Multiple sequence alignment - TraesCS5B01G281400

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G281400 chr5B 100.000 5106 0 0 4689 9794 466649615 466654720 0.000000e+00 9430.0
1 TraesCS5B01G281400 chr5B 100.000 4328 0 0 1 4328 466644927 466649254 0.000000e+00 7993.0
2 TraesCS5B01G281400 chr5B 80.974 657 112 8 8241 8889 466636235 466636886 8.780000e-140 508.0
3 TraesCS5B01G281400 chr5B 85.102 443 61 3 5951 6392 466634935 466635373 1.940000e-121 448.0
4 TraesCS5B01G281400 chr5B 96.818 220 7 0 2 221 197183676 197183457 1.550000e-97 368.0
5 TraesCS5B01G281400 chr5B 81.513 357 61 4 3975 4328 13097050 13096696 1.240000e-73 289.0
6 TraesCS5B01G281400 chr5B 76.768 396 57 18 6443 6804 382911253 382910859 1.300000e-43 189.0
7 TraesCS5B01G281400 chr5D 92.236 4946 278 48 4880 9794 388050284 388055154 0.000000e+00 6909.0
8 TraesCS5B01G281400 chr5D 88.060 2278 209 32 880 3115 388046109 388048365 0.000000e+00 2641.0
9 TraesCS5B01G281400 chr5D 89.206 630 49 3 3717 4328 388049402 388050030 0.000000e+00 769.0
10 TraesCS5B01G281400 chr5D 83.397 524 61 12 5889 6397 388036963 388037475 6.930000e-126 462.0
11 TraesCS5B01G281400 chr5D 92.135 267 17 4 217 482 388044170 388044433 3.340000e-99 374.0
12 TraesCS5B01G281400 chr5D 78.304 507 89 16 9199 9692 535238073 535237575 3.440000e-79 307.0
13 TraesCS5B01G281400 chr5D 82.749 342 59 0 3972 4313 466585217 466585558 1.240000e-78 305.0
14 TraesCS5B01G281400 chr5D 83.916 286 33 8 917 1192 388025049 388025331 2.710000e-65 261.0
15 TraesCS5B01G281400 chr5D 73.522 778 147 32 1506 2262 411635111 411635850 3.530000e-59 241.0
16 TraesCS5B01G281400 chr5D 80.831 313 39 11 895 1187 387990716 387991027 9.900000e-55 226.0
17 TraesCS5B01G281400 chr5D 90.000 170 5 4 466 625 388044713 388044880 9.970000e-50 209.0
18 TraesCS5B01G281400 chr5D 90.123 162 12 3 7470 7628 150835568 150835728 3.580000e-49 207.0
19 TraesCS5B01G281400 chr5D 76.017 467 75 21 5952 6386 238905008 238904547 3.580000e-49 207.0
20 TraesCS5B01G281400 chr5D 93.382 136 8 1 3543 3678 388049269 388049403 6.000000e-47 200.0
21 TraesCS5B01G281400 chr5D 90.441 136 9 2 638 773 388045762 388045893 1.010000e-39 176.0
22 TraesCS5B01G281400 chr5D 72.857 490 104 22 2578 3054 534081957 534082430 3.690000e-29 141.0
23 TraesCS5B01G281400 chr5D 83.803 142 20 1 2555 2693 102271512 102271653 2.220000e-26 132.0
24 TraesCS5B01G281400 chr5D 91.781 73 6 0 3295 3367 48457824 48457896 1.740000e-17 102.0
25 TraesCS5B01G281400 chr5A 92.782 2092 100 24 5766 7831 491238959 491241025 0.000000e+00 2979.0
26 TraesCS5B01G281400 chr5A 85.421 2291 228 48 880 3116 491232950 491235188 0.000000e+00 2283.0
27 TraesCS5B01G281400 chr5A 94.196 1275 67 4 7829 9101 491241210 491242479 0.000000e+00 1938.0
28 TraesCS5B01G281400 chr5A 91.659 1079 78 5 4693 5770 491236902 491237969 0.000000e+00 1483.0
29 TraesCS5B01G281400 chr5A 86.750 800 65 14 3543 4328 491236097 491236869 0.000000e+00 852.0
30 TraesCS5B01G281400 chr5A 92.481 266 17 3 217 482 491215314 491215576 2.580000e-100 377.0
31 TraesCS5B01G281400 chr5A 75.000 588 130 11 1947 2529 750406 750981 1.260000e-63 255.0
32 TraesCS5B01G281400 chr5A 90.798 163 10 4 466 625 491215852 491216012 7.710000e-51 213.0
33 TraesCS5B01G281400 chr5A 93.671 79 2 2 695 773 491231005 491231080 2.240000e-21 115.0
34 TraesCS5B01G281400 chr5A 92.308 78 4 2 3290 3367 691978045 691977970 1.040000e-19 110.0
35 TraesCS5B01G281400 chr5A 83.544 79 13 0 5293 5371 7626297 7626375 3.790000e-09 75.0
36 TraesCS5B01G281400 chr5A 79.381 97 20 0 5200 5296 575697492 575697588 1.770000e-07 69.4
37 TraesCS5B01G281400 chr1D 82.746 823 121 16 1697 2515 362250233 362251038 0.000000e+00 713.0
38 TraesCS5B01G281400 chr1D 80.870 460 71 12 3879 4328 313795154 313795606 7.280000e-91 346.0
39 TraesCS5B01G281400 chr1D 79.249 506 77 20 9200 9688 26962032 26961538 2.640000e-85 327.0
40 TraesCS5B01G281400 chr1D 78.884 502 87 12 9199 9687 468493639 468494134 1.230000e-83 322.0
41 TraesCS5B01G281400 chr1D 81.763 329 54 4 2507 2831 73312976 73312650 4.510000e-68 270.0
42 TraesCS5B01G281400 chr1D 84.729 203 23 5 3140 3340 327934940 327935136 7.760000e-46 196.0
43 TraesCS5B01G281400 chr1D 76.103 272 57 5 2834 3103 204844923 204845188 1.720000e-27 135.0
44 TraesCS5B01G281400 chr1D 80.000 125 23 2 6812 6935 411585534 411585411 3.770000e-14 91.6
45 TraesCS5B01G281400 chr7A 76.529 1308 208 51 1840 3111 264845027 264843783 3.000000e-174 623.0
46 TraesCS5B01G281400 chr7A 97.260 219 6 0 2 220 704628655 704628873 1.200000e-98 372.0
47 TraesCS5B01G281400 chr7A 77.570 535 96 9 2507 3017 200237863 200238397 1.600000e-77 302.0
48 TraesCS5B01G281400 chr7A 77.867 497 101 6 9199 9688 63555684 63556178 5.750000e-77 300.0
49 TraesCS5B01G281400 chr7A 89.535 172 14 3 7470 7638 494786990 494786820 2.140000e-51 215.0
50 TraesCS5B01G281400 chr7A 84.868 152 18 5 1515 1664 115664630 115664482 2.200000e-31 148.0
51 TraesCS5B01G281400 chr7A 74.788 353 72 14 5028 5368 725714749 725715096 1.030000e-29 143.0
52 TraesCS5B01G281400 chr7A 77.519 258 42 8 1847 2103 115862775 115863017 3.690000e-29 141.0
53 TraesCS5B01G281400 chr7A 82.353 102 12 4 8741 8838 632908106 632908007 6.300000e-12 84.2
54 TraesCS5B01G281400 chr7A 82.353 102 12 4 8741 8838 632970650 632970551 6.300000e-12 84.2
55 TraesCS5B01G281400 chr7A 82.979 94 10 4 8741 8830 632587584 632587493 8.150000e-11 80.5
56 TraesCS5B01G281400 chr7A 81.373 102 13 4 8741 8838 633037100 633037001 2.930000e-10 78.7
57 TraesCS5B01G281400 chr7A 82.222 90 14 1 8748 8835 631960561 631960472 1.050000e-09 76.8
58 TraesCS5B01G281400 chr7A 83.077 65 9 1 2423 2485 23010969 23011033 3.820000e-04 58.4
59 TraesCS5B01G281400 chr4D 77.885 1040 174 27 2103 3115 359674214 359673204 6.550000e-166 595.0
60 TraesCS5B01G281400 chr4D 77.246 1002 142 43 1532 2515 62305916 62306849 8.780000e-140 508.0
61 TraesCS5B01G281400 chr4D 77.846 492 90 13 9210 9688 147223399 147223884 4.480000e-73 287.0
62 TraesCS5B01G281400 chr4D 90.741 162 11 2 7470 7628 36603208 36603048 7.710000e-51 213.0
63 TraesCS5B01G281400 chr1A 84.667 600 88 4 4701 5297 107469112 107469710 6.550000e-166 595.0
64 TraesCS5B01G281400 chr1A 77.079 493 81 16 9199 9689 313228986 313228524 1.260000e-63 255.0
65 TraesCS5B01G281400 chr1A 79.196 423 43 19 1508 1918 277588682 277589071 1.630000e-62 252.0
66 TraesCS5B01G281400 chr3B 78.010 955 154 33 1540 2479 457556486 457555573 5.170000e-152 549.0
67 TraesCS5B01G281400 chr3B 76.905 840 135 32 1508 2336 42160692 42159901 1.180000e-113 422.0
68 TraesCS5B01G281400 chr3B 78.783 641 116 13 4701 5338 54506927 54506304 7.080000e-111 412.0
69 TraesCS5B01G281400 chr3B 97.273 220 6 0 1 220 678450028 678449809 3.340000e-99 374.0
70 TraesCS5B01G281400 chr3B 96.818 220 7 0 1 220 817574901 817574682 1.550000e-97 368.0
71 TraesCS5B01G281400 chr3B 78.193 509 89 13 9199 9690 85050866 85050363 1.240000e-78 305.0
72 TraesCS5B01G281400 chr3B 76.541 503 99 14 9199 9688 712764692 712765188 3.510000e-64 257.0
73 TraesCS5B01G281400 chr3B 100.000 32 0 0 1008 1039 725856719 725856688 1.060000e-04 60.2
74 TraesCS5B01G281400 chr7D 78.596 855 141 20 1444 2285 34482667 34483492 2.420000e-145 527.0
75 TraesCS5B01G281400 chr7D 83.088 408 67 2 3909 4315 575215137 575214731 4.320000e-98 370.0
76 TraesCS5B01G281400 chr7D 86.817 311 39 2 3975 4284 269525698 269525389 7.280000e-91 346.0
77 TraesCS5B01G281400 chr7D 82.609 345 56 3 3972 4315 74954597 74954938 1.600000e-77 302.0
78 TraesCS5B01G281400 chr7D 85.787 197 26 2 9492 9688 29992990 29992796 3.580000e-49 207.0
79 TraesCS5B01G281400 chr7D 90.123 162 12 3 7470 7628 397554916 397555076 3.580000e-49 207.0
80 TraesCS5B01G281400 chr7D 85.024 207 22 3 3150 3355 541500388 541500190 1.670000e-47 202.0
81 TraesCS5B01G281400 chr7D 80.695 259 43 5 1444 1695 34481582 34481840 2.790000e-45 195.0
82 TraesCS5B01G281400 chr7D 74.388 531 101 21 1617 2133 531175532 531175023 2.790000e-45 195.0
83 TraesCS5B01G281400 chr4B 77.361 932 145 37 1532 2440 89931274 89932162 8.840000e-135 492.0
84 TraesCS5B01G281400 chr2D 80.645 620 104 12 4759 5368 88404063 88404676 5.360000e-127 466.0
85 TraesCS5B01G281400 chr2D 78.049 492 76 15 9199 9688 158443390 158443851 2.080000e-71 281.0
86 TraesCS5B01G281400 chr2D 79.856 278 38 13 2837 3110 520640904 520640641 4.670000e-43 187.0
87 TraesCS5B01G281400 chr2D 80.769 234 38 5 3140 3367 633234154 633233922 1.010000e-39 176.0
88 TraesCS5B01G281400 chr2D 79.051 253 33 11 6526 6759 647477953 647478204 1.320000e-33 156.0
89 TraesCS5B01G281400 chr2D 81.771 192 28 4 3150 3340 531439990 531439805 4.740000e-33 154.0
90 TraesCS5B01G281400 chr7B 76.139 1010 166 39 1514 2515 689425715 689424773 2.490000e-125 460.0
91 TraesCS5B01G281400 chr7B 80.708 565 96 10 4713 5272 470525569 470526125 2.530000e-115 427.0
92 TraesCS5B01G281400 chr7B 79.896 383 46 17 6434 6788 100730801 100731180 1.630000e-62 252.0
93 TraesCS5B01G281400 chr7B 76.587 504 89 18 9199 9688 449778997 449778509 5.870000e-62 250.0
94 TraesCS5B01G281400 chr7B 81.333 225 29 10 3140 3360 388635272 388635487 4.700000e-38 171.0
95 TraesCS5B01G281400 chr7B 81.915 94 11 4 8741 8830 592361312 592361221 3.790000e-09 75.0
96 TraesCS5B01G281400 chr1B 75.941 1010 169 32 1508 2512 321001488 321002428 1.500000e-122 451.0
97 TraesCS5B01G281400 chr1B 96.444 225 5 3 1 223 619093330 619093553 1.550000e-97 368.0
98 TraesCS5B01G281400 chr1B 85.044 341 50 1 3972 4312 161986996 161987335 7.280000e-91 346.0
99 TraesCS5B01G281400 chr1B 76.911 628 121 12 2507 3111 628119957 628119331 1.580000e-87 335.0
100 TraesCS5B01G281400 chr1B 75.765 392 80 10 9199 9578 466986220 466986608 6.040000e-42 183.0
101 TraesCS5B01G281400 chr1B 79.752 242 33 8 6435 6662 104783813 104784052 2.830000e-35 161.0
102 TraesCS5B01G281400 chr1B 94.444 72 4 0 3296 3367 661629128 661629199 2.890000e-20 111.0
103 TraesCS5B01G281400 chr6A 75.694 1008 174 32 1514 2515 586869290 586868348 1.170000e-118 438.0
104 TraesCS5B01G281400 chr6A 77.980 495 97 11 9199 9688 133411998 133412485 5.750000e-77 300.0
105 TraesCS5B01G281400 chr6A 77.722 395 53 16 6443 6804 185245347 185245739 9.970000e-50 209.0
106 TraesCS5B01G281400 chr6A 79.870 308 33 15 6526 6805 560575790 560576096 2.160000e-46 198.0
107 TraesCS5B01G281400 chr6A 76.131 398 55 18 6443 6804 36254586 36254979 1.310000e-38 172.0
108 TraesCS5B01G281400 chrUn 82.661 496 80 5 2033 2522 108395551 108395056 1.510000e-117 435.0
109 TraesCS5B01G281400 chrUn 80.000 245 33 12 6507 6738 75437941 75438182 6.080000e-37 167.0
110 TraesCS5B01G281400 chrUn 80.469 128 23 2 6809 6935 319710439 319710565 8.100000e-16 97.1
111 TraesCS5B01G281400 chrUn 80.469 128 23 2 6809 6935 325765875 325766001 8.100000e-16 97.1
112 TraesCS5B01G281400 chrUn 80.800 125 22 2 6812 6935 325768173 325768050 8.100000e-16 97.1
113 TraesCS5B01G281400 chrUn 80.800 125 22 2 6812 6935 348338199 348338076 8.100000e-16 97.1
114 TraesCS5B01G281400 chrUn 80.800 125 22 2 6812 6935 413507948 413507825 8.100000e-16 97.1
115 TraesCS5B01G281400 chrUn 84.810 79 9 2 2931 3007 103944886 103944963 1.050000e-09 76.8
116 TraesCS5B01G281400 chr2B 78.769 650 132 6 4709 5356 764508461 764509106 1.950000e-116 431.0
117 TraesCS5B01G281400 chr2B 96.847 222 7 0 1 222 223728696 223728475 1.200000e-98 372.0
118 TraesCS5B01G281400 chr2B 96.035 227 8 1 2 228 692455601 692455826 1.550000e-97 368.0
119 TraesCS5B01G281400 chr2B 75.288 781 152 26 1476 2246 93647287 93648036 1.580000e-87 335.0
120 TraesCS5B01G281400 chr2B 84.000 175 19 4 3135 3305 243578140 243578309 1.020000e-34 159.0
121 TraesCS5B01G281400 chr2B 82.386 176 30 1 3133 3307 683784311 683784136 1.700000e-32 152.0
122 TraesCS5B01G281400 chr2B 96.154 78 3 0 3290 3367 683778574 683778497 2.870000e-25 128.0
123 TraesCS5B01G281400 chr2B 75.490 306 48 18 6512 6804 754980602 754980311 3.710000e-24 124.0
124 TraesCS5B01G281400 chr2B 94.872 78 3 1 3290 3367 683784111 683784035 4.800000e-23 121.0
125 TraesCS5B01G281400 chr2B 95.890 73 3 0 3295 3367 683818959 683818887 1.730000e-22 119.0
126 TraesCS5B01G281400 chr3D 80.466 558 104 5 4713 5268 594175102 594175656 1.180000e-113 422.0
127 TraesCS5B01G281400 chr3D 78.166 687 121 22 4699 5367 555446634 555447309 2.550000e-110 411.0
128 TraesCS5B01G281400 chr3D 82.927 205 28 4 3152 3355 136776665 136776467 2.810000e-40 178.0
129 TraesCS5B01G281400 chr3D 86.400 125 14 1 3377 3498 68530111 68529987 6.170000e-27 134.0
130 TraesCS5B01G281400 chr3D 89.744 78 7 1 3290 3367 247910116 247910040 2.250000e-16 99.0
131 TraesCS5B01G281400 chr6B 77.035 823 131 25 1517 2334 604597192 604596423 4.230000e-113 420.0
132 TraesCS5B01G281400 chr6B 78.373 504 89 13 9199 9686 396903746 396903247 9.550000e-80 309.0
133 TraesCS5B01G281400 chr6B 76.098 615 129 13 2507 3110 476411653 476412260 1.240000e-78 305.0
134 TraesCS5B01G281400 chr6D 80.245 572 93 13 4727 5287 382794981 382794419 7.080000e-111 412.0
135 TraesCS5B01G281400 chr6D 76.183 655 124 21 1517 2156 361545100 361545737 5.710000e-82 316.0
136 TraesCS5B01G281400 chr6D 78.529 503 87 16 9199 9688 146524394 146524888 2.660000e-80 311.0
137 TraesCS5B01G281400 chr6D 77.113 485 92 12 9205 9681 296327013 296326540 7.540000e-66 263.0
138 TraesCS5B01G281400 chr6D 90.741 162 11 3 7470 7628 48458134 48457974 7.710000e-51 213.0
139 TraesCS5B01G281400 chr6D 89.349 169 13 5 7463 7628 128092901 128093067 3.580000e-49 207.0
140 TraesCS5B01G281400 chr6D 78.571 308 38 16 6542 6832 27547278 27547574 2.810000e-40 178.0
141 TraesCS5B01G281400 chr6D 83.889 180 26 1 2563 2739 30295966 30295787 1.690000e-37 169.0
142 TraesCS5B01G281400 chr6D 75.976 333 49 17 1708 2026 327633852 327634167 1.030000e-29 143.0
143 TraesCS5B01G281400 chr4A 97.357 227 5 1 1 226 4778186 4778412 1.540000e-102 385.0
144 TraesCS5B01G281400 chr3A 97.758 223 5 0 1 223 468165996 468166218 1.540000e-102 385.0
145 TraesCS5B01G281400 chr3A 77.714 525 100 9 2605 3115 40160218 40159697 1.240000e-78 305.0
146 TraesCS5B01G281400 chr3A 79.808 312 35 16 6519 6804 610107144 610106835 1.670000e-47 202.0
147 TraesCS5B01G281400 chr3A 81.905 210 35 3 3133 3340 18968103 18967895 3.640000e-39 174.0
148 TraesCS5B01G281400 chr3A 92.424 66 5 0 1518 1583 715915653 715915588 2.910000e-15 95.3
149 TraesCS5B01G281400 chr3A 100.000 32 0 0 1008 1039 685294236 685294205 1.060000e-04 60.2
150 TraesCS5B01G281400 chr2A 77.311 476 84 11 3857 4313 104878758 104879228 9.760000e-65 259.0
151 TraesCS5B01G281400 chr2A 88.372 172 16 3 7463 7631 184561322 184561152 4.640000e-48 204.0
152 TraesCS5B01G281400 chr2A 75.650 423 81 11 3922 4328 719335980 719335564 3.610000e-44 191.0
153 TraesCS5B01G281400 chr2A 87.407 135 17 0 3237 3371 136640223 136640357 1.320000e-33 156.0
154 TraesCS5B01G281400 chr2A 81.098 164 23 7 1512 1673 526313699 526313542 3.710000e-24 124.0
155 TraesCS5B01G281400 chr2A 85.577 104 12 3 2923 3024 666567311 666567413 1.350000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G281400 chr5B 466644927 466654720 9793 False 8711.500000 9430 100.0000 1 9794 2 chr5B.!!$F2 9793
1 TraesCS5B01G281400 chr5B 466634935 466636886 1951 False 478.000000 508 83.0380 5951 8889 2 chr5B.!!$F1 2938
2 TraesCS5B01G281400 chr5D 388044170 388055154 10984 False 1611.142857 6909 90.7800 217 9794 7 chr5D.!!$F10 9577
3 TraesCS5B01G281400 chr5D 388036963 388037475 512 False 462.000000 462 83.3970 5889 6397 1 chr5D.!!$F6 508
4 TraesCS5B01G281400 chr5D 411635111 411635850 739 False 241.000000 241 73.5220 1506 2262 1 chr5D.!!$F7 756
5 TraesCS5B01G281400 chr5A 491231005 491242479 11474 False 1608.333333 2979 90.7465 695 9101 6 chr5A.!!$F5 8406
6 TraesCS5B01G281400 chr5A 491215314 491216012 698 False 295.000000 377 91.6395 217 625 2 chr5A.!!$F4 408
7 TraesCS5B01G281400 chr5A 750406 750981 575 False 255.000000 255 75.0000 1947 2529 1 chr5A.!!$F1 582
8 TraesCS5B01G281400 chr1D 362250233 362251038 805 False 713.000000 713 82.7460 1697 2515 1 chr1D.!!$F4 818
9 TraesCS5B01G281400 chr7A 264843783 264845027 1244 True 623.000000 623 76.5290 1840 3111 1 chr7A.!!$R2 1271
10 TraesCS5B01G281400 chr7A 200237863 200238397 534 False 302.000000 302 77.5700 2507 3017 1 chr7A.!!$F4 510
11 TraesCS5B01G281400 chr4D 359673204 359674214 1010 True 595.000000 595 77.8850 2103 3115 1 chr4D.!!$R2 1012
12 TraesCS5B01G281400 chr4D 62305916 62306849 933 False 508.000000 508 77.2460 1532 2515 1 chr4D.!!$F1 983
13 TraesCS5B01G281400 chr1A 107469112 107469710 598 False 595.000000 595 84.6670 4701 5297 1 chr1A.!!$F1 596
14 TraesCS5B01G281400 chr3B 457555573 457556486 913 True 549.000000 549 78.0100 1540 2479 1 chr3B.!!$R4 939
15 TraesCS5B01G281400 chr3B 42159901 42160692 791 True 422.000000 422 76.9050 1508 2336 1 chr3B.!!$R1 828
16 TraesCS5B01G281400 chr3B 54506304 54506927 623 True 412.000000 412 78.7830 4701 5338 1 chr3B.!!$R2 637
17 TraesCS5B01G281400 chr3B 85050363 85050866 503 True 305.000000 305 78.1930 9199 9690 1 chr3B.!!$R3 491
18 TraesCS5B01G281400 chr7D 34481582 34483492 1910 False 361.000000 527 79.6455 1444 2285 2 chr7D.!!$F3 841
19 TraesCS5B01G281400 chr4B 89931274 89932162 888 False 492.000000 492 77.3610 1532 2440 1 chr4B.!!$F1 908
20 TraesCS5B01G281400 chr2D 88404063 88404676 613 False 466.000000 466 80.6450 4759 5368 1 chr2D.!!$F1 609
21 TraesCS5B01G281400 chr7B 689424773 689425715 942 True 460.000000 460 76.1390 1514 2515 1 chr7B.!!$R3 1001
22 TraesCS5B01G281400 chr7B 470525569 470526125 556 False 427.000000 427 80.7080 4713 5272 1 chr7B.!!$F3 559
23 TraesCS5B01G281400 chr1B 321001488 321002428 940 False 451.000000 451 75.9410 1508 2512 1 chr1B.!!$F3 1004
24 TraesCS5B01G281400 chr1B 628119331 628119957 626 True 335.000000 335 76.9110 2507 3111 1 chr1B.!!$R1 604
25 TraesCS5B01G281400 chr6A 586868348 586869290 942 True 438.000000 438 75.6940 1514 2515 1 chr6A.!!$R1 1001
26 TraesCS5B01G281400 chr2B 764508461 764509106 645 False 431.000000 431 78.7690 4709 5356 1 chr2B.!!$F4 647
27 TraesCS5B01G281400 chr2B 93647287 93648036 749 False 335.000000 335 75.2880 1476 2246 1 chr2B.!!$F1 770
28 TraesCS5B01G281400 chr3D 594175102 594175656 554 False 422.000000 422 80.4660 4713 5268 1 chr3D.!!$F2 555
29 TraesCS5B01G281400 chr3D 555446634 555447309 675 False 411.000000 411 78.1660 4699 5367 1 chr3D.!!$F1 668
30 TraesCS5B01G281400 chr6B 604596423 604597192 769 True 420.000000 420 77.0350 1517 2334 1 chr6B.!!$R2 817
31 TraesCS5B01G281400 chr6B 476411653 476412260 607 False 305.000000 305 76.0980 2507 3110 1 chr6B.!!$F1 603
32 TraesCS5B01G281400 chr6D 382794419 382794981 562 True 412.000000 412 80.2450 4727 5287 1 chr6D.!!$R4 560
33 TraesCS5B01G281400 chr6D 361545100 361545737 637 False 316.000000 316 76.1830 1517 2156 1 chr6D.!!$F5 639
34 TraesCS5B01G281400 chr3A 40159697 40160218 521 True 305.000000 305 77.7140 2605 3115 1 chr3A.!!$R2 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.0 0.00 0.00 0.00 4.30 F
1407 4411 0.179018 ATTAGGGCATCTCCAACGGC 60.179 55.0 0.00 0.00 36.21 5.68 F
3258 7529 0.035458 ACGAAGAGGCCTGGTTTGAG 59.965 55.0 12.00 2.17 0.00 3.02 F
3289 7560 0.031178 GGCGGGCTTTTAGCATGATG 59.969 55.0 0.00 0.00 44.75 3.07 F
3520 7791 0.167470 TGCGAGAGGTTTACGAGTCG 59.833 55.0 11.85 11.85 0.00 4.18 F
5238 10391 0.328450 TGGGCTGGATATGAGGGGTT 60.328 55.0 0.00 0.00 0.00 4.11 F
5433 10586 0.609131 GCTGCAGTGTATTGGGGTGT 60.609 55.0 16.64 0.00 0.00 4.16 F
6944 13117 0.899717 TGCATGAGAAAAGGCCCACC 60.900 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 4468 0.179108 GTATCTGTGCCCGTGGACTC 60.179 60.000 0.00 0.00 0.00 3.36 R
3270 7541 0.031178 CATCATGCTAAAAGCCCGCC 59.969 55.000 0.00 0.00 41.51 6.13 R
5251 10404 0.106335 TCAAACGGGCCTCAAACGTA 59.894 50.000 0.84 0.00 40.31 3.57 R
5377 10530 7.839680 AAAAGGGATGTATGTTGAGAAAAGT 57.160 32.000 0.00 0.00 0.00 2.66 R
5476 10629 3.381590 AGTCAAGGAAAAAGCAACCTCAC 59.618 43.478 0.00 0.00 33.16 3.51 R
6401 12563 2.165437 TGCTTTTAATGGGCGGATTCAC 59.835 45.455 0.00 0.00 0.00 3.18 R
7102 13275 2.172679 TGATACCCGTCTGTTGCTACA 58.827 47.619 0.03 0.03 0.00 2.74 R
8848 15288 0.515564 CCGACAAACAACCTTAGCCG 59.484 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.803279 GGAACCCTACTAAAATGTGGATTAG 57.197 40.000 0.00 0.00 35.67 1.73
27 28 7.344134 GGAACCCTACTAAAATGTGGATTAGT 58.656 38.462 3.93 3.93 43.05 2.24
28 29 7.832685 GGAACCCTACTAAAATGTGGATTAGTT 59.167 37.037 3.79 0.00 41.35 2.24
29 30 8.803397 AACCCTACTAAAATGTGGATTAGTTC 57.197 34.615 3.79 0.00 41.35 3.01
30 31 8.159229 ACCCTACTAAAATGTGGATTAGTTCT 57.841 34.615 3.79 0.00 41.35 3.01
31 32 8.265764 ACCCTACTAAAATGTGGATTAGTTCTC 58.734 37.037 3.79 0.00 41.35 2.87
32 33 8.487028 CCCTACTAAAATGTGGATTAGTTCTCT 58.513 37.037 3.79 0.00 41.35 3.10
33 34 9.535878 CCTACTAAAATGTGGATTAGTTCTCTC 57.464 37.037 3.79 0.00 41.35 3.20
36 37 9.041354 ACTAAAATGTGGATTAGTTCTCTCTCT 57.959 33.333 0.00 0.00 38.81 3.10
37 38 9.528018 CTAAAATGTGGATTAGTTCTCTCTCTC 57.472 37.037 0.00 0.00 0.00 3.20
38 39 6.478512 AATGTGGATTAGTTCTCTCTCTCC 57.521 41.667 0.00 0.00 0.00 3.71
39 40 5.199982 TGTGGATTAGTTCTCTCTCTCCT 57.800 43.478 0.00 0.00 0.00 3.69
40 41 5.197451 TGTGGATTAGTTCTCTCTCTCCTC 58.803 45.833 0.00 0.00 0.00 3.71
41 42 5.197451 GTGGATTAGTTCTCTCTCTCCTCA 58.803 45.833 0.00 0.00 0.00 3.86
42 43 5.833131 GTGGATTAGTTCTCTCTCTCCTCAT 59.167 44.000 0.00 0.00 0.00 2.90
43 44 6.323739 GTGGATTAGTTCTCTCTCTCCTCATT 59.676 42.308 0.00 0.00 0.00 2.57
44 45 6.900186 TGGATTAGTTCTCTCTCTCCTCATTT 59.100 38.462 0.00 0.00 0.00 2.32
45 46 8.061920 TGGATTAGTTCTCTCTCTCCTCATTTA 58.938 37.037 0.00 0.00 0.00 1.40
46 47 8.919145 GGATTAGTTCTCTCTCTCCTCATTTAA 58.081 37.037 0.00 0.00 0.00 1.52
47 48 9.744468 GATTAGTTCTCTCTCTCCTCATTTAAC 57.256 37.037 0.00 0.00 0.00 2.01
48 49 8.887264 TTAGTTCTCTCTCTCCTCATTTAACT 57.113 34.615 0.00 0.00 0.00 2.24
49 50 7.404671 AGTTCTCTCTCTCCTCATTTAACTC 57.595 40.000 0.00 0.00 0.00 3.01
50 51 6.379988 AGTTCTCTCTCTCCTCATTTAACTCC 59.620 42.308 0.00 0.00 0.00 3.85
51 52 6.086011 TCTCTCTCTCCTCATTTAACTCCT 57.914 41.667 0.00 0.00 0.00 3.69
52 53 6.126409 TCTCTCTCTCCTCATTTAACTCCTC 58.874 44.000 0.00 0.00 0.00 3.71
53 54 6.069088 TCTCTCTCTCCTCATTTAACTCCTCT 60.069 42.308 0.00 0.00 0.00 3.69
54 55 6.126409 TCTCTCTCCTCATTTAACTCCTCTC 58.874 44.000 0.00 0.00 0.00 3.20
55 56 5.205056 TCTCTCCTCATTTAACTCCTCTCC 58.795 45.833 0.00 0.00 0.00 3.71
56 57 5.043732 TCTCTCCTCATTTAACTCCTCTCCT 60.044 44.000 0.00 0.00 0.00 3.69
57 58 5.594777 TCTCCTCATTTAACTCCTCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
58 59 6.026186 TCTCCTCATTTAACTCCTCTCCTTT 58.974 40.000 0.00 0.00 0.00 3.11
59 60 7.189794 TCTCCTCATTTAACTCCTCTCCTTTA 58.810 38.462 0.00 0.00 0.00 1.85
60 61 7.678598 TCTCCTCATTTAACTCCTCTCCTTTAA 59.321 37.037 0.00 0.00 0.00 1.52
61 62 7.621796 TCCTCATTTAACTCCTCTCCTTTAAC 58.378 38.462 0.00 0.00 0.00 2.01
62 63 7.236847 TCCTCATTTAACTCCTCTCCTTTAACA 59.763 37.037 0.00 0.00 0.00 2.41
63 64 8.049721 CCTCATTTAACTCCTCTCCTTTAACAT 58.950 37.037 0.00 0.00 0.00 2.71
67 68 8.732746 TTTAACTCCTCTCCTTTAACATATGC 57.267 34.615 1.58 0.00 0.00 3.14
68 69 4.950050 ACTCCTCTCCTTTAACATATGCG 58.050 43.478 1.58 0.00 0.00 4.73
69 70 4.649674 ACTCCTCTCCTTTAACATATGCGA 59.350 41.667 1.58 0.00 0.00 5.10
70 71 5.201713 TCCTCTCCTTTAACATATGCGAG 57.798 43.478 1.58 0.00 0.00 5.03
71 72 4.649674 TCCTCTCCTTTAACATATGCGAGT 59.350 41.667 1.58 0.00 0.00 4.18
72 73 5.128827 TCCTCTCCTTTAACATATGCGAGTT 59.871 40.000 1.58 0.00 0.00 3.01
73 74 5.463724 CCTCTCCTTTAACATATGCGAGTTC 59.536 44.000 1.58 0.00 0.00 3.01
74 75 5.041287 TCTCCTTTAACATATGCGAGTTCG 58.959 41.667 1.58 0.00 43.27 3.95
75 76 4.116961 TCCTTTAACATATGCGAGTTCGG 58.883 43.478 1.58 0.00 40.23 4.30
76 77 3.247648 CCTTTAACATATGCGAGTTCGGG 59.752 47.826 1.58 0.00 40.23 5.14
77 78 3.804786 TTAACATATGCGAGTTCGGGA 57.195 42.857 1.58 0.00 40.23 5.14
78 79 2.910688 AACATATGCGAGTTCGGGAT 57.089 45.000 1.58 0.00 40.23 3.85
79 80 2.910688 ACATATGCGAGTTCGGGATT 57.089 45.000 1.58 0.00 40.23 3.01
80 81 2.483876 ACATATGCGAGTTCGGGATTG 58.516 47.619 1.58 0.00 40.23 2.67
81 82 1.800586 CATATGCGAGTTCGGGATTGG 59.199 52.381 3.50 0.00 40.23 3.16
82 83 1.116308 TATGCGAGTTCGGGATTGGA 58.884 50.000 3.50 0.00 40.23 3.53
83 84 0.179073 ATGCGAGTTCGGGATTGGAG 60.179 55.000 3.50 0.00 40.23 3.86
84 85 1.521681 GCGAGTTCGGGATTGGAGG 60.522 63.158 3.50 0.00 40.23 4.30
85 86 1.144057 CGAGTTCGGGATTGGAGGG 59.856 63.158 0.00 0.00 35.37 4.30
86 87 1.614241 CGAGTTCGGGATTGGAGGGT 61.614 60.000 0.00 0.00 35.37 4.34
87 88 0.618981 GAGTTCGGGATTGGAGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
88 89 1.004394 GAGTTCGGGATTGGAGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
89 90 1.173913 GTTCGGGATTGGAGGGTTTG 58.826 55.000 0.00 0.00 0.00 2.93
90 91 0.039035 TTCGGGATTGGAGGGTTTGG 59.961 55.000 0.00 0.00 0.00 3.28
91 92 0.842905 TCGGGATTGGAGGGTTTGGA 60.843 55.000 0.00 0.00 0.00 3.53
92 93 0.394352 CGGGATTGGAGGGTTTGGAG 60.394 60.000 0.00 0.00 0.00 3.86
93 94 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
94 95 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
95 96 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
96 97 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
97 98 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
98 99 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
99 100 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
100 101 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
101 102 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
102 103 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
103 104 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
104 105 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
105 106 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
106 107 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
107 108 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
108 109 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
109 110 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
110 111 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
113 114 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
114 115 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
115 116 9.507329 GGAGGATAATAAATGCTCATTAACTCA 57.493 33.333 8.48 0.00 38.10 3.41
151 152 8.574251 TTTAGTATTTGTATCCAAGCATGTGT 57.426 30.769 0.00 0.00 0.00 3.72
152 153 6.441093 AGTATTTGTATCCAAGCATGTGTG 57.559 37.500 0.00 0.00 0.00 3.82
153 154 6.179756 AGTATTTGTATCCAAGCATGTGTGA 58.820 36.000 0.00 0.00 0.00 3.58
154 155 5.571784 ATTTGTATCCAAGCATGTGTGAG 57.428 39.130 0.00 0.00 0.00 3.51
155 156 2.989909 TGTATCCAAGCATGTGTGAGG 58.010 47.619 0.00 0.00 0.00 3.86
156 157 1.672881 GTATCCAAGCATGTGTGAGGC 59.327 52.381 0.00 0.00 0.00 4.70
157 158 0.330604 ATCCAAGCATGTGTGAGGCT 59.669 50.000 0.00 0.00 45.93 4.58
158 159 0.983467 TCCAAGCATGTGTGAGGCTA 59.017 50.000 0.00 0.00 42.15 3.93
159 160 1.065926 TCCAAGCATGTGTGAGGCTAG 60.066 52.381 0.00 0.00 42.15 3.42
160 161 0.731417 CAAGCATGTGTGAGGCTAGC 59.269 55.000 6.04 6.04 42.15 3.42
161 162 0.325933 AAGCATGTGTGAGGCTAGCA 59.674 50.000 18.24 0.00 42.15 3.49
162 163 0.325933 AGCATGTGTGAGGCTAGCAA 59.674 50.000 18.24 0.00 40.84 3.91
163 164 0.731417 GCATGTGTGAGGCTAGCAAG 59.269 55.000 18.24 0.00 0.00 4.01
164 165 1.947678 GCATGTGTGAGGCTAGCAAGT 60.948 52.381 18.24 0.00 0.00 3.16
165 166 2.430465 CATGTGTGAGGCTAGCAAGTT 58.570 47.619 18.24 0.00 0.00 2.66
166 167 2.638480 TGTGTGAGGCTAGCAAGTTT 57.362 45.000 18.24 0.00 0.00 2.66
167 168 2.930950 TGTGTGAGGCTAGCAAGTTTT 58.069 42.857 18.24 0.00 0.00 2.43
168 169 4.079980 TGTGTGAGGCTAGCAAGTTTTA 57.920 40.909 18.24 0.00 0.00 1.52
169 170 4.065088 TGTGTGAGGCTAGCAAGTTTTAG 58.935 43.478 18.24 0.00 0.00 1.85
170 171 4.065789 GTGTGAGGCTAGCAAGTTTTAGT 58.934 43.478 18.24 0.00 0.00 2.24
171 172 4.152580 GTGTGAGGCTAGCAAGTTTTAGTC 59.847 45.833 18.24 0.00 0.00 2.59
172 173 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
173 174 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
174 175 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
175 176 3.267031 AGGCTAGCAAGTTTTAGTCCCAT 59.733 43.478 18.24 0.00 0.00 4.00
176 177 4.017126 GGCTAGCAAGTTTTAGTCCCATT 58.983 43.478 18.24 0.00 0.00 3.16
177 178 5.045140 AGGCTAGCAAGTTTTAGTCCCATTA 60.045 40.000 18.24 0.00 0.00 1.90
178 179 5.066117 GGCTAGCAAGTTTTAGTCCCATTAC 59.934 44.000 18.24 0.00 0.00 1.89
179 180 5.880887 GCTAGCAAGTTTTAGTCCCATTACT 59.119 40.000 10.63 0.00 0.00 2.24
180 181 6.374613 GCTAGCAAGTTTTAGTCCCATTACTT 59.625 38.462 10.63 0.00 0.00 2.24
181 182 7.094334 GCTAGCAAGTTTTAGTCCCATTACTTT 60.094 37.037 10.63 0.00 0.00 2.66
182 183 7.597288 AGCAAGTTTTAGTCCCATTACTTTT 57.403 32.000 0.00 0.00 0.00 2.27
183 184 8.700439 AGCAAGTTTTAGTCCCATTACTTTTA 57.300 30.769 0.00 0.00 0.00 1.52
184 185 8.793592 AGCAAGTTTTAGTCCCATTACTTTTAG 58.206 33.333 0.00 0.00 0.00 1.85
185 186 8.573885 GCAAGTTTTAGTCCCATTACTTTTAGT 58.426 33.333 0.00 0.00 0.00 2.24
187 188 9.856162 AAGTTTTAGTCCCATTACTTTTAGTCA 57.144 29.630 0.00 0.00 0.00 3.41
190 191 8.801882 TTTAGTCCCATTACTTTTAGTCATGG 57.198 34.615 11.40 11.40 45.26 3.66
206 207 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
207 208 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
208 209 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
209 210 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
210 211 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
211 212 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
212 213 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
213 214 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
214 215 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
215 216 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
225 226 5.099042 TCCAAGCACCCTCTAAGTATTTC 57.901 43.478 0.00 0.00 0.00 2.17
251 252 4.563140 TGTCAAGGGTATACTTTGGACC 57.437 45.455 15.71 3.92 0.00 4.46
273 274 4.394920 CCAATAATTTCATATACGCCCGCT 59.605 41.667 0.00 0.00 0.00 5.52
327 328 0.833287 TGTGCTAGCTCTTGGATCCC 59.167 55.000 17.23 0.00 0.00 3.85
330 331 0.316841 GCTAGCTCTTGGATCCCTCG 59.683 60.000 9.90 0.00 0.00 4.63
354 355 7.910162 TCGTATTGCATCTTTTTCTTTATGAGC 59.090 33.333 0.00 0.00 0.00 4.26
422 424 0.250295 CTTGGTGTCGGCTTCTCCAA 60.250 55.000 10.26 10.26 37.08 3.53
428 430 1.347707 TGTCGGCTTCTCCAAGATGTT 59.652 47.619 0.00 0.00 34.01 2.71
453 455 5.452777 GTCTATGTTGACAACTTTTCAGGC 58.547 41.667 18.73 5.75 36.97 4.85
557 864 3.007506 TGGATGCAGAAAGAAGACGGTTA 59.992 43.478 0.00 0.00 0.00 2.85
562 869 5.997385 TGCAGAAAGAAGACGGTTAATTTC 58.003 37.500 0.00 0.00 0.00 2.17
568 875 9.346005 AGAAAGAAGACGGTTAATTTCCTTAAA 57.654 29.630 0.00 0.00 31.22 1.52
667 1845 2.799126 ATATGGGCGTTGTCTTTCCA 57.201 45.000 0.00 0.00 0.00 3.53
840 2021 3.003793 ACGATCACGACCATCATACTCTG 59.996 47.826 0.00 0.00 42.66 3.35
842 2023 4.612486 CGATCACGACCATCATACTCTGAG 60.612 50.000 2.45 2.45 42.66 3.35
844 2025 1.683917 ACGACCATCATACTCTGAGCC 59.316 52.381 4.19 0.00 37.28 4.70
848 2029 4.038042 CGACCATCATACTCTGAGCCTTTA 59.962 45.833 4.19 0.00 37.28 1.85
849 2030 5.279206 CGACCATCATACTCTGAGCCTTTAT 60.279 44.000 4.19 0.00 37.28 1.40
850 2031 6.107901 ACCATCATACTCTGAGCCTTTATC 57.892 41.667 4.19 0.00 37.28 1.75
851 2032 5.167121 CCATCATACTCTGAGCCTTTATCG 58.833 45.833 4.19 0.00 37.28 2.92
852 2033 4.244425 TCATACTCTGAGCCTTTATCGC 57.756 45.455 4.19 0.00 0.00 4.58
855 2083 3.334583 ACTCTGAGCCTTTATCGCAAA 57.665 42.857 4.19 0.00 0.00 3.68
912 3886 1.747145 CGCTCAGATGCAGATCCCT 59.253 57.895 0.00 0.00 0.00 4.20
914 3888 1.050204 GCTCAGATGCAGATCCCTCT 58.950 55.000 0.00 0.00 0.00 3.69
980 3957 2.007568 ACCGCCTCTCCTCTCCCTA 61.008 63.158 0.00 0.00 0.00 3.53
1068 4045 0.314302 CTGTCCGTCGTGTTTCCTCT 59.686 55.000 0.00 0.00 0.00 3.69
1086 4063 1.902508 TCTGAGGTCACAGATGGGAAC 59.097 52.381 0.00 0.00 41.21 3.62
1088 4065 4.325729 CTGAGGTCACAGATGGGAACCC 62.326 59.091 2.46 2.46 44.07 4.11
1202 4179 4.493545 CGATTACACCGTGGAAGTTAATGC 60.494 45.833 1.94 0.00 0.00 3.56
1306 4283 1.736681 ACCGTAGCGAGAGTAAGTGAC 59.263 52.381 0.00 0.00 0.00 3.67
1332 4309 9.703892 CCAATACTACTCATCTCTTTTCCTATG 57.296 37.037 0.00 0.00 0.00 2.23
1334 4311 5.837437 ACTACTCATCTCTTTTCCTATGCG 58.163 41.667 0.00 0.00 0.00 4.73
1335 4312 5.594725 ACTACTCATCTCTTTTCCTATGCGA 59.405 40.000 0.00 0.00 0.00 5.10
1336 4313 4.688021 ACTCATCTCTTTTCCTATGCGAC 58.312 43.478 0.00 0.00 0.00 5.19
1385 4389 7.040062 ACCTTTTTCCACGTCAATATTTGATCA 60.040 33.333 0.00 0.00 42.47 2.92
1400 4404 8.749026 ATATTTGATCATGATTAGGGCATCTC 57.251 34.615 10.14 0.00 0.00 2.75
1405 4409 2.620251 TGATTAGGGCATCTCCAACG 57.380 50.000 0.00 0.00 36.21 4.10
1407 4411 0.179018 ATTAGGGCATCTCCAACGGC 60.179 55.000 0.00 0.00 36.21 5.68
1410 4414 2.700773 GGGCATCTCCAACGGCAAC 61.701 63.158 0.00 0.00 36.21 4.17
1411 4415 1.675641 GGCATCTCCAACGGCAACT 60.676 57.895 0.00 0.00 34.01 3.16
1432 4458 7.574967 GCAACTCGTAAATATTTATGGATGGGG 60.575 40.741 21.76 11.40 32.00 4.96
1434 4460 7.751646 ACTCGTAAATATTTATGGATGGGGAA 58.248 34.615 21.76 4.89 32.00 3.97
1436 4462 8.574251 TCGTAAATATTTATGGATGGGGAATG 57.426 34.615 21.76 1.18 32.00 2.67
1438 4464 7.613801 CGTAAATATTTATGGATGGGGAATGGA 59.386 37.037 16.61 0.00 0.00 3.41
1439 4465 7.797121 AAATATTTATGGATGGGGAATGGAC 57.203 36.000 0.00 0.00 0.00 4.02
1440 4466 6.741500 ATATTTATGGATGGGGAATGGACT 57.259 37.500 0.00 0.00 0.00 3.85
1441 4467 3.882102 TTATGGATGGGGAATGGACTG 57.118 47.619 0.00 0.00 0.00 3.51
1442 4468 0.855598 ATGGATGGGGAATGGACTGG 59.144 55.000 0.00 0.00 0.00 4.00
1463 4491 1.679641 TCCACGGGCACAGATACGA 60.680 57.895 0.00 0.00 0.00 3.43
1474 4502 1.132643 ACAGATACGAGAGAACGCCAC 59.867 52.381 0.00 0.00 36.70 5.01
1487 4515 2.442087 GCCACCCAACCATAGCCC 60.442 66.667 0.00 0.00 0.00 5.19
1674 5793 3.046087 CTGTCCTGCTGCACCGTG 61.046 66.667 0.00 0.00 0.00 4.94
1675 5794 3.814615 CTGTCCTGCTGCACCGTGT 62.815 63.158 0.00 0.00 0.00 4.49
1677 5796 2.591429 TCCTGCTGCACCGTGTTG 60.591 61.111 0.00 0.00 0.00 3.33
1788 5919 2.041686 GTCGCCGAGGAGTCACTCT 61.042 63.158 4.40 0.00 35.33 3.24
1842 5994 1.609208 CAACTGCTAAAGGTGCTGGT 58.391 50.000 0.00 0.00 36.61 4.00
1897 6060 3.052181 GCTAAGCGACCACTCCTTC 57.948 57.895 0.00 0.00 0.00 3.46
1933 6096 4.420143 CCATCAAGGCGACGGTAG 57.580 61.111 0.00 0.00 0.00 3.18
1934 6097 1.883084 CCATCAAGGCGACGGTAGC 60.883 63.158 4.52 4.52 0.00 3.58
1935 6098 1.153647 CATCAAGGCGACGGTAGCA 60.154 57.895 15.05 0.00 36.08 3.49
1936 6099 0.530650 CATCAAGGCGACGGTAGCAT 60.531 55.000 15.05 4.97 36.08 3.79
1937 6100 0.178068 ATCAAGGCGACGGTAGCATT 59.822 50.000 15.05 11.27 39.30 3.56
2026 6201 1.529948 TCCGAGTCGTTGTGGACCT 60.530 57.895 12.31 0.00 37.66 3.85
2077 6252 1.517694 GAGCGACGACCGGCATTTA 60.518 57.895 0.00 0.00 39.04 1.40
2421 6614 1.267121 GTCCTTCACCTGCTGGAGTA 58.733 55.000 17.64 1.17 37.04 2.59
2483 6677 4.821589 GGCTCCTCCTTCACGCGG 62.822 72.222 12.47 0.00 0.00 6.46
2551 6745 4.735132 CGGAGCCGCCTTCGTGAA 62.735 66.667 0.00 0.00 35.30 3.18
2560 6754 1.874345 GCCTTCGTGAAGAGACGGGA 61.874 60.000 11.11 0.00 40.79 5.14
2625 6873 3.333219 CCTTGCAGGAGGAGCCCA 61.333 66.667 0.00 0.00 37.67 5.36
2628 6876 4.980592 TGCAGGAGGAGCCCACCA 62.981 66.667 9.66 0.00 36.71 4.17
2643 6891 2.969238 CCATCGTGGATGCGGCTC 60.969 66.667 0.00 0.00 40.96 4.70
2645 6893 4.592192 ATCGTGGATGCGGCTCGG 62.592 66.667 0.00 0.00 0.00 4.63
2695 6943 4.968197 GCCTGACGACGAACTTCT 57.032 55.556 0.00 0.00 0.00 2.85
2781 7032 0.415429 AGGGCTCAGAGAGGAGGAAA 59.585 55.000 0.00 0.00 35.41 3.13
2866 7137 2.435938 GTCGGCCCGCTTCAATGA 60.436 61.111 0.00 0.00 0.00 2.57
2879 7150 0.107643 TCAATGAGGCACAACGGTCA 59.892 50.000 0.00 0.00 0.00 4.02
2995 7266 2.247437 GGATCAATGTCGGCCGCTC 61.247 63.158 23.51 16.67 0.00 5.03
3019 7290 2.440796 CTGGGCGGGCATGAATGT 60.441 61.111 3.27 0.00 0.00 2.71
3024 7295 2.398554 GCGGGCATGAATGTGACGT 61.399 57.895 0.00 0.00 0.00 4.34
3033 7304 3.945981 TGAATGTGACGTGGTAAGCTA 57.054 42.857 0.00 0.00 0.00 3.32
3085 7356 2.604152 GGTGGGTGGTTTGGGTGA 59.396 61.111 0.00 0.00 0.00 4.02
3116 7387 2.889512 TCAGAAGAGGGCTTGTGAGTA 58.110 47.619 0.00 0.00 45.98 2.59
3118 7389 2.828520 CAGAAGAGGGCTTGTGAGTAGA 59.171 50.000 0.00 0.00 45.48 2.59
3120 7391 1.562783 AGAGGGCTTGTGAGTAGACC 58.437 55.000 0.00 0.00 41.46 3.85
3121 7392 3.796866 AGGGCTTGTGAGTAGACCT 57.203 52.632 0.00 0.00 46.65 3.85
3123 7394 2.100605 GGGCTTGTGAGTAGACCTTG 57.899 55.000 0.00 0.00 37.84 3.61
3124 7395 1.623811 GGGCTTGTGAGTAGACCTTGA 59.376 52.381 0.00 0.00 37.84 3.02
3125 7396 2.613223 GGGCTTGTGAGTAGACCTTGAC 60.613 54.545 0.00 0.00 37.84 3.18
3126 7397 2.037251 GGCTTGTGAGTAGACCTTGACA 59.963 50.000 0.00 0.00 0.00 3.58
3127 7398 3.307059 GGCTTGTGAGTAGACCTTGACAT 60.307 47.826 0.00 0.00 0.00 3.06
3128 7399 4.081642 GGCTTGTGAGTAGACCTTGACATA 60.082 45.833 0.00 0.00 0.00 2.29
3129 7400 5.105752 GCTTGTGAGTAGACCTTGACATAG 58.894 45.833 0.00 0.00 0.00 2.23
3130 7401 5.655488 CTTGTGAGTAGACCTTGACATAGG 58.345 45.833 0.00 0.00 41.31 2.57
3131 7402 3.447586 TGTGAGTAGACCTTGACATAGGC 59.552 47.826 0.00 0.00 38.99 3.93
3132 7403 3.447586 GTGAGTAGACCTTGACATAGGCA 59.552 47.826 0.00 0.00 38.99 4.75
3133 7404 3.701542 TGAGTAGACCTTGACATAGGCAG 59.298 47.826 0.00 0.00 38.99 4.85
3134 7405 2.432510 AGTAGACCTTGACATAGGCAGC 59.567 50.000 0.00 0.00 38.99 5.25
3135 7406 0.543749 AGACCTTGACATAGGCAGCC 59.456 55.000 1.84 1.84 38.99 4.85
3136 7407 0.543749 GACCTTGACATAGGCAGCCT 59.456 55.000 20.63 20.63 38.99 4.58
3137 7408 0.254178 ACCTTGACATAGGCAGCCTG 59.746 55.000 25.59 11.94 38.99 4.85
3138 7409 0.465097 CCTTGACATAGGCAGCCTGG 60.465 60.000 25.59 18.06 34.61 4.45
3139 7410 1.077501 TTGACATAGGCAGCCTGGC 60.078 57.895 25.59 12.30 44.10 4.85
3157 7428 4.430765 CCGACCCGACCGACCTTG 62.431 72.222 0.00 0.00 0.00 3.61
3158 7429 3.677648 CGACCCGACCGACCTTGT 61.678 66.667 0.00 0.00 0.00 3.16
3159 7430 2.260743 GACCCGACCGACCTTGTC 59.739 66.667 0.00 0.00 0.00 3.18
3160 7431 3.292500 GACCCGACCGACCTTGTCC 62.293 68.421 0.00 0.00 0.00 4.02
3161 7432 3.307906 CCCGACCGACCTTGTCCA 61.308 66.667 0.00 0.00 0.00 4.02
3162 7433 2.048503 CCGACCGACCTTGTCCAC 60.049 66.667 0.00 0.00 0.00 4.02
3163 7434 2.430244 CGACCGACCTTGTCCACG 60.430 66.667 0.00 0.00 0.00 4.94
3188 7459 3.780624 GCTCGGGCCTAGATTTCAA 57.219 52.632 9.63 0.00 0.00 2.69
3189 7460 1.587547 GCTCGGGCCTAGATTTCAAG 58.412 55.000 9.63 0.00 0.00 3.02
3190 7461 1.587547 CTCGGGCCTAGATTTCAAGC 58.412 55.000 0.84 0.00 0.00 4.01
3191 7462 0.180406 TCGGGCCTAGATTTCAAGCC 59.820 55.000 0.84 0.00 43.09 4.35
3193 7464 2.707902 GGCCTAGATTTCAAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
3194 7465 0.180406 GGCCTAGATTTCAAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
3195 7466 1.202818 GGCCTAGATTTCAAGCCCGAT 60.203 52.381 0.00 0.00 37.66 4.18
3196 7467 1.876156 GCCTAGATTTCAAGCCCGATG 59.124 52.381 0.00 0.00 0.00 3.84
3197 7468 2.498167 CCTAGATTTCAAGCCCGATGG 58.502 52.381 0.00 0.00 0.00 3.51
3198 7469 2.104792 CCTAGATTTCAAGCCCGATGGA 59.895 50.000 0.00 0.00 0.00 3.41
3199 7470 3.244700 CCTAGATTTCAAGCCCGATGGAT 60.245 47.826 0.00 0.00 0.00 3.41
3200 7471 2.579873 AGATTTCAAGCCCGATGGATG 58.420 47.619 0.00 0.00 0.00 3.51
3201 7472 1.610522 GATTTCAAGCCCGATGGATGG 59.389 52.381 0.00 0.00 0.00 3.51
3224 7495 4.176752 GCCAGACCCGGTCCCATC 62.177 72.222 14.32 0.00 32.18 3.51
3225 7496 2.687200 CCAGACCCGGTCCCATCA 60.687 66.667 14.32 0.00 32.18 3.07
3226 7497 2.072487 CCAGACCCGGTCCCATCAT 61.072 63.158 14.32 0.00 32.18 2.45
3227 7498 0.762842 CCAGACCCGGTCCCATCATA 60.763 60.000 14.32 0.00 32.18 2.15
3228 7499 1.352083 CAGACCCGGTCCCATCATAT 58.648 55.000 14.32 0.00 32.18 1.78
3229 7500 1.699634 CAGACCCGGTCCCATCATATT 59.300 52.381 14.32 0.00 32.18 1.28
3230 7501 2.106511 CAGACCCGGTCCCATCATATTT 59.893 50.000 14.32 0.00 32.18 1.40
3231 7502 2.106511 AGACCCGGTCCCATCATATTTG 59.893 50.000 14.32 0.00 32.18 2.32
3232 7503 1.247567 CCCGGTCCCATCATATTTGC 58.752 55.000 0.00 0.00 0.00 3.68
3233 7504 0.874390 CCGGTCCCATCATATTTGCG 59.126 55.000 0.00 0.00 0.00 4.85
3234 7505 1.593196 CGGTCCCATCATATTTGCGT 58.407 50.000 0.00 0.00 0.00 5.24
3235 7506 1.264020 CGGTCCCATCATATTTGCGTG 59.736 52.381 0.00 0.00 0.00 5.34
3236 7507 2.297701 GGTCCCATCATATTTGCGTGT 58.702 47.619 0.00 0.00 0.00 4.49
3237 7508 2.687935 GGTCCCATCATATTTGCGTGTT 59.312 45.455 0.00 0.00 0.00 3.32
3238 7509 3.880490 GGTCCCATCATATTTGCGTGTTA 59.120 43.478 0.00 0.00 0.00 2.41
3239 7510 4.336993 GGTCCCATCATATTTGCGTGTTAA 59.663 41.667 0.00 0.00 0.00 2.01
3240 7511 5.270853 GTCCCATCATATTTGCGTGTTAAC 58.729 41.667 0.00 0.00 0.00 2.01
3252 7523 1.439679 GTGTTAACGAAGAGGCCTGG 58.560 55.000 12.00 0.00 0.00 4.45
3253 7524 1.053424 TGTTAACGAAGAGGCCTGGT 58.947 50.000 12.00 0.00 0.00 4.00
3254 7525 1.418637 TGTTAACGAAGAGGCCTGGTT 59.581 47.619 12.00 11.63 0.00 3.67
3255 7526 2.158726 TGTTAACGAAGAGGCCTGGTTT 60.159 45.455 12.00 0.63 0.00 3.27
3256 7527 2.178912 TAACGAAGAGGCCTGGTTTG 57.821 50.000 12.00 10.25 0.00 2.93
3257 7528 0.472471 AACGAAGAGGCCTGGTTTGA 59.528 50.000 12.00 0.00 0.00 2.69
3258 7529 0.035458 ACGAAGAGGCCTGGTTTGAG 59.965 55.000 12.00 2.17 0.00 3.02
3259 7530 0.674895 CGAAGAGGCCTGGTTTGAGG 60.675 60.000 12.00 0.00 36.03 3.86
3266 7537 1.609783 CCTGGTTTGAGGCCCTAGG 59.390 63.158 0.06 0.06 0.00 3.02
3285 7556 2.828549 CCGGCGGGCTTTTAGCAT 60.829 61.111 20.56 0.00 44.75 3.79
3286 7557 2.408835 CGGCGGGCTTTTAGCATG 59.591 61.111 0.00 0.00 44.75 4.06
3287 7558 2.112198 CGGCGGGCTTTTAGCATGA 61.112 57.895 0.00 0.00 44.75 3.07
3288 7559 1.447317 CGGCGGGCTTTTAGCATGAT 61.447 55.000 0.00 0.00 44.75 2.45
3289 7560 0.031178 GGCGGGCTTTTAGCATGATG 59.969 55.000 0.00 0.00 44.75 3.07
3290 7561 0.031178 GCGGGCTTTTAGCATGATGG 59.969 55.000 0.00 0.00 44.75 3.51
3291 7562 0.670162 CGGGCTTTTAGCATGATGGG 59.330 55.000 0.00 0.00 44.75 4.00
3292 7563 0.390492 GGGCTTTTAGCATGATGGGC 59.610 55.000 0.00 0.00 44.75 5.36
3293 7564 0.031178 GGCTTTTAGCATGATGGGCG 59.969 55.000 0.00 0.00 44.75 6.13
3294 7565 0.031178 GCTTTTAGCATGATGGGCGG 59.969 55.000 0.00 0.00 41.89 6.13
3295 7566 0.670162 CTTTTAGCATGATGGGCGGG 59.330 55.000 0.00 0.00 36.08 6.13
3296 7567 0.754957 TTTTAGCATGATGGGCGGGG 60.755 55.000 0.00 0.00 36.08 5.73
3297 7568 3.790416 TTAGCATGATGGGCGGGGC 62.790 63.158 0.00 0.00 36.08 5.80
3313 7584 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
3328 7599 3.603144 TTTTTGCATCGGGCTTTGG 57.397 47.368 0.00 0.00 45.15 3.28
3329 7600 0.755686 TTTTTGCATCGGGCTTTGGT 59.244 45.000 0.00 0.00 45.15 3.67
3330 7601 1.621992 TTTTGCATCGGGCTTTGGTA 58.378 45.000 0.00 0.00 45.15 3.25
3331 7602 1.173043 TTTGCATCGGGCTTTGGTAG 58.827 50.000 0.00 0.00 45.15 3.18
3332 7603 0.679640 TTGCATCGGGCTTTGGTAGG 60.680 55.000 0.00 0.00 45.15 3.18
3368 7639 4.838152 CCGGCCCGACAGATGGTG 62.838 72.222 3.71 0.00 0.00 4.17
3369 7640 4.838152 CGGCCCGACAGATGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
3370 7641 4.489771 GGCCCGACAGATGGTGGG 62.490 72.222 0.00 7.16 44.41 4.61
3373 7644 3.716195 CCGACAGATGGTGGGGCA 61.716 66.667 0.00 0.00 41.36 5.36
3374 7645 2.591753 CGACAGATGGTGGGGCAT 59.408 61.111 0.00 0.00 0.00 4.40
3375 7646 1.695114 CCGACAGATGGTGGGGCATA 61.695 60.000 0.00 0.00 41.36 3.14
3376 7647 0.532862 CGACAGATGGTGGGGCATAC 60.533 60.000 0.00 0.00 0.00 2.39
3377 7648 0.839946 GACAGATGGTGGGGCATACT 59.160 55.000 0.00 0.00 0.00 2.12
3378 7649 1.212935 GACAGATGGTGGGGCATACTT 59.787 52.381 0.00 0.00 0.00 2.24
3379 7650 1.064463 ACAGATGGTGGGGCATACTTG 60.064 52.381 0.00 0.00 0.00 3.16
3380 7651 1.064463 CAGATGGTGGGGCATACTTGT 60.064 52.381 0.00 0.00 0.00 3.16
3390 7661 0.391130 GCATACTTGTGAGCGGTCCA 60.391 55.000 12.85 6.92 0.00 4.02
3421 7692 1.070786 GCCCCACGTTTGTCTCTGA 59.929 57.895 0.00 0.00 0.00 3.27
3442 7713 1.300481 TTGCGGAACAAATCGTGTCA 58.700 45.000 0.00 0.00 40.60 3.58
3449 7720 1.878953 ACAAATCGTGTCAGGACCAC 58.121 50.000 0.00 0.00 34.38 4.16
3452 7723 2.781595 AATCGTGTCAGGACCACGCC 62.782 60.000 14.93 0.00 41.48 5.68
3467 7738 2.805546 GCCGCAGACCGATACAGA 59.194 61.111 0.00 0.00 40.02 3.41
3470 7741 1.663379 CCGCAGACCGATACAGACCA 61.663 60.000 0.00 0.00 40.02 4.02
3516 7787 0.800683 CGCATGCGAGAGGTTTACGA 60.801 55.000 35.82 0.00 42.83 3.43
3520 7791 0.167470 TGCGAGAGGTTTACGAGTCG 59.833 55.000 11.85 11.85 0.00 4.18
3521 7792 0.445436 GCGAGAGGTTTACGAGTCGA 59.555 55.000 21.50 0.00 0.00 4.20
3533 7804 0.446616 CGAGTCGACGTTGGAGATGA 59.553 55.000 6.73 0.00 0.00 2.92
3578 8638 8.997621 TCTAGTCAATGTTGTTCTTACATACC 57.002 34.615 0.00 0.00 35.26 2.73
3580 8640 7.672983 AGTCAATGTTGTTCTTACATACCAG 57.327 36.000 0.00 0.00 35.26 4.00
3611 8671 6.918892 AAAACTTTTGGATTTGTAACTGCC 57.081 33.333 0.00 0.00 0.00 4.85
3624 8684 3.315470 TGTAACTGCCGCACAATTTTACA 59.685 39.130 0.00 0.00 30.92 2.41
3630 8690 3.508012 TGCCGCACAATTTTACATAACCT 59.492 39.130 0.00 0.00 0.00 3.50
3678 8755 3.623510 GGAAGCCTTATAGCTGTGACAAC 59.376 47.826 0.00 0.00 44.11 3.32
3679 8756 4.508662 GAAGCCTTATAGCTGTGACAACT 58.491 43.478 0.00 0.00 44.11 3.16
3680 8757 4.130286 AGCCTTATAGCTGTGACAACTC 57.870 45.455 0.00 0.00 42.95 3.01
3681 8758 3.515502 AGCCTTATAGCTGTGACAACTCA 59.484 43.478 0.00 0.00 42.95 3.41
3682 8759 3.619038 GCCTTATAGCTGTGACAACTCAC 59.381 47.826 0.00 0.00 46.34 3.51
3693 8770 5.041951 GTGACAACTCACAACTGAAAACA 57.958 39.130 0.00 0.00 45.57 2.83
3694 8771 5.457140 GTGACAACTCACAACTGAAAACAA 58.543 37.500 0.00 0.00 45.57 2.83
3695 8772 5.918011 GTGACAACTCACAACTGAAAACAAA 59.082 36.000 0.00 0.00 45.57 2.83
3696 8773 6.586082 GTGACAACTCACAACTGAAAACAAAT 59.414 34.615 0.00 0.00 45.57 2.32
3697 8774 6.806249 TGACAACTCACAACTGAAAACAAATC 59.194 34.615 0.00 0.00 0.00 2.17
3698 8775 6.099341 ACAACTCACAACTGAAAACAAATCC 58.901 36.000 0.00 0.00 0.00 3.01
3699 8776 6.071391 ACAACTCACAACTGAAAACAAATCCT 60.071 34.615 0.00 0.00 0.00 3.24
3700 8777 7.122055 ACAACTCACAACTGAAAACAAATCCTA 59.878 33.333 0.00 0.00 0.00 2.94
3701 8778 7.264373 ACTCACAACTGAAAACAAATCCTAG 57.736 36.000 0.00 0.00 0.00 3.02
3702 8779 6.072112 TCACAACTGAAAACAAATCCTAGC 57.928 37.500 0.00 0.00 0.00 3.42
3703 8780 5.592282 TCACAACTGAAAACAAATCCTAGCA 59.408 36.000 0.00 0.00 0.00 3.49
3704 8781 6.096141 TCACAACTGAAAACAAATCCTAGCAA 59.904 34.615 0.00 0.00 0.00 3.91
3705 8782 6.418819 CACAACTGAAAACAAATCCTAGCAAG 59.581 38.462 0.00 0.00 0.00 4.01
3706 8783 6.096846 ACAACTGAAAACAAATCCTAGCAAGT 59.903 34.615 0.00 0.00 0.00 3.16
3707 8784 7.284489 ACAACTGAAAACAAATCCTAGCAAGTA 59.716 33.333 0.00 0.00 0.00 2.24
3708 8785 8.299570 CAACTGAAAACAAATCCTAGCAAGTAT 58.700 33.333 0.00 0.00 0.00 2.12
3709 8786 8.045176 ACTGAAAACAAATCCTAGCAAGTATC 57.955 34.615 0.00 0.00 0.00 2.24
3710 8787 7.665559 ACTGAAAACAAATCCTAGCAAGTATCA 59.334 33.333 0.00 0.00 0.00 2.15
3711 8788 8.579850 TGAAAACAAATCCTAGCAAGTATCAT 57.420 30.769 0.00 0.00 0.00 2.45
3712 8789 9.023962 TGAAAACAAATCCTAGCAAGTATCATT 57.976 29.630 0.00 0.00 0.00 2.57
3713 8790 9.860898 GAAAACAAATCCTAGCAAGTATCATTT 57.139 29.630 0.00 0.00 0.00 2.32
3716 8793 9.905713 AACAAATCCTAGCAAGTATCATTTAGA 57.094 29.630 0.00 0.00 0.00 2.10
3717 8794 9.905713 ACAAATCCTAGCAAGTATCATTTAGAA 57.094 29.630 0.00 0.00 0.00 2.10
3736 8813 8.873215 TTTAGAAGTTGAAGTTCTACAGTCTG 57.127 34.615 19.18 0.00 39.21 3.51
3771 8848 4.351127 AGGAAAGAGTATACCTGGTTCGT 58.649 43.478 3.84 0.00 0.00 3.85
3869 8946 4.502950 GCTTTGTAGCCTCAGAGCATCTAT 60.503 45.833 13.62 0.00 42.63 1.98
3896 8977 3.627237 GGATTTGGCAAATCTGACCCCTA 60.627 47.826 37.66 7.51 45.17 3.53
3903 8984 3.081804 CAAATCTGACCCCTAAAACGCT 58.918 45.455 0.00 0.00 0.00 5.07
3906 8987 1.906574 TCTGACCCCTAAAACGCTCAT 59.093 47.619 0.00 0.00 0.00 2.90
3940 9021 1.906824 GTCCAGGGACAGTGACCGA 60.907 63.158 13.49 0.00 44.02 4.69
3950 9031 2.571757 GTGACCGATCACGCCTCA 59.428 61.111 0.00 0.00 45.66 3.86
3957 9038 3.541632 ACCGATCACGCCTCAAATAATT 58.458 40.909 0.00 0.00 38.29 1.40
4048 9143 3.056328 GGCTTCACCGTGCCCTTC 61.056 66.667 0.00 0.00 43.11 3.46
4128 9223 3.713650 TGGGACACTAGCCAGCTC 58.286 61.111 0.00 0.00 0.00 4.09
4143 9238 1.065199 CAGCTCATGGGACTTAAGGCA 60.065 52.381 11.28 0.00 0.00 4.75
4177 9272 1.031029 GCCCTACTCTTCCTCGTCGT 61.031 60.000 0.00 0.00 0.00 4.34
4181 9276 3.269178 CCTACTCTTCCTCGTCGTAGTT 58.731 50.000 0.00 0.00 0.00 2.24
4218 9313 1.405526 CCGGTGGACGTCAGATTGATT 60.406 52.381 18.91 0.00 42.24 2.57
4268 9363 2.410687 CCACCACAACACGGTTGCA 61.411 57.895 14.29 0.00 33.25 4.08
4271 9366 2.026014 CACAACACGGTTGCAGCC 59.974 61.111 10.00 10.00 0.00 4.85
4846 9942 2.669229 CAGCGATGCCACACCACA 60.669 61.111 0.00 0.00 0.00 4.17
5000 10131 1.739049 GGATGAGCTCAGGGTCGAG 59.261 63.158 22.96 0.00 42.30 4.04
5082 10229 2.505364 GAATGGGAGCTTGGGTGGCT 62.505 60.000 0.00 0.00 43.26 4.75
5238 10391 0.328450 TGGGCTGGATATGAGGGGTT 60.328 55.000 0.00 0.00 0.00 4.11
5339 10492 2.281484 GCCCAGACGTTTGAGGCA 60.281 61.111 24.19 0.00 43.32 4.75
5377 10530 6.046593 CGGTTGTAGATGCTCTTAATACCAA 58.953 40.000 0.00 0.00 0.00 3.67
5400 10553 7.255942 CCAACTTTTCTCAACATACATCCCTTT 60.256 37.037 0.00 0.00 0.00 3.11
5404 10557 7.595819 TTTCTCAACATACATCCCTTTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
5433 10586 0.609131 GCTGCAGTGTATTGGGGTGT 60.609 55.000 16.64 0.00 0.00 4.16
5435 10588 1.541147 CTGCAGTGTATTGGGGTGTTG 59.459 52.381 5.25 0.00 0.00 3.33
5476 10629 2.178912 TGTTTTTCCCTAGCACCTCG 57.821 50.000 0.00 0.00 0.00 4.63
5508 10661 2.496899 TTCCTTGACTTCTGGGCATC 57.503 50.000 0.00 0.00 30.17 3.91
5530 10683 7.121759 GCATCTATACCTGCCATTTTGTCATAT 59.878 37.037 0.00 0.00 32.15 1.78
5570 10723 8.140112 AGTATGACCATTAGTCTTATCCCATC 57.860 38.462 0.00 0.00 46.46 3.51
5633 10786 3.005897 TGCTTGTAGGTGAGACTTGAGTC 59.994 47.826 2.93 2.93 45.08 3.36
5653 10806 8.642935 TGAGTCTTATCTCATACCCATTAGAG 57.357 38.462 0.00 0.00 39.20 2.43
5662 10815 4.523173 TCATACCCATTAGAGCGTAGAAGG 59.477 45.833 0.00 0.00 0.00 3.46
5663 10816 2.040178 ACCCATTAGAGCGTAGAAGGG 58.960 52.381 0.00 0.00 40.88 3.95
5725 10878 8.094548 GGTGATACTATATGGTATTGAGTTGCA 58.905 37.037 12.47 2.62 33.17 4.08
5775 11923 8.275040 AGTTAACTTATCATAGGCACCAATCTT 58.725 33.333 1.12 0.00 0.00 2.40
5776 11924 6.949352 AACTTATCATAGGCACCAATCTTG 57.051 37.500 0.00 0.00 0.00 3.02
5832 11980 7.503566 AGGGATAAATGAGGACATACAAACATG 59.496 37.037 0.00 0.00 35.50 3.21
6342 12496 9.540538 TCAGGTGGAATTATTTCAAGGAATAAA 57.459 29.630 0.00 0.00 35.70 1.40
6399 12561 9.349713 TGCATGTTTAACCTCCTTAATTATAGG 57.650 33.333 0.00 7.25 35.14 2.57
6401 12563 8.504005 CATGTTTAACCTCCTTAATTATAGGCG 58.496 37.037 8.30 3.91 32.59 5.52
6469 12633 4.437587 CCAAGCCCCAGGGAGCTG 62.438 72.222 19.27 13.68 39.87 4.24
6499 12663 3.197434 ACCAAATTTCTAAAGCGCGAC 57.803 42.857 12.10 0.04 0.00 5.19
6500 12664 2.812011 ACCAAATTTCTAAAGCGCGACT 59.188 40.909 12.10 3.13 0.00 4.18
6581 12751 4.546829 ACCATATACTTTCACACGTGGT 57.453 40.909 21.57 10.03 34.10 4.16
6585 12755 6.046593 CCATATACTTTCACACGTGGTGTAT 58.953 40.000 21.57 19.16 45.65 2.29
6720 12892 6.150307 TGCAGAAAACGTATATGTTTCCATGT 59.850 34.615 20.57 7.33 41.01 3.21
6827 12999 8.114102 CCGCCCATCCTATATCCTATATAACTA 58.886 40.741 0.00 0.00 0.00 2.24
6944 13117 0.899717 TGCATGAGAAAAGGCCCACC 60.900 55.000 0.00 0.00 0.00 4.61
7085 13258 6.814644 ACACAACCAAATCTCATTGCAATATG 59.185 34.615 12.53 8.00 0.00 1.78
7130 13304 5.282510 CAACAGACGGGTATCATCTAGTTC 58.717 45.833 0.00 0.00 0.00 3.01
7154 13332 7.162761 TCGAATAGTATTGGAGGTTGTTTCAA 58.837 34.615 0.00 0.00 0.00 2.69
7198 13376 3.532501 CCACAAGGGCAAAACCGT 58.467 55.556 0.00 0.00 40.62 4.83
7371 13564 3.722555 ACTTAACACATGCATCGAACG 57.277 42.857 0.00 0.00 0.00 3.95
7375 13568 1.720805 ACACATGCATCGAACGCTAA 58.279 45.000 11.03 0.00 0.00 3.09
7493 13694 6.416631 ACTCCCTCCGTTCCTAAATATAAC 57.583 41.667 0.00 0.00 0.00 1.89
7538 13739 6.422333 TGGACTACATATGGAGCAAAATGAA 58.578 36.000 15.30 0.00 0.00 2.57
7633 13838 2.853235 AAAACGGAGGGAGTGGTAAG 57.147 50.000 0.00 0.00 0.00 2.34
7637 13842 0.179073 CGGAGGGAGTGGTAAGCATG 60.179 60.000 0.00 0.00 0.00 4.06
7716 13922 9.906660 TTGTTGTTGTTCCACAATTATCTATTC 57.093 29.630 0.00 0.00 40.59 1.75
7787 13994 2.352030 CCCATGTGATCAGTTTGTGCAC 60.352 50.000 10.75 10.75 0.00 4.57
7940 14341 7.628769 ATTGTTTTGGATTCTTGTTTGCTTT 57.371 28.000 0.00 0.00 0.00 3.51
7941 14342 6.419980 TGTTTTGGATTCTTGTTTGCTTTG 57.580 33.333 0.00 0.00 0.00 2.77
7976 14411 9.088987 GATTTCCCTCTTTTTATGGGCATATAA 57.911 33.333 0.00 0.00 40.69 0.98
8154 14591 9.522804 TTTTGTTTAATATGTGACAAAGACCAC 57.477 29.630 0.00 0.00 41.37 4.16
8161 14598 4.603989 TGTGACAAAGACCACGGTTATA 57.396 40.909 0.00 0.00 36.15 0.98
8162 14599 4.562082 TGTGACAAAGACCACGGTTATAG 58.438 43.478 0.00 0.00 36.15 1.31
8336 14774 1.026718 GGGATGGAGTTGGCGAACTG 61.027 60.000 19.53 0.00 42.80 3.16
8414 14852 1.666553 AACTGATCGACGGCGCAAA 60.667 52.632 5.31 0.00 37.46 3.68
8418 14856 0.739462 TGATCGACGGCGCAAAAGAT 60.739 50.000 5.31 8.63 37.46 2.40
8423 14861 2.223611 TCGACGGCGCAAAAGATTTTTA 59.776 40.909 5.31 0.00 37.46 1.52
8470 14908 2.784347 TCACAATTAACATCCGTGGCA 58.216 42.857 0.00 0.00 0.00 4.92
8613 15051 5.141182 AGCAGGTTCTATAAAGAGATCCGA 58.859 41.667 0.00 0.00 39.42 4.55
8659 15097 3.935828 GTCTTGTGGCTTGAAGAGGTATC 59.064 47.826 0.00 0.00 0.00 2.24
8678 15116 3.627395 TCTGGTTGCGGTAATGAAGAT 57.373 42.857 0.00 0.00 0.00 2.40
8848 15288 1.230324 CGCTGCCTAATAGCTTTCCC 58.770 55.000 0.00 0.00 39.00 3.97
8859 15299 0.322546 AGCTTTCCCGGCTAAGGTTG 60.323 55.000 11.35 0.00 38.36 3.77
8861 15301 1.905637 CTTTCCCGGCTAAGGTTGTT 58.094 50.000 0.00 0.00 0.00 2.83
8908 15349 2.026729 TGAGCGGACAATGGGATTAACA 60.027 45.455 0.00 0.00 0.00 2.41
8911 15352 2.477189 GCGGACAATGGGATTAACAACG 60.477 50.000 0.00 0.00 0.00 4.10
8912 15353 2.745281 CGGACAATGGGATTAACAACGT 59.255 45.455 0.00 0.00 0.00 3.99
8940 15381 3.609853 GCAATGTGGAGTCATGGACTTA 58.390 45.455 0.00 0.00 43.53 2.24
9033 15474 8.968242 CCTTTTAAGAAAACTATGTGTCTTTGC 58.032 33.333 0.00 0.00 32.69 3.68
9140 15581 6.849085 TTTTCCTTTCCATTGCTTATGCTA 57.151 33.333 1.96 0.00 40.48 3.49
9141 15582 7.422465 TTTTCCTTTCCATTGCTTATGCTAT 57.578 32.000 1.96 0.00 40.48 2.97
9142 15583 8.532186 TTTTCCTTTCCATTGCTTATGCTATA 57.468 30.769 1.96 0.00 40.48 1.31
9143 15584 8.710749 TTTCCTTTCCATTGCTTATGCTATAT 57.289 30.769 1.96 0.00 40.48 0.86
9144 15585 9.806448 TTTCCTTTCCATTGCTTATGCTATATA 57.194 29.630 1.96 0.00 40.48 0.86
9145 15586 9.979897 TTCCTTTCCATTGCTTATGCTATATAT 57.020 29.630 1.96 0.00 40.48 0.86
9151 15592 9.783081 TCCATTGCTTATGCTATATATATGGTG 57.217 33.333 5.44 0.00 40.48 4.17
9152 15593 9.565090 CCATTGCTTATGCTATATATATGGTGT 57.435 33.333 5.44 0.00 40.48 4.16
9156 15597 9.710900 TGCTTATGCTATATATATGGTGTATGC 57.289 33.333 5.44 12.11 40.48 3.14
9157 15598 9.935241 GCTTATGCTATATATATGGTGTATGCT 57.065 33.333 5.44 0.00 36.03 3.79
9169 15610 8.885693 ATATGGTGTATGCTATGTCTCTAGAA 57.114 34.615 0.00 0.00 0.00 2.10
9170 15611 7.789202 ATGGTGTATGCTATGTCTCTAGAAT 57.211 36.000 0.00 0.00 0.00 2.40
9171 15612 8.885693 ATGGTGTATGCTATGTCTCTAGAATA 57.114 34.615 0.00 0.00 0.00 1.75
9180 15621 9.212641 TGCTATGTCTCTAGAATATTGATTTGC 57.787 33.333 0.00 0.00 0.00 3.68
9250 15691 1.906574 CCTAGTGGGCCTCAAGTGTTA 59.093 52.381 4.53 0.00 0.00 2.41
9321 15762 3.541242 TGATCTTTTTCCACCCCACAT 57.459 42.857 0.00 0.00 0.00 3.21
9324 15765 4.044065 TGATCTTTTTCCACCCCACATAGT 59.956 41.667 0.00 0.00 0.00 2.12
9325 15766 4.463050 TCTTTTTCCACCCCACATAGTT 57.537 40.909 0.00 0.00 0.00 2.24
9328 15769 3.603965 TTTCCACCCCACATAGTTGTT 57.396 42.857 0.00 0.00 32.34 2.83
9397 15841 4.811557 GCTGCTTGAAACTATTCCTCGTAT 59.188 41.667 0.00 0.00 34.49 3.06
9408 15852 6.069331 ACTATTCCTCGTATGTGTGGATACT 58.931 40.000 0.00 0.00 37.61 2.12
9438 15882 0.319211 CACGTCTACGGTGCTTGGAA 60.319 55.000 7.50 0.00 44.95 3.53
9439 15883 0.390124 ACGTCTACGGTGCTTGGAAA 59.610 50.000 7.50 0.00 44.95 3.13
9441 15885 1.459592 CGTCTACGGTGCTTGGAAAAG 59.540 52.381 0.00 0.00 35.37 2.27
9462 15906 1.511305 GTTCGAGGCATCCACGAGA 59.489 57.895 5.63 0.00 45.90 4.04
9463 15907 0.526524 GTTCGAGGCATCCACGAGAG 60.527 60.000 5.63 0.00 45.90 3.20
9481 15925 0.323542 AGACTGTTCGAGGGATCCGT 60.324 55.000 6.67 6.67 0.00 4.69
9483 15927 0.611062 ACTGTTCGAGGGATCCGTGA 60.611 55.000 12.68 7.06 0.00 4.35
9524 15979 2.161030 GTCTACACAAGGAGGAGACGT 58.839 52.381 0.00 0.00 0.00 4.34
9559 16014 2.370281 ACACGCATCACCAACTCTAG 57.630 50.000 0.00 0.00 0.00 2.43
9587 16042 1.067495 GCGGTGACTGCTTCTTCTAGT 60.067 52.381 9.57 0.00 0.00 2.57
9618 16076 0.561184 TCCCGTGATCTATCCCCAGT 59.439 55.000 0.00 0.00 0.00 4.00
9675 16133 1.810755 TGGCGCTAGAGTATCATACCG 59.189 52.381 7.64 0.00 37.82 4.02
9702 16160 5.771165 TGTCCCAACAATAGGAGTTTAAACC 59.229 40.000 14.72 6.51 31.17 3.27
9706 16164 6.452242 CCAACAATAGGAGTTTAAACCAACC 58.548 40.000 14.72 14.78 0.00 3.77
9711 16169 2.158370 AGGAGTTTAAACCAACCAGGGG 60.158 50.000 14.72 0.00 43.89 4.79
9762 16220 7.072177 TCTCATTACAGTTGGCTAAAATTCG 57.928 36.000 0.00 0.00 0.00 3.34
9789 16247 6.550108 GGGGATGATGACTTAGTAGAGTTGTA 59.450 42.308 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.579647 TCCACATTTTAGTAGGGTTCCC 57.420 45.455 0.00 0.00 0.00 3.97
2 3 7.344134 ACTAATCCACATTTTAGTAGGGTTCC 58.656 38.462 0.00 0.00 36.99 3.62
3 4 8.803397 AACTAATCCACATTTTAGTAGGGTTC 57.197 34.615 0.00 0.00 37.60 3.62
7 8 9.535878 GAGAGAACTAATCCACATTTTAGTAGG 57.464 37.037 0.00 0.00 37.60 3.18
10 11 9.041354 AGAGAGAGAACTAATCCACATTTTAGT 57.959 33.333 0.00 0.00 39.67 2.24
11 12 9.528018 GAGAGAGAGAACTAATCCACATTTTAG 57.472 37.037 0.00 0.00 0.00 1.85
12 13 8.478877 GGAGAGAGAGAACTAATCCACATTTTA 58.521 37.037 0.00 0.00 0.00 1.52
13 14 7.181845 AGGAGAGAGAGAACTAATCCACATTTT 59.818 37.037 0.00 0.00 31.94 1.82
14 15 6.671779 AGGAGAGAGAGAACTAATCCACATTT 59.328 38.462 0.00 0.00 31.94 2.32
15 16 6.201591 AGGAGAGAGAGAACTAATCCACATT 58.798 40.000 0.00 0.00 31.94 2.71
16 17 5.776358 AGGAGAGAGAGAACTAATCCACAT 58.224 41.667 0.00 0.00 31.94 3.21
17 18 5.197451 GAGGAGAGAGAGAACTAATCCACA 58.803 45.833 0.00 0.00 31.94 4.17
18 19 5.197451 TGAGGAGAGAGAGAACTAATCCAC 58.803 45.833 0.00 0.00 31.94 4.02
19 20 5.458451 TGAGGAGAGAGAGAACTAATCCA 57.542 43.478 0.00 0.00 31.94 3.41
20 21 6.976934 AATGAGGAGAGAGAGAACTAATCC 57.023 41.667 0.00 0.00 0.00 3.01
21 22 9.744468 GTTAAATGAGGAGAGAGAGAACTAATC 57.256 37.037 0.00 0.00 0.00 1.75
22 23 9.487442 AGTTAAATGAGGAGAGAGAGAACTAAT 57.513 33.333 0.00 0.00 0.00 1.73
23 24 8.887264 AGTTAAATGAGGAGAGAGAGAACTAA 57.113 34.615 0.00 0.00 0.00 2.24
24 25 7.558444 GGAGTTAAATGAGGAGAGAGAGAACTA 59.442 40.741 0.00 0.00 0.00 2.24
25 26 6.379988 GGAGTTAAATGAGGAGAGAGAGAACT 59.620 42.308 0.00 0.00 0.00 3.01
26 27 6.379988 AGGAGTTAAATGAGGAGAGAGAGAAC 59.620 42.308 0.00 0.00 0.00 3.01
27 28 6.498538 AGGAGTTAAATGAGGAGAGAGAGAA 58.501 40.000 0.00 0.00 0.00 2.87
28 29 6.069088 AGAGGAGTTAAATGAGGAGAGAGAGA 60.069 42.308 0.00 0.00 0.00 3.10
29 30 6.129179 AGAGGAGTTAAATGAGGAGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
30 31 6.086011 AGAGGAGTTAAATGAGGAGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
31 32 5.301805 GGAGAGGAGTTAAATGAGGAGAGAG 59.698 48.000 0.00 0.00 0.00 3.20
32 33 5.043732 AGGAGAGGAGTTAAATGAGGAGAGA 60.044 44.000 0.00 0.00 0.00 3.10
33 34 5.208121 AGGAGAGGAGTTAAATGAGGAGAG 58.792 45.833 0.00 0.00 0.00 3.20
34 35 5.213868 AGGAGAGGAGTTAAATGAGGAGA 57.786 43.478 0.00 0.00 0.00 3.71
35 36 5.948742 AAGGAGAGGAGTTAAATGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
36 37 7.236847 TGTTAAAGGAGAGGAGTTAAATGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
37 38 7.394816 TGTTAAAGGAGAGGAGTTAAATGAGG 58.605 38.462 0.00 0.00 0.00 3.86
41 42 9.343539 GCATATGTTAAAGGAGAGGAGTTAAAT 57.656 33.333 4.29 0.00 0.00 1.40
42 43 7.494625 CGCATATGTTAAAGGAGAGGAGTTAAA 59.505 37.037 4.29 0.00 0.00 1.52
43 44 6.984474 CGCATATGTTAAAGGAGAGGAGTTAA 59.016 38.462 4.29 0.00 0.00 2.01
44 45 6.322969 TCGCATATGTTAAAGGAGAGGAGTTA 59.677 38.462 4.29 0.00 0.00 2.24
45 46 5.128827 TCGCATATGTTAAAGGAGAGGAGTT 59.871 40.000 4.29 0.00 0.00 3.01
46 47 4.649674 TCGCATATGTTAAAGGAGAGGAGT 59.350 41.667 4.29 0.00 0.00 3.85
47 48 5.201713 TCGCATATGTTAAAGGAGAGGAG 57.798 43.478 4.29 0.00 0.00 3.69
48 49 4.649674 ACTCGCATATGTTAAAGGAGAGGA 59.350 41.667 4.29 0.00 0.00 3.71
49 50 4.950050 ACTCGCATATGTTAAAGGAGAGG 58.050 43.478 4.29 0.00 0.00 3.69
50 51 5.174035 CGAACTCGCATATGTTAAAGGAGAG 59.826 44.000 4.29 0.00 0.00 3.20
51 52 5.041287 CGAACTCGCATATGTTAAAGGAGA 58.959 41.667 4.29 0.00 0.00 3.71
52 53 4.209288 CCGAACTCGCATATGTTAAAGGAG 59.791 45.833 4.29 4.90 38.18 3.69
53 54 4.116961 CCGAACTCGCATATGTTAAAGGA 58.883 43.478 4.29 0.00 38.18 3.36
54 55 3.247648 CCCGAACTCGCATATGTTAAAGG 59.752 47.826 4.29 0.42 38.18 3.11
55 56 4.116961 TCCCGAACTCGCATATGTTAAAG 58.883 43.478 4.29 0.03 38.18 1.85
56 57 4.126208 TCCCGAACTCGCATATGTTAAA 57.874 40.909 4.29 0.00 38.18 1.52
57 58 3.804786 TCCCGAACTCGCATATGTTAA 57.195 42.857 4.29 0.00 38.18 2.01
58 59 4.055360 CAATCCCGAACTCGCATATGTTA 58.945 43.478 4.29 0.00 38.18 2.41
59 60 2.872245 CAATCCCGAACTCGCATATGTT 59.128 45.455 4.29 0.00 38.18 2.71
60 61 2.483876 CAATCCCGAACTCGCATATGT 58.516 47.619 4.29 0.00 38.18 2.29
61 62 1.800586 CCAATCCCGAACTCGCATATG 59.199 52.381 0.00 0.00 38.18 1.78
62 63 1.691976 TCCAATCCCGAACTCGCATAT 59.308 47.619 0.00 0.00 38.18 1.78
63 64 1.068588 CTCCAATCCCGAACTCGCATA 59.931 52.381 0.00 0.00 38.18 3.14
64 65 0.179073 CTCCAATCCCGAACTCGCAT 60.179 55.000 0.00 0.00 38.18 4.73
65 66 1.218047 CTCCAATCCCGAACTCGCA 59.782 57.895 0.00 0.00 38.18 5.10
66 67 1.521681 CCTCCAATCCCGAACTCGC 60.522 63.158 0.00 0.00 38.18 5.03
67 68 1.144057 CCCTCCAATCCCGAACTCG 59.856 63.158 0.00 0.00 39.44 4.18
68 69 0.618981 AACCCTCCAATCCCGAACTC 59.381 55.000 0.00 0.00 0.00 3.01
69 70 1.073098 AAACCCTCCAATCCCGAACT 58.927 50.000 0.00 0.00 0.00 3.01
70 71 1.173913 CAAACCCTCCAATCCCGAAC 58.826 55.000 0.00 0.00 0.00 3.95
71 72 0.039035 CCAAACCCTCCAATCCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
72 73 0.842905 TCCAAACCCTCCAATCCCGA 60.843 55.000 0.00 0.00 0.00 5.14
73 74 0.394352 CTCCAAACCCTCCAATCCCG 60.394 60.000 0.00 0.00 0.00 5.14
74 75 0.033109 CCTCCAAACCCTCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
75 76 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
76 77 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
77 78 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
78 79 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
79 80 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
80 81 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
81 82 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
82 83 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
83 84 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
84 85 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
87 88 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
88 89 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
89 90 9.507329 TGAGTTAATGAGCATTTATTATCCTCC 57.493 33.333 0.52 0.00 32.50 4.30
136 137 1.672881 GCCTCACACATGCTTGGATAC 59.327 52.381 4.44 0.00 0.00 2.24
137 138 1.561076 AGCCTCACACATGCTTGGATA 59.439 47.619 4.44 0.00 29.17 2.59
138 139 0.330604 AGCCTCACACATGCTTGGAT 59.669 50.000 4.44 0.00 29.17 3.41
139 140 0.983467 TAGCCTCACACATGCTTGGA 59.017 50.000 4.44 0.00 36.57 3.53
140 141 1.376543 CTAGCCTCACACATGCTTGG 58.623 55.000 4.44 0.00 36.57 3.61
141 142 0.731417 GCTAGCCTCACACATGCTTG 59.269 55.000 2.29 0.00 36.57 4.01
142 143 0.325933 TGCTAGCCTCACACATGCTT 59.674 50.000 13.29 0.00 36.57 3.91
143 144 0.325933 TTGCTAGCCTCACACATGCT 59.674 50.000 13.29 0.00 39.10 3.79
144 145 0.731417 CTTGCTAGCCTCACACATGC 59.269 55.000 13.29 0.00 0.00 4.06
145 146 2.105006 ACTTGCTAGCCTCACACATG 57.895 50.000 13.29 0.00 0.00 3.21
146 147 2.867109 AACTTGCTAGCCTCACACAT 57.133 45.000 13.29 0.00 0.00 3.21
147 148 2.638480 AAACTTGCTAGCCTCACACA 57.362 45.000 13.29 0.00 0.00 3.72
148 149 4.065789 ACTAAAACTTGCTAGCCTCACAC 58.934 43.478 13.29 0.00 0.00 3.82
149 150 4.315803 GACTAAAACTTGCTAGCCTCACA 58.684 43.478 13.29 0.00 0.00 3.58
150 151 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
151 152 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
152 153 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
153 154 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
154 155 3.067684 TGGGACTAAAACTTGCTAGCC 57.932 47.619 13.29 0.00 0.00 3.93
155 156 5.880887 AGTAATGGGACTAAAACTTGCTAGC 59.119 40.000 8.10 8.10 0.00 3.42
156 157 7.923414 AAGTAATGGGACTAAAACTTGCTAG 57.077 36.000 0.00 0.00 0.00 3.42
157 158 8.700439 AAAAGTAATGGGACTAAAACTTGCTA 57.300 30.769 0.00 0.00 0.00 3.49
158 159 7.597288 AAAAGTAATGGGACTAAAACTTGCT 57.403 32.000 0.00 0.00 0.00 3.91
159 160 8.573885 ACTAAAAGTAATGGGACTAAAACTTGC 58.426 33.333 0.00 0.00 0.00 4.01
161 162 9.856162 TGACTAAAAGTAATGGGACTAAAACTT 57.144 29.630 0.00 0.00 0.00 2.66
182 183 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
184 185 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
185 186 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
186 187 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
187 188 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
188 189 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
189 190 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
190 191 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
191 192 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
192 193 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
193 194 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
194 195 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
195 196 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
196 197 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
197 198 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
198 199 2.154567 TAGAGGGTGCTTGGATACGT 57.845 50.000 0.00 0.00 42.51 3.57
199 200 2.431057 ACTTAGAGGGTGCTTGGATACG 59.569 50.000 0.00 0.00 42.51 3.06
200 201 5.810080 ATACTTAGAGGGTGCTTGGATAC 57.190 43.478 0.00 0.00 0.00 2.24
201 202 6.615726 AGAAATACTTAGAGGGTGCTTGGATA 59.384 38.462 0.00 0.00 0.00 2.59
202 203 5.430089 AGAAATACTTAGAGGGTGCTTGGAT 59.570 40.000 0.00 0.00 0.00 3.41
203 204 4.783227 AGAAATACTTAGAGGGTGCTTGGA 59.217 41.667 0.00 0.00 0.00 3.53
204 205 5.104259 AGAAATACTTAGAGGGTGCTTGG 57.896 43.478 0.00 0.00 0.00 3.61
205 206 7.454260 AAAAGAAATACTTAGAGGGTGCTTG 57.546 36.000 0.00 0.00 37.93 4.01
206 207 7.505923 ACAAAAAGAAATACTTAGAGGGTGCTT 59.494 33.333 0.00 0.00 37.93 3.91
207 208 7.004691 ACAAAAAGAAATACTTAGAGGGTGCT 58.995 34.615 0.00 0.00 37.93 4.40
208 209 7.040686 TGACAAAAAGAAATACTTAGAGGGTGC 60.041 37.037 0.00 0.00 37.93 5.01
209 210 8.391075 TGACAAAAAGAAATACTTAGAGGGTG 57.609 34.615 0.00 0.00 37.93 4.61
210 211 8.990163 TTGACAAAAAGAAATACTTAGAGGGT 57.010 30.769 0.00 0.00 37.93 4.34
211 212 8.515414 CCTTGACAAAAAGAAATACTTAGAGGG 58.485 37.037 0.00 0.00 37.93 4.30
212 213 8.515414 CCCTTGACAAAAAGAAATACTTAGAGG 58.485 37.037 0.00 0.00 37.93 3.69
213 214 9.067986 ACCCTTGACAAAAAGAAATACTTAGAG 57.932 33.333 0.00 0.00 37.93 2.43
214 215 8.990163 ACCCTTGACAAAAAGAAATACTTAGA 57.010 30.769 0.00 0.00 37.93 2.10
225 226 7.368059 GTCCAAAGTATACCCTTGACAAAAAG 58.632 38.462 14.13 0.44 0.00 2.27
244 245 7.255660 GGGCGTATATGAAATTATTGGTCCAAA 60.256 37.037 8.75 0.00 0.00 3.28
245 246 6.207810 GGGCGTATATGAAATTATTGGTCCAA 59.792 38.462 6.80 6.80 0.00 3.53
251 252 5.447279 GGAGCGGGCGTATATGAAATTATTG 60.447 44.000 0.00 0.00 0.00 1.90
327 328 9.430838 CTCATAAAGAAAAAGATGCAATACGAG 57.569 33.333 0.00 0.00 0.00 4.18
330 331 9.578439 AAGCTCATAAAGAAAAAGATGCAATAC 57.422 29.630 0.00 0.00 0.00 1.89
422 424 5.869579 AGTTGTCAACATAGACCAACATCT 58.130 37.500 17.78 0.00 37.73 2.90
428 430 5.530915 CCTGAAAAGTTGTCAACATAGACCA 59.469 40.000 17.78 6.86 37.73 4.02
442 444 7.817418 TTATACAAGAAGTGCCTGAAAAGTT 57.183 32.000 0.00 0.00 0.00 2.66
453 455 7.745620 AACCCAGAAGTTTATACAAGAAGTG 57.254 36.000 0.00 0.00 0.00 3.16
496 795 1.040339 AAGCTAGCTCGGACCTCTGG 61.040 60.000 19.65 0.00 0.00 3.86
646 1824 3.560068 GTGGAAAGACAACGCCCATATAG 59.440 47.826 0.00 0.00 0.00 1.31
740 1919 8.796475 GGTCCACTTAAATGATAGTATACCGTA 58.204 37.037 0.00 0.00 0.00 4.02
741 1920 7.508296 AGGTCCACTTAAATGATAGTATACCGT 59.492 37.037 0.00 0.00 35.28 4.83
742 1921 7.893658 AGGTCCACTTAAATGATAGTATACCG 58.106 38.462 0.00 0.00 35.28 4.02
780 1959 9.178427 GCGTGATCGTATATATTTTATAGGTCC 57.822 37.037 0.00 0.00 39.49 4.46
781 1960 9.726232 TGCGTGATCGTATATATTTTATAGGTC 57.274 33.333 0.00 0.00 39.49 3.85
912 3886 1.593265 GGGGCGTAGAACGGAAAGA 59.407 57.895 1.25 0.00 42.82 2.52
914 3888 1.891722 GAGGGGGCGTAGAACGGAAA 61.892 60.000 1.25 0.00 42.82 3.13
980 3957 2.361865 AAGAGAGGAGGCGTCGCT 60.362 61.111 18.11 2.78 30.52 4.93
1068 4045 0.984230 GGTTCCCATCTGTGACCTCA 59.016 55.000 0.00 0.00 0.00 3.86
1090 4067 3.011517 ATCTTCCCCGCAGCCACT 61.012 61.111 0.00 0.00 0.00 4.00
1096 4073 1.615124 TCCTTGGATCTTCCCCGCA 60.615 57.895 0.00 0.00 35.03 5.69
1098 4075 1.147153 GCTCCTTGGATCTTCCCCG 59.853 63.158 0.00 0.00 35.03 5.73
1100 4077 1.524849 GCGCTCCTTGGATCTTCCC 60.525 63.158 0.00 0.00 35.03 3.97
1202 4179 2.736719 CGGTGACTGCTCTGTGGAATAG 60.737 54.545 0.00 0.00 0.00 1.73
1306 4283 9.703892 CATAGGAAAAGAGATGAGTAGTATTGG 57.296 37.037 0.00 0.00 0.00 3.16
1332 4309 1.289066 GGCCAAGGGAAAAAGTCGC 59.711 57.895 0.00 0.00 39.49 5.19
1334 4311 2.368548 ACAATGGCCAAGGGAAAAAGTC 59.631 45.455 10.96 0.00 0.00 3.01
1335 4312 2.407562 ACAATGGCCAAGGGAAAAAGT 58.592 42.857 10.96 0.00 0.00 2.66
1336 4313 3.490439 AACAATGGCCAAGGGAAAAAG 57.510 42.857 10.96 0.00 0.00 2.27
1385 4389 2.224621 CCGTTGGAGATGCCCTAATCAT 60.225 50.000 0.00 0.00 34.97 2.45
1400 4404 4.609691 AATATTTACGAGTTGCCGTTGG 57.390 40.909 0.00 0.00 43.20 3.77
1405 4409 7.305474 CCATCCATAAATATTTACGAGTTGCC 58.695 38.462 10.07 0.00 0.00 4.52
1407 4411 7.663905 TCCCCATCCATAAATATTTACGAGTTG 59.336 37.037 10.07 4.71 0.00 3.16
1410 4414 8.677300 CATTCCCCATCCATAAATATTTACGAG 58.323 37.037 10.07 4.08 0.00 4.18
1411 4415 7.613801 CCATTCCCCATCCATAAATATTTACGA 59.386 37.037 10.07 9.17 0.00 3.43
1438 4464 3.626924 GTGCCCGTGGACTCCAGT 61.627 66.667 0.00 0.00 32.34 4.00
1439 4465 3.596066 CTGTGCCCGTGGACTCCAG 62.596 68.421 0.00 0.00 32.34 3.86
1440 4466 3.625897 CTGTGCCCGTGGACTCCA 61.626 66.667 0.00 0.00 0.00 3.86
1441 4467 1.327690 TATCTGTGCCCGTGGACTCC 61.328 60.000 0.00 0.00 0.00 3.85
1442 4468 0.179108 GTATCTGTGCCCGTGGACTC 60.179 60.000 0.00 0.00 0.00 3.36
1463 4491 1.779061 ATGGTTGGGTGGCGTTCTCT 61.779 55.000 0.00 0.00 0.00 3.10
1474 4502 4.335416 CAATGTATAGGGCTATGGTTGGG 58.665 47.826 0.00 0.00 0.00 4.12
1505 4534 6.464895 TTGCATGAATTTCATCCGTTTTTC 57.535 33.333 8.95 0.00 34.28 2.29
1506 4535 6.293353 GGTTTGCATGAATTTCATCCGTTTTT 60.293 34.615 8.95 0.00 34.28 1.94
1612 5731 5.169295 GTCATCCGATATAGGGTTTAGTGC 58.831 45.833 1.64 0.00 0.00 4.40
1691 5815 3.021695 AGGGACAACGATGACGAAGATA 58.978 45.455 0.00 0.00 42.66 1.98
1692 5816 1.825474 AGGGACAACGATGACGAAGAT 59.175 47.619 0.00 0.00 42.66 2.40
1824 5955 1.609208 CACCAGCACCTTTAGCAGTT 58.391 50.000 0.00 0.00 0.00 3.16
1926 6089 3.573491 GCCGCCAATGCTACCGTC 61.573 66.667 0.00 0.00 34.43 4.79
1927 6090 4.402528 TGCCGCCAATGCTACCGT 62.403 61.111 0.00 0.00 34.43 4.83
1928 6091 3.576356 CTGCCGCCAATGCTACCG 61.576 66.667 0.00 0.00 34.43 4.02
1929 6092 3.892581 GCTGCCGCCAATGCTACC 61.893 66.667 0.00 0.00 34.43 3.18
1930 6093 4.241999 CGCTGCCGCCAATGCTAC 62.242 66.667 0.00 0.00 34.43 3.58
2026 6201 3.454573 AGACGTGGCGCCGGAATA 61.455 61.111 23.90 0.00 0.00 1.75
2112 6289 0.758734 CCATGGTATCCGAGGCTGAA 59.241 55.000 2.57 0.00 0.00 3.02
2159 6336 1.452651 CACTACCTCGGAGGCGGTA 60.453 63.158 23.84 9.03 39.63 4.02
2337 6529 2.659610 GTGAAGCAGGAGCCGACT 59.340 61.111 0.00 0.00 43.56 4.18
2399 6592 1.004044 CTCCAGCAGGTGAAGGACAAT 59.996 52.381 0.00 0.00 35.89 2.71
2496 6690 0.837691 TGTCAGATGGGTCCAGTGCT 60.838 55.000 0.00 0.00 0.00 4.40
2535 6729 2.815647 CTTCACGAAGGCGGCTCC 60.816 66.667 13.70 0.00 43.17 4.70
2625 6873 3.740128 GAGCCGCATCCACGATGGT 62.740 63.158 3.94 0.00 40.10 3.55
2628 6876 4.592192 CCGAGCCGCATCCACGAT 62.592 66.667 0.00 0.00 34.06 3.73
2759 7008 1.203364 TCCTCCTCTCTGAGCCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
2781 7032 2.045926 GAGCACCGCACCATCCTT 60.046 61.111 0.00 0.00 0.00 3.36
2866 7137 0.532862 CAACTCTGACCGTTGTGCCT 60.533 55.000 2.56 0.00 37.54 4.75
2879 7150 1.275573 GCGTCCCTAGAAACCAACTCT 59.724 52.381 0.00 0.00 0.00 3.24
2967 7238 0.744414 ACATTGATCCCGCGACTTGG 60.744 55.000 8.23 0.00 0.00 3.61
2978 7249 2.247437 GGAGCGGCCGACATTGATC 61.247 63.158 33.48 13.41 0.00 2.92
3019 7290 1.069022 GTCGTGTAGCTTACCACGTCA 60.069 52.381 23.61 10.24 41.23 4.35
3024 7295 0.528924 ATGCGTCGTGTAGCTTACCA 59.471 50.000 0.00 0.00 0.00 3.25
3033 7304 0.321210 TTCCATCCAATGCGTCGTGT 60.321 50.000 0.00 0.00 0.00 4.49
3085 7356 0.605589 CTCTTCTGACCGTCTTGGCT 59.394 55.000 0.00 0.00 43.94 4.75
3116 7387 0.543749 GGCTGCCTATGTCAAGGTCT 59.456 55.000 12.43 0.00 39.02 3.85
3118 7389 0.254178 CAGGCTGCCTATGTCAAGGT 59.746 55.000 22.90 0.00 39.02 3.50
3120 7391 1.099879 GCCAGGCTGCCTATGTCAAG 61.100 60.000 22.90 6.93 29.64 3.02
3121 7392 1.077501 GCCAGGCTGCCTATGTCAA 60.078 57.895 22.90 0.00 29.64 3.18
3122 7393 2.591753 GCCAGGCTGCCTATGTCA 59.408 61.111 22.90 0.00 29.64 3.58
3140 7411 4.430765 CAAGGTCGGTCGGGTCGG 62.431 72.222 0.00 0.00 0.00 4.79
3141 7412 3.621892 GACAAGGTCGGTCGGGTCG 62.622 68.421 0.00 0.00 0.00 4.79
3142 7413 2.260743 GACAAGGTCGGTCGGGTC 59.739 66.667 0.00 0.00 0.00 4.46
3143 7414 3.308705 GGACAAGGTCGGTCGGGT 61.309 66.667 0.00 0.00 36.12 5.28
3144 7415 3.307906 TGGACAAGGTCGGTCGGG 61.308 66.667 0.00 0.00 36.12 5.14
3145 7416 2.048503 GTGGACAAGGTCGGTCGG 60.049 66.667 0.00 0.00 36.12 4.79
3146 7417 2.430244 CGTGGACAAGGTCGGTCG 60.430 66.667 0.00 0.00 36.12 4.79
3147 7418 2.048503 CCGTGGACAAGGTCGGTC 60.049 66.667 0.00 0.00 38.45 4.79
3148 7419 3.622826 CCCGTGGACAAGGTCGGT 61.623 66.667 3.69 0.00 41.17 4.69
3170 7441 1.587547 CTTGAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
3171 7442 1.587547 GCTTGAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
3172 7443 0.180406 GGCTTGAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 38.07 5.14
3173 7444 2.707902 GGCTTGAAATCTAGGCCCG 58.292 57.895 0.00 0.00 38.07 6.13
3176 7447 1.876156 CATCGGGCTTGAAATCTAGGC 59.124 52.381 9.36 9.36 41.89 3.93
3177 7448 2.104792 TCCATCGGGCTTGAAATCTAGG 59.895 50.000 0.00 0.00 0.00 3.02
3178 7449 3.475566 TCCATCGGGCTTGAAATCTAG 57.524 47.619 0.00 0.00 0.00 2.43
3179 7450 3.496692 CCATCCATCGGGCTTGAAATCTA 60.497 47.826 0.00 0.00 0.00 1.98
3180 7451 2.579873 CATCCATCGGGCTTGAAATCT 58.420 47.619 0.00 0.00 0.00 2.40
3181 7452 1.610522 CCATCCATCGGGCTTGAAATC 59.389 52.381 0.00 0.00 0.00 2.17
3182 7453 1.696063 CCATCCATCGGGCTTGAAAT 58.304 50.000 0.00 0.00 0.00 2.17
3183 7454 0.395586 CCCATCCATCGGGCTTGAAA 60.396 55.000 0.00 0.00 36.72 2.69
3184 7455 1.227102 CCCATCCATCGGGCTTGAA 59.773 57.895 0.00 0.00 36.72 2.69
3185 7456 2.918248 CCCATCCATCGGGCTTGA 59.082 61.111 0.00 0.00 36.72 3.02
3207 7478 4.176752 GATGGGACCGGGTCTGGC 62.177 72.222 25.39 10.00 32.47 4.85
3208 7479 0.762842 TATGATGGGACCGGGTCTGG 60.763 60.000 25.39 0.00 32.47 3.86
3209 7480 1.352083 ATATGATGGGACCGGGTCTG 58.648 55.000 25.39 0.00 32.47 3.51
3210 7481 2.106511 CAAATATGATGGGACCGGGTCT 59.893 50.000 25.39 7.14 32.47 3.85
3211 7482 2.504367 CAAATATGATGGGACCGGGTC 58.496 52.381 19.06 19.06 0.00 4.46
3212 7483 1.478654 GCAAATATGATGGGACCGGGT 60.479 52.381 6.32 0.00 0.00 5.28
3213 7484 1.247567 GCAAATATGATGGGACCGGG 58.752 55.000 6.32 0.00 0.00 5.73
3214 7485 0.874390 CGCAAATATGATGGGACCGG 59.126 55.000 0.00 0.00 32.93 5.28
3215 7486 1.264020 CACGCAAATATGATGGGACCG 59.736 52.381 11.36 0.78 35.02 4.79
3216 7487 2.297701 ACACGCAAATATGATGGGACC 58.702 47.619 11.36 0.00 35.02 4.46
3217 7488 5.270853 GTTAACACGCAAATATGATGGGAC 58.729 41.667 11.36 0.00 35.02 4.46
3218 7489 4.034626 CGTTAACACGCAAATATGATGGGA 59.965 41.667 6.39 0.00 40.18 4.37
3219 7490 4.034626 TCGTTAACACGCAAATATGATGGG 59.965 41.667 6.39 4.79 46.70 4.00
3220 7491 5.150342 TCGTTAACACGCAAATATGATGG 57.850 39.130 6.39 0.00 46.70 3.51
3221 7492 6.474364 TCTTCGTTAACACGCAAATATGATG 58.526 36.000 6.39 0.00 46.70 3.07
3222 7493 6.238103 CCTCTTCGTTAACACGCAAATATGAT 60.238 38.462 6.39 0.00 46.70 2.45
3223 7494 5.062934 CCTCTTCGTTAACACGCAAATATGA 59.937 40.000 6.39 0.00 46.70 2.15
3224 7495 5.255596 CCTCTTCGTTAACACGCAAATATG 58.744 41.667 6.39 0.00 46.70 1.78
3225 7496 4.201783 GCCTCTTCGTTAACACGCAAATAT 60.202 41.667 6.39 0.00 46.70 1.28
3226 7497 3.123959 GCCTCTTCGTTAACACGCAAATA 59.876 43.478 6.39 0.00 46.70 1.40
3227 7498 2.095919 GCCTCTTCGTTAACACGCAAAT 60.096 45.455 6.39 0.00 46.70 2.32
3228 7499 1.262151 GCCTCTTCGTTAACACGCAAA 59.738 47.619 6.39 0.00 46.70 3.68
3229 7500 0.863144 GCCTCTTCGTTAACACGCAA 59.137 50.000 6.39 0.00 46.70 4.85
3230 7501 0.947180 GGCCTCTTCGTTAACACGCA 60.947 55.000 6.39 0.00 46.70 5.24
3231 7502 0.669625 AGGCCTCTTCGTTAACACGC 60.670 55.000 0.00 0.00 46.70 5.34
3233 7504 1.270678 ACCAGGCCTCTTCGTTAACAC 60.271 52.381 0.00 0.00 0.00 3.32
3234 7505 1.053424 ACCAGGCCTCTTCGTTAACA 58.947 50.000 0.00 0.00 0.00 2.41
3235 7506 2.180432 AACCAGGCCTCTTCGTTAAC 57.820 50.000 0.00 0.00 0.00 2.01
3236 7507 2.105134 TCAAACCAGGCCTCTTCGTTAA 59.895 45.455 0.00 0.00 0.00 2.01
3237 7508 1.695242 TCAAACCAGGCCTCTTCGTTA 59.305 47.619 0.00 0.00 0.00 3.18
3238 7509 0.472471 TCAAACCAGGCCTCTTCGTT 59.528 50.000 0.00 0.00 0.00 3.85
3239 7510 0.035458 CTCAAACCAGGCCTCTTCGT 59.965 55.000 0.00 0.00 0.00 3.85
3240 7511 0.674895 CCTCAAACCAGGCCTCTTCG 60.675 60.000 0.00 0.00 0.00 3.79
3241 7512 3.256281 CCTCAAACCAGGCCTCTTC 57.744 57.895 0.00 0.00 0.00 2.87
3248 7519 1.609783 CCTAGGGCCTCAAACCAGG 59.390 63.158 10.74 6.31 36.50 4.45
3249 7520 1.077429 GCCTAGGGCCTCAAACCAG 60.077 63.158 10.74 0.00 44.06 4.00
3250 7521 3.087065 GCCTAGGGCCTCAAACCA 58.913 61.111 10.74 0.00 44.06 3.67
3268 7539 2.828549 ATGCTAAAAGCCCGCCGG 60.829 61.111 0.00 0.00 41.51 6.13
3269 7540 1.447317 ATCATGCTAAAAGCCCGCCG 61.447 55.000 0.00 0.00 41.51 6.46
3270 7541 0.031178 CATCATGCTAAAAGCCCGCC 59.969 55.000 0.00 0.00 41.51 6.13
3271 7542 0.031178 CCATCATGCTAAAAGCCCGC 59.969 55.000 0.00 0.00 41.51 6.13
3272 7543 0.670162 CCCATCATGCTAAAAGCCCG 59.330 55.000 0.00 0.00 41.51 6.13
3273 7544 0.390492 GCCCATCATGCTAAAAGCCC 59.610 55.000 0.00 0.00 41.51 5.19
3274 7545 0.031178 CGCCCATCATGCTAAAAGCC 59.969 55.000 0.00 0.00 41.51 4.35
3275 7546 0.031178 CCGCCCATCATGCTAAAAGC 59.969 55.000 0.00 0.00 42.82 3.51
3276 7547 0.670162 CCCGCCCATCATGCTAAAAG 59.330 55.000 0.00 0.00 0.00 2.27
3277 7548 0.754957 CCCCGCCCATCATGCTAAAA 60.755 55.000 0.00 0.00 0.00 1.52
3278 7549 1.152777 CCCCGCCCATCATGCTAAA 60.153 57.895 0.00 0.00 0.00 1.85
3279 7550 2.515398 CCCCGCCCATCATGCTAA 59.485 61.111 0.00 0.00 0.00 3.09
3280 7551 4.269523 GCCCCGCCCATCATGCTA 62.270 66.667 0.00 0.00 0.00 3.49
3296 7567 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
3310 7581 0.755686 ACCAAAGCCCGATGCAAAAA 59.244 45.000 0.00 0.00 44.83 1.94
3311 7582 1.543802 CTACCAAAGCCCGATGCAAAA 59.456 47.619 0.00 0.00 44.83 2.44
3312 7583 1.173043 CTACCAAAGCCCGATGCAAA 58.827 50.000 0.00 0.00 44.83 3.68
3313 7584 0.679640 CCTACCAAAGCCCGATGCAA 60.680 55.000 0.00 0.00 44.83 4.08
3314 7585 1.077787 CCTACCAAAGCCCGATGCA 60.078 57.895 0.00 0.00 44.83 3.96
3315 7586 2.481471 GCCTACCAAAGCCCGATGC 61.481 63.158 0.00 0.00 41.71 3.91
3316 7587 1.823899 GGCCTACCAAAGCCCGATG 60.824 63.158 0.00 0.00 43.76 3.84
3317 7588 2.595655 GGCCTACCAAAGCCCGAT 59.404 61.111 0.00 0.00 43.76 4.18
3351 7622 4.838152 CACCATCTGTCGGGCCGG 62.838 72.222 27.98 10.57 0.00 6.13
3352 7623 4.838152 CCACCATCTGTCGGGCCG 62.838 72.222 22.51 22.51 0.00 6.13
3353 7624 4.489771 CCCACCATCTGTCGGGCC 62.490 72.222 0.00 0.00 31.40 5.80
3354 7625 4.489771 CCCCACCATCTGTCGGGC 62.490 72.222 0.00 0.00 38.67 6.13
3356 7627 1.695114 TATGCCCCACCATCTGTCGG 61.695 60.000 0.00 0.00 0.00 4.79
3357 7628 0.532862 GTATGCCCCACCATCTGTCG 60.533 60.000 0.00 0.00 0.00 4.35
3358 7629 0.839946 AGTATGCCCCACCATCTGTC 59.160 55.000 0.00 0.00 0.00 3.51
3359 7630 1.064463 CAAGTATGCCCCACCATCTGT 60.064 52.381 0.00 0.00 0.00 3.41
3360 7631 1.064463 ACAAGTATGCCCCACCATCTG 60.064 52.381 0.00 0.00 0.00 2.90
3361 7632 1.064463 CACAAGTATGCCCCACCATCT 60.064 52.381 0.00 0.00 0.00 2.90
3362 7633 1.064758 TCACAAGTATGCCCCACCATC 60.065 52.381 0.00 0.00 0.00 3.51
3363 7634 0.998928 TCACAAGTATGCCCCACCAT 59.001 50.000 0.00 0.00 0.00 3.55
3364 7635 0.327924 CTCACAAGTATGCCCCACCA 59.672 55.000 0.00 0.00 0.00 4.17
3365 7636 1.032114 GCTCACAAGTATGCCCCACC 61.032 60.000 0.00 0.00 0.00 4.61
3366 7637 1.369091 CGCTCACAAGTATGCCCCAC 61.369 60.000 0.00 0.00 0.00 4.61
3367 7638 1.078497 CGCTCACAAGTATGCCCCA 60.078 57.895 0.00 0.00 0.00 4.96
3368 7639 1.819632 CCGCTCACAAGTATGCCCC 60.820 63.158 0.00 0.00 0.00 5.80
3369 7640 1.078426 ACCGCTCACAAGTATGCCC 60.078 57.895 0.00 0.00 0.00 5.36
3370 7641 1.090052 GGACCGCTCACAAGTATGCC 61.090 60.000 0.00 0.00 0.00 4.40
3371 7642 0.391130 TGGACCGCTCACAAGTATGC 60.391 55.000 0.00 0.00 0.00 3.14
3372 7643 1.204704 TCTGGACCGCTCACAAGTATG 59.795 52.381 0.00 0.00 0.00 2.39
3373 7644 1.204941 GTCTGGACCGCTCACAAGTAT 59.795 52.381 0.00 0.00 0.00 2.12
3374 7645 0.601558 GTCTGGACCGCTCACAAGTA 59.398 55.000 0.00 0.00 0.00 2.24
3375 7646 1.115930 AGTCTGGACCGCTCACAAGT 61.116 55.000 0.00 0.00 0.00 3.16
3376 7647 0.389166 GAGTCTGGACCGCTCACAAG 60.389 60.000 5.87 0.00 0.00 3.16
3377 7648 1.666011 GAGTCTGGACCGCTCACAA 59.334 57.895 5.87 0.00 0.00 3.33
3378 7649 2.276116 GGAGTCTGGACCGCTCACA 61.276 63.158 11.14 0.00 0.00 3.58
3379 7650 2.574399 GGAGTCTGGACCGCTCAC 59.426 66.667 11.14 0.00 0.00 3.51
3380 7651 2.680352 GGGAGTCTGGACCGCTCA 60.680 66.667 11.14 0.00 0.00 4.26
3390 7661 4.035102 GGGGCTTTGCGGGAGTCT 62.035 66.667 0.00 0.00 0.00 3.24
3449 7720 2.655364 CTGTATCGGTCTGCGGCG 60.655 66.667 0.51 0.51 0.00 6.46
3452 7723 0.248661 CTGGTCTGTATCGGTCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
3454 7725 0.248661 CGCTGGTCTGTATCGGTCTG 60.249 60.000 0.00 0.00 0.00 3.51
3460 7731 2.205074 CATCCAACGCTGGTCTGTATC 58.795 52.381 4.46 0.00 43.97 2.24
3467 7738 1.675641 GAAGCCATCCAACGCTGGT 60.676 57.895 4.46 0.00 43.97 4.00
3516 7787 1.535833 AGTCATCTCCAACGTCGACT 58.464 50.000 14.70 0.00 0.00 4.18
3520 7791 9.915629 AATCTATATAAAGTCATCTCCAACGTC 57.084 33.333 0.00 0.00 0.00 4.34
3611 8671 7.026562 TGATTCAGGTTATGTAAAATTGTGCG 58.973 34.615 0.00 0.00 0.00 5.34
3624 8684 8.207545 GGACTAGTTCAATCTGATTCAGGTTAT 58.792 37.037 11.75 2.33 31.84 1.89
3630 8690 6.166279 GTGTGGACTAGTTCAATCTGATTCA 58.834 40.000 5.12 0.00 0.00 2.57
3678 8755 6.145535 GCTAGGATTTGTTTTCAGTTGTGAG 58.854 40.000 0.00 0.00 32.98 3.51
3679 8756 5.592282 TGCTAGGATTTGTTTTCAGTTGTGA 59.408 36.000 0.00 0.00 0.00 3.58
3680 8757 5.830912 TGCTAGGATTTGTTTTCAGTTGTG 58.169 37.500 0.00 0.00 0.00 3.33
3681 8758 6.096846 ACTTGCTAGGATTTGTTTTCAGTTGT 59.903 34.615 0.00 0.00 0.00 3.32
3682 8759 6.507023 ACTTGCTAGGATTTGTTTTCAGTTG 58.493 36.000 0.00 0.00 0.00 3.16
3683 8760 6.715347 ACTTGCTAGGATTTGTTTTCAGTT 57.285 33.333 0.00 0.00 0.00 3.16
3684 8761 7.665559 TGATACTTGCTAGGATTTGTTTTCAGT 59.334 33.333 0.00 0.00 0.00 3.41
3685 8762 8.044060 TGATACTTGCTAGGATTTGTTTTCAG 57.956 34.615 0.00 0.00 0.00 3.02
3686 8763 7.994425 TGATACTTGCTAGGATTTGTTTTCA 57.006 32.000 0.00 0.00 0.00 2.69
3687 8764 9.860898 AAATGATACTTGCTAGGATTTGTTTTC 57.139 29.630 0.00 0.00 0.00 2.29
3690 8767 9.905713 TCTAAATGATACTTGCTAGGATTTGTT 57.094 29.630 0.00 0.00 0.00 2.83
3691 8768 9.905713 TTCTAAATGATACTTGCTAGGATTTGT 57.094 29.630 0.00 0.00 0.00 2.83
3695 8772 9.553064 CAACTTCTAAATGATACTTGCTAGGAT 57.447 33.333 0.00 0.00 0.00 3.24
3696 8773 8.758829 TCAACTTCTAAATGATACTTGCTAGGA 58.241 33.333 0.00 0.00 0.00 2.94
3697 8774 8.948631 TCAACTTCTAAATGATACTTGCTAGG 57.051 34.615 0.00 0.00 0.00 3.02
3699 8776 9.944376 ACTTCAACTTCTAAATGATACTTGCTA 57.056 29.630 0.00 0.00 0.00 3.49
3700 8777 8.854614 ACTTCAACTTCTAAATGATACTTGCT 57.145 30.769 0.00 0.00 0.00 3.91
3701 8778 9.548208 GAACTTCAACTTCTAAATGATACTTGC 57.452 33.333 0.00 0.00 0.00 4.01
3708 8785 9.477484 GACTGTAGAACTTCAACTTCTAAATGA 57.523 33.333 0.00 0.00 33.09 2.57
3709 8786 9.482627 AGACTGTAGAACTTCAACTTCTAAATG 57.517 33.333 0.00 0.00 33.09 2.32
3710 8787 9.482627 CAGACTGTAGAACTTCAACTTCTAAAT 57.517 33.333 0.00 0.00 33.09 1.40
3711 8788 7.926555 CCAGACTGTAGAACTTCAACTTCTAAA 59.073 37.037 0.93 0.00 33.09 1.85
3712 8789 7.287005 TCCAGACTGTAGAACTTCAACTTCTAA 59.713 37.037 0.93 0.00 33.09 2.10
3713 8790 6.776116 TCCAGACTGTAGAACTTCAACTTCTA 59.224 38.462 0.93 0.00 0.00 2.10
3714 8791 5.598830 TCCAGACTGTAGAACTTCAACTTCT 59.401 40.000 0.93 0.00 0.00 2.85
3715 8792 5.844004 TCCAGACTGTAGAACTTCAACTTC 58.156 41.667 0.93 0.00 0.00 3.01
3716 8793 5.871396 TCCAGACTGTAGAACTTCAACTT 57.129 39.130 0.93 0.00 0.00 2.66
3717 8794 5.221541 CCTTCCAGACTGTAGAACTTCAACT 60.222 44.000 0.93 0.00 0.00 3.16
3718 8795 4.991687 CCTTCCAGACTGTAGAACTTCAAC 59.008 45.833 0.93 0.00 0.00 3.18
3719 8796 4.503296 GCCTTCCAGACTGTAGAACTTCAA 60.503 45.833 0.93 0.00 0.00 2.69
3736 8813 3.013219 CTCTTTCCTTTGCTAGCCTTCC 58.987 50.000 13.29 0.00 0.00 3.46
3855 8932 7.120873 CCAAATCCATTTATAGATGCTCTGAGG 59.879 40.741 6.83 0.00 0.00 3.86
3869 8946 5.104982 GGGTCAGATTTGCCAAATCCATTTA 60.105 40.000 23.08 5.29 46.65 1.40
3873 8950 2.178580 GGGTCAGATTTGCCAAATCCA 58.821 47.619 23.08 10.24 46.65 3.41
3903 8984 4.246206 CGACGGGCGCGTCTATGA 62.246 66.667 40.84 0.00 36.81 2.15
3926 9007 4.865629 TGATCGGTCACTGTCCCT 57.134 55.556 0.00 0.00 0.00 4.20
3940 9021 5.593909 TGGAATGAATTATTTGAGGCGTGAT 59.406 36.000 0.00 0.00 0.00 3.06
3950 9031 7.228706 GGTATCCGTCTGTGGAATGAATTATTT 59.771 37.037 0.00 0.00 42.46 1.40
3957 9038 2.693591 GAGGTATCCGTCTGTGGAATGA 59.306 50.000 0.00 0.00 42.46 2.57
4001 9096 5.114081 GCTCCGCTTAAGATTAGGTTTACA 58.886 41.667 6.67 0.00 0.00 2.41
4032 9127 2.032681 AGAAGGGCACGGTGAAGC 59.967 61.111 13.29 0.00 0.00 3.86
4071 9166 1.080705 CGACCGGACCAACACTCTC 60.081 63.158 9.46 0.00 0.00 3.20
4119 9214 2.174685 TAAGTCCCATGAGCTGGCTA 57.825 50.000 0.00 0.00 44.46 3.93
4128 9223 1.098050 GCAGTGCCTTAAGTCCCATG 58.902 55.000 2.85 0.00 0.00 3.66
4143 9238 2.599597 GGCATGGGAGATGGCAGT 59.400 61.111 0.00 0.00 43.15 4.40
4145 9240 1.385773 TAGGGCATGGGAGATGGCA 60.386 57.895 10.03 0.00 45.13 4.92
4149 9244 2.334023 GAAGAGTAGGGCATGGGAGAT 58.666 52.381 0.00 0.00 0.00 2.75
4198 9293 0.175760 ATCAATCTGACGTCCACCGG 59.824 55.000 14.12 0.00 42.24 5.28
4703 9798 1.068679 TCGCAAACATGGTACGACGTA 60.069 47.619 2.97 2.97 0.00 3.57
4711 9806 2.314647 CGTCGGTCGCAAACATGGT 61.315 57.895 0.00 0.00 0.00 3.55
4798 9894 2.662596 GGTGCGGTCCATCTGTCA 59.337 61.111 0.00 0.00 0.00 3.58
4910 10041 4.779733 AGGAGGCCACCCGACGAT 62.780 66.667 16.55 0.00 35.76 3.73
5000 10131 1.062810 AGTCCTACACCTCCAGATCCC 60.063 57.143 0.00 0.00 0.00 3.85
5082 10229 1.694150 CACTTCACTTCACTCCCCTCA 59.306 52.381 0.00 0.00 0.00 3.86
5251 10404 0.106335 TCAAACGGGCCTCAAACGTA 59.894 50.000 0.84 0.00 40.31 3.57
5377 10530 7.839680 AAAAGGGATGTATGTTGAGAAAAGT 57.160 32.000 0.00 0.00 0.00 2.66
5476 10629 3.381590 AGTCAAGGAAAAAGCAACCTCAC 59.618 43.478 0.00 0.00 33.16 3.51
5570 10723 4.034285 ACCACTTAGGAATTTCCACTGG 57.966 45.455 17.57 15.74 39.61 4.00
5580 10733 8.057011 GGGAAATAGGATTAAACCACTTAGGAA 58.943 37.037 4.40 0.00 41.22 3.36
5633 10786 6.274157 ACGCTCTAATGGGTATGAGATAAG 57.726 41.667 0.00 0.00 0.00 1.73
5653 10806 1.439679 CAACCTTCACCCTTCTACGC 58.560 55.000 0.00 0.00 0.00 4.42
5662 10815 0.035915 GGAGGAGAGCAACCTTCACC 60.036 60.000 0.00 0.00 37.93 4.02
5663 10816 0.035915 GGGAGGAGAGCAACCTTCAC 60.036 60.000 0.00 0.00 37.93 3.18
5725 10878 1.421268 TGTTCTTCATCCAGTGGTGCT 59.579 47.619 9.54 0.00 0.00 4.40
5875 12023 7.846644 TTCTTTAGGAACGTGTCTAAACAAA 57.153 32.000 15.34 11.49 37.08 2.83
5910 12058 2.945278 TCACAATGAATTTTGCTCCGC 58.055 42.857 0.00 0.00 0.00 5.54
6342 12496 7.739444 TCAATACTAGGGAATGTTAGGATGGAT 59.261 37.037 0.00 0.00 0.00 3.41
6401 12563 2.165437 TGCTTTTAATGGGCGGATTCAC 59.835 45.455 0.00 0.00 0.00 3.18
6469 12633 7.638295 CGCTTTAGAAATTTGGTTTTCAAAACC 59.362 33.333 23.28 23.28 46.93 3.27
6746 12918 9.988350 GAGCTCGATATTTTTCAAAAGTCATAA 57.012 29.630 0.00 0.00 0.00 1.90
6797 12969 3.464828 AGGATATAGGATGGGCGGAAAT 58.535 45.455 0.00 0.00 0.00 2.17
6944 13117 3.367678 TGCATGGTAGCATGTCGAG 57.632 52.632 29.91 10.22 40.11 4.04
7061 13234 6.814644 ACATATTGCAATGAGATTTGGTTGTG 59.185 34.615 22.27 3.03 0.00 3.33
7085 13258 3.735746 GCTACATGAACTGGTTGCAAAAC 59.264 43.478 0.00 0.00 36.12 2.43
7102 13275 2.172679 TGATACCCGTCTGTTGCTACA 58.827 47.619 0.03 0.03 0.00 2.74
7130 13304 6.978343 TGAAACAACCTCCAATACTATTCG 57.022 37.500 0.00 0.00 0.00 3.34
7198 13376 7.202130 CCATCTAAATGATAGACTCTTTGGGGA 60.202 40.741 0.00 0.00 34.61 4.81
7371 13564 9.748708 TGCAGTATTCCATCAATTAAATTTAGC 57.251 29.630 0.00 0.00 0.00 3.09
7456 13657 5.424252 ACGGAGGGAGTACATAATTCAAGAA 59.576 40.000 0.00 0.00 0.00 2.52
7633 13838 5.056894 AGAGTGAAAATTGAGCTTCATGC 57.943 39.130 0.00 0.00 43.29 4.06
7677 13883 9.823647 TGGAACAACAACAACAAATATGTTATT 57.176 25.926 0.00 0.00 41.65 1.40
7679 13885 8.635877 GTGGAACAACAACAACAAATATGTTA 57.364 30.769 0.00 0.00 44.90 2.41
7680 13886 7.532682 GTGGAACAACAACAACAAATATGTT 57.467 32.000 0.00 0.00 46.82 2.71
7716 13922 6.916360 AATATTACATTGGCCCAATACCAG 57.084 37.500 9.03 0.00 38.73 4.00
7940 14341 6.423776 AAAAGAGGGAAATCAATTTCAGCA 57.576 33.333 15.35 0.00 46.03 4.41
7941 14342 8.876790 CATAAAAAGAGGGAAATCAATTTCAGC 58.123 33.333 15.35 5.85 46.03 4.26
8124 14561 9.703892 TCTTTGTCACATATTAAACAAAATGGG 57.296 29.630 3.30 0.00 40.10 4.00
8151 14588 4.476628 ACCTTACAACCTATAACCGTGG 57.523 45.455 0.00 0.00 0.00 4.94
8153 14590 7.679783 ACTTAAACCTTACAACCTATAACCGT 58.320 34.615 0.00 0.00 0.00 4.83
8154 14591 9.651913 TTACTTAAACCTTACAACCTATAACCG 57.348 33.333 0.00 0.00 0.00 4.44
8269 14707 6.627087 AATGAGAGAACCCTACAGAATTGA 57.373 37.500 0.00 0.00 0.00 2.57
8322 14760 1.444119 TTGCACAGTTCGCCAACTCC 61.444 55.000 0.00 0.00 41.24 3.85
8336 14774 7.227314 TCCTCATGTCATACTCAATTATTGCAC 59.773 37.037 0.00 0.00 0.00 4.57
8414 14852 5.940192 TGTGCTCGTGATGTAAAAATCTT 57.060 34.783 0.00 0.00 0.00 2.40
8418 14856 4.068599 TCCATGTGCTCGTGATGTAAAAA 58.931 39.130 9.53 0.00 32.78 1.94
8423 14861 2.283298 GATTCCATGTGCTCGTGATGT 58.717 47.619 9.53 0.00 32.78 3.06
8470 14908 2.203153 GACCGCACCACCACAGTT 60.203 61.111 0.00 0.00 0.00 3.16
8489 14927 4.154737 TGTGAAGACATGCTAAAGTCATGC 59.845 41.667 11.71 7.16 43.71 4.06
8613 15051 2.157834 TAACGACGCCATCAAACAGT 57.842 45.000 0.00 0.00 0.00 3.55
8659 15097 3.009723 ACATCTTCATTACCGCAACCAG 58.990 45.455 0.00 0.00 0.00 4.00
8848 15288 0.515564 CCGACAAACAACCTTAGCCG 59.484 55.000 0.00 0.00 0.00 5.52
8859 15299 1.523934 CACAAGTACGGTCCGACAAAC 59.476 52.381 20.51 10.20 0.00 2.93
8861 15301 0.746063 ACACAAGTACGGTCCGACAA 59.254 50.000 20.51 0.00 0.00 3.18
8908 15349 3.007614 ACTCCACATTGCCTAAGTACGTT 59.992 43.478 0.00 0.00 0.00 3.99
8911 15352 4.202245 TGACTCCACATTGCCTAAGTAC 57.798 45.455 0.00 0.00 0.00 2.73
8912 15353 4.384098 CCATGACTCCACATTGCCTAAGTA 60.384 45.833 0.00 0.00 0.00 2.24
8971 15412 8.439971 TCAGCATCTGGACCAAATATTTAGTAT 58.560 33.333 0.00 0.00 31.51 2.12
8990 15431 8.680903 TCTTAAAAGGAAAGATTCATCAGCATC 58.319 33.333 0.00 0.00 0.00 3.91
9125 15566 9.783081 CACCATATATATAGCATAAGCAATGGA 57.217 33.333 9.70 0.00 45.49 3.41
9143 15584 9.975218 TTCTAGAGACATAGCATACACCATATA 57.025 33.333 0.00 0.00 0.00 0.86
9144 15585 8.885693 TTCTAGAGACATAGCATACACCATAT 57.114 34.615 0.00 0.00 0.00 1.78
9145 15586 8.885693 ATTCTAGAGACATAGCATACACCATA 57.114 34.615 0.00 0.00 0.00 2.74
9146 15587 7.789202 ATTCTAGAGACATAGCATACACCAT 57.211 36.000 0.00 0.00 0.00 3.55
9147 15588 8.885693 ATATTCTAGAGACATAGCATACACCA 57.114 34.615 0.00 0.00 0.00 4.17
9148 15589 9.579768 CAATATTCTAGAGACATAGCATACACC 57.420 37.037 0.00 0.00 0.00 4.16
9154 15595 9.212641 GCAAATCAATATTCTAGAGACATAGCA 57.787 33.333 0.00 0.00 0.00 3.49
9155 15596 9.212641 TGCAAATCAATATTCTAGAGACATAGC 57.787 33.333 0.00 0.00 0.00 2.97
9158 15599 9.788889 TCATGCAAATCAATATTCTAGAGACAT 57.211 29.630 0.00 0.00 0.00 3.06
9159 15600 9.788889 ATCATGCAAATCAATATTCTAGAGACA 57.211 29.630 0.00 0.00 0.00 3.41
9207 15648 4.168101 AGTCTACACCCAATTTCCTCTCA 58.832 43.478 0.00 0.00 0.00 3.27
9321 15762 1.004277 GGGGAGTGGCATCAACAACTA 59.996 52.381 0.00 0.00 0.00 2.24
9324 15765 0.539438 GTGGGGAGTGGCATCAACAA 60.539 55.000 0.00 0.00 0.00 2.83
9325 15766 1.074775 GTGGGGAGTGGCATCAACA 59.925 57.895 0.00 0.00 0.00 3.33
9328 15769 4.408821 GCGTGGGGAGTGGCATCA 62.409 66.667 0.00 0.00 0.00 3.07
9397 15841 1.702401 TGCCTCCAAAGTATCCACACA 59.298 47.619 0.00 0.00 0.00 3.72
9408 15852 1.403647 CGTAGACGTGATGCCTCCAAA 60.404 52.381 0.00 0.00 34.11 3.28
9458 15902 1.332375 GATCCCTCGAACAGTCTCTCG 59.668 57.143 0.00 0.00 36.39 4.04
9462 15906 0.323542 ACGGATCCCTCGAACAGTCT 60.324 55.000 6.06 0.00 0.00 3.24
9463 15907 0.179134 CACGGATCCCTCGAACAGTC 60.179 60.000 6.06 0.00 0.00 3.51
9481 15925 3.095912 TCTCCCGTGAATAGTTCCTCA 57.904 47.619 0.00 0.00 0.00 3.86
9483 15927 2.623889 CGATCTCCCGTGAATAGTTCCT 59.376 50.000 0.00 0.00 0.00 3.36
9485 15929 3.315749 AGACGATCTCCCGTGAATAGTTC 59.684 47.826 0.00 0.00 43.49 3.01
9494 15949 1.743958 CTTGTGTAGACGATCTCCCGT 59.256 52.381 0.00 0.00 46.43 5.28
9524 15979 1.403647 CGTGTAACCAATCAGCGGAGA 60.404 52.381 0.00 0.00 0.00 3.71
9587 16042 0.903924 TCACGGGATCGGGTTTACCA 60.904 55.000 0.69 0.00 41.28 3.25
9618 16076 3.196901 ACCGTGCAACCAAGATCATACTA 59.803 43.478 0.00 0.00 0.00 1.82
9670 16128 0.035820 ATTGTTGGGACACGCGGTAT 60.036 50.000 12.47 0.00 39.29 2.73
9675 16133 1.338769 ACTCCTATTGTTGGGACACGC 60.339 52.381 0.00 0.00 39.29 5.34
9711 16169 0.404426 AGCCAACCCTAAACAGACCC 59.596 55.000 0.00 0.00 0.00 4.46
9713 16171 5.977489 ATTTTAGCCAACCCTAAACAGAC 57.023 39.130 0.00 0.00 37.11 3.51
9716 16174 7.070074 TGAGAAAATTTTAGCCAACCCTAAACA 59.930 33.333 2.75 0.00 37.11 2.83
9762 16220 4.896482 ACTCTACTAAGTCATCATCCCCAC 59.104 45.833 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.