AutoCloner

Multiple sequence alignment - TraesCS5B01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G281000	chr5B	100.000	2216	0	0	1	2216	466615311	466617526	0.000000e+00	4093.0
1	TraesCS5B01G281000	chr5B	80.102	196	29	7	1031	1218	466525621	466525814	1.070000e-28	137.0
2	TraesCS5B01G281000	chr5D	91.862	897	58	13	635	1525	387989080	387989967	0.000000e+00	1238.0
3	TraesCS5B01G281000	chr5D	88.246	553	63	2	1665	2216	526619060	526619611	0.000000e+00	660.0
4	TraesCS5B01G281000	chr5D	89.950	398	24	6	1	398	387984659	387985040	1.180000e-137	499.0
5	TraesCS5B01G281000	chr5D	92.636	258	10	1	384	632	387988686	387988943	1.620000e-96	363.0
6	TraesCS5B01G281000	chr5D	85.526	152	12	5	1514	1657	387990366	387990515	1.370000e-32	150.0
7	TraesCS5B01G281000	chr5D	77.949	195	35	5	1031	1218	387960856	387961049	5.000000e-22	115.0
8	TraesCS5B01G281000	chr7A	90.975	554	49	1	1664	2216	125770381	125770934	0.000000e+00	745.0
9	TraesCS5B01G281000	chr1B	90.553	561	51	2	1655	2214	478824753	478825312	0.000000e+00	741.0
10	TraesCS5B01G281000	chr1B	84.685	555	75	9	1662	2211	603384484	603385033	1.500000e-151	545.0
11	TraesCS5B01G281000	chr5A	90.827	556	46	4	799	1350	491162676	491163230	0.000000e+00	739.0
12	TraesCS5B01G281000	chr5A	88.352	455	22	15	334	758	491162220	491162673	3.260000e-143	518.0
13	TraesCS5B01G281000	chr5A	78.462	195	34	5	1031	1218	491093846	491094039	1.070000e-23	121.0
14	TraesCS5B01G281000	chr1A	90.761	552	50	1	1664	2214	14433979	14433428	0.000000e+00	736.0
15	TraesCS5B01G281000	chr3D	90.580	552	51	1	1664	2214	129467944	129467393	0.000000e+00	730.0
16	TraesCS5B01G281000	chr2D	89.038	520	54	3	1699	2216	52951914	52951396	1.860000e-180	641.0
17	TraesCS5B01G281000	chr2A	85.586	555	72	7	1661	2211	473383557	473384107	1.910000e-160	575.0
18	TraesCS5B01G281000	chr2A	85.225	555	74	7	1661	2211	473403082	473403632	4.130000e-157	564.0
19	TraesCS5B01G281000	chr1D	84.615	104	16	0	1034	1137	10955130	10955027	1.080000e-18	104.0
20	TraesCS5B01G281000	chr6D	96.875	32	0	1	1032	1063	37449700	37449730	4.000000e-03	52.8
21	TraesCS5B01G281000	chr6B	96.875	32	0	1	1032	1063	87560144	87560174	4.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G281000	chr5B	466615311	466617526	2215	False	4093.0	4093	100.0000	1	2216	1	chr5B.!!$F2	2215
1	TraesCS5B01G281000	chr5D	526619060	526619611	551	False	660.0	660	88.2460	1665	2216	1	chr5D.!!$F2	551
2	TraesCS5B01G281000	chr5D	387984659	387990515	5856	False	562.5	1238	89.9935	1	1657	4	chr5D.!!$F3	1656
3	TraesCS5B01G281000	chr7A	125770381	125770934	553	False	745.0	745	90.9750	1664	2216	1	chr7A.!!$F1	552
4	TraesCS5B01G281000	chr1B	478824753	478825312	559	False	741.0	741	90.5530	1655	2214	1	chr1B.!!$F1	559
5	TraesCS5B01G281000	chr1B	603384484	603385033	549	False	545.0	545	84.6850	1662	2211	1	chr1B.!!$F2	549
6	TraesCS5B01G281000	chr5A	491162220	491163230	1010	False	628.5	739	89.5895	334	1350	2	chr5A.!!$F2	1016
7	TraesCS5B01G281000	chr1A	14433428	14433979	551	True	736.0	736	90.7610	1664	2214	1	chr1A.!!$R1	550
8	TraesCS5B01G281000	chr3D	129467393	129467944	551	True	730.0	730	90.5800	1664	2214	1	chr3D.!!$R1	550
9	TraesCS5B01G281000	chr2D	52951396	52951914	518	True	641.0	641	89.0380	1699	2216	1	chr2D.!!$R1	517
10	TraesCS5B01G281000	chr2A	473383557	473384107	550	False	575.0	575	85.5860	1661	2211	1	chr2A.!!$F1	550
11	TraesCS5B01G281000	chr2A	473403082	473403632	550	False	564.0	564	85.2250	1661	2211	1	chr2A.!!$F2	550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
77	78	0.321122	GCGACTCCCATGGATCATCC	60.321	60.0	15.22	0.0	36.96	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2035	6277	0.247736	GCACCATCGACTTCCTGAGT	59.752	55.0	0.0	0.0	42.7	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	3.896133	CCGCATCCTGGCATGTGC	61.896	66.667	11.70	8.34	41.14	4.57
69	70	1.004560	ATATGCCGCGACTCCCATG	60.005	57.895	8.23	0.00	0.00	3.66
70	71	2.454832	ATATGCCGCGACTCCCATGG	62.455	60.000	8.23	4.14	0.00	3.66
72	73	4.241555	GCCGCGACTCCCATGGAT	62.242	66.667	15.22	0.00	0.00	3.41
73	74	2.029666	CCGCGACTCCCATGGATC	59.970	66.667	15.22	6.94	0.00	3.36
74	75	2.796193	CCGCGACTCCCATGGATCA	61.796	63.158	15.22	0.00	0.00	2.92
75	76	1.368950	CGCGACTCCCATGGATCAT	59.631	57.895	15.22	0.00	0.00	2.45
76	77	0.668706	CGCGACTCCCATGGATCATC	60.669	60.000	15.22	4.25	0.00	2.92
77	78	0.321122	GCGACTCCCATGGATCATCC	60.321	60.000	15.22	0.00	36.96	3.51
78	79	1.346062	CGACTCCCATGGATCATCCT	58.654	55.000	15.22	0.00	37.46	3.24
79	80	2.529632	CGACTCCCATGGATCATCCTA	58.470	52.381	15.22	0.00	37.46	2.94
81	82	3.515562	GACTCCCATGGATCATCCTAGT	58.484	50.000	15.22	3.20	37.46	2.57
82	83	3.246301	ACTCCCATGGATCATCCTAGTG	58.754	50.000	15.22	1.45	37.46	2.74
83	84	1.980765	TCCCATGGATCATCCTAGTGC	59.019	52.381	15.22	0.00	37.46	4.40
84	85	1.004044	CCCATGGATCATCCTAGTGCC	59.996	57.143	15.22	0.00	37.46	5.01
85	86	1.338484	CCATGGATCATCCTAGTGCCG	60.338	57.143	5.56	0.00	37.46	5.69
86	87	0.979665	ATGGATCATCCTAGTGCCGG	59.020	55.000	4.96	0.00	37.46	6.13
87	88	1.121407	TGGATCATCCTAGTGCCGGG	61.121	60.000	4.96	0.00	37.46	5.73
88	89	1.674057	GATCATCCTAGTGCCGGGG	59.326	63.158	2.18	0.00	0.00	5.73
89	90	0.832135	GATCATCCTAGTGCCGGGGA	60.832	60.000	2.18	0.00	0.00	4.81
90	91	0.833834	ATCATCCTAGTGCCGGGGAG	60.834	60.000	2.18	0.00	32.28	4.30
91	92	2.122813	ATCCTAGTGCCGGGGAGG	60.123	66.667	2.18	0.00	44.97	4.30
112	113	1.748122	CGAGGCTGCCAGCAAGAAT	60.748	57.895	22.65	0.00	44.75	2.40
126	127	5.163884	CCAGCAAGAATCATCGTATATGCAG	60.164	44.000	0.00	0.00	35.11	4.41
185	186	1.638529	CCGGCTGATCCCTAGAAGAT	58.361	55.000	0.00	0.00	0.00	2.40
192	193	4.158394	GCTGATCCCTAGAAGATAGCTCAG	59.842	50.000	0.00	0.00	0.00	3.35
200	201	3.295973	AGAAGATAGCTCAGTGAGGACC	58.704	50.000	21.54	5.25	0.00	4.46
201	202	2.080654	AGATAGCTCAGTGAGGACCC	57.919	55.000	21.54	4.88	0.00	4.46
214	215	2.362120	GACCCCAAGCAGCAGCAT	60.362	61.111	3.17	0.00	45.49	3.79
254	255	1.070786	GGTGAGTGGCAGTTTCGGA	59.929	57.895	0.00	0.00	0.00	4.55
261	262	0.744414	TGGCAGTTTCGGAGCTATGC	60.744	55.000	0.00	0.00	0.00	3.14
282	283	1.343821	GCATAACGGACACGAAGCG	59.656	57.895	0.00	0.00	44.60	4.68
371	372	1.613836	ACCAGGAGAAAAGCTTGCAG	58.386	50.000	0.00	0.00	0.00	4.41
424	4085	2.126882	ACCGAATCTTGGATGGGATCA	58.873	47.619	0.00	0.00	0.00	2.92
524	4199	3.822735	TCAAGCCTCCAAAGTCAAATCTG	59.177	43.478	0.00	0.00	0.00	2.90
563	4238	1.927174	AGCTTAATAAGACAGCGCGTG	59.073	47.619	8.43	7.60	38.66	5.34
578	4253	1.593551	CGCGTGCCGTGGTTAATTATG	60.594	52.381	0.00	0.00	33.47	1.90
633	4317	2.046892	AGCTGTGTCATCGCCACC	60.047	61.111	0.00	0.00	31.71	4.61
635	4319	2.393768	GCTGTGTCATCGCCACCAG	61.394	63.158	0.00	0.00	31.71	4.00
642	4461	4.526650	TGTGTCATCGCCACCAGTATATAT	59.473	41.667	0.00	0.00	31.71	0.86
679	4498	1.699656	GGTGATGCGTGCACTAGCTG	61.700	60.000	16.19	0.00	42.74	4.24
760	4580	9.232082	TGACTGAAAATTATTTTGACTTTCACG	57.768	29.630	7.72	0.00	33.62	4.35
765	4585	8.623310	AAAATTATTTTGACTTTCACGTCGTT	57.377	26.923	1.76	0.00	36.71	3.85
787	4607	2.918712	ATCATCGGTTGATCCACCTC	57.081	50.000	13.72	0.00	41.36	3.85
789	4609	1.482182	TCATCGGTTGATCCACCTCAG	59.518	52.381	13.72	3.75	34.22	3.35
790	4610	1.208052	CATCGGTTGATCCACCTCAGT	59.792	52.381	13.72	0.00	34.22	3.41
791	4611	2.225382	TCGGTTGATCCACCTCAGTA	57.775	50.000	13.72	0.00	34.22	2.74
792	4612	2.100197	TCGGTTGATCCACCTCAGTAG	58.900	52.381	13.72	0.00	34.22	2.57
794	4614	3.021695	CGGTTGATCCACCTCAGTAGTA	58.978	50.000	13.72	0.00	34.22	1.82
795	4615	3.181489	CGGTTGATCCACCTCAGTAGTAC	60.181	52.174	13.72	0.00	34.22	2.73
796	4616	3.132467	GGTTGATCCACCTCAGTAGTACC	59.868	52.174	8.73	0.00	33.50	3.34
918	4742	3.983344	GGCATCACATCACACAAGAAAAC	59.017	43.478	0.00	0.00	0.00	2.43
1011	4835	4.212913	GCGGCGATGAGCTCCTCA	62.213	66.667	12.98	0.00	44.99	3.86
1107	4931	1.125093	TCCTCAAGGACAAGCCCGAA	61.125	55.000	0.00	0.00	39.78	4.30
1128	4952	3.921521	GACATCGTCGTCCTCCCT	58.078	61.111	0.00	0.00	0.00	4.20
1130	4954	1.304217	ACATCGTCGTCCTCCCTGT	60.304	57.895	0.00	0.00	0.00	4.00
1135	4959	4.671590	TCGTCCTCCCTGTCGGCA	62.672	66.667	0.00	0.00	0.00	5.69
1137	4961	4.083862	GTCCTCCCTGTCGGCACC	62.084	72.222	0.00	0.00	0.00	5.01
1209	5033	2.439883	GACGAGACCCCCTACGCT	60.440	66.667	0.00	0.00	0.00	5.07
1233	5057	4.142425	GGCTAGCTAGGCTAAATACCTACG	60.142	50.000	33.64	0.84	40.82	3.51
1240	5064	2.094338	GGCTAAATACCTACGCGGCTAT	60.094	50.000	12.47	0.00	35.61	2.97
1272	5096	8.593679	AGTGATTATTAATATCACGGGTCATGA	58.406	33.333	20.35	0.00	46.61	3.07
1326	5150	0.111061	TGGATGTCATGGCCCTATGC	59.889	55.000	0.00	0.00	40.16	3.14
1353	5177	6.376864	TGCTAGCTCCTTAATTTGCATTTACA	59.623	34.615	17.23	0.00	0.00	2.41
1354	5178	6.914757	GCTAGCTCCTTAATTTGCATTTACAG	59.085	38.462	7.70	0.00	0.00	2.74
1358	5182	6.524101	TCCTTAATTTGCATTTACAGTCCC	57.476	37.500	0.00	0.00	0.00	4.46
1363	5187	5.760484	ATTTGCATTTACAGTCCCCAAAT	57.240	34.783	0.00	0.00	0.00	2.32
1365	5189	4.799564	TGCATTTACAGTCCCCAAATTC	57.200	40.909	0.00	0.00	0.00	2.17
1411	5235	7.577303	TCTGCTCCATACAAGGATTTCTTATT	58.423	34.615	0.00	0.00	36.99	1.40
1536	5770	6.033341	TCATTTCCTTTTTAATTCGGATGCG	58.967	36.000	0.00	0.00	0.00	4.73
1541	5775	4.202010	CCTTTTTAATTCGGATGCGGATGT	60.202	41.667	6.82	0.00	0.00	3.06
1596	5830	7.598278	ACGAGTATCTGATATTCTGGATTGTC	58.402	38.462	15.42	0.00	0.00	3.18
1616	5858	5.432645	TGTCCATGTCACTTTTCACACTTA	58.567	37.500	0.00	0.00	0.00	2.24
1627	5869	4.816786	TTTCACACTTAAGGTTTACCGC	57.183	40.909	7.53	0.00	42.08	5.68
1628	5870	2.769893	TCACACTTAAGGTTTACCGCC	58.230	47.619	7.53	0.00	42.08	6.13
1634	5876	3.840078	ACTTAAGGTTTACCGCCCTTCTA	59.160	43.478	7.53	0.00	41.30	2.10
1641	5883	4.081476	GGTTTACCGCCCTTCTAACTAAGA	60.081	45.833	0.00	0.00	0.00	2.10
1643	5885	5.945144	TTACCGCCCTTCTAACTAAGATT	57.055	39.130	0.00	0.00	33.05	2.40
1732	5974	3.518303	GGGGTTAGAACATACAGAGTGGT	59.482	47.826	0.00	0.00	0.00	4.16
1756	5998	3.631145	GTGGTCACGTACACTACAAGA	57.369	47.619	8.05	0.00	34.84	3.02
1823	6065	5.163301	CCAGACAACCTAGGCTACATTACAT	60.163	44.000	9.30	0.00	0.00	2.29
2014	6256	2.086869	CGTTTCTCCATGGCAACTGAT	58.913	47.619	6.96	0.00	37.61	2.90
2016	6258	3.689161	CGTTTCTCCATGGCAACTGATTA	59.311	43.478	6.96	0.00	37.61	1.75
2035	6277	1.195115	AGATAGCGGTTCTGAGCCAA	58.805	50.000	11.24	0.00	0.00	4.52
2093	6336	1.973812	GGCAGCACCAGGAAAGGAC	60.974	63.158	0.00	0.00	38.86	3.85
2120	6363	1.347050	CCAGATGATGCGGGAGAAGAT	59.653	52.381	0.00	0.00	0.00	2.40
2177	6420	0.901827	TGGGAGCATAGAACGCAAGA	59.098	50.000	0.00	0.00	43.62	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	1.577922	CATATGAGCCGGCACATGC	59.422	57.895	39.09	19.87	41.14	4.06
47	48	2.024319	GGAGTCGCGGCATATGAGC	61.024	63.158	15.58	10.07	0.00	4.26
59	60	1.346062	AGGATGATCCATGGGAGTCG	58.654	55.000	14.90	0.00	39.61	4.18
69	70	1.674057	CCCGGCACTAGGATGATCC	59.326	63.158	2.46	2.46	36.58	3.36
70	71	0.832135	TCCCCGGCACTAGGATGATC	60.832	60.000	0.00	0.00	0.00	2.92
71	72	0.833834	CTCCCCGGCACTAGGATGAT	60.834	60.000	0.00	0.00	0.00	2.45
72	73	1.457643	CTCCCCGGCACTAGGATGA	60.458	63.158	0.00	0.00	0.00	2.92
73	74	2.511452	CCTCCCCGGCACTAGGATG	61.511	68.421	0.00	0.00	0.00	3.51
74	75	2.122813	CCTCCCCGGCACTAGGAT	60.123	66.667	0.00	0.00	0.00	3.24
92	93	2.793160	TTCTTGCTGGCAGCCTCGAG	62.793	60.000	34.58	24.85	41.51	4.04
93	94	2.189191	ATTCTTGCTGGCAGCCTCGA	62.189	55.000	34.58	24.10	41.51	4.04
94	95	1.712977	GATTCTTGCTGGCAGCCTCG	61.713	60.000	34.58	22.33	41.51	4.63
112	113	4.021981	CCAACTCCTCTGCATATACGATGA	60.022	45.833	0.00	0.00	0.00	2.92
126	127	3.414700	CACGCGTGCCAACTCCTC	61.415	66.667	28.16	0.00	0.00	3.71
165	166	1.115930	TCTTCTAGGGATCAGCCGGC	61.116	60.000	21.89	21.89	37.63	6.13
185	186	0.116342	TTGGGGTCCTCACTGAGCTA	59.884	55.000	0.00	0.00	33.34	3.32
192	193	2.360475	GCTGCTTGGGGTCCTCAC	60.360	66.667	0.00	0.00	0.00	3.51
200	201	0.108804	CTTCAATGCTGCTGCTTGGG	60.109	55.000	17.00	7.02	40.48	4.12
201	202	0.108804	CCTTCAATGCTGCTGCTTGG	60.109	55.000	17.00	8.27	40.48	3.61
214	215	0.783206	TTCAAGGATGCCCCCTTCAA	59.217	50.000	3.96	0.00	44.30	2.69
254	255	0.758734	TCCGTTATGCCAGCATAGCT	59.241	50.000	19.83	0.00	39.68	3.32
261	262	0.999406	CTTCGTGTCCGTTATGCCAG	59.001	55.000	0.00	0.00	35.01	4.85
326	327	1.800586	CTCCACAACCACATTCTCACG	59.199	52.381	0.00	0.00	0.00	4.35
371	372	1.140816	GACGTCAAGCTGAACCAGAC	58.859	55.000	11.55	0.00	32.44	3.51
408	4069	4.868172	TCAACTGATCCCATCCAAGATT	57.132	40.909	0.00	0.00	0.00	2.40
424	4085	4.333690	AGCTCAGCTCATTCAATTCAACT	58.666	39.130	0.00	0.00	30.62	3.16
563	4238	2.680841	TCAGTGCATAATTAACCACGGC	59.319	45.455	11.46	0.00	33.62	5.68
568	4243	5.708948	TGCTTTGTCAGTGCATAATTAACC	58.291	37.500	0.00	0.00	0.00	2.85
578	4253	5.798934	CAGATTCTTATTGCTTTGTCAGTGC	59.201	40.000	0.00	0.00	0.00	4.40
633	4317	7.277174	TGACCAGATCGCCATATATATACTG	57.723	40.000	0.00	0.00	0.00	2.74
635	4319	7.600375	CCATTGACCAGATCGCCATATATATAC	59.400	40.741	0.00	0.00	0.00	1.47
642	4461	1.768275	ACCATTGACCAGATCGCCATA	59.232	47.619	0.00	0.00	0.00	2.74
679	4498	4.010349	ACTAGCTGACCAAAGTTAATGGC	58.990	43.478	0.00	0.00	41.89	4.40
787	4607	3.315470	TGCGAATGCTAGAGGTACTACTG	59.685	47.826	0.00	0.00	40.46	2.74
789	4609	3.984508	TGCGAATGCTAGAGGTACTAC	57.015	47.619	0.00	0.00	40.46	2.73
790	4610	4.156190	GCTATGCGAATGCTAGAGGTACTA	59.844	45.833	0.00	0.00	40.46	1.82
791	4611	3.057174	GCTATGCGAATGCTAGAGGTACT	60.057	47.826	0.00	0.00	42.79	2.73
792	4612	3.246619	GCTATGCGAATGCTAGAGGTAC	58.753	50.000	0.00	0.00	43.34	3.34
794	4614	2.447244	GCTATGCGAATGCTAGAGGT	57.553	50.000	0.00	0.00	43.34	3.85
888	4712	2.291735	TGTGATGTGATGCCCAAATCCT	60.292	45.455	4.50	0.00	38.49	3.24
1067	4891	1.207791	GATCTTCTTGGCCTCCTCCA	58.792	55.000	3.32	0.00	0.00	3.86
1128	4952	2.031919	GTGACCATGGTGCCGACA	59.968	61.111	25.52	10.99	0.00	4.35
1130	4954	2.601702	ATGGTGACCATGGTGCCGA	61.602	57.895	25.52	14.34	43.39	5.54
1152	4976	4.329545	ACGCGCTGGGGATTGTGT	62.330	61.111	5.73	0.00	0.00	3.72
1153	4977	3.499737	GACGCGCTGGGGATTGTG	61.500	66.667	5.73	0.00	0.00	3.33
1209	5033	3.858135	AGGTATTTAGCCTAGCTAGCCA	58.142	45.455	15.74	0.00	42.34	4.75
1259	5083	2.691409	ATTCGTTCATGACCCGTGAT	57.309	45.000	12.27	6.75	0.00	3.06
1319	5143	1.005630	GGAGCTAGCACGCATAGGG	60.006	63.158	18.83	0.00	0.00	3.53
1321	5145	3.371102	TTAAGGAGCTAGCACGCATAG	57.629	47.619	18.83	0.00	0.00	2.23
1326	5150	2.677836	TGCAAATTAAGGAGCTAGCACG	59.322	45.455	18.83	0.00	0.00	5.34
1353	5177	1.217942	GGGGCATAGAATTTGGGGACT	59.782	52.381	0.00	0.00	0.00	3.85
1354	5178	1.217942	AGGGGCATAGAATTTGGGGAC	59.782	52.381	0.00	0.00	0.00	4.46
1358	5182	2.459555	ACCAGGGGCATAGAATTTGG	57.540	50.000	0.00	0.00	0.00	3.28
1363	5187	2.487775	ACACATACCAGGGGCATAGAA	58.512	47.619	0.00	0.00	0.00	2.10
1365	5189	4.287067	AGATAACACATACCAGGGGCATAG	59.713	45.833	0.00	0.00	0.00	2.23
1448	5272	7.029563	ACTAATGTGGATTTCGAAGCAAATTC	58.970	34.615	0.00	0.00	34.31	2.17
1449	5273	6.924111	ACTAATGTGGATTTCGAAGCAAATT	58.076	32.000	0.00	0.00	0.00	1.82
1450	5274	6.515272	ACTAATGTGGATTTCGAAGCAAAT	57.485	33.333	0.00	0.00	0.00	2.32
1451	5275	5.957842	ACTAATGTGGATTTCGAAGCAAA	57.042	34.783	0.00	0.00	0.00	3.68
1460	5284	8.952278	TGCGAGTTTAAATACTAATGTGGATTT	58.048	29.630	0.00	0.00	0.00	2.17
1483	5307	9.979270	GTGAAAGATATCCAGATATATTTTGCG	57.021	33.333	17.04	0.00	42.11	4.85
1512	5336	6.033341	CGCATCCGAATTAAAAAGGAAATGA	58.967	36.000	1.18	0.00	36.25	2.57
1526	5760	1.134401	AGTTGACATCCGCATCCGAAT	60.134	47.619	0.00	0.00	36.29	3.34
1596	5830	5.299279	ACCTTAAGTGTGAAAAGTGACATGG	59.701	40.000	0.97	0.00	0.00	3.66
1601	5843	6.037391	CGGTAAACCTTAAGTGTGAAAAGTGA	59.963	38.462	0.97	0.00	0.00	3.41
1602	5844	6.196571	CGGTAAACCTTAAGTGTGAAAAGTG	58.803	40.000	0.97	0.00	0.00	3.16
1684	5926	4.744136	ATCAATGCAATGATACGCTCAG	57.256	40.909	15.68	0.00	38.25	3.35
1756	5998	3.925379	TCTCTTTGTATCGTGTGCACAT	58.075	40.909	24.69	9.98	0.00	3.21
1823	6065	8.506168	GTCAAAGGACTCAACAATATTATCCA	57.494	34.615	0.00	0.00	40.99	3.41
1851	6093	2.597340	GCTCCTGGGCCTATGCAA	59.403	61.111	4.53	0.00	40.13	4.08
2014	6256	2.384828	TGGCTCAGAACCGCTATCTAA	58.615	47.619	0.00	0.00	0.00	2.10
2016	6258	1.134670	GTTGGCTCAGAACCGCTATCT	60.135	52.381	0.00	0.00	0.00	1.98
2035	6277	0.247736	GCACCATCGACTTCCTGAGT	59.752	55.000	0.00	0.00	42.70	3.41
2062	6304	2.731571	GCTGCCTGTGATCCCCGTA	61.732	63.158	0.00	0.00	0.00	4.02
2093	6336	3.945434	GCATCATCTGGCACGGCG	61.945	66.667	4.80	4.80	32.53	6.46
2120	6363	0.768622	CCACCTCTTGGTTGGGTGTA	59.231	55.000	9.93	0.00	46.05	2.90
2145	6388	1.893062	CTCCCAGCATGACGAGACA	59.107	57.895	0.00	0.00	39.69	3.41
2177	6420	2.003548	GGTCTCCCCCATGAGCCTT	61.004	63.158	0.00	0.00	32.22	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.