0
31 TraesCS5B01G282200 chr5D 89.474 95 9 1 3962 4055 128577680 128577586 9.600000e-23 119.0
32 TraesCS5B01G282200 chr5A 93.186 1849 96 17 1532 3370 491588767 491586939 0.000000e+00 2689.0
33 TraesCS5B01G282200 chr5A 90.520 1846 117 26 932 2752 491573595 491571783 0.000000e+00 2386.0
34 TraesCS5B01G282200 chr5A 89.474 1482 93 29 52 1481 491590256 491588786 0.000000e+00 1814.0
35 TraesCS5B01G282200 chr5A 88.981 1325 84 22 3367 4650 491586912 491585609 0.000000e+00 1581.0
36 TraesCS5B01G282200 chr5A 91.158 622 34 7 2768 3368 491571797 491571176 0.000000e+00 824.0
37 TraesCS5B01G282200 chr5A 89.786 421 38 4 4085 4502 491570833 491570415 8.050000e-148 534.0
38 TraesCS5B01G282200 chr5A 88.889 252 16 7 534 775 606207209 606207458 3.200000e-77 300.0
39 TraesCS5B01G282200 chr5A 86.545 275 27 3 3698 3963 491571117 491570844 1.490000e-75 294.0
40 TraesCS5B01G282200 chr5A 88.482 191 9 4 5275 5458 491569958 491569774 9.200000e-53 219.0
41 TraesCS5B01G282200 chr5A 88.889 180 14 3 5285 5458 489662563 489662384 3.310000e-52 217.0
42 TraesCS5B01G282200 chr5A 88.701 177 17 2 5285 5458 489682691 489682515 4.280000e-51 213.0
43 TraesCS5B01G282200 chr5A 84.513 226 19 12 5034 5244 491570181 491569957 5.540000e-50 209.0
44 TraesCS5B01G282200 chr5A 95.349 43 2 0 405 447 491589799 491589757 9.810000e-08 69.4
45 TraesCS5B01G282200 chr4B 93.056 1080 64 5 1637 2716 31869368 31870436 0.000000e+00 1568.0
46 TraesCS5B01G282200 chr4B 93.304 672 37 3 2704 3370 31870453 31871121 0.000000e+00 985.0
47 TraesCS5B01G282200 chr4B 86.005 886 91 19 779 1641 31866432 31867307 0.000000e+00 918.0
48 TraesCS5B01G282200 chr4B 86.667 615 58 13 4074 4671 31871806 31872413 0.000000e+00 660.0
49 TraesCS5B01G282200 chr4B 92.777 443 32 0 2928 3370 356000152 356000594 4.610000e-180 641.0
50 TraesCS5B01G282200 chr4B 80.815 589 68 24 3368 3927 31871154 31871726 2.350000e-113 420.0
51 TraesCS5B01G282200 chr4B 93.502 277 12 3 4681 4951 598390768 598391044 1.830000e-109 407.0
52 TraesCS5B01G282200 chr4B 82.849 344 42 6 3368 3698 356000627 356000966 5.350000e-75 292.0
53 TraesCS5B01G282200 chr4B 88.095 84 9 1 3369 3451 581609392 581609309 1.250000e-16 99.0
54 TraesCS5B01G282200 chr4A 87.313 938 79 19 2441 3370 45874451 45873546 0.000000e+00 1037.0
55 TraesCS5B01G282200 chr4A 88.759 854 64 16 1585 2436 45875313 45874490 0.000000e+00 1016.0
56 TraesCS5B01G282200 chr4A 89.835 423 35 5 4074 4489 45872920 45872499 2.240000e-148 536.0
57 TraesCS5B01G282200 chr4A 89.250 400 42 1 1064 1462 45875707 45875308 2.940000e-137 499.0
58 TraesCS5B01G282200 chr4A 80.096 623 77 21 3368 3966 45873513 45872914 2.350000e-113 420.0
59 TraesCS5B01G282200 chr4A 89.818 275 19 7 4681 4951 733780325 733780056 1.460000e-90 344.0
60 TraesCS5B01G282200 chr4A 90.551 127 10 2 4555 4680 45872477 45872352 3.380000e-37 167.0
61 TraesCS5B01G282200 chr4A 90.909 44 4 0 404 447 452349745 452349702 5.900000e-05 60.2
62 TraesCS5B01G282200 chr7D 83.140 777 62 34 104 819 104890558 104891326 0.000000e+00 645.0
63 TraesCS5B01G282200 chr7D 97.826 46 1 0 2200 2245 403271014 403271059 4.530000e-11 80.5
64 TraesCS5B01G282200 chr2B 81.308 856 76 45 36 822 552434710 552433870 7.770000e-173 617.0
65 TraesCS5B01G282200 chr2B 80.098 814 80 45 68 815 97940707 97941504 1.040000e-146 531.0
66 TraesCS5B01G282200 chr2B 91.003 289 10 4 4682 4954 17575275 17574987 5.160000e-100 375.0
67 TraesCS5B01G282200 chr7A 82.262 778 66 28 104 819 109342815 109343582 1.680000e-169 606.0
68 TraesCS5B01G282200 chr7A 92.014 288 7 4 4681 4952 704890397 704890110 1.840000e-104 390.0
69 TraesCS5B01G282200 chr2D 80.912 833 65 38 68 815 473101293 473100470 6.130000e-159 571.0
70 TraesCS5B01G282200 chr2D 83.919 541 51 18 300 815 62386641 62387170 8.220000e-133 484.0
71 TraesCS5B01G282200 chr2D 77.596 549 87 14 300 818 15350215 15349673 3.200000e-77 300.0
72 TraesCS5B01G282200 chr2D 86.760 287 13 8 4681 4951 37277496 37277773 4.130000e-76 296.0
73 TraesCS5B01G282200 chr2D 90.698 129 8 2 406 533 62385779 62385654 9.400000e-38 169.0
74 TraesCS5B01G282200 chr2D 82.313 147 17 6 616 753 645307934 645307788 9.600000e-23 119.0
75 TraesCS5B01G282200 chr2A 78.634 805 100 43 68 815 614585115 614584326 8.280000e-128 468.0
76 TraesCS5B01G282200 chr2A 90.217 92 9 0 3964 4055 483604660 483604569 2.670000e-23 121.0
77 TraesCS5B01G282200 chr6B 93.885 278 11 3 4681 4952 713508012 713508289 1.090000e-111 414.0
78 TraesCS5B01G282200 chr6B 83.140 344 41 5 3368 3698 16473208 16472869 1.150000e-76 298.0
79 TraesCS5B01G282200 chr6B 82.470 251 28 4 3460 3698 445510043 445510289 7.170000e-49 206.0
80 TraesCS5B01G282200 chr6B 74.742 388 69 16 460 820 377981636 377982021 4.410000e-31 147.0
81 TraesCS5B01G282200 chr1B 93.885 278 11 3 4681 4952 626492354 626492631 1.090000e-111 414.0
82 TraesCS5B01G282200 chr1B 91.228 285 9 4 4681 4949 524487871 524488155 1.860000e-99 374.0
83 TraesCS5B01G282200 chrUn 92.014 288 7 4 4681 4952 38969577 38969290 1.840000e-104 390.0
84 TraesCS5B01G282200 chrUn 91.667 288 8 4 4681 4952 42261945 42262232 8.580000e-103 385.0
85 TraesCS5B01G282200 chr6D 90.847 295 18 6 4676 4962 50537 50244 2.380000e-103 387.0
86 TraesCS5B01G282200 chr6D 85.623 313 19 7 5151 5458 106952903 106952612 6.870000e-79 305.0
87 TraesCS5B01G282200 chr6D 91.489 94 4 2 2663 2752 65465553 65465460 5.740000e-25 126.0
88 TraesCS5B01G282200 chr3B 90.444 293 11 8 4681 4956 683678767 683678475 2.400000e-98 370.0
89 TraesCS5B01G282200 chr7B 90.278 288 12 7 4681 4952 725691524 725691811 4.020000e-96 363.0
90 TraesCS5B01G282200 chr7B 90.230 174 11 3 5285 5458 456501616 456501783 7.120000e-54 222.0
91 TraesCS5B01G282200 chr7B 91.304 92 6 2 3963 4052 740996148 740996239 2.060000e-24 124.0
92 TraesCS5B01G282200 chr7B 73.198 444 60 32 48 444 745061813 745062244 7.480000e-19 106.0
93 TraesCS5B01G282200 chr6A 86.581 313 21 9 5151 5458 130413996 130413700 5.270000e-85 326.0
94 TraesCS5B01G282200 chr6A 82.927 287 23 14 487 752 584687147 584686866 9.140000e-58 235.0
95 TraesCS5B01G282200 chr6A 97.826 46 1 0 2200 2245 360520929 360520884 4.530000e-11 80.5
96 TraesCS5B01G282200 chr1A 80.577 381 55 6 301 666 509019434 509019058 5.390000e-70 276.0
97 TraesCS5B01G282200 chr1A 90.323 93 8 1 3964 4055 527084021 527083929 2.670000e-23 121.0
98 TraesCS5B01G282200 chr1A 88.660 97 11 0 3956 4052 563757872 563757776 9.600000e-23 119.0
99 TraesCS5B01G282200 chr1D 88.462 104 7 3 2653 2752 450715393 450715291 2.670000e-23 121.0
100 TraesCS5B01G282200 chr3D 73.624 436 55 33 52 444 581730014 581730432 4.470000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G282200 chr5B 467020260 467025717 5457 True 10080.000000 10080 100.000000 1 5458 1 chr5B.!!$R2 5457
1 TraesCS5B01G282200 chr5B 596513332 596514007 675 True 514.000000 514 81.818000 148 771 1 chr5B.!!$R3 623
2 TraesCS5B01G282200 chr5B 596499903 596500658 755 True 251.200000 433 87.915500 55 811 2 chr5B.!!$R4 756
3 TraesCS5B01G282200 chr5D 388592805 388602453 9648 True 2055.333333 5256 87.333333 9 5458 3 chr5D.!!$R8 5449
4 TraesCS5B01G282200 chr5D 353966419 353971577 5158 True 1184.800000 2274 87.560000 850 4626 5 chr5D.!!$R6 3776
5 TraesCS5B01G282200 chr5D 388381656 388385971 4315 True 607.142857 1304 86.931714 847 5458 7 chr5D.!!$R7 4611
6 TraesCS5B01G282200 chr5D 484667794 484668575 781 False 544.000000 544 80.549000 29 771 1 chr5D.!!$F1 742
7 TraesCS5B01G282200 chr5D 484704864 484705672 808 False 503.000000 503 79.462000 29 771 1 chr5D.!!$F2 742
8 TraesCS5B01G282200 chr5D 353954737 353959773 5036 True 496.200000 1040 87.098400 2663 5458 5 chr5D.!!$R5 2795
9 TraesCS5B01G282200 chr5A 491585609 491590256 4647 True 1538.350000 2689 91.747500 52 4650 4 chr5A.!!$R4 4598
10 TraesCS5B01G282200 chr5A 491569774 491573595 3821 True 744.333333 2386 88.500667 932 5458 6 chr5A.!!$R3 4526
11 TraesCS5B01G282200 chr4B 31866432 31872413 5981 False 910.200000 1568 87.969400 779 4671 5 chr4B.!!$F2 3892
12 TraesCS5B01G282200 chr4B 356000152 356000966 814 False 466.500000 641 87.813000 2928 3698 2 chr4B.!!$F3 770
13 TraesCS5B01G282200 chr4A 45872352 45875707 3355 True 612.500000 1037 87.634000 1064 4680 6 chr4A.!!$R3 3616
14 TraesCS5B01G282200 chr7D 104890558 104891326 768 False 645.000000 645 83.140000 104 819 1 chr7D.!!$F1 715
15 TraesCS5B01G282200 chr2B 552433870 552434710 840 True 617.000000 617 81.308000 36 822 1 chr2B.!!$R2 786
16 TraesCS5B01G282200 chr2B 97940707 97941504 797 False 531.000000 531 80.098000 68 815 1 chr2B.!!$F1 747
17 TraesCS5B01G282200 chr7A 109342815 109343582 767 False 606.000000 606 82.262000 104 819 1 chr7A.!!$F1 715
18 TraesCS5B01G282200 chr2D 473100470 473101293 823 True 571.000000 571 80.912000 68 815 1 chr2D.!!$R3 747
19 TraesCS5B01G282200 chr2D 62386641 62387170 529 False 484.000000 484 83.919000 300 815 1 chr2D.!!$F2 515
20 TraesCS5B01G282200 chr2D 15349673 15350215 542 True 300.000000 300 77.596000 300 818 1 chr2D.!!$R1 518
21 TraesCS5B01G282200 chr2A 614584326 614585115 789 True 468.000000 468 78.634000 68 815 1 chr2A.!!$R2 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 2656 1.781786 ATCGTAGATCCACCACTGCT 58.218 50.000 0.00 0.00 45.12 4.24 F
1022 2866 0.747255 GCAGATACCAAGCTCGGAGA 59.253 55.000 9.69 0.00 0.00 3.71 F
2278 6232 0.396695 TTCGAGACCGGGGATAGCTT 60.397 55.000 6.32 0.00 36.24 3.74 F
2628 6687 1.552337 ACAGGTGAGCCACATAGTCTG 59.448 52.381 7.49 7.12 35.86 3.51 F
4306 11131 0.459934 CCGAGCTCTCTTCTTGGCAG 60.460 60.000 12.85 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 5719 0.107459 GCTTCCTCTTACCCTGCCTG 60.107 60.0 0.00 0.0 0.00 4.85 R
2628 6687 1.612676 TCATTCATAGCCATGCCTGC 58.387 50.0 0.00 0.0 31.73 4.85 R
3084 7202 0.397941 TGCAGAGACAGAACCAAGGG 59.602 55.0 0.00 0.0 0.00 3.95 R
4371 11199 0.382515 TTTGTTTTCCCAACCGCGAG 59.617 50.0 8.23 0.0 0.00 5.03 R
5369 15546 1.254026 TCCTCAAGGTTGACGACGAT 58.746 50.0 0.00 0.0 36.34 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.123769 TGCCCAGCAAACACAGCT 60.124 55.556 0.00 0.00 44.62 4.24
278 375 3.997021 CACGTTTGAGGTAGATTTCTGCT 59.003 43.478 0.00 0.00 0.00 4.24
456 586 3.146066 TCAGTTTGGATCCGTTTTCTGG 58.854 45.455 7.39 0.00 0.00 3.86
459 589 4.218417 CAGTTTGGATCCGTTTTCTGGATT 59.782 41.667 7.39 0.00 46.17 3.01
499 660 9.334693 GAGCTGTAATTTTCAGAAATGTTACTG 57.665 33.333 20.99 20.69 35.69 2.74
511 2275 7.171508 TCAGAAATGTTACTGCTTACAACTGAG 59.828 37.037 0.00 0.00 33.11 3.35
551 2337 7.220875 GGTCAAACTCTCAGTTTTTGAATCAAC 59.779 37.037 0.00 0.00 45.38 3.18
751 2582 8.408043 TGATCAATTTCTGTTGTTCTATTGGT 57.592 30.769 0.00 0.00 31.95 3.67
758 2589 4.941263 TCTGTTGTTCTATTGGTATGCCAC 59.059 41.667 0.24 0.00 46.01 5.01
819 2656 1.781786 ATCGTAGATCCACCACTGCT 58.218 50.000 0.00 0.00 45.12 4.24
874 2711 9.407514 CAGTGTATTTTTGTTTTCGATTTGTTG 57.592 29.630 0.00 0.00 0.00 3.33
889 2729 8.322906 TCGATTTGTTGACTTAAGTTGATGAT 57.677 30.769 10.02 0.77 0.00 2.45
910 2750 6.629128 TGATTTTCGTTACCAATTCATGCAT 58.371 32.000 0.00 0.00 0.00 3.96
923 2763 9.480053 ACCAATTCATGCATTATTATTTGTAGC 57.520 29.630 0.00 0.00 0.00 3.58
957 2797 7.356540 TGTTTTATGTACTTTGTTGGATCGTG 58.643 34.615 0.00 0.00 0.00 4.35
964 2804 2.198827 TTGTTGGATCGTGGAGCATT 57.801 45.000 0.00 0.00 0.00 3.56
974 2814 5.447818 GGATCGTGGAGCATTTGAGTTTAAG 60.448 44.000 0.00 0.00 0.00 1.85
982 2826 7.041372 TGGAGCATTTGAGTTTAAGTTCTACAC 60.041 37.037 0.00 0.00 0.00 2.90
1022 2866 0.747255 GCAGATACCAAGCTCGGAGA 59.253 55.000 9.69 0.00 0.00 3.71
1203 3056 0.901114 TCAAGGTACGCCTAGGTGCA 60.901 55.000 22.51 6.71 46.33 4.57
1226 3080 1.857348 CCCCTCCCCCACCTTTTCT 60.857 63.158 0.00 0.00 0.00 2.52
1229 3083 1.435346 CCTCCCCCACCTTTTCTGGT 61.435 60.000 0.00 0.00 41.77 4.00
1270 3135 3.911964 GCGTGTGATTTGTATGTGTTTCC 59.088 43.478 0.00 0.00 0.00 3.13
1277 3142 5.541868 TGATTTGTATGTGTTTCCATTGGGT 59.458 36.000 2.09 0.00 34.93 4.51
1429 3294 1.604593 GCATCCCTGGTGCTGTTGT 60.605 57.895 2.26 0.00 39.45 3.32
1484 3349 3.433709 TGTGTGTGTCAATCGCAAAAAG 58.566 40.909 0.00 0.00 38.33 2.27
1553 3423 2.806945 TCCTTCATGTTGGGGACATC 57.193 50.000 6.84 0.00 45.88 3.06
1917 5860 5.996513 CAGACTATCCTATTGCAGCTGAATT 59.003 40.000 20.43 6.04 0.00 2.17
1945 5888 9.550406 AATATTTTGGTGGAATCATAAATGCAG 57.450 29.630 0.00 0.00 0.00 4.41
1947 5890 7.473735 TTTTGGTGGAATCATAAATGCAGTA 57.526 32.000 0.00 0.00 0.00 2.74
1950 5893 6.604171 TGGTGGAATCATAAATGCAGTATCT 58.396 36.000 0.00 0.00 0.00 1.98
2123 6076 3.700539 TGTGATTATCCCTGCATGTTTGG 59.299 43.478 0.00 0.00 0.00 3.28
2233 6187 2.086054 ACTTCTGGATGAGTCGTTGC 57.914 50.000 0.00 0.00 0.00 4.17
2245 6199 5.128992 TGAGTCGTTGCAGTTTACAGATA 57.871 39.130 0.00 0.00 0.00 1.98
2270 6224 0.530744 TGATCAACTTCGAGACCGGG 59.469 55.000 6.32 0.00 36.24 5.73
2278 6232 0.396695 TTCGAGACCGGGGATAGCTT 60.397 55.000 6.32 0.00 36.24 3.74
2337 6291 2.754552 TCTGTATTTTGTGCAGATGGCC 59.245 45.455 0.00 0.00 43.46 5.36
2372 6326 3.956744 AGGGAGCAGTGTATCCTTTTTC 58.043 45.455 14.01 0.86 35.80 2.29
2539 6598 4.457257 AGTCAGATCAGCTTTTTACTTGCC 59.543 41.667 0.00 0.00 0.00 4.52
2572 6631 2.872245 TGTAGAACTTTGCACTGCAGTC 59.128 45.455 18.64 12.59 40.61 3.51
2628 6687 1.552337 ACAGGTGAGCCACATAGTCTG 59.448 52.381 7.49 7.12 35.86 3.51
2651 6710 2.561419 AGGCATGGCTATGAATGATTGC 59.439 45.455 22.00 0.00 36.36 3.56
2681 6741 7.748691 TTAAGTTCAGTAAATAACCACCCAC 57.251 36.000 0.00 0.00 0.00 4.61
2866 6979 5.300286 GCTTGCCCTCTGATATTATGTTTGT 59.700 40.000 0.00 0.00 0.00 2.83
2992 7107 3.969553 TCCACACTAGCACTCTGTATCT 58.030 45.455 0.00 0.00 0.00 1.98
2997 7112 5.347093 CACACTAGCACTCTGTATCTTTGTG 59.653 44.000 0.00 0.00 0.00 3.33
3044 7162 5.565259 CGTAAGATCATGCTTTCACACAAAC 59.435 40.000 0.00 0.00 43.02 2.93
3075 7193 1.605058 GGACCTTGCAGCTACCTCGA 61.605 60.000 0.00 0.00 0.00 4.04
3084 7202 3.005472 TGCAGCTACCTCGATACATAACC 59.995 47.826 0.00 0.00 0.00 2.85
3244 7362 2.172293 ACCCAAGATGAGGATCTGAAGC 59.828 50.000 0.00 0.00 39.04 3.86
3246 7364 2.172082 CCAAGATGAGGATCTGAAGCCA 59.828 50.000 0.00 0.00 39.04 4.75
3279 7400 7.215085 CAGATTCATCAATCCAGTATGAGACA 58.785 38.462 0.00 0.00 39.58 3.41
3357 7485 1.953686 ACATTTGGAGTTCACGGTTGG 59.046 47.619 0.00 0.00 0.00 3.77
3388 9994 5.149273 GCAATCGCATACAATTGTATCCTG 58.851 41.667 24.99 17.90 39.06 3.86
3512 10130 8.084684 TGATACGGAATGAGTATGAATGAAGAG 58.915 37.037 0.00 0.00 35.19 2.85
3562 10200 9.722184 CATTGACTATCTGGAAGTTATGATGAT 57.278 33.333 0.00 0.00 33.76 2.45
3650 10298 5.245531 TCAAGAGTATGCGTCTGGAATTTT 58.754 37.500 0.00 0.00 0.00 1.82
3709 10413 8.138928 TGATATCTTGGTATCAGATAACCTGG 57.861 38.462 2.83 0.00 43.12 4.45
3910 10635 2.418692 TGCCAAAATGCTGCATTTCTG 58.581 42.857 33.30 28.92 42.32 3.02
3954 10746 5.925509 TGTACCTAATAGAACAGGAATGCC 58.074 41.667 0.00 0.00 35.76 4.40
4132 10929 7.995488 AGGTTCTTATAAGTTCTAATGCTGCAT 59.005 33.333 9.81 9.81 0.00 3.96
4290 11115 2.161410 CCAAATGATCAAAACGCTCCGA 59.839 45.455 0.00 0.00 0.00 4.55
4306 11131 0.459934 CCGAGCTCTCTTCTTGGCAG 60.460 60.000 12.85 0.00 0.00 4.85
4371 11199 1.472376 CGAGGAAGAGAGTGGCATTCC 60.472 57.143 6.36 7.52 41.29 3.01
4379 11207 2.746277 GTGGCATTCCTCGCGGTT 60.746 61.111 6.13 0.00 0.00 4.44
4418 11252 2.069273 GTGACACCTCCTGAAACATCG 58.931 52.381 0.00 0.00 0.00 3.84
4421 11258 1.971357 ACACCTCCTGAAACATCGTCT 59.029 47.619 0.00 0.00 0.00 4.18
4422 11259 3.162666 ACACCTCCTGAAACATCGTCTA 58.837 45.455 0.00 0.00 0.00 2.59
4448 11285 1.147817 ACCAAGAAGCAAAGGGTGGAT 59.852 47.619 0.00 0.00 0.00 3.41
4518 11526 6.108687 AGAACAACTGATAATGATGAAGCGA 58.891 36.000 0.00 0.00 0.00 4.93
4519 11527 6.595326 AGAACAACTGATAATGATGAAGCGAA 59.405 34.615 0.00 0.00 0.00 4.70
4533 11542 5.499139 TGAAGCGAAAATAAAGGGCTATG 57.501 39.130 0.00 0.00 32.82 2.23
4537 11546 4.342092 AGCGAAAATAAAGGGCTATGCATT 59.658 37.500 3.54 0.00 31.03 3.56
4603 11616 3.064545 GCATTCTTACTGCATCTCGCTTT 59.935 43.478 0.00 0.00 43.06 3.51
4605 11618 3.592898 TCTTACTGCATCTCGCTTTGA 57.407 42.857 0.00 0.00 43.06 2.69
4606 11619 4.128925 TCTTACTGCATCTCGCTTTGAT 57.871 40.909 0.00 0.00 43.06 2.57
4607 11620 5.262588 TCTTACTGCATCTCGCTTTGATA 57.737 39.130 0.00 0.00 43.06 2.15
4618 11635 5.724328 TCTCGCTTTGATACAAGAGATTGT 58.276 37.500 0.00 0.00 38.85 2.71
4659 11676 5.635280 CACCACGTGACATATCCAGATAATC 59.365 44.000 19.30 0.00 35.23 1.75
4680 11697 2.678336 CGATGAGGTTTAGGCCAAGAAC 59.322 50.000 5.01 6.43 0.00 3.01
4681 11698 3.686016 GATGAGGTTTAGGCCAAGAACA 58.314 45.455 5.01 0.00 0.00 3.18
4683 11700 3.420893 TGAGGTTTAGGCCAAGAACATG 58.579 45.455 5.01 0.00 0.00 3.21
4684 11701 2.755103 GAGGTTTAGGCCAAGAACATGG 59.245 50.000 5.01 0.00 43.70 3.66
4685 11702 2.110011 AGGTTTAGGCCAAGAACATGGT 59.890 45.455 5.01 0.00 42.75 3.55
4686 11703 2.897326 GGTTTAGGCCAAGAACATGGTT 59.103 45.455 5.01 0.00 42.75 3.67
4688 11705 4.202315 GGTTTAGGCCAAGAACATGGTTTT 60.202 41.667 5.01 0.00 42.75 2.43
4690 11707 2.676748 AGGCCAAGAACATGGTTTTCA 58.323 42.857 5.01 0.00 42.75 2.69
4691 11708 2.365293 AGGCCAAGAACATGGTTTTCAC 59.635 45.455 5.01 0.00 42.75 3.18
4692 11709 2.365293 GGCCAAGAACATGGTTTTCACT 59.635 45.455 0.00 0.00 42.75 3.41
4694 11711 4.051237 GCCAAGAACATGGTTTTCACTTC 58.949 43.478 0.00 0.00 42.75 3.01
4697 11714 5.284079 CAAGAACATGGTTTTCACTTCCAG 58.716 41.667 0.00 0.00 34.62 3.86
4698 11715 4.536765 AGAACATGGTTTTCACTTCCAGT 58.463 39.130 0.00 0.00 34.62 4.00
4699 11716 9.962710 CCAAGAACATGGTTTTCACTTCCAGTG 62.963 44.444 0.00 0.00 40.32 3.66
4722 11739 7.806409 TGAGATTTCACTGAAATTCACTGAA 57.194 32.000 16.48 12.02 41.56 3.02
4723 11740 8.400184 TGAGATTTCACTGAAATTCACTGAAT 57.600 30.769 16.48 0.00 41.56 2.57
4724 11741 8.853126 TGAGATTTCACTGAAATTCACTGAATT 58.147 29.630 16.48 10.71 41.56 2.17
4780 11797 8.939201 TGTTTCAGTCAAAATATTTCAGCAAA 57.061 26.923 0.10 0.00 0.00 3.68
4781 11798 9.545105 TGTTTCAGTCAAAATATTTCAGCAAAT 57.455 25.926 0.10 0.00 36.18 2.32
4784 11801 9.761504 TTCAGTCAAAATATTTCAGCAAATTCA 57.238 25.926 0.10 0.00 33.95 2.57
4785 11802 9.414295 TCAGTCAAAATATTTCAGCAAATTCAG 57.586 29.630 0.10 0.00 33.95 3.02
4786 11803 9.199982 CAGTCAAAATATTTCAGCAAATTCAGT 57.800 29.630 0.10 0.00 33.95 3.41
4794 11811 7.744087 ATTTCAGCAAATTCAGTAGTACACA 57.256 32.000 2.52 0.00 0.00 3.72
4795 11812 6.785488 TTCAGCAAATTCAGTAGTACACAG 57.215 37.500 2.52 0.00 0.00 3.66
4796 11813 5.237815 TCAGCAAATTCAGTAGTACACAGG 58.762 41.667 2.52 0.00 0.00 4.00
4797 11814 5.011635 TCAGCAAATTCAGTAGTACACAGGA 59.988 40.000 2.52 0.00 0.00 3.86
4798 11815 5.700832 CAGCAAATTCAGTAGTACACAGGAA 59.299 40.000 2.52 1.65 0.00 3.36
4799 11816 6.204688 CAGCAAATTCAGTAGTACACAGGAAA 59.795 38.462 2.52 0.00 0.00 3.13
4800 11817 6.942576 AGCAAATTCAGTAGTACACAGGAAAT 59.057 34.615 2.52 0.00 0.00 2.17
4801 11818 7.119846 AGCAAATTCAGTAGTACACAGGAAATC 59.880 37.037 2.52 0.00 0.00 2.17
4802 11819 7.094805 GCAAATTCAGTAGTACACAGGAAATCA 60.095 37.037 2.52 0.00 0.00 2.57
4803 11820 8.783093 CAAATTCAGTAGTACACAGGAAATCAA 58.217 33.333 2.52 0.00 0.00 2.57
4804 11821 8.918202 AATTCAGTAGTACACAGGAAATCAAA 57.082 30.769 2.52 0.00 0.00 2.69
4805 11822 9.520515 AATTCAGTAGTACACAGGAAATCAAAT 57.479 29.630 2.52 0.00 0.00 2.32
4869 11886 9.883142 TTAAATTCAAATGAATATTTCGGCCTT 57.117 25.926 8.94 0.41 43.41 4.35
4870 11887 8.791327 AAATTCAAATGAATATTTCGGCCTTT 57.209 26.923 8.94 0.00 43.41 3.11
4871 11888 8.791327 AATTCAAATGAATATTTCGGCCTTTT 57.209 26.923 8.94 0.00 43.41 2.27
4872 11889 7.593875 TTCAAATGAATATTTCGGCCTTTTG 57.406 32.000 0.00 0.00 34.34 2.44
4873 11890 6.105333 TCAAATGAATATTTCGGCCTTTTGG 58.895 36.000 0.00 0.00 37.22 3.28
4889 11906 5.600696 CCTTTTGGCTGAAATGTAAACAGT 58.399 37.500 0.00 0.00 34.60 3.55
4890 11907 5.463061 CCTTTTGGCTGAAATGTAAACAGTG 59.537 40.000 0.00 0.00 34.60 3.66
4891 11908 5.843673 TTTGGCTGAAATGTAAACAGTGA 57.156 34.783 0.00 0.00 34.60 3.41
4892 11909 5.843673 TTGGCTGAAATGTAAACAGTGAA 57.156 34.783 0.00 0.00 34.60 3.18
4893 11910 5.843673 TGGCTGAAATGTAAACAGTGAAA 57.156 34.783 0.00 0.00 34.60 2.69
4894 11911 6.214191 TGGCTGAAATGTAAACAGTGAAAA 57.786 33.333 0.00 0.00 34.60 2.29
4895 11912 6.815089 TGGCTGAAATGTAAACAGTGAAAAT 58.185 32.000 0.00 0.00 34.60 1.82
4896 11913 7.271511 TGGCTGAAATGTAAACAGTGAAAATT 58.728 30.769 0.00 0.00 34.60 1.82
4897 11914 7.768120 TGGCTGAAATGTAAACAGTGAAAATTT 59.232 29.630 0.00 0.00 34.60 1.82
4898 11915 8.275632 GGCTGAAATGTAAACAGTGAAAATTTC 58.724 33.333 0.00 0.00 34.61 2.17
4899 11916 8.816144 GCTGAAATGTAAACAGTGAAAATTTCA 58.184 29.630 4.03 4.03 39.15 2.69
4901 11918 9.868277 TGAAATGTAAACAGTGAAAATTTCAGT 57.132 25.926 8.88 9.51 43.88 3.41
4912 11929 8.638685 AGTGAAAATTTCAGTGATTTCAGTTG 57.361 30.769 16.89 0.00 40.64 3.16
4913 11930 7.707893 AGTGAAAATTTCAGTGATTTCAGTTGG 59.292 33.333 16.89 0.00 40.64 3.77
4914 11931 7.492344 GTGAAAATTTCAGTGATTTCAGTTGGT 59.508 33.333 16.89 0.00 41.08 3.67
4915 11932 7.492020 TGAAAATTTCAGTGATTTCAGTTGGTG 59.508 33.333 13.80 0.00 36.99 4.17
4916 11933 3.988379 TTCAGTGATTTCAGTTGGTGC 57.012 42.857 0.00 0.00 0.00 5.01
4917 11934 3.213206 TCAGTGATTTCAGTTGGTGCT 57.787 42.857 0.00 0.00 0.00 4.40
4918 11935 2.880268 TCAGTGATTTCAGTTGGTGCTG 59.120 45.455 0.00 0.00 37.81 4.41
4919 11936 2.880268 CAGTGATTTCAGTTGGTGCTGA 59.120 45.455 0.00 0.00 43.03 4.26
4927 11944 4.734398 TCAGTTGGTGCTGAAATTTTGT 57.266 36.364 0.00 0.00 41.93 2.83
4928 11945 5.083533 TCAGTTGGTGCTGAAATTTTGTT 57.916 34.783 0.00 0.00 41.93 2.83
4929 11946 4.869297 TCAGTTGGTGCTGAAATTTTGTTG 59.131 37.500 0.00 0.00 41.93 3.33
4930 11947 4.869297 CAGTTGGTGCTGAAATTTTGTTGA 59.131 37.500 0.00 0.00 38.70 3.18
4931 11948 5.350914 CAGTTGGTGCTGAAATTTTGTTGAA 59.649 36.000 0.00 0.00 38.70 2.69
4932 11949 5.936956 AGTTGGTGCTGAAATTTTGTTGAAA 59.063 32.000 0.00 0.00 0.00 2.69
4933 11950 5.793026 TGGTGCTGAAATTTTGTTGAAAC 57.207 34.783 0.00 0.00 0.00 2.78
4934 11951 5.486526 TGGTGCTGAAATTTTGTTGAAACT 58.513 33.333 0.00 0.00 0.00 2.66
4935 11952 5.350914 TGGTGCTGAAATTTTGTTGAAACTG 59.649 36.000 0.00 0.00 0.00 3.16
4936 11953 5.580297 GGTGCTGAAATTTTGTTGAAACTGA 59.420 36.000 0.00 0.00 0.00 3.41
4937 11954 6.091986 GGTGCTGAAATTTTGTTGAAACTGAA 59.908 34.615 0.00 0.00 0.00 3.02
4938 11955 7.360776 GGTGCTGAAATTTTGTTGAAACTGAAA 60.361 33.333 0.00 0.00 0.00 2.69
4939 11956 8.177013 GTGCTGAAATTTTGTTGAAACTGAAAT 58.823 29.630 0.00 0.00 31.55 2.17
4940 11957 8.728833 TGCTGAAATTTTGTTGAAACTGAAATT 58.271 25.926 11.56 11.56 37.16 1.82
4941 11958 9.002080 GCTGAAATTTTGTTGAAACTGAAATTG 57.998 29.630 15.20 8.85 36.47 2.32
4947 11964 9.838975 ATTTTGTTGAAACTGAAATTGAAAACC 57.161 25.926 0.00 0.00 0.00 3.27
4948 11965 7.969536 TTGTTGAAACTGAAATTGAAAACCA 57.030 28.000 0.00 0.00 0.00 3.67
4949 11966 8.558973 TTGTTGAAACTGAAATTGAAAACCAT 57.441 26.923 0.00 0.00 0.00 3.55
4950 11967 7.972527 TGTTGAAACTGAAATTGAAAACCATG 58.027 30.769 0.00 0.00 0.00 3.66
4951 11968 7.065563 TGTTGAAACTGAAATTGAAAACCATGG 59.934 33.333 11.19 11.19 0.00 3.66
4952 11969 5.526846 TGAAACTGAAATTGAAAACCATGGC 59.473 36.000 13.04 0.00 0.00 4.40
4953 11970 4.006780 ACTGAAATTGAAAACCATGGCC 57.993 40.909 13.04 0.00 0.00 5.36
4954 11971 3.390639 ACTGAAATTGAAAACCATGGCCA 59.609 39.130 13.04 8.56 0.00 5.36
4955 11972 4.141528 ACTGAAATTGAAAACCATGGCCAA 60.142 37.500 10.96 11.46 0.00 4.52
4956 11973 4.387598 TGAAATTGAAAACCATGGCCAAG 58.612 39.130 10.96 4.76 0.00 3.61
4957 11974 4.102210 TGAAATTGAAAACCATGGCCAAGA 59.898 37.500 10.96 0.00 0.00 3.02
4958 11975 4.703379 AATTGAAAACCATGGCCAAGAA 57.297 36.364 10.96 0.00 0.00 2.52
4971 11988 1.497991 CCAAGAAGCAAACGTCTCGA 58.502 50.000 0.00 0.00 33.10 4.04
4996 12017 4.218200 CGCTATGGATCATTATTTGGCCAA 59.782 41.667 16.05 16.05 35.03 4.52
4998 12019 6.572898 CGCTATGGATCATTATTTGGCCAAAT 60.573 38.462 38.37 38.37 42.95 2.32
5003 12027 5.237779 GGATCATTATTTGGCCAAATTGCAG 59.762 40.000 40.69 28.29 40.99 4.41
5010 12034 0.885196 GGCCAAATTGCAGTCCGTAA 59.115 50.000 0.00 0.00 0.00 3.18
5030 12057 7.009815 TCCGTAAAATCGATCATGTACTTTCAC 59.990 37.037 0.00 0.00 0.00 3.18
5044 12106 3.470709 ACTTTCACATGTGGTCAGACAG 58.529 45.455 25.16 10.53 0.00 3.51
5054 12116 1.230324 GGTCAGACAGCCACAACTTC 58.770 55.000 2.17 0.00 0.00 3.01
5087 14951 1.343142 TGCTTACACGCCTTCTCTGAA 59.657 47.619 0.00 0.00 0.00 3.02
5100 14964 4.565236 CCTTCTCTGAAGCCTCAAGAACAT 60.565 45.833 2.08 0.00 31.36 2.71
5127 14991 6.701340 TCAAGTGTCAGTTATGTTGCTAGAT 58.299 36.000 0.00 0.00 0.00 1.98
5134 14998 8.478066 TGTCAGTTATGTTGCTAGATAAGATGT 58.522 33.333 0.00 0.00 0.00 3.06
5143 15033 7.119699 TGTTGCTAGATAAGATGTCAACCAAAG 59.880 37.037 0.00 0.00 33.48 2.77
5149 15039 3.996150 AGATGTCAACCAAAGCAGTTG 57.004 42.857 0.00 0.00 44.80 3.16
5181 15083 5.048013 TCACTAATTGAGCTGAGACTCGAAA 60.048 40.000 0.00 0.00 39.68 3.46
5254 15253 9.998106 AAGAGAACTATTACAAGCTTTCTTACA 57.002 29.630 0.00 0.00 0.00 2.41
5269 15268 2.165641 TCTTACAAGCCACGACGATCAT 59.834 45.455 0.00 0.00 0.00 2.45
5369 15546 1.285950 CTGCTTCAGGTCGTCGTCA 59.714 57.895 0.00 0.00 0.00 4.35
5372 15549 1.134530 GCTTCAGGTCGTCGTCATCG 61.135 60.000 0.00 0.00 38.55 3.84
5373 15550 0.168348 CTTCAGGTCGTCGTCATCGT 59.832 55.000 0.00 0.00 38.33 3.73
5374 15551 0.167470 TTCAGGTCGTCGTCATCGTC 59.833 55.000 0.00 0.00 38.33 4.20
5418 15595 0.655733 CCGTCGCAACAAGTTGTTCT 59.344 50.000 18.34 0.00 38.77 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.829272 CTGTGTTTGCTGGGCACGC 62.829 63.158 0.00 0.00 38.71 5.34
96 103 3.427598 GAGTTAGGGCGGCGAGGTC 62.428 68.421 12.98 0.00 0.00 3.85
97 104 3.459063 GAGTTAGGGCGGCGAGGT 61.459 66.667 12.98 0.00 0.00 3.85
98 105 4.570663 CGAGTTAGGGCGGCGAGG 62.571 72.222 12.98 0.00 0.00 4.63
384 506 2.835764 TGGGCAGAATTCCGTAGTAAGT 59.164 45.455 0.65 0.00 0.00 2.24
385 507 3.458189 CTGGGCAGAATTCCGTAGTAAG 58.542 50.000 0.65 0.00 0.00 2.34
386 508 2.169769 CCTGGGCAGAATTCCGTAGTAA 59.830 50.000 0.65 0.00 0.00 2.24
456 586 2.950309 AGCTCAAGATGCCACATGAATC 59.050 45.455 0.00 0.00 0.00 2.52
459 589 1.003928 ACAGCTCAAGATGCCACATGA 59.996 47.619 0.00 0.00 34.24 3.07
551 2337 9.628746 TGTTCTTCAATATGACAATGACATTTG 57.371 29.630 3.30 8.35 0.00 2.32
771 2603 6.449830 AACAGGGTAGTCCACTCTAAAAAT 57.550 37.500 0.00 0.00 34.94 1.82
777 2613 2.972348 TGAAACAGGGTAGTCCACTCT 58.028 47.619 0.00 0.00 39.15 3.24
847 2684 8.125728 ACAAATCGAAAACAAAAATACACTGG 57.874 30.769 0.00 0.00 0.00 4.00
874 2711 8.500773 TGGTAACGAAAATCATCAACTTAAGTC 58.499 33.333 8.95 0.00 42.51 3.01
889 2729 8.994429 AATAATGCATGAATTGGTAACGAAAA 57.006 26.923 9.37 0.00 42.51 2.29
928 2768 9.341899 GATCCAACAAAGTACATAAAACATGAC 57.658 33.333 0.00 0.00 0.00 3.06
957 2797 7.298854 GTGTAGAACTTAAACTCAAATGCTCC 58.701 38.462 0.00 0.00 0.00 4.70
964 2804 6.183361 TGGATGGGTGTAGAACTTAAACTCAA 60.183 38.462 0.00 0.00 0.00 3.02
974 2814 1.405121 GGTCGTGGATGGGTGTAGAAC 60.405 57.143 0.00 0.00 0.00 3.01
982 2826 1.069204 CATGTCTAGGTCGTGGATGGG 59.931 57.143 0.00 0.00 0.00 4.00
1035 2879 2.932234 CGAACCCTCCTGACGCTGT 61.932 63.158 0.00 0.00 0.00 4.40
1119 2963 0.958876 TGTAGACAAGGCGCTCGAGA 60.959 55.000 18.75 0.00 0.00 4.04
1226 3080 2.142761 AGTGCAGAGCCACTCACCA 61.143 57.895 0.00 0.00 42.10 4.17
1229 3083 0.036671 CATCAGTGCAGAGCCACTCA 60.037 55.000 0.00 0.00 43.85 3.41
1249 3114 5.102020 TGGAAACACATACAAATCACACG 57.898 39.130 0.00 0.00 33.40 4.49
1270 3135 2.749865 CGCACCTACGCACCCAATG 61.750 63.158 0.00 0.00 0.00 2.82
1317 3182 1.667724 GTTGATGACCTCCGCAAGATG 59.332 52.381 0.00 0.00 43.02 2.90
1429 3294 5.827797 ACAAAGATTGTTTTACAGAGGAGCA 59.172 36.000 0.00 0.00 42.22 4.26
1468 3333 8.487176 ACATAATTTTCTTTTTGCGATTGACAC 58.513 29.630 0.00 0.00 0.00 3.67
1553 3423 5.123820 ACAAATATCATCACAGGACCAAACG 59.876 40.000 0.00 0.00 0.00 3.60
1613 3485 8.942338 AAGCTTACAGTCATCGTGAATAAATA 57.058 30.769 0.00 0.00 0.00 1.40
1624 3497 6.801575 ACTTCTAGCTAAGCTTACAGTCATC 58.198 40.000 0.86 0.00 40.44 2.92
1657 5596 6.493116 CCAAGAAATTAAGCACTGCTCATAG 58.507 40.000 3.40 0.00 38.25 2.23
1662 5601 2.892852 TGCCAAGAAATTAAGCACTGCT 59.107 40.909 0.00 0.00 42.56 4.24
1777 5719 0.107459 GCTTCCTCTTACCCTGCCTG 60.107 60.000 0.00 0.00 0.00 4.85
1895 5838 7.969536 TTAATTCAGCTGCAATAGGATAGTC 57.030 36.000 9.47 0.00 0.00 2.59
1945 5888 9.757227 AAAGTTATGCTCTATCAACAGAGATAC 57.243 33.333 4.35 0.00 44.11 2.24
1947 5890 9.107177 CAAAAGTTATGCTCTATCAACAGAGAT 57.893 33.333 4.35 0.00 44.11 2.75
1950 5893 8.621532 AACAAAAGTTATGCTCTATCAACAGA 57.378 30.769 0.00 0.00 0.00 3.41
2089 6036 4.458989 GGGATAATCACAACACTTTGCTGA 59.541 41.667 0.00 0.00 36.00 4.26
2197 6151 7.436933 TCCAGAAGTATGTATCATGCAGTTAG 58.563 38.462 0.00 0.00 0.00 2.34
2245 6199 4.627467 CGGTCTCGAAGTTGATCAAGAATT 59.373 41.667 8.80 4.29 39.00 2.17
2270 6224 3.756434 TGTGCAAACCAAGTAAGCTATCC 59.244 43.478 0.00 0.00 0.00 2.59
2278 6232 3.411446 CCTCTGATGTGCAAACCAAGTA 58.589 45.455 0.00 0.00 0.00 2.24
2337 6291 2.280628 GCTCCCTTCATAACAGGTTCG 58.719 52.381 0.00 0.00 0.00 3.95
2372 6326 9.528018 TGCTAAGAAAATAACAGAACCAAAAAG 57.472 29.630 0.00 0.00 0.00 2.27
2428 6385 2.071778 TTCCTTTTCAGTGGCAAGCT 57.928 45.000 0.00 0.00 0.00 3.74
2628 6687 1.612676 TCATTCATAGCCATGCCTGC 58.387 50.000 0.00 0.00 31.73 4.85
2651 6710 9.916397 GTGGTTATTTACTGAACTTAATCGATG 57.084 33.333 0.00 0.00 0.00 3.84
2681 6741 7.483307 ACCAAGTTAGTTGCTGCATAAATATG 58.517 34.615 1.84 0.98 34.45 1.78
2804 6897 5.702670 TCTGTGCATAAAGAGACAAAGAAGG 59.297 40.000 0.00 0.00 0.00 3.46
2897 7010 4.119442 TCCGTAAGATCAGTAACCTTGC 57.881 45.455 0.00 0.00 43.02 4.01
2997 7112 7.370383 ACGCAATACATATTTTTCCATGATCC 58.630 34.615 0.00 0.00 0.00 3.36
3044 7162 1.893808 AAGGTCCAGCAACTGCACG 60.894 57.895 4.22 0.00 45.16 5.34
3084 7202 0.397941 TGCAGAGACAGAACCAAGGG 59.602 55.000 0.00 0.00 0.00 3.95
3244 7362 2.927028 TGATGAATCTGGAGTGCATGG 58.073 47.619 0.00 0.00 0.00 3.66
3246 7364 4.142790 GGATTGATGAATCTGGAGTGCAT 58.857 43.478 4.85 0.00 38.48 3.96
3279 7400 4.772886 ACCTTCACTAACAAGTCCAAGT 57.227 40.909 0.00 0.00 0.00 3.16
3512 10130 0.398318 AGCACCACCAAGACTCTTCC 59.602 55.000 0.00 0.00 0.00 3.46
3569 10207 9.685276 ACATGGAGATGTTATCAGAAAACATAA 57.315 29.630 0.00 0.00 45.24 1.90
3709 10413 2.780065 TCATTGCAACAACTGTCAGC 57.220 45.000 0.00 1.50 0.00 4.26
3767 10471 3.073798 TCTTCCAGTAAGCACAATCCCAA 59.926 43.478 0.00 0.00 34.97 4.12
3830 10554 9.306777 ACCCCAAAATATGTTTTAAAATTGCAT 57.693 25.926 3.52 5.92 35.83 3.96
3910 10635 9.072294 GGTACAGCACAAACAATTGATATTAAC 57.928 33.333 13.59 0.00 38.94 2.01
3970 10762 9.774742 CGATTTTAAATTTCTTTACAGAGGGAG 57.225 33.333 0.00 0.00 0.00 4.30
4049 10841 5.426833 ACTCCTGTTCTATTAATGGAGCACT 59.573 40.000 13.17 0.00 43.34 4.40
4052 10844 9.998106 TTAATACTCCTGTTCTATTAATGGAGC 57.002 33.333 14.25 11.63 43.34 4.70
4081 10873 9.573133 CTTTTCCAAAGTATGACATGATAAACC 57.427 33.333 0.00 0.00 0.00 3.27
4132 10929 8.522830 GGTTTTCCATCTCTGATATGTCAAAAA 58.477 33.333 9.65 7.38 40.31 1.94
4202 11027 1.398390 GCTTTATCTGGTTGGTCAGCG 59.602 52.381 0.00 0.00 34.91 5.18
4290 11115 1.299321 GCCTGCCAAGAAGAGAGCT 59.701 57.895 0.00 0.00 0.00 4.09
4331 11156 4.461198 TCGTATCAGGCTTGACATCTCTA 58.539 43.478 0.00 0.00 35.83 2.43
4371 11199 0.382515 TTTGTTTTCCCAACCGCGAG 59.617 50.000 8.23 0.00 0.00 5.03
4379 11207 2.164624 CACGGTGACTTTTGTTTTCCCA 59.835 45.455 0.74 0.00 0.00 4.37
4406 11234 6.604396 TGGTAACTATAGACGATGTTTCAGGA 59.396 38.462 6.78 0.00 37.61 3.86
4418 11252 6.539103 CCCTTTGCTTCTTGGTAACTATAGAC 59.461 42.308 6.78 0.00 37.61 2.59
4421 11258 6.177610 CACCCTTTGCTTCTTGGTAACTATA 58.822 40.000 0.00 0.00 37.61 1.31
4422 11259 5.010282 CACCCTTTGCTTCTTGGTAACTAT 58.990 41.667 0.00 0.00 37.61 2.12
4448 11285 2.036604 TGCAGTGGTCAGTCAAATCGTA 59.963 45.455 0.00 0.00 0.00 3.43
4502 11510 8.352201 CCCTTTATTTTCGCTTCATCATTATCA 58.648 33.333 0.00 0.00 0.00 2.15
4504 11512 7.014615 AGCCCTTTATTTTCGCTTCATCATTAT 59.985 33.333 0.00 0.00 0.00 1.28
4533 11542 7.412346 CGATCATCTAGTAAGGTATGCAAATGC 60.412 40.741 0.00 0.00 42.50 3.56
4537 11546 6.894339 TCGATCATCTAGTAAGGTATGCAA 57.106 37.500 0.00 0.00 0.00 4.08
4542 11551 7.818997 AACACATCGATCATCTAGTAAGGTA 57.181 36.000 0.00 0.00 0.00 3.08
4549 11561 7.078228 TCAACGATAACACATCGATCATCTAG 58.922 38.462 13.11 0.00 43.59 2.43
4603 11616 9.130661 TGGAAAAAGAAACAATCTCTTGTATCA 57.869 29.630 0.00 0.00 44.83 2.15
4605 11618 8.360390 GGTGGAAAAAGAAACAATCTCTTGTAT 58.640 33.333 0.00 0.00 44.83 2.29
4606 11619 7.340743 TGGTGGAAAAAGAAACAATCTCTTGTA 59.659 33.333 0.00 0.00 44.83 2.41
4618 11635 2.834549 TGGTGCTTGGTGGAAAAAGAAA 59.165 40.909 0.00 0.00 0.00 2.52
4659 11676 2.678336 GTTCTTGGCCTAAACCTCATCG 59.322 50.000 3.32 0.00 0.00 3.84
4754 11771 9.545105 TTTGCTGAAATATTTTGACTGAAACAT 57.455 25.926 1.43 0.00 0.00 2.71
4755 11772 8.939201 TTTGCTGAAATATTTTGACTGAAACA 57.061 26.923 1.43 0.00 0.00 2.83
4758 11775 9.761504 TGAATTTGCTGAAATATTTTGACTGAA 57.238 25.926 1.43 0.00 31.18 3.02
4759 11776 9.414295 CTGAATTTGCTGAAATATTTTGACTGA 57.586 29.630 1.43 0.00 31.18 3.41
4760 11777 9.199982 ACTGAATTTGCTGAAATATTTTGACTG 57.800 29.630 1.43 0.00 31.18 3.51
4768 11785 9.448438 TGTGTACTACTGAATTTGCTGAAATAT 57.552 29.630 0.00 0.00 31.18 1.28
4769 11786 8.840833 TGTGTACTACTGAATTTGCTGAAATA 57.159 30.769 0.00 0.00 31.18 1.40
4770 11787 7.094634 CCTGTGTACTACTGAATTTGCTGAAAT 60.095 37.037 0.00 0.00 32.87 2.17
4771 11788 6.204688 CCTGTGTACTACTGAATTTGCTGAAA 59.795 38.462 0.00 0.00 0.00 2.69
4772 11789 5.700832 CCTGTGTACTACTGAATTTGCTGAA 59.299 40.000 0.00 0.00 0.00 3.02
4773 11790 5.011635 TCCTGTGTACTACTGAATTTGCTGA 59.988 40.000 0.00 0.00 0.00 4.26
4774 11791 5.237815 TCCTGTGTACTACTGAATTTGCTG 58.762 41.667 0.00 0.00 0.00 4.41
4775 11792 5.483685 TCCTGTGTACTACTGAATTTGCT 57.516 39.130 0.00 0.00 0.00 3.91
4776 11793 6.554334 TTTCCTGTGTACTACTGAATTTGC 57.446 37.500 0.00 0.00 0.00 3.68
4777 11794 8.322906 TGATTTCCTGTGTACTACTGAATTTG 57.677 34.615 0.00 0.00 0.00 2.32
4778 11795 8.918202 TTGATTTCCTGTGTACTACTGAATTT 57.082 30.769 0.00 0.00 0.00 1.82
4779 11796 8.918202 TTTGATTTCCTGTGTACTACTGAATT 57.082 30.769 0.00 0.00 0.00 2.17
4843 11860 9.883142 AAGGCCGAAATATTCATTTGAATTTAA 57.117 25.926 10.81 0.00 41.64 1.52
4844 11861 9.883142 AAAGGCCGAAATATTCATTTGAATTTA 57.117 25.926 10.81 0.00 41.64 1.40
4845 11862 8.791327 AAAGGCCGAAATATTCATTTGAATTT 57.209 26.923 10.81 1.94 41.64 1.82
4846 11863 8.667463 CAAAAGGCCGAAATATTCATTTGAATT 58.333 29.630 10.81 0.00 41.64 2.17
4847 11864 7.280652 CCAAAAGGCCGAAATATTCATTTGAAT 59.719 33.333 10.42 10.42 45.77 2.57
4848 11865 6.593382 CCAAAAGGCCGAAATATTCATTTGAA 59.407 34.615 0.00 0.00 34.44 2.69
4849 11866 6.105333 CCAAAAGGCCGAAATATTCATTTGA 58.895 36.000 0.00 0.00 34.44 2.69
4850 11867 5.220643 GCCAAAAGGCCGAAATATTCATTTG 60.221 40.000 0.00 0.00 34.44 2.32
4851 11868 4.875536 GCCAAAAGGCCGAAATATTCATTT 59.124 37.500 0.00 0.00 37.06 2.32
4852 11869 4.162131 AGCCAAAAGGCCGAAATATTCATT 59.838 37.500 2.33 0.00 35.12 2.57
4853 11870 3.706086 AGCCAAAAGGCCGAAATATTCAT 59.294 39.130 2.33 0.00 35.12 2.57
4854 11871 3.096092 AGCCAAAAGGCCGAAATATTCA 58.904 40.909 2.33 0.00 35.12 2.57
4855 11872 3.130340 TCAGCCAAAAGGCCGAAATATTC 59.870 43.478 2.33 0.00 35.12 1.75
4856 11873 3.096092 TCAGCCAAAAGGCCGAAATATT 58.904 40.909 2.33 0.00 35.12 1.28
4857 11874 2.733956 TCAGCCAAAAGGCCGAAATAT 58.266 42.857 2.33 0.00 35.12 1.28
4858 11875 2.208132 TCAGCCAAAAGGCCGAAATA 57.792 45.000 2.33 0.00 35.12 1.40
4859 11876 1.337118 TTCAGCCAAAAGGCCGAAAT 58.663 45.000 2.33 0.00 29.74 2.17
4860 11877 1.115467 TTTCAGCCAAAAGGCCGAAA 58.885 45.000 12.48 12.48 38.45 3.46
4861 11878 1.000731 CATTTCAGCCAAAAGGCCGAA 59.999 47.619 2.33 1.74 35.12 4.30
4862 11879 0.602562 CATTTCAGCCAAAAGGCCGA 59.397 50.000 2.33 0.00 35.12 5.54
4863 11880 0.318120 ACATTTCAGCCAAAAGGCCG 59.682 50.000 2.33 0.00 35.12 6.13
4864 11881 3.676291 TTACATTTCAGCCAAAAGGCC 57.324 42.857 2.33 0.00 35.12 5.19
4865 11882 4.376146 TGTTTACATTTCAGCCAAAAGGC 58.624 39.130 0.00 0.00 0.00 4.35
4866 11883 5.463061 CACTGTTTACATTTCAGCCAAAAGG 59.537 40.000 0.00 0.00 33.12 3.11
4867 11884 6.272318 TCACTGTTTACATTTCAGCCAAAAG 58.728 36.000 0.00 0.00 33.12 2.27
4868 11885 6.214191 TCACTGTTTACATTTCAGCCAAAA 57.786 33.333 0.00 0.00 33.12 2.44
4869 11886 5.843673 TCACTGTTTACATTTCAGCCAAA 57.156 34.783 0.00 0.00 33.12 3.28
4870 11887 5.843673 TTCACTGTTTACATTTCAGCCAA 57.156 34.783 0.00 0.00 33.12 4.52
4871 11888 5.843673 TTTCACTGTTTACATTTCAGCCA 57.156 34.783 0.00 0.00 33.12 4.75
4872 11889 7.713764 AATTTTCACTGTTTACATTTCAGCC 57.286 32.000 0.00 0.00 33.12 4.85
4873 11890 8.816144 TGAAATTTTCACTGTTTACATTTCAGC 58.184 29.630 7.74 0.00 34.08 4.26
4875 11892 9.868277 ACTGAAATTTTCACTGTTTACATTTCA 57.132 25.926 7.74 11.49 35.46 2.69
4877 11894 9.868277 TCACTGAAATTTTCACTGTTTACATTT 57.132 25.926 7.74 0.00 35.46 2.32
4880 11897 9.868277 AAATCACTGAAATTTTCACTGTTTACA 57.132 25.926 7.74 0.00 35.46 2.41
4883 11900 9.090692 CTGAAATCACTGAAATTTTCACTGTTT 57.909 29.630 7.74 11.18 35.08 2.83
4884 11901 8.253113 ACTGAAATCACTGAAATTTTCACTGTT 58.747 29.630 7.74 2.93 35.08 3.16
4885 11902 7.775120 ACTGAAATCACTGAAATTTTCACTGT 58.225 30.769 7.74 3.31 35.08 3.55
4886 11903 8.537223 CAACTGAAATCACTGAAATTTTCACTG 58.463 33.333 7.74 9.49 35.08 3.66
4887 11904 7.707893 CCAACTGAAATCACTGAAATTTTCACT 59.292 33.333 7.74 0.00 35.08 3.41
4888 11905 7.492344 ACCAACTGAAATCACTGAAATTTTCAC 59.508 33.333 7.74 0.00 35.08 3.18
4889 11906 7.492020 CACCAACTGAAATCACTGAAATTTTCA 59.508 33.333 11.19 11.19 36.80 2.69
4890 11907 7.517259 GCACCAACTGAAATCACTGAAATTTTC 60.517 37.037 2.05 2.05 0.00 2.29
4891 11908 6.258507 GCACCAACTGAAATCACTGAAATTTT 59.741 34.615 0.00 0.00 0.00 1.82
4892 11909 5.754890 GCACCAACTGAAATCACTGAAATTT 59.245 36.000 0.00 0.00 0.00 1.82
4893 11910 5.069516 AGCACCAACTGAAATCACTGAAATT 59.930 36.000 0.00 0.00 0.00 1.82
4894 11911 4.586001 AGCACCAACTGAAATCACTGAAAT 59.414 37.500 0.00 0.00 0.00 2.17
4895 11912 3.953612 AGCACCAACTGAAATCACTGAAA 59.046 39.130 0.00 0.00 0.00 2.69
4896 11913 3.316029 CAGCACCAACTGAAATCACTGAA 59.684 43.478 0.00 0.00 40.25 3.02
4897 11914 2.880268 CAGCACCAACTGAAATCACTGA 59.120 45.455 0.00 0.00 40.25 3.41
4898 11915 2.880268 TCAGCACCAACTGAAATCACTG 59.120 45.455 0.00 0.00 43.59 3.66
4899 11916 3.213206 TCAGCACCAACTGAAATCACT 57.787 42.857 0.00 0.00 43.59 3.41
4906 11923 4.734398 ACAAAATTTCAGCACCAACTGA 57.266 36.364 0.00 0.00 44.84 3.41
4907 11924 4.869297 TCAACAAAATTTCAGCACCAACTG 59.131 37.500 0.00 0.00 39.12 3.16
4908 11925 5.083533 TCAACAAAATTTCAGCACCAACT 57.916 34.783 0.00 0.00 0.00 3.16
4909 11926 5.793026 TTCAACAAAATTTCAGCACCAAC 57.207 34.783 0.00 0.00 0.00 3.77
4910 11927 5.936956 AGTTTCAACAAAATTTCAGCACCAA 59.063 32.000 0.00 0.00 0.00 3.67
4911 11928 5.350914 CAGTTTCAACAAAATTTCAGCACCA 59.649 36.000 0.00 0.00 0.00 4.17
4912 11929 5.580297 TCAGTTTCAACAAAATTTCAGCACC 59.420 36.000 0.00 0.00 0.00 5.01
4913 11930 6.645700 TCAGTTTCAACAAAATTTCAGCAC 57.354 33.333 0.00 0.00 0.00 4.40
4914 11931 7.664082 TTTCAGTTTCAACAAAATTTCAGCA 57.336 28.000 0.00 0.00 0.00 4.41
4915 11932 9.002080 CAATTTCAGTTTCAACAAAATTTCAGC 57.998 29.630 10.66 0.00 35.86 4.26
4921 11938 9.838975 GGTTTTCAATTTCAGTTTCAACAAAAT 57.161 25.926 0.00 0.00 31.86 1.82
4922 11939 8.840321 TGGTTTTCAATTTCAGTTTCAACAAAA 58.160 25.926 0.00 0.00 0.00 2.44
4923 11940 8.383318 TGGTTTTCAATTTCAGTTTCAACAAA 57.617 26.923 0.00 0.00 0.00 2.83
4924 11941 7.969536 TGGTTTTCAATTTCAGTTTCAACAA 57.030 28.000 0.00 0.00 0.00 2.83
4925 11942 7.065563 CCATGGTTTTCAATTTCAGTTTCAACA 59.934 33.333 2.57 0.00 0.00 3.33
4926 11943 7.408910 CCATGGTTTTCAATTTCAGTTTCAAC 58.591 34.615 2.57 0.00 0.00 3.18
4927 11944 6.038050 GCCATGGTTTTCAATTTCAGTTTCAA 59.962 34.615 14.67 0.00 0.00 2.69
4928 11945 5.526846 GCCATGGTTTTCAATTTCAGTTTCA 59.473 36.000 14.67 0.00 0.00 2.69
4929 11946 5.049474 GGCCATGGTTTTCAATTTCAGTTTC 60.049 40.000 14.67 0.00 0.00 2.78
4930 11947 4.821260 GGCCATGGTTTTCAATTTCAGTTT 59.179 37.500 14.67 0.00 0.00 2.66
4931 11948 4.141528 TGGCCATGGTTTTCAATTTCAGTT 60.142 37.500 14.67 0.00 0.00 3.16
4932 11949 3.390639 TGGCCATGGTTTTCAATTTCAGT 59.609 39.130 14.67 0.00 0.00 3.41
4933 11950 4.005487 TGGCCATGGTTTTCAATTTCAG 57.995 40.909 14.67 0.00 0.00 3.02
4934 11951 4.102210 TCTTGGCCATGGTTTTCAATTTCA 59.898 37.500 17.95 0.00 0.00 2.69
4935 11952 4.640364 TCTTGGCCATGGTTTTCAATTTC 58.360 39.130 17.95 0.00 0.00 2.17
4936 11953 4.703379 TCTTGGCCATGGTTTTCAATTT 57.297 36.364 17.95 0.00 0.00 1.82
4937 11954 4.644498 CTTCTTGGCCATGGTTTTCAATT 58.356 39.130 17.95 0.00 0.00 2.32
4938 11955 3.557686 GCTTCTTGGCCATGGTTTTCAAT 60.558 43.478 17.95 0.00 0.00 2.57
4939 11956 2.224257 GCTTCTTGGCCATGGTTTTCAA 60.224 45.455 17.95 11.77 0.00 2.69
4940 11957 1.344114 GCTTCTTGGCCATGGTTTTCA 59.656 47.619 17.95 4.43 0.00 2.69
4941 11958 1.344114 TGCTTCTTGGCCATGGTTTTC 59.656 47.619 17.95 1.68 0.00 2.29
4942 11959 1.422531 TGCTTCTTGGCCATGGTTTT 58.577 45.000 17.95 0.00 0.00 2.43
4943 11960 1.422531 TTGCTTCTTGGCCATGGTTT 58.577 45.000 17.95 0.00 0.00 3.27
4944 11961 1.070601 GTTTGCTTCTTGGCCATGGTT 59.929 47.619 17.95 0.00 0.00 3.67
4945 11962 0.681175 GTTTGCTTCTTGGCCATGGT 59.319 50.000 17.95 0.00 0.00 3.55
4946 11963 0.388907 CGTTTGCTTCTTGGCCATGG 60.389 55.000 17.95 7.63 0.00 3.66
4947 11964 0.314935 ACGTTTGCTTCTTGGCCATG 59.685 50.000 6.09 9.88 0.00 3.66
4948 11965 0.598065 GACGTTTGCTTCTTGGCCAT 59.402 50.000 6.09 0.00 0.00 4.40
4949 11966 0.465460 AGACGTTTGCTTCTTGGCCA 60.465 50.000 0.00 0.00 0.00 5.36
4950 11967 0.238553 GAGACGTTTGCTTCTTGGCC 59.761 55.000 0.00 0.00 0.00 5.36
4951 11968 0.110644 CGAGACGTTTGCTTCTTGGC 60.111 55.000 0.00 0.00 0.00 4.52
4952 11969 1.457303 CTCGAGACGTTTGCTTCTTGG 59.543 52.381 6.58 0.00 0.00 3.61
4953 11970 1.136502 GCTCGAGACGTTTGCTTCTTG 60.137 52.381 18.75 0.00 0.00 3.02
4954 11971 1.140816 GCTCGAGACGTTTGCTTCTT 58.859 50.000 18.75 0.00 0.00 2.52
4955 11972 1.004277 CGCTCGAGACGTTTGCTTCT 61.004 55.000 18.75 0.00 0.00 2.85
4956 11973 1.412606 CGCTCGAGACGTTTGCTTC 59.587 57.895 18.75 0.00 0.00 3.86
4957 11974 2.658707 GCGCTCGAGACGTTTGCTT 61.659 57.895 18.75 0.00 0.00 3.91
4958 11975 2.196382 TAGCGCTCGAGACGTTTGCT 62.196 55.000 16.34 15.71 34.47 3.91
4971 11988 3.441572 GCCAAATAATGATCCATAGCGCT 59.558 43.478 17.26 17.26 0.00 5.92
4996 12017 4.634004 TGATCGATTTTACGGACTGCAATT 59.366 37.500 0.00 0.00 0.00 2.32
4998 12019 3.591023 TGATCGATTTTACGGACTGCAA 58.409 40.909 0.00 0.00 0.00 4.08
5003 12027 6.823678 AAGTACATGATCGATTTTACGGAC 57.176 37.500 0.00 0.00 0.00 4.79
5037 12099 1.070758 GAGGAAGTTGTGGCTGTCTGA 59.929 52.381 0.00 0.00 0.00 3.27
5040 12102 2.191128 ATGAGGAAGTTGTGGCTGTC 57.809 50.000 0.00 0.00 0.00 3.51
5044 12106 3.507233 TGATTGAATGAGGAAGTTGTGGC 59.493 43.478 0.00 0.00 0.00 5.01
5054 12116 4.787563 GCGTGTAAGCATGATTGAATGAGG 60.788 45.833 6.43 0.00 37.05 3.86
5087 14951 4.008330 CACTTGATGATGTTCTTGAGGCT 58.992 43.478 0.00 0.00 0.00 4.58
5100 14964 5.308014 AGCAACATAACTGACACTTGATGA 58.692 37.500 0.00 0.00 0.00 2.92
5127 14991 5.129634 TCAACTGCTTTGGTTGACATCTTA 58.870 37.500 5.35 0.00 45.14 2.10
5152 15054 7.148507 CGAGTCTCAGCTCAATTAGTGATTTTT 60.149 37.037 0.00 0.00 35.07 1.94
5196 15191 8.763356 GCTGAACATGTTGAAAATGTATGAAAA 58.237 29.630 17.58 0.00 37.27 2.29
5254 15253 2.386661 AGAAATGATCGTCGTGGCTT 57.613 45.000 0.00 0.00 0.00 4.35
5369 15546 1.254026 TCCTCAAGGTTGACGACGAT 58.746 50.000 0.00 0.00 36.34 3.73
5372 15549 2.036089 ACTCTTCCTCAAGGTTGACGAC 59.964 50.000 0.00 0.00 36.34 4.34
5373 15550 2.296471 GACTCTTCCTCAAGGTTGACGA 59.704 50.000 0.00 0.00 36.34 4.20
5374 15551 2.610727 GGACTCTTCCTCAAGGTTGACG 60.611 54.545 0.00 0.00 39.13 4.35
5418 15595 2.281208 GTACAACACGGCCAGGCA 60.281 61.111 15.19 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.