Multiple sequence alignment - TraesCS5B01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G280500 chr5B 100.000 4825 0 0 1 4825 466175493 466170669 0.000000e+00 8911.0
1 TraesCS5B01G280500 chr5B 86.282 1735 186 30 1853 3570 466222527 466220828 0.000000e+00 1838.0
2 TraesCS5B01G280500 chr5B 81.849 1190 186 21 2140 3319 466027478 466026309 0.000000e+00 974.0
3 TraesCS5B01G280500 chr5B 81.650 1188 189 20 2653 3823 466004346 466003171 0.000000e+00 959.0
4 TraesCS5B01G280500 chr5B 75.649 1232 260 30 2359 3576 466006667 466005462 1.160000e-160 577.0
5 TraesCS5B01G280500 chr5B 79.887 532 76 19 1318 1834 466223100 466222585 1.280000e-95 361.0
6 TraesCS5B01G280500 chr5B 82.768 354 51 9 10 359 535398546 535398199 1.690000e-79 307.0
7 TraesCS5B01G280500 chr5D 93.955 3573 164 26 1269 4825 387707599 387704063 0.000000e+00 5354.0
8 TraesCS5B01G280500 chr5D 86.578 1274 141 15 1853 3121 387713631 387712383 0.000000e+00 1378.0
9 TraesCS5B01G280500 chr5D 82.056 1187 186 19 2140 3319 387693738 387692572 0.000000e+00 987.0
10 TraesCS5B01G280500 chr5D 93.631 628 30 8 648 1271 387708255 387707634 0.000000e+00 929.0
11 TraesCS5B01G280500 chr5D 84.138 725 94 16 3120 3832 387712301 387711586 0.000000e+00 682.0
12 TraesCS5B01G280500 chr5D 81.936 692 110 13 3143 3823 387630832 387630145 5.420000e-159 571.0
13 TraesCS5B01G280500 chr5D 85.633 529 69 6 2359 2886 387661696 387661174 2.540000e-152 549.0
14 TraesCS5B01G280500 chr5D 85.231 325 34 9 1320 1632 387714268 387713946 6.020000e-84 322.0
15 TraesCS5B01G280500 chr5D 85.238 210 25 4 2947 3150 387661166 387660957 1.360000e-50 211.0
16 TraesCS5B01G280500 chr5D 77.833 203 29 9 1636 1834 387713878 387713688 1.420000e-20 111.0
17 TraesCS5B01G280500 chr5D 91.892 74 5 1 382 455 387708312 387708240 8.540000e-18 102.0
18 TraesCS5B01G280500 chr5A 94.943 3223 147 13 1269 4476 490595706 490592485 0.000000e+00 5035.0
19 TraesCS5B01G280500 chr5A 86.488 1717 212 16 2124 3832 490652573 490650869 0.000000e+00 1868.0
20 TraesCS5B01G280500 chr5A 82.008 1484 222 30 2359 3823 490321264 490319807 0.000000e+00 1219.0
21 TraesCS5B01G280500 chr5A 82.025 1185 184 21 2140 3316 490419808 490418645 0.000000e+00 981.0
22 TraesCS5B01G280500 chr5A 93.600 625 23 8 654 1271 490596355 490595741 0.000000e+00 917.0
23 TraesCS5B01G280500 chr5A 84.062 389 56 5 1 384 69105539 69105152 2.120000e-98 370.0
24 TraesCS5B01G280500 chr5A 89.474 228 20 4 4468 4692 490592013 490591787 7.900000e-73 285.0
25 TraesCS5B01G280500 chr5A 91.346 208 14 4 4468 4672 490592339 490592133 1.020000e-71 281.0
26 TraesCS5B01G280500 chr5A 92.754 138 9 1 511 647 524008545 524008682 1.060000e-46 198.0
27 TraesCS5B01G280500 chr5A 89.583 144 14 1 4682 4825 490590489 490590347 1.070000e-41 182.0
28 TraesCS5B01G280500 chr5A 80.645 186 29 5 1653 1834 490653045 490652863 2.340000e-28 137.0
29 TraesCS5B01G280500 chr5A 90.909 44 3 1 4129 4171 74595940 74595897 1.880000e-04 58.4
30 TraesCS5B01G280500 chr2B 86.269 386 47 4 2 382 76027045 76027429 9.660000e-112 414.0
31 TraesCS5B01G280500 chr2B 86.010 386 48 4 2 382 76071340 76071724 4.500000e-110 409.0
32 TraesCS5B01G280500 chr2B 79.580 333 55 11 16 341 119802860 119803186 4.860000e-55 226.0
33 TraesCS5B01G280500 chr1B 85.347 389 45 7 1 380 644606177 644605792 4.530000e-105 392.0
34 TraesCS5B01G280500 chr4D 86.455 347 44 3 16 360 419336780 419336435 1.270000e-100 377.0
35 TraesCS5B01G280500 chr4A 86.875 320 41 1 1 319 169690345 169690026 1.650000e-94 357.0
36 TraesCS5B01G280500 chr6B 86.280 328 32 6 59 378 668893610 668893932 1.290000e-90 344.0
37 TraesCS5B01G280500 chr6B 92.754 138 9 1 511 647 675396069 675395932 1.060000e-46 198.0
38 TraesCS5B01G280500 chr3A 86.058 208 19 6 451 649 703087013 703086807 1.050000e-51 215.0
39 TraesCS5B01G280500 chr3A 85.714 196 23 4 453 645 12338383 12338190 8.190000e-48 202.0
40 TraesCS5B01G280500 chr3A 100.000 31 0 0 4127 4157 709404469 709404439 1.880000e-04 58.4
41 TraesCS5B01G280500 chr6D 86.000 200 21 7 449 647 108768814 108769007 1.760000e-49 207.0
42 TraesCS5B01G280500 chr3D 92.806 139 9 1 511 648 9253535 9253673 2.950000e-47 200.0
43 TraesCS5B01G280500 chr7D 92.754 138 9 1 511 647 82851299 82851436 1.060000e-46 198.0
44 TraesCS5B01G280500 chr7D 84.422 199 25 5 453 648 21581888 21582083 1.770000e-44 191.0
45 TraesCS5B01G280500 chr7B 92.754 138 9 1 511 647 658119299 658119162 1.060000e-46 198.0
46 TraesCS5B01G280500 chr7B 98.361 61 1 0 450 510 614906647 614906707 1.840000e-19 108.0
47 TraesCS5B01G280500 chr4B 96.875 64 1 1 448 510 145793900 145793963 6.600000e-19 106.0
48 TraesCS5B01G280500 chr2A 94.366 71 1 2 447 515 774591906 774591837 6.600000e-19 106.0
49 TraesCS5B01G280500 chr7A 86.813 91 5 5 427 515 93251314 93251229 1.430000e-15 95.3
50 TraesCS5B01G280500 chr7A 86.517 89 8 3 430 515 641055716 641055629 1.430000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G280500 chr5B 466170669 466175493 4824 True 8911.000000 8911 100.000000 1 4825 1 chr5B.!!$R2 4824
1 TraesCS5B01G280500 chr5B 466220828 466223100 2272 True 1099.500000 1838 83.084500 1318 3570 2 chr5B.!!$R5 2252
2 TraesCS5B01G280500 chr5B 466026309 466027478 1169 True 974.000000 974 81.849000 2140 3319 1 chr5B.!!$R1 1179
3 TraesCS5B01G280500 chr5B 466003171 466006667 3496 True 768.000000 959 78.649500 2359 3823 2 chr5B.!!$R4 1464
4 TraesCS5B01G280500 chr5D 387704063 387714268 10205 True 1268.285714 5354 87.608286 382 4825 7 chr5D.!!$R4 4443
5 TraesCS5B01G280500 chr5D 387692572 387693738 1166 True 987.000000 987 82.056000 2140 3319 1 chr5D.!!$R2 1179
6 TraesCS5B01G280500 chr5D 387630145 387630832 687 True 571.000000 571 81.936000 3143 3823 1 chr5D.!!$R1 680
7 TraesCS5B01G280500 chr5D 387660957 387661696 739 True 380.000000 549 85.435500 2359 3150 2 chr5D.!!$R3 791
8 TraesCS5B01G280500 chr5A 490590347 490596355 6008 True 1340.000000 5035 91.789200 654 4825 5 chr5A.!!$R5 4171
9 TraesCS5B01G280500 chr5A 490319807 490321264 1457 True 1219.000000 1219 82.008000 2359 3823 1 chr5A.!!$R3 1464
10 TraesCS5B01G280500 chr5A 490650869 490653045 2176 True 1002.500000 1868 83.566500 1653 3832 2 chr5A.!!$R6 2179
11 TraesCS5B01G280500 chr5A 490418645 490419808 1163 True 981.000000 981 82.025000 2140 3316 1 chr5A.!!$R4 1176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 6087 0.104855 GCGCATACACTCATCCCTGA 59.895 55.0 0.3 0.0 0.00 3.86 F
1099 6686 0.033011 AGATCTGTCCCAGCCTACGT 60.033 55.0 0.0 0.0 0.00 3.57 F
1103 6690 0.320374 CTGTCCCAGCCTACGTTCAA 59.680 55.0 0.0 0.0 0.00 2.69 F
2099 7783 0.819259 ATGGTCCCAATCCATTCGCG 60.819 55.0 0.0 0.0 42.24 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 6977 0.322648 TGGTGACTGATGAGTGCAGG 59.677 55.0 0.00 0.0 37.69 4.85 R
2513 8207 0.387929 CGGTAGCGGGCAGATAAAGA 59.612 55.0 6.39 0.0 0.00 2.52 R
2532 8226 2.099263 TGTAGTATGCTTCGTCCTCAGC 59.901 50.0 0.00 0.0 36.49 4.26 R
4009 9754 0.837272 TCATTTCCCCGACCTCATCC 59.163 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.180406 ATCGGTGAATGTACCTGGGC 59.820 55.000 0.00 0.00 38.62 5.36
24 25 0.907704 TCGGTGAATGTACCTGGGCT 60.908 55.000 0.00 0.00 38.62 5.19
25 26 0.828022 CGGTGAATGTACCTGGGCTA 59.172 55.000 0.00 0.00 38.62 3.93
26 27 1.202533 CGGTGAATGTACCTGGGCTAG 60.203 57.143 0.00 0.00 38.62 3.42
47 48 3.795688 GGATGATCCCCTAGAATTGCA 57.204 47.619 0.00 0.00 0.00 4.08
50 51 2.775418 TGATCCCCTAGAATTGCAGGA 58.225 47.619 3.87 0.00 33.42 3.86
51 52 2.439507 TGATCCCCTAGAATTGCAGGAC 59.560 50.000 3.87 0.00 33.42 3.85
54 55 2.439507 TCCCCTAGAATTGCAGGACATC 59.560 50.000 3.87 0.00 33.42 3.06
58 59 3.244353 CCTAGAATTGCAGGACATCGGAT 60.244 47.826 0.00 0.00 33.42 4.18
60 61 2.171237 AGAATTGCAGGACATCGGATCA 59.829 45.455 0.00 0.00 0.00 2.92
61 62 1.959042 ATTGCAGGACATCGGATCAC 58.041 50.000 0.00 0.00 0.00 3.06
63 64 0.612744 TGCAGGACATCGGATCACAA 59.387 50.000 0.00 0.00 0.00 3.33
65 66 2.083774 GCAGGACATCGGATCACAAAA 58.916 47.619 0.00 0.00 0.00 2.44
66 67 2.684881 GCAGGACATCGGATCACAAAAT 59.315 45.455 0.00 0.00 0.00 1.82
67 68 3.242870 GCAGGACATCGGATCACAAAATC 60.243 47.826 0.00 0.00 0.00 2.17
73 74 2.985896 TCGGATCACAAAATCTCCACC 58.014 47.619 0.00 0.00 0.00 4.61
74 75 2.304470 TCGGATCACAAAATCTCCACCA 59.696 45.455 0.00 0.00 0.00 4.17
81 82 4.701651 TCACAAAATCTCCACCATGATGTC 59.298 41.667 0.00 0.00 0.00 3.06
83 84 3.912496 AAATCTCCACCATGATGTCGA 57.088 42.857 0.00 0.00 0.00 4.20
84 85 4.428294 AAATCTCCACCATGATGTCGAT 57.572 40.909 0.00 0.00 0.00 3.59
86 87 2.387757 TCTCCACCATGATGTCGATGA 58.612 47.619 0.00 0.00 0.00 2.92
89 90 3.270027 TCCACCATGATGTCGATGAAAC 58.730 45.455 0.00 0.00 0.00 2.78
91 92 3.181507 CCACCATGATGTCGATGAAACAC 60.182 47.826 0.00 0.00 0.00 3.32
94 95 4.393062 ACCATGATGTCGATGAAACACTTC 59.607 41.667 0.00 0.00 0.00 3.01
95 96 4.392754 CCATGATGTCGATGAAACACTTCA 59.607 41.667 0.00 0.00 45.53 3.02
97 98 5.342806 TGATGTCGATGAAACACTTCAAC 57.657 39.130 0.00 0.00 44.64 3.18
102 103 5.198274 GTCGATGAAACACTTCAACTTCAC 58.802 41.667 0.00 0.00 44.64 3.18
104 105 5.352846 TCGATGAAACACTTCAACTTCACAA 59.647 36.000 0.00 0.00 44.64 3.33
105 106 6.027131 CGATGAAACACTTCAACTTCACAAA 58.973 36.000 0.00 0.00 44.64 2.83
107 108 6.567687 TGAAACACTTCAACTTCACAAAGA 57.432 33.333 0.00 0.00 38.65 2.52
110 111 7.381139 TGAAACACTTCAACTTCACAAAGAAAC 59.619 33.333 0.00 0.00 38.65 2.78
112 113 6.744112 ACACTTCAACTTCACAAAGAAACAA 58.256 32.000 0.00 0.00 35.40 2.83
114 115 7.542130 ACACTTCAACTTCACAAAGAAACAATC 59.458 33.333 0.00 0.00 35.40 2.67
115 116 7.009540 CACTTCAACTTCACAAAGAAACAATCC 59.990 37.037 0.00 0.00 35.40 3.01
116 117 6.522625 TCAACTTCACAAAGAAACAATCCA 57.477 33.333 0.00 0.00 35.40 3.41
117 118 6.929625 TCAACTTCACAAAGAAACAATCCAA 58.070 32.000 0.00 0.00 35.40 3.53
118 119 6.811170 TCAACTTCACAAAGAAACAATCCAAC 59.189 34.615 0.00 0.00 35.40 3.77
119 120 6.279513 ACTTCACAAAGAAACAATCCAACA 57.720 33.333 0.00 0.00 35.40 3.33
120 121 6.332630 ACTTCACAAAGAAACAATCCAACAG 58.667 36.000 0.00 0.00 35.40 3.16
125 126 6.593382 CACAAAGAAACAATCCAACAGGAAAA 59.407 34.615 0.00 0.00 34.49 2.29
126 127 6.593770 ACAAAGAAACAATCCAACAGGAAAAC 59.406 34.615 0.00 0.00 34.49 2.43
127 128 6.544928 AAGAAACAATCCAACAGGAAAACT 57.455 33.333 0.00 0.00 34.49 2.66
130 131 6.818142 AGAAACAATCCAACAGGAAAACTTTG 59.182 34.615 0.00 0.00 34.49 2.77
131 132 5.930837 ACAATCCAACAGGAAAACTTTGA 57.069 34.783 0.00 0.00 34.49 2.69
132 133 5.660460 ACAATCCAACAGGAAAACTTTGAC 58.340 37.500 0.00 0.00 34.49 3.18
133 134 5.186797 ACAATCCAACAGGAAAACTTTGACA 59.813 36.000 0.00 0.00 34.49 3.58
134 135 4.712122 TCCAACAGGAAAACTTTGACAC 57.288 40.909 0.00 0.00 0.00 3.67
135 136 4.082845 TCCAACAGGAAAACTTTGACACA 58.917 39.130 0.00 0.00 0.00 3.72
137 138 4.173256 CAACAGGAAAACTTTGACACACC 58.827 43.478 0.00 0.00 0.00 4.16
139 140 3.829601 ACAGGAAAACTTTGACACACCAA 59.170 39.130 0.00 0.00 0.00 3.67
140 141 4.173256 CAGGAAAACTTTGACACACCAAC 58.827 43.478 0.00 0.00 0.00 3.77
141 142 3.194755 AGGAAAACTTTGACACACCAACC 59.805 43.478 0.00 0.00 0.00 3.77
143 144 4.399934 GGAAAACTTTGACACACCAACCTA 59.600 41.667 0.00 0.00 0.00 3.08
144 145 5.105675 GGAAAACTTTGACACACCAACCTAA 60.106 40.000 0.00 0.00 0.00 2.69
146 147 4.976224 ACTTTGACACACCAACCTAAAC 57.024 40.909 0.00 0.00 0.00 2.01
147 148 4.595986 ACTTTGACACACCAACCTAAACT 58.404 39.130 0.00 0.00 0.00 2.66
148 149 4.638865 ACTTTGACACACCAACCTAAACTC 59.361 41.667 0.00 0.00 0.00 3.01
149 150 3.916359 TGACACACCAACCTAAACTCA 57.084 42.857 0.00 0.00 0.00 3.41
150 151 4.431416 TGACACACCAACCTAAACTCAT 57.569 40.909 0.00 0.00 0.00 2.90
151 152 4.385825 TGACACACCAACCTAAACTCATC 58.614 43.478 0.00 0.00 0.00 2.92
154 155 4.102524 ACACACCAACCTAAACTCATCAGA 59.897 41.667 0.00 0.00 0.00 3.27
155 156 5.221925 ACACACCAACCTAAACTCATCAGAT 60.222 40.000 0.00 0.00 0.00 2.90
156 157 5.352569 CACACCAACCTAAACTCATCAGATC 59.647 44.000 0.00 0.00 0.00 2.75
157 158 4.568359 CACCAACCTAAACTCATCAGATCG 59.432 45.833 0.00 0.00 0.00 3.69
159 160 5.046591 ACCAACCTAAACTCATCAGATCGAA 60.047 40.000 0.00 0.00 0.00 3.71
160 161 5.874810 CCAACCTAAACTCATCAGATCGAAA 59.125 40.000 0.00 0.00 0.00 3.46
161 162 6.540189 CCAACCTAAACTCATCAGATCGAAAT 59.460 38.462 0.00 0.00 0.00 2.17
162 163 7.710907 CCAACCTAAACTCATCAGATCGAAATA 59.289 37.037 0.00 0.00 0.00 1.40
163 164 9.098355 CAACCTAAACTCATCAGATCGAAATAA 57.902 33.333 0.00 0.00 0.00 1.40
164 165 9.838339 AACCTAAACTCATCAGATCGAAATAAT 57.162 29.630 0.00 0.00 0.00 1.28
165 166 9.482627 ACCTAAACTCATCAGATCGAAATAATC 57.517 33.333 0.00 0.00 0.00 1.75
179 180 3.305398 AATAATCGGATCTGCGAGGAC 57.695 47.619 0.00 0.00 0.00 3.85
180 181 1.687563 TAATCGGATCTGCGAGGACA 58.312 50.000 0.00 0.00 0.00 4.02
181 182 0.387202 AATCGGATCTGCGAGGACAG 59.613 55.000 0.00 0.00 39.12 3.51
189 190 1.964223 TCTGCGAGGACAGAAAACTCT 59.036 47.619 0.00 0.00 43.59 3.24
193 194 3.572682 TGCGAGGACAGAAAACTCTCTAA 59.427 43.478 0.00 0.00 0.00 2.10
196 197 4.218852 CGAGGACAGAAAACTCTCTAACCT 59.781 45.833 0.00 0.00 34.76 3.50
198 199 5.148502 AGGACAGAAAACTCTCTAACCTCA 58.851 41.667 0.00 0.00 29.66 3.86
200 201 5.872070 GGACAGAAAACTCTCTAACCTCATG 59.128 44.000 0.00 0.00 0.00 3.07
203 204 6.042093 ACAGAAAACTCTCTAACCTCATGTCA 59.958 38.462 0.00 0.00 0.00 3.58
205 206 7.277539 CAGAAAACTCTCTAACCTCATGTCATC 59.722 40.741 0.00 0.00 0.00 2.92
206 207 4.909696 ACTCTCTAACCTCATGTCATCG 57.090 45.455 0.00 0.00 0.00 3.84
207 208 3.067461 ACTCTCTAACCTCATGTCATCGC 59.933 47.826 0.00 0.00 0.00 4.58
210 211 4.887655 TCTCTAACCTCATGTCATCGCTAA 59.112 41.667 0.00 0.00 0.00 3.09
213 214 6.042777 TCTAACCTCATGTCATCGCTAAAAG 58.957 40.000 0.00 0.00 0.00 2.27
214 215 4.471904 ACCTCATGTCATCGCTAAAAGA 57.528 40.909 0.00 0.00 0.00 2.52
215 216 4.832248 ACCTCATGTCATCGCTAAAAGAA 58.168 39.130 0.00 0.00 0.00 2.52
216 217 5.431765 ACCTCATGTCATCGCTAAAAGAAT 58.568 37.500 0.00 0.00 0.00 2.40
218 219 5.525012 CCTCATGTCATCGCTAAAAGAATGA 59.475 40.000 0.00 0.00 0.00 2.57
219 220 6.292757 CCTCATGTCATCGCTAAAAGAATGAG 60.293 42.308 0.00 0.00 38.67 2.90
220 221 6.340522 TCATGTCATCGCTAAAAGAATGAGA 58.659 36.000 0.00 0.00 0.00 3.27
221 222 6.478016 TCATGTCATCGCTAAAAGAATGAGAG 59.522 38.462 0.00 0.00 0.00 3.20
222 223 4.568359 TGTCATCGCTAAAAGAATGAGAGC 59.432 41.667 0.00 0.00 0.00 4.09
226 227 6.317140 TCATCGCTAAAAGAATGAGAGCAAAT 59.683 34.615 0.00 0.00 32.55 2.32
229 230 8.039603 TCGCTAAAAGAATGAGAGCAAATTTA 57.960 30.769 0.00 0.00 32.55 1.40
230 231 8.677300 TCGCTAAAAGAATGAGAGCAAATTTAT 58.323 29.630 0.00 0.00 32.55 1.40
231 232 9.294030 CGCTAAAAGAATGAGAGCAAATTTATT 57.706 29.630 0.00 0.00 32.55 1.40
236 237 8.976986 AAGAATGAGAGCAAATTTATTGTCAC 57.023 30.769 0.00 0.00 0.00 3.67
237 238 8.114331 AGAATGAGAGCAAATTTATTGTCACA 57.886 30.769 0.00 0.00 0.00 3.58
239 240 9.195411 GAATGAGAGCAAATTTATTGTCACAAA 57.805 29.630 0.00 0.00 0.00 2.83
240 241 9.545105 AATGAGAGCAAATTTATTGTCACAAAA 57.455 25.926 0.00 0.00 0.00 2.44
257 258 9.317936 TGTCACAAAATATGATGATCACTAGAC 57.682 33.333 0.00 0.00 0.00 2.59
259 260 8.413229 TCACAAAATATGATGATCACTAGACGA 58.587 33.333 0.00 0.00 0.00 4.20
260 261 8.697960 CACAAAATATGATGATCACTAGACGAG 58.302 37.037 0.00 0.00 0.00 4.18
262 263 8.910666 CAAAATATGATGATCACTAGACGAGAC 58.089 37.037 0.00 0.00 0.00 3.36
263 264 4.740741 ATGATGATCACTAGACGAGACG 57.259 45.455 0.00 0.00 0.00 4.18
265 266 4.189231 TGATGATCACTAGACGAGACGAA 58.811 43.478 0.00 0.00 0.00 3.85
266 267 4.271291 TGATGATCACTAGACGAGACGAAG 59.729 45.833 0.00 0.00 0.00 3.79
267 268 3.858247 TGATCACTAGACGAGACGAAGA 58.142 45.455 0.00 0.00 0.00 2.87
270 271 1.060842 CACTAGACGAGACGAAGACCG 59.939 57.143 0.00 0.00 45.44 4.79
284 285 5.039480 CGAAGACCGTAGTACTCTGAAAA 57.961 43.478 0.00 0.00 0.00 2.29
288 289 3.508762 ACCGTAGTACTCTGAAAATGCG 58.491 45.455 0.00 0.00 0.00 4.73
291 292 3.791887 CGTAGTACTCTGAAAATGCGAGG 59.208 47.826 0.00 0.00 0.00 4.63
292 293 3.963428 AGTACTCTGAAAATGCGAGGT 57.037 42.857 0.00 0.00 0.00 3.85
295 296 2.973945 ACTCTGAAAATGCGAGGTACC 58.026 47.619 2.73 2.73 0.00 3.34
296 297 2.567615 ACTCTGAAAATGCGAGGTACCT 59.432 45.455 16.26 16.26 0.00 3.08
297 298 3.190874 CTCTGAAAATGCGAGGTACCTC 58.809 50.000 29.18 29.18 39.55 3.85
298 299 2.565391 TCTGAAAATGCGAGGTACCTCA 59.435 45.455 35.32 21.86 42.86 3.86
299 300 2.673368 CTGAAAATGCGAGGTACCTCAC 59.327 50.000 35.32 28.49 42.86 3.51
310 311 1.455217 TACCTCACCTCTAGGCGCC 60.455 63.158 21.89 21.89 37.67 6.53
315 316 0.687757 TCACCTCTAGGCGCCAAGAT 60.688 55.000 31.54 10.73 39.32 2.40
317 318 1.070445 CCTCTAGGCGCCAAGATGG 59.930 63.158 31.54 19.25 41.55 3.51
320 321 1.000283 CTCTAGGCGCCAAGATGGTAG 60.000 57.143 31.54 19.13 40.46 3.18
321 322 0.601311 CTAGGCGCCAAGATGGTAGC 60.601 60.000 31.54 9.44 40.46 3.58
323 324 1.048724 AGGCGCCAAGATGGTAGCTA 61.049 55.000 31.54 0.00 40.96 3.32
324 325 0.601311 GGCGCCAAGATGGTAGCTAG 60.601 60.000 24.80 0.00 40.96 3.42
325 326 0.389391 GCGCCAAGATGGTAGCTAGA 59.611 55.000 0.00 0.00 40.46 2.43
327 328 1.000283 CGCCAAGATGGTAGCTAGAGG 60.000 57.143 0.00 0.00 40.46 3.69
329 330 1.000283 CCAAGATGGTAGCTAGAGGCG 60.000 57.143 0.00 0.00 38.25 5.52
331 332 5.165234 CCAAGATGGTAGCTAGAGGCGAG 62.165 56.522 0.00 0.00 38.25 5.03
338 339 1.898154 GCTAGAGGCGAGGGAACAA 59.102 57.895 0.00 0.00 0.00 2.83
339 340 0.249398 GCTAGAGGCGAGGGAACAAA 59.751 55.000 0.00 0.00 0.00 2.83
359 360 1.988834 AAAAATTCCTAGCGGCGGCG 61.989 55.000 28.70 28.70 46.35 6.46
377 378 2.357517 CTGCAAACCCTCGCTCGT 60.358 61.111 0.00 0.00 0.00 4.18
379 380 1.901650 CTGCAAACCCTCGCTCGTTC 61.902 60.000 0.00 0.00 0.00 3.95
380 381 3.011760 GCAAACCCTCGCTCGTTCG 62.012 63.158 0.00 0.00 0.00 3.95
381 382 1.663702 CAAACCCTCGCTCGTTCGT 60.664 57.895 0.00 0.00 0.00 3.85
383 384 0.942884 AAACCCTCGCTCGTTCGTTC 60.943 55.000 0.00 0.00 0.00 3.95
384 385 2.079020 AACCCTCGCTCGTTCGTTCA 62.079 55.000 0.00 0.00 0.00 3.18
387 388 1.729484 CTCGCTCGTTCGTTCAGCA 60.729 57.895 5.53 0.00 32.27 4.41
419 5995 8.390854 AGTAATACTCGTACTCATTTTTGTCG 57.609 34.615 0.00 0.00 0.00 4.35
442 6018 6.148315 TCGTTGAGAAGACGTACTCATTTAGA 59.852 38.462 16.37 11.83 41.71 2.10
444 6020 5.866075 TGAGAAGACGTACTCATTTAGACG 58.134 41.667 13.14 0.00 38.08 4.18
476 6052 6.993786 TTTTTGAACATCAGTACAGTCACA 57.006 33.333 0.00 0.00 0.00 3.58
477 6053 6.993786 TTTTGAACATCAGTACAGTCACAA 57.006 33.333 0.00 0.00 0.00 3.33
478 6054 6.603237 TTTGAACATCAGTACAGTCACAAG 57.397 37.500 0.00 0.00 0.00 3.16
479 6055 4.058124 TGAACATCAGTACAGTCACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
480 6056 2.677199 ACATCAGTACAGTCACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
481 6057 1.391485 CATCAGTACAGTCACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
482 6058 0.673985 TCAGTACAGTCACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
483 6059 1.063806 CAGTACAGTCACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
484 6060 0.673985 AGTACAGTCACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
485 6061 1.273606 AGTACAGTCACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
486 6062 2.492088 AGTACAGTCACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
487 6063 2.680312 ACAGTCACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
488 6064 3.801114 ACAGTCACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
489 6065 3.448686 ACAGTCACAAGCGCTCATATAC 58.551 45.455 12.06 6.05 0.00 1.47
490 6066 3.119137 ACAGTCACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
491 6067 3.243877 CAGTCACAAGCGCTCATATACAC 59.756 47.826 12.06 1.26 0.00 2.90
492 6068 2.216488 GTCACAAGCGCTCATATACACG 59.784 50.000 12.06 0.00 0.00 4.49
496 6072 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
497 6073 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
498 6074 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
499 6075 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
500 6076 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
501 6077 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
502 6078 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
503 6079 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
504 6080 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
505 6081 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
506 6082 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
507 6083 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
508 6084 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
509 6085 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
510 6086 1.217585 CGCGCATACACTCATCCCTG 61.218 60.000 8.75 0.00 0.00 4.45
511 6087 0.104855 GCGCATACACTCATCCCTGA 59.895 55.000 0.30 0.00 0.00 3.86
512 6088 1.473257 GCGCATACACTCATCCCTGAA 60.473 52.381 0.30 0.00 0.00 3.02
513 6089 2.205074 CGCATACACTCATCCCTGAAC 58.795 52.381 0.00 0.00 0.00 3.18
514 6090 2.205074 GCATACACTCATCCCTGAACG 58.795 52.381 0.00 0.00 0.00 3.95
515 6091 2.418746 GCATACACTCATCCCTGAACGT 60.419 50.000 0.00 0.00 0.00 3.99
516 6092 3.448686 CATACACTCATCCCTGAACGTC 58.551 50.000 0.00 0.00 0.00 4.34
517 6093 1.633774 ACACTCATCCCTGAACGTCT 58.366 50.000 0.00 0.00 0.00 4.18
518 6094 1.546476 ACACTCATCCCTGAACGTCTC 59.454 52.381 0.00 0.00 0.00 3.36
519 6095 1.134965 CACTCATCCCTGAACGTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
520 6096 1.272760 ACTCATCCCTGAACGTCTCCT 60.273 52.381 0.00 0.00 0.00 3.69
521 6097 1.407258 CTCATCCCTGAACGTCTCCTC 59.593 57.143 0.00 0.00 0.00 3.71
522 6098 0.461961 CATCCCTGAACGTCTCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
523 6099 0.688087 ATCCCTGAACGTCTCCTCCC 60.688 60.000 0.00 0.00 0.00 4.30
524 6100 1.609501 CCCTGAACGTCTCCTCCCA 60.610 63.158 0.00 0.00 0.00 4.37
525 6101 1.592223 CCTGAACGTCTCCTCCCAC 59.408 63.158 0.00 0.00 0.00 4.61
526 6102 0.900647 CCTGAACGTCTCCTCCCACT 60.901 60.000 0.00 0.00 0.00 4.00
527 6103 0.244994 CTGAACGTCTCCTCCCACTG 59.755 60.000 0.00 0.00 0.00 3.66
528 6104 0.178973 TGAACGTCTCCTCCCACTGA 60.179 55.000 0.00 0.00 0.00 3.41
529 6105 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
530 6106 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
531 6107 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
532 6108 0.898320 CGTCTCCTCCCACTGAATGT 59.102 55.000 0.00 0.00 0.00 2.71
533 6109 2.100197 CGTCTCCTCCCACTGAATGTA 58.900 52.381 0.00 0.00 0.00 2.29
534 6110 2.159226 CGTCTCCTCCCACTGAATGTAC 60.159 54.545 0.00 0.00 0.00 2.90
535 6111 2.832129 GTCTCCTCCCACTGAATGTACA 59.168 50.000 0.00 0.00 0.00 2.90
536 6112 3.452627 GTCTCCTCCCACTGAATGTACAT 59.547 47.826 1.41 1.41 0.00 2.29
537 6113 3.706594 TCTCCTCCCACTGAATGTACATC 59.293 47.826 9.23 3.74 0.00 3.06
538 6114 2.430694 TCCTCCCACTGAATGTACATCG 59.569 50.000 9.23 3.66 0.00 3.84
539 6115 2.205074 CTCCCACTGAATGTACATCGC 58.795 52.381 9.23 5.31 0.00 4.58
540 6116 1.134521 TCCCACTGAATGTACATCGCC 60.135 52.381 9.23 2.56 0.00 5.54
541 6117 0.930310 CCACTGAATGTACATCGCCG 59.070 55.000 9.23 3.93 0.00 6.46
542 6118 1.470805 CCACTGAATGTACATCGCCGA 60.471 52.381 9.23 0.00 0.00 5.54
543 6119 2.267426 CACTGAATGTACATCGCCGAA 58.733 47.619 9.23 0.00 0.00 4.30
544 6120 2.670905 CACTGAATGTACATCGCCGAAA 59.329 45.455 9.23 0.00 0.00 3.46
545 6121 3.124466 CACTGAATGTACATCGCCGAAAA 59.876 43.478 9.23 0.00 0.00 2.29
546 6122 3.938963 ACTGAATGTACATCGCCGAAAAT 59.061 39.130 9.23 0.00 0.00 1.82
547 6123 4.034048 ACTGAATGTACATCGCCGAAAATC 59.966 41.667 9.23 0.12 0.00 2.17
548 6124 4.188462 TGAATGTACATCGCCGAAAATCT 58.812 39.130 9.23 0.00 0.00 2.40
549 6125 4.634004 TGAATGTACATCGCCGAAAATCTT 59.366 37.500 9.23 0.00 0.00 2.40
550 6126 4.536364 ATGTACATCGCCGAAAATCTTG 57.464 40.909 1.41 0.00 0.00 3.02
551 6127 3.591023 TGTACATCGCCGAAAATCTTGA 58.409 40.909 0.00 0.00 0.00 3.02
552 6128 3.997681 TGTACATCGCCGAAAATCTTGAA 59.002 39.130 0.00 0.00 0.00 2.69
553 6129 4.452795 TGTACATCGCCGAAAATCTTGAAA 59.547 37.500 0.00 0.00 0.00 2.69
554 6130 4.701956 ACATCGCCGAAAATCTTGAAAT 57.298 36.364 0.00 0.00 0.00 2.17
555 6131 5.811399 ACATCGCCGAAAATCTTGAAATA 57.189 34.783 0.00 0.00 0.00 1.40
556 6132 6.189677 ACATCGCCGAAAATCTTGAAATAA 57.810 33.333 0.00 0.00 0.00 1.40
557 6133 6.616947 ACATCGCCGAAAATCTTGAAATAAA 58.383 32.000 0.00 0.00 0.00 1.40
558 6134 7.257722 ACATCGCCGAAAATCTTGAAATAAAT 58.742 30.769 0.00 0.00 0.00 1.40
559 6135 7.432252 ACATCGCCGAAAATCTTGAAATAAATC 59.568 33.333 0.00 0.00 0.00 2.17
560 6136 6.262601 TCGCCGAAAATCTTGAAATAAATCC 58.737 36.000 0.00 0.00 0.00 3.01
561 6137 6.033341 CGCCGAAAATCTTGAAATAAATCCA 58.967 36.000 0.00 0.00 0.00 3.41
562 6138 6.197096 CGCCGAAAATCTTGAAATAAATCCAG 59.803 38.462 0.00 0.00 0.00 3.86
563 6139 7.257722 GCCGAAAATCTTGAAATAAATCCAGA 58.742 34.615 0.00 0.00 0.00 3.86
564 6140 7.759433 GCCGAAAATCTTGAAATAAATCCAGAA 59.241 33.333 0.00 0.00 0.00 3.02
565 6141 9.638239 CCGAAAATCTTGAAATAAATCCAGAAA 57.362 29.630 0.00 0.00 0.00 2.52
580 6156 8.450578 AAATCCAGAAATAAATACGAGCATCA 57.549 30.769 0.00 0.00 33.17 3.07
581 6157 7.664082 ATCCAGAAATAAATACGAGCATCAG 57.336 36.000 0.00 0.00 33.17 2.90
582 6158 5.991606 TCCAGAAATAAATACGAGCATCAGG 59.008 40.000 0.00 0.00 33.17 3.86
583 6159 5.991606 CCAGAAATAAATACGAGCATCAGGA 59.008 40.000 0.00 0.00 33.17 3.86
584 6160 6.652481 CCAGAAATAAATACGAGCATCAGGAT 59.348 38.462 0.00 0.00 33.17 3.24
585 6161 7.173907 CCAGAAATAAATACGAGCATCAGGATT 59.826 37.037 0.00 0.00 33.17 3.01
586 6162 8.562892 CAGAAATAAATACGAGCATCAGGATTT 58.437 33.333 0.00 0.00 36.58 2.17
587 6163 9.778741 AGAAATAAATACGAGCATCAGGATTTA 57.221 29.630 0.00 0.00 38.12 1.40
591 6167 6.619801 AATACGAGCATCAGGATTTAAACC 57.380 37.500 0.00 0.00 33.17 3.27
592 6168 4.222124 ACGAGCATCAGGATTTAAACCT 57.778 40.909 0.00 0.00 38.40 3.50
599 6175 2.231716 AGGATTTAAACCTGGTGGGC 57.768 50.000 0.00 0.00 39.10 5.36
600 6176 1.716503 AGGATTTAAACCTGGTGGGCT 59.283 47.619 0.00 0.00 39.10 5.19
601 6177 1.824852 GGATTTAAACCTGGTGGGCTG 59.175 52.381 0.00 0.00 39.10 4.85
602 6178 1.824852 GATTTAAACCTGGTGGGCTGG 59.175 52.381 0.00 0.00 39.10 4.85
603 6179 0.178947 TTTAAACCTGGTGGGCTGGG 60.179 55.000 0.00 0.00 39.10 4.45
604 6180 2.087857 TTAAACCTGGTGGGCTGGGG 62.088 60.000 0.00 0.00 39.10 4.96
605 6181 4.938756 AACCTGGTGGGCTGGGGA 62.939 66.667 0.00 0.00 39.10 4.81
606 6182 4.701437 ACCTGGTGGGCTGGGGAT 62.701 66.667 0.00 0.00 39.10 3.85
607 6183 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
608 6184 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
622 6198 2.160721 GGATACCACAGTCCCTCTGA 57.839 55.000 1.79 0.00 46.27 3.27
623 6199 1.757699 GGATACCACAGTCCCTCTGAC 59.242 57.143 1.79 0.00 46.27 3.51
624 6200 1.757699 GATACCACAGTCCCTCTGACC 59.242 57.143 1.79 0.00 45.68 4.02
625 6201 0.485543 TACCACAGTCCCTCTGACCA 59.514 55.000 1.79 0.00 45.68 4.02
626 6202 0.178891 ACCACAGTCCCTCTGACCAT 60.179 55.000 1.79 0.00 45.68 3.55
627 6203 0.987294 CCACAGTCCCTCTGACCATT 59.013 55.000 1.79 0.00 45.68 3.16
628 6204 1.065854 CCACAGTCCCTCTGACCATTC 60.066 57.143 1.79 0.00 45.68 2.67
629 6205 1.625315 CACAGTCCCTCTGACCATTCA 59.375 52.381 1.79 0.00 45.68 2.57
630 6206 2.038952 CACAGTCCCTCTGACCATTCAA 59.961 50.000 1.79 0.00 45.68 2.69
631 6207 2.039084 ACAGTCCCTCTGACCATTCAAC 59.961 50.000 1.79 0.00 45.68 3.18
632 6208 1.630878 AGTCCCTCTGACCATTCAACC 59.369 52.381 0.00 0.00 45.68 3.77
633 6209 1.351017 GTCCCTCTGACCATTCAACCA 59.649 52.381 0.00 0.00 38.09 3.67
634 6210 1.351017 TCCCTCTGACCATTCAACCAC 59.649 52.381 0.00 0.00 0.00 4.16
635 6211 1.073763 CCCTCTGACCATTCAACCACA 59.926 52.381 0.00 0.00 0.00 4.17
636 6212 2.430465 CCTCTGACCATTCAACCACAG 58.570 52.381 0.00 0.00 0.00 3.66
637 6213 2.430465 CTCTGACCATTCAACCACAGG 58.570 52.381 0.00 0.00 0.00 4.00
638 6214 1.774254 TCTGACCATTCAACCACAGGT 59.226 47.619 0.00 0.00 37.65 4.00
649 6225 2.840974 CCACAGGTTGGTTCGCTAG 58.159 57.895 0.00 0.00 41.10 3.42
650 6226 0.673644 CCACAGGTTGGTTCGCTAGG 60.674 60.000 0.00 0.00 41.10 3.02
651 6227 1.003718 ACAGGTTGGTTCGCTAGGC 60.004 57.895 0.00 0.00 0.00 3.93
909 6493 1.241990 TAGGCTCGTTCGTCTGCACT 61.242 55.000 0.00 0.00 0.00 4.40
915 6499 4.600576 TTCGTCTGCACTGGCGCA 62.601 61.111 10.83 0.00 45.35 6.09
1084 6671 7.624360 ATCTCTCAATGATCGGTAGTAGATC 57.376 40.000 0.00 0.00 43.45 2.75
1094 6681 1.964933 GGTAGTAGATCTGTCCCAGCC 59.035 57.143 5.18 0.00 0.00 4.85
1097 6684 2.952116 AGTAGATCTGTCCCAGCCTAC 58.048 52.381 5.18 11.95 37.48 3.18
1099 6686 0.033011 AGATCTGTCCCAGCCTACGT 60.033 55.000 0.00 0.00 0.00 3.57
1103 6690 0.320374 CTGTCCCAGCCTACGTTCAA 59.680 55.000 0.00 0.00 0.00 2.69
1132 6719 3.502356 TGTTCGCCCCCTTTAATTTTCT 58.498 40.909 0.00 0.00 0.00 2.52
1193 6780 1.719780 GTCTGTTTGTCTAACTCGGCG 59.280 52.381 0.00 0.00 37.64 6.46
1238 6825 3.736227 TTGTGGGGGAATAGGAGGATA 57.264 47.619 0.00 0.00 0.00 2.59
1239 6826 3.275848 TGTGGGGGAATAGGAGGATAG 57.724 52.381 0.00 0.00 0.00 2.08
1240 6827 2.801394 TGTGGGGGAATAGGAGGATAGA 59.199 50.000 0.00 0.00 0.00 1.98
1271 6858 1.962807 TGCCCTTGAATCCAACTGTTG 59.037 47.619 13.50 13.50 0.00 3.33
1272 6859 2.238521 GCCCTTGAATCCAACTGTTGA 58.761 47.619 21.49 8.39 0.00 3.18
1286 6910 2.624838 ACTGTTGACTTGCCAGGAAATG 59.375 45.455 0.00 0.00 0.00 2.32
1316 6940 7.325660 AGAGATAACGTAAACGAACTGGATA 57.674 36.000 9.86 0.00 43.02 2.59
1353 6977 5.957842 TGTGAATTGTATCCCACTGTTTC 57.042 39.130 0.00 0.00 0.00 2.78
1357 6981 2.489938 TGTATCCCACTGTTTCCTGC 57.510 50.000 0.00 0.00 0.00 4.85
1376 7004 2.005451 GCACTCATCAGTCACCATGTC 58.995 52.381 0.00 0.00 0.00 3.06
1404 7032 2.511600 GGTGGACCGATTGCTCCG 60.512 66.667 0.00 0.00 0.00 4.63
1458 7092 3.303938 AGATGATGATTCTCGAGGTGGT 58.696 45.455 13.56 0.00 0.00 4.16
1467 7101 1.546029 TCTCGAGGTGGTGAAGTGATG 59.454 52.381 13.56 0.00 0.00 3.07
1545 7179 1.003580 ACCATTGTGTGTGCTAGAGGG 59.996 52.381 0.00 0.00 0.00 4.30
1546 7180 1.003580 CCATTGTGTGTGCTAGAGGGT 59.996 52.381 0.00 0.00 0.00 4.34
1563 7197 3.242011 AGGGTTGCACAGATTTGGATTT 58.758 40.909 0.00 0.00 0.00 2.17
1609 7243 7.416154 TTTCTTGACGAATAAACACCTACAG 57.584 36.000 0.00 0.00 0.00 2.74
1628 7262 9.097946 ACCTACAGTAGTTATGTTAGGAAGTTT 57.902 33.333 6.84 0.00 31.46 2.66
1674 7308 4.443063 GCCCGTTTAATGTTTTGTGACTTC 59.557 41.667 0.00 0.00 0.00 3.01
1708 7342 2.028567 AGCACTTGAGCTGTAAGTCTCC 60.029 50.000 9.41 3.33 44.66 3.71
1710 7344 3.583806 CACTTGAGCTGTAAGTCTCCAG 58.416 50.000 9.41 0.00 36.29 3.86
1751 7385 7.398024 AGAGAAAGTGTATACAGGCTTCAATT 58.602 34.615 5.62 0.00 0.00 2.32
1752 7386 7.885399 AGAGAAAGTGTATACAGGCTTCAATTT 59.115 33.333 5.62 0.00 0.00 1.82
1763 7397 1.405105 GCTTCAATTTATCGGCTGCCA 59.595 47.619 20.29 6.38 0.00 4.92
1901 7583 9.057089 CCCTATCCAGATGTACATTTTTAGTTC 57.943 37.037 10.30 0.00 0.00 3.01
2082 7766 6.259608 CACACTTCCTCAAAAGCTCCTATATG 59.740 42.308 0.00 0.00 0.00 1.78
2089 7773 4.476846 TCAAAAGCTCCTATATGGTCCCAA 59.523 41.667 0.00 0.00 37.07 4.12
2096 7780 5.749462 CTCCTATATGGTCCCAATCCATTC 58.251 45.833 2.79 0.00 42.24 2.67
2099 7783 0.819259 ATGGTCCCAATCCATTCGCG 60.819 55.000 0.00 0.00 42.24 5.87
2217 7909 3.708631 ACTATCCTGCTGTGCTTGTATCT 59.291 43.478 0.00 0.00 0.00 1.98
2261 7953 1.930371 GCCCGAATGTCACTGCAAAAC 60.930 52.381 0.00 0.00 0.00 2.43
2373 8065 5.011586 TGAATGGAGATCACATCAGCAAAA 58.988 37.500 0.00 0.00 0.00 2.44
2507 8201 5.542616 CTGTTACAGCAGGAATTGAAGAG 57.457 43.478 0.00 0.00 33.11 2.85
2513 8207 2.305343 AGCAGGAATTGAAGAGCTCACT 59.695 45.455 17.77 1.58 32.21 3.41
2532 8226 0.387929 TCTTTATCTGCCCGCTACCG 59.612 55.000 0.00 0.00 0.00 4.02
2826 8538 3.625211 GCTTAGGGTCCTGAGAGTGTCTA 60.625 52.174 12.29 0.00 32.20 2.59
2875 8587 4.023107 CAGCAATGCTCCAAATATCTCCAG 60.023 45.833 4.03 0.00 36.40 3.86
2882 8594 5.649395 TGCTCCAAATATCTCCAGTTTTCAG 59.351 40.000 0.00 0.00 0.00 3.02
3087 8808 6.998802 AGTTTAGATGAGTACAGACTTGCTT 58.001 36.000 0.00 0.00 35.45 3.91
3108 8832 7.614674 GCTTTTTGCATATAATAGCTGACAC 57.385 36.000 0.00 0.00 42.31 3.67
3187 8920 0.391130 TCGCAAATTCCTCCACCTCG 60.391 55.000 0.00 0.00 0.00 4.63
3343 9079 6.097696 TGCAAGCATACCTAGTGTCTATTGTA 59.902 38.462 0.00 0.00 0.00 2.41
3394 9130 3.881688 TCTATGTAGGTACGTCAGCCTTC 59.118 47.826 10.80 7.30 36.38 3.46
3417 9153 4.514441 CCATGGAGCATGAGTCAGTTATTC 59.486 45.833 5.56 0.00 43.81 1.75
3776 9520 2.926200 CTCCAGCGTGATGTTAGAAGTG 59.074 50.000 0.00 0.00 0.00 3.16
3853 9597 1.882623 TGTTGCGCATGTTGAACCATA 59.117 42.857 12.75 0.00 0.00 2.74
3871 9615 8.952278 TGAACCATACCAAATTGTATTGTCTAC 58.048 33.333 0.00 0.00 29.59 2.59
3889 9633 2.738147 CGATGCGTCGTCTTTTCCT 58.262 52.632 20.17 0.00 42.78 3.36
3933 9678 7.681939 TGATAGTTGTTGGTTTTCATAGGTC 57.318 36.000 0.00 0.00 0.00 3.85
4009 9754 6.204359 ACTATAGTAATGTTTACCGCAGACG 58.796 40.000 2.75 0.00 39.67 4.18
4049 9794 1.572085 CTGAAAGCAGGCGGTCACAG 61.572 60.000 0.00 0.00 38.51 3.66
4066 9811 5.450412 GGTCACAGAAGATTTTGTTGCTTCA 60.450 40.000 0.00 0.00 40.26 3.02
4117 9862 6.468956 GCATGTTATTTACTCGTGGATGTTTG 59.531 38.462 0.00 0.00 0.00 2.93
4120 9865 1.434555 TTACTCGTGGATGTTTGCCG 58.565 50.000 0.00 0.00 0.00 5.69
4143 9888 6.323225 CCGGAAATATTATACTCCCTCCGTAT 59.677 42.308 15.92 0.00 42.31 3.06
4229 9974 7.934120 AGGGAATACTAATTTGTGCTAGTGATC 59.066 37.037 2.59 0.00 0.00 2.92
4230 9975 7.715249 GGGAATACTAATTTGTGCTAGTGATCA 59.285 37.037 2.59 0.00 0.00 2.92
4231 9976 8.768955 GGAATACTAATTTGTGCTAGTGATCAG 58.231 37.037 0.00 0.00 0.00 2.90
4232 9977 7.721286 ATACTAATTTGTGCTAGTGATCAGC 57.279 36.000 0.00 0.00 39.56 4.26
4233 9978 5.738909 ACTAATTTGTGCTAGTGATCAGCT 58.261 37.500 0.00 0.00 39.83 4.24
4263 10012 3.192844 CAGCTGCCTTTGAATCTCATTGT 59.807 43.478 0.00 0.00 0.00 2.71
4280 10029 4.998033 TCATTGTTTTTGTGCATGCATGAT 59.002 33.333 30.64 7.59 0.00 2.45
4347 10096 6.198639 AGCCTCCTACTAAATTCTCTCTCAA 58.801 40.000 0.00 0.00 0.00 3.02
4367 10117 7.967908 TCTCAAGAGTTGTATTTCTTCCTTCT 58.032 34.615 0.00 0.00 31.53 2.85
4442 10192 6.213397 TCCAACCAATCTCTCTTTGATACTGA 59.787 38.462 0.00 0.00 0.00 3.41
4448 10198 8.786898 CCAATCTCTCTTTGATACTGAAAAACA 58.213 33.333 0.00 0.00 0.00 2.83
4560 10467 0.694771 AAGAGAGTTGCCCATGAGCA 59.305 50.000 0.00 0.00 42.17 4.26
4582 10815 0.451783 GCCATGCTTAAAGGTGGACG 59.548 55.000 4.37 0.00 33.53 4.79
4621 10854 5.541845 TGGATAGACCTAAGCAAATGATCG 58.458 41.667 0.00 0.00 39.86 3.69
4624 10857 4.744795 AGACCTAAGCAAATGATCGTCT 57.255 40.909 0.00 0.00 0.00 4.18
4644 10877 5.395778 CGTCTAACGATCGACCTTTATTCAG 59.604 44.000 24.34 0.00 46.05 3.02
4682 10915 7.681939 ATTAGAACATACACGAACCACAAAT 57.318 32.000 0.00 0.00 0.00 2.32
4684 10917 4.819630 AGAACATACACGAACCACAAATGT 59.180 37.500 0.00 0.00 0.00 2.71
4685 10918 4.742438 ACATACACGAACCACAAATGTC 57.258 40.909 0.00 0.00 0.00 3.06
4710 12252 9.976511 TCTCTAATATAACCAAAAGTACATCCG 57.023 33.333 0.00 0.00 0.00 4.18
4714 12256 8.810990 AATATAACCAAAAGTACATCCGGAAA 57.189 30.769 9.01 0.00 0.00 3.13
4730 12272 1.000955 GGAAACCTTCGAGTCTCAGCA 59.999 52.381 0.00 0.00 0.00 4.41
4791 12333 1.970640 ACCAATGCCAACCCTTCTTTC 59.029 47.619 0.00 0.00 0.00 2.62
4811 12353 3.881220 TCCTTCCGAACTTCAACAAACT 58.119 40.909 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.127171 CCCAGGTACATTCACCGATTAAG 58.873 47.826 0.00 0.00 43.84 1.85
1 2 3.683281 GCCCAGGTACATTCACCGATTAA 60.683 47.826 0.00 0.00 43.84 1.40
3 4 1.408266 GCCCAGGTACATTCACCGATT 60.408 52.381 0.00 0.00 43.84 3.34
5 6 0.907704 AGCCCAGGTACATTCACCGA 60.908 55.000 0.00 0.00 43.84 4.69
6 7 0.828022 TAGCCCAGGTACATTCACCG 59.172 55.000 0.00 0.00 43.84 4.94
7 8 1.141053 CCTAGCCCAGGTACATTCACC 59.859 57.143 0.00 0.00 39.91 4.02
8 9 1.141053 CCCTAGCCCAGGTACATTCAC 59.859 57.143 0.00 0.00 43.80 3.18
9 10 1.009060 TCCCTAGCCCAGGTACATTCA 59.991 52.381 0.00 0.00 43.80 2.57
11 12 2.057922 CATCCCTAGCCCAGGTACATT 58.942 52.381 0.00 0.00 43.80 2.71
13 14 0.639943 TCATCCCTAGCCCAGGTACA 59.360 55.000 0.00 0.00 43.80 2.90
14 15 1.903183 GATCATCCCTAGCCCAGGTAC 59.097 57.143 1.53 0.00 43.80 3.34
15 16 1.203313 GGATCATCCCTAGCCCAGGTA 60.203 57.143 0.00 0.00 43.80 3.08
17 18 2.381445 GGATCATCCCTAGCCCAGG 58.619 63.158 0.00 0.00 45.07 4.45
27 28 3.560882 CCTGCAATTCTAGGGGATCATCC 60.561 52.174 0.00 0.00 35.23 3.51
28 29 3.328931 TCCTGCAATTCTAGGGGATCATC 59.671 47.826 0.00 0.00 34.76 2.92
29 30 3.073650 GTCCTGCAATTCTAGGGGATCAT 59.926 47.826 0.00 0.00 34.76 2.45
30 31 2.439507 GTCCTGCAATTCTAGGGGATCA 59.560 50.000 0.00 0.00 34.76 2.92
31 32 2.439507 TGTCCTGCAATTCTAGGGGATC 59.560 50.000 5.00 0.00 34.76 3.36
32 33 2.492025 TGTCCTGCAATTCTAGGGGAT 58.508 47.619 5.00 0.00 34.76 3.85
34 35 2.808202 CGATGTCCTGCAATTCTAGGGG 60.808 54.545 5.00 0.00 34.76 4.79
37 38 3.459232 TCCGATGTCCTGCAATTCTAG 57.541 47.619 0.00 0.00 0.00 2.43
40 41 2.289002 GTGATCCGATGTCCTGCAATTC 59.711 50.000 0.00 0.00 0.00 2.17
41 42 2.292267 GTGATCCGATGTCCTGCAATT 58.708 47.619 0.00 0.00 0.00 2.32
42 43 1.210234 TGTGATCCGATGTCCTGCAAT 59.790 47.619 0.00 0.00 0.00 3.56
46 47 4.194640 AGATTTTGTGATCCGATGTCCTG 58.805 43.478 0.00 0.00 0.00 3.86
47 48 4.446371 GAGATTTTGTGATCCGATGTCCT 58.554 43.478 0.00 0.00 0.00 3.85
50 51 3.941483 GTGGAGATTTTGTGATCCGATGT 59.059 43.478 0.00 0.00 34.39 3.06
51 52 3.313526 GGTGGAGATTTTGTGATCCGATG 59.686 47.826 0.00 0.00 34.39 3.84
54 55 2.710377 TGGTGGAGATTTTGTGATCCG 58.290 47.619 0.00 0.00 34.39 4.18
58 59 4.665451 ACATCATGGTGGAGATTTTGTGA 58.335 39.130 11.45 0.00 0.00 3.58
60 61 3.691118 CGACATCATGGTGGAGATTTTGT 59.309 43.478 11.45 0.00 0.00 2.83
61 62 3.940852 TCGACATCATGGTGGAGATTTTG 59.059 43.478 11.45 0.00 0.00 2.44
63 64 3.912496 TCGACATCATGGTGGAGATTT 57.088 42.857 11.45 0.00 0.00 2.17
65 66 2.967887 TCATCGACATCATGGTGGAGAT 59.032 45.455 11.45 11.33 0.00 2.75
66 67 2.387757 TCATCGACATCATGGTGGAGA 58.612 47.619 11.45 9.41 0.00 3.71
67 68 2.896745 TCATCGACATCATGGTGGAG 57.103 50.000 11.45 3.71 0.00 3.86
73 74 5.535043 TGAAGTGTTTCATCGACATCATG 57.465 39.130 0.00 0.00 38.37 3.07
74 75 5.702670 AGTTGAAGTGTTTCATCGACATCAT 59.297 36.000 0.00 0.00 42.60 2.45
81 82 5.155509 TGTGAAGTTGAAGTGTTTCATCG 57.844 39.130 0.00 0.00 42.60 3.84
83 84 7.156876 TCTTTGTGAAGTTGAAGTGTTTCAT 57.843 32.000 0.00 0.00 42.60 2.57
84 85 6.567687 TCTTTGTGAAGTTGAAGTGTTTCA 57.432 33.333 0.00 0.00 41.44 2.69
86 87 7.206687 TGTTTCTTTGTGAAGTTGAAGTGTTT 58.793 30.769 0.00 0.00 35.89 2.83
89 90 7.009540 GGATTGTTTCTTTGTGAAGTTGAAGTG 59.990 37.037 0.00 0.00 35.89 3.16
91 92 7.035004 TGGATTGTTTCTTTGTGAAGTTGAAG 58.965 34.615 0.00 0.00 35.89 3.02
94 95 6.589523 TGTTGGATTGTTTCTTTGTGAAGTTG 59.410 34.615 0.00 0.00 35.89 3.16
95 96 6.696411 TGTTGGATTGTTTCTTTGTGAAGTT 58.304 32.000 0.00 0.00 35.89 2.66
97 98 5.750067 CCTGTTGGATTGTTTCTTTGTGAAG 59.250 40.000 0.00 0.00 33.75 3.02
102 103 6.818142 AGTTTTCCTGTTGGATTGTTTCTTTG 59.182 34.615 0.00 0.00 42.81 2.77
104 105 6.544928 AGTTTTCCTGTTGGATTGTTTCTT 57.455 33.333 0.00 0.00 42.81 2.52
105 106 6.544928 AAGTTTTCCTGTTGGATTGTTTCT 57.455 33.333 0.00 0.00 42.81 2.52
107 108 6.593770 GTCAAAGTTTTCCTGTTGGATTGTTT 59.406 34.615 0.00 0.00 42.81 2.83
110 111 5.519927 GTGTCAAAGTTTTCCTGTTGGATTG 59.480 40.000 0.00 0.00 42.81 2.67
112 113 4.709397 TGTGTCAAAGTTTTCCTGTTGGAT 59.291 37.500 0.00 0.00 42.81 3.41
114 115 4.173256 GTGTGTCAAAGTTTTCCTGTTGG 58.827 43.478 0.00 0.00 0.00 3.77
115 116 4.173256 GGTGTGTCAAAGTTTTCCTGTTG 58.827 43.478 0.00 0.00 0.00 3.33
116 117 3.829601 TGGTGTGTCAAAGTTTTCCTGTT 59.170 39.130 0.00 0.00 0.00 3.16
117 118 3.426615 TGGTGTGTCAAAGTTTTCCTGT 58.573 40.909 0.00 0.00 0.00 4.00
118 119 4.173256 GTTGGTGTGTCAAAGTTTTCCTG 58.827 43.478 0.00 0.00 0.00 3.86
119 120 3.194755 GGTTGGTGTGTCAAAGTTTTCCT 59.805 43.478 0.00 0.00 0.00 3.36
120 121 3.194755 AGGTTGGTGTGTCAAAGTTTTCC 59.805 43.478 0.00 0.00 0.00 3.13
125 126 4.595986 AGTTTAGGTTGGTGTGTCAAAGT 58.404 39.130 0.00 0.00 0.00 2.66
126 127 4.638421 TGAGTTTAGGTTGGTGTGTCAAAG 59.362 41.667 0.00 0.00 0.00 2.77
127 128 4.590918 TGAGTTTAGGTTGGTGTGTCAAA 58.409 39.130 0.00 0.00 0.00 2.69
130 131 4.385825 TGATGAGTTTAGGTTGGTGTGTC 58.614 43.478 0.00 0.00 0.00 3.67
131 132 4.102524 TCTGATGAGTTTAGGTTGGTGTGT 59.897 41.667 0.00 0.00 0.00 3.72
132 133 4.641396 TCTGATGAGTTTAGGTTGGTGTG 58.359 43.478 0.00 0.00 0.00 3.82
133 134 4.974645 TCTGATGAGTTTAGGTTGGTGT 57.025 40.909 0.00 0.00 0.00 4.16
134 135 4.568359 CGATCTGATGAGTTTAGGTTGGTG 59.432 45.833 0.00 0.00 0.00 4.17
135 136 4.466370 TCGATCTGATGAGTTTAGGTTGGT 59.534 41.667 0.00 0.00 0.00 3.67
137 138 6.968131 TTTCGATCTGATGAGTTTAGGTTG 57.032 37.500 0.00 0.00 0.00 3.77
139 140 9.482627 GATTATTTCGATCTGATGAGTTTAGGT 57.517 33.333 0.00 0.00 0.00 3.08
154 155 4.169508 CTCGCAGATCCGATTATTTCGAT 58.830 43.478 0.00 0.00 43.88 3.59
155 156 3.565516 CTCGCAGATCCGATTATTTCGA 58.434 45.455 0.00 0.00 43.88 3.71
156 157 2.663602 CCTCGCAGATCCGATTATTTCG 59.336 50.000 0.00 0.00 41.72 3.46
157 158 3.675698 GTCCTCGCAGATCCGATTATTTC 59.324 47.826 0.00 0.00 36.54 2.17
159 160 2.628178 TGTCCTCGCAGATCCGATTATT 59.372 45.455 0.00 0.00 36.54 1.40
160 161 2.230025 CTGTCCTCGCAGATCCGATTAT 59.770 50.000 0.00 0.00 38.70 1.28
161 162 1.609072 CTGTCCTCGCAGATCCGATTA 59.391 52.381 0.00 0.00 38.70 1.75
162 163 0.387202 CTGTCCTCGCAGATCCGATT 59.613 55.000 0.00 0.00 38.70 3.34
163 164 0.466372 TCTGTCCTCGCAGATCCGAT 60.466 55.000 0.00 0.00 40.23 4.18
164 165 0.679960 TTCTGTCCTCGCAGATCCGA 60.680 55.000 0.00 0.00 43.99 4.55
165 166 0.173481 TTTCTGTCCTCGCAGATCCG 59.827 55.000 0.00 0.00 43.99 4.18
166 167 2.003301 GTTTTCTGTCCTCGCAGATCC 58.997 52.381 0.00 0.00 43.99 3.36
168 169 2.564947 AGAGTTTTCTGTCCTCGCAGAT 59.435 45.455 0.00 0.00 43.99 2.90
171 172 1.964223 AGAGAGTTTTCTGTCCTCGCA 59.036 47.619 0.00 0.00 40.55 5.10
172 173 2.734276 AGAGAGTTTTCTGTCCTCGC 57.266 50.000 0.00 0.00 40.55 5.03
174 175 5.244178 TGAGGTTAGAGAGTTTTCTGTCCTC 59.756 44.000 15.08 15.08 42.27 3.71
175 176 5.148502 TGAGGTTAGAGAGTTTTCTGTCCT 58.851 41.667 0.00 0.00 40.55 3.85
176 177 5.470047 TGAGGTTAGAGAGTTTTCTGTCC 57.530 43.478 0.00 0.00 40.55 4.02
179 180 6.459066 TGACATGAGGTTAGAGAGTTTTCTG 58.541 40.000 0.00 0.00 32.53 3.02
180 181 6.672266 TGACATGAGGTTAGAGAGTTTTCT 57.328 37.500 0.00 0.00 36.01 2.52
181 182 6.254589 CGATGACATGAGGTTAGAGAGTTTTC 59.745 42.308 0.00 0.00 0.00 2.29
186 187 3.317711 AGCGATGACATGAGGTTAGAGAG 59.682 47.826 0.00 0.00 0.00 3.20
187 188 3.291584 AGCGATGACATGAGGTTAGAGA 58.708 45.455 0.00 0.00 0.00 3.10
189 190 5.592104 TTTAGCGATGACATGAGGTTAGA 57.408 39.130 0.00 0.00 0.00 2.10
193 194 4.471904 TCTTTTAGCGATGACATGAGGT 57.528 40.909 0.00 0.00 0.00 3.85
196 197 6.340522 TCTCATTCTTTTAGCGATGACATGA 58.659 36.000 0.00 0.00 0.00 3.07
198 199 5.236047 GCTCTCATTCTTTTAGCGATGACAT 59.764 40.000 0.00 0.00 0.00 3.06
200 201 4.568359 TGCTCTCATTCTTTTAGCGATGAC 59.432 41.667 0.00 0.00 35.95 3.06
203 204 6.690194 ATTTGCTCTCATTCTTTTAGCGAT 57.310 33.333 0.00 0.00 35.95 4.58
205 206 8.847444 ATAAATTTGCTCTCATTCTTTTAGCG 57.153 30.769 0.00 0.00 35.95 4.26
210 211 9.415544 GTGACAATAAATTTGCTCTCATTCTTT 57.584 29.630 0.00 0.00 0.00 2.52
213 214 8.746922 TTGTGACAATAAATTTGCTCTCATTC 57.253 30.769 0.00 0.00 0.00 2.67
214 215 9.545105 TTTTGTGACAATAAATTTGCTCTCATT 57.455 25.926 0.00 0.00 0.00 2.57
215 216 9.715121 ATTTTGTGACAATAAATTTGCTCTCAT 57.285 25.926 0.00 0.00 0.00 2.90
230 231 9.889128 TCTAGTGATCATCATATTTTGTGACAA 57.111 29.630 0.00 0.00 0.00 3.18
231 232 9.317936 GTCTAGTGATCATCATATTTTGTGACA 57.682 33.333 0.00 0.00 0.00 3.58
232 233 8.483218 CGTCTAGTGATCATCATATTTTGTGAC 58.517 37.037 0.00 0.00 0.00 3.67
236 237 8.910666 GTCTCGTCTAGTGATCATCATATTTTG 58.089 37.037 0.00 0.00 0.00 2.44
237 238 7.805542 CGTCTCGTCTAGTGATCATCATATTTT 59.194 37.037 0.00 0.00 0.00 1.82
239 240 6.651225 TCGTCTCGTCTAGTGATCATCATATT 59.349 38.462 0.00 0.00 0.00 1.28
240 241 6.166982 TCGTCTCGTCTAGTGATCATCATAT 58.833 40.000 0.00 0.00 0.00 1.78
242 243 4.381411 TCGTCTCGTCTAGTGATCATCAT 58.619 43.478 0.00 0.00 0.00 2.45
243 244 3.793559 TCGTCTCGTCTAGTGATCATCA 58.206 45.455 0.00 0.00 0.00 3.07
247 248 3.001533 GGTCTTCGTCTCGTCTAGTGATC 59.998 52.174 0.00 0.00 0.00 2.92
248 249 2.937799 GGTCTTCGTCTCGTCTAGTGAT 59.062 50.000 0.00 0.00 0.00 3.06
262 263 4.675190 TTTCAGAGTACTACGGTCTTCG 57.325 45.455 0.00 0.00 45.88 3.79
263 264 5.288952 GCATTTTCAGAGTACTACGGTCTTC 59.711 44.000 0.00 0.00 0.00 2.87
265 266 4.674623 CGCATTTTCAGAGTACTACGGTCT 60.675 45.833 0.00 0.00 0.00 3.85
266 267 3.546670 CGCATTTTCAGAGTACTACGGTC 59.453 47.826 0.00 0.00 0.00 4.79
267 268 3.192001 TCGCATTTTCAGAGTACTACGGT 59.808 43.478 0.00 0.00 0.00 4.83
270 271 4.745649 ACCTCGCATTTTCAGAGTACTAC 58.254 43.478 0.00 0.00 0.00 2.73
274 275 3.767673 AGGTACCTCGCATTTTCAGAGTA 59.232 43.478 9.21 0.00 0.00 2.59
275 276 2.567615 AGGTACCTCGCATTTTCAGAGT 59.432 45.455 9.21 0.00 0.00 3.24
276 277 3.190874 GAGGTACCTCGCATTTTCAGAG 58.809 50.000 25.83 0.00 33.06 3.35
278 279 2.972625 TGAGGTACCTCGCATTTTCAG 58.027 47.619 31.82 0.00 45.48 3.02
298 299 1.690219 CCATCTTGGCGCCTAGAGGT 61.690 60.000 37.27 24.63 37.57 3.85
299 300 1.070445 CCATCTTGGCGCCTAGAGG 59.930 63.158 36.81 36.00 32.03 3.69
300 301 1.000283 CTACCATCTTGGCGCCTAGAG 60.000 57.143 36.81 28.41 42.67 2.43
302 303 0.601311 GCTACCATCTTGGCGCCTAG 60.601 60.000 29.08 29.08 42.67 3.02
303 304 1.048724 AGCTACCATCTTGGCGCCTA 61.049 55.000 29.70 20.51 42.67 3.93
306 307 0.389391 TCTAGCTACCATCTTGGCGC 59.611 55.000 0.00 0.00 42.67 6.53
307 308 1.000283 CCTCTAGCTACCATCTTGGCG 60.000 57.143 0.00 0.00 42.67 5.69
310 311 1.957177 TCGCCTCTAGCTACCATCTTG 59.043 52.381 0.00 0.00 40.39 3.02
315 316 1.152735 CCCTCGCCTCTAGCTACCA 60.153 63.158 0.00 0.00 40.39 3.25
317 318 0.669619 GTTCCCTCGCCTCTAGCTAC 59.330 60.000 0.00 0.00 40.39 3.58
320 321 0.249398 TTTGTTCCCTCGCCTCTAGC 59.751 55.000 0.00 0.00 38.52 3.42
321 322 2.762535 TTTTGTTCCCTCGCCTCTAG 57.237 50.000 0.00 0.00 0.00 2.43
342 343 2.895372 CGCCGCCGCTAGGAATTT 60.895 61.111 0.00 0.00 41.02 1.82
359 360 3.793144 CGAGCGAGGGTTTGCAGC 61.793 66.667 0.00 0.00 36.07 5.25
360 361 1.901650 GAACGAGCGAGGGTTTGCAG 61.902 60.000 0.00 0.00 36.07 4.41
361 362 1.959226 GAACGAGCGAGGGTTTGCA 60.959 57.895 0.00 0.00 36.07 4.08
362 363 2.861006 GAACGAGCGAGGGTTTGC 59.139 61.111 0.00 0.00 0.00 3.68
363 364 1.219522 AACGAACGAGCGAGGGTTTG 61.220 55.000 8.50 0.00 34.42 2.93
364 365 0.942884 GAACGAACGAGCGAGGGTTT 60.943 55.000 8.50 0.00 34.83 3.27
365 366 1.372623 GAACGAACGAGCGAGGGTT 60.373 57.895 8.50 0.00 34.83 4.11
369 370 1.275471 TTGCTGAACGAACGAGCGAG 61.275 55.000 8.50 0.00 35.36 5.03
371 372 0.042535 TTTTGCTGAACGAACGAGCG 60.043 50.000 0.14 0.00 35.36 5.03
373 374 5.440685 ACTTAATTTTGCTGAACGAACGAG 58.559 37.500 0.14 0.00 0.00 4.18
379 380 8.166706 ACGAGTATTACTTAATTTTGCTGAACG 58.833 33.333 0.00 0.00 0.00 3.95
384 385 9.865321 TGAGTACGAGTATTACTTAATTTTGCT 57.135 29.630 0.00 0.00 29.58 3.91
416 5992 3.532892 TGAGTACGTCTTCTCAACGAC 57.467 47.619 13.14 0.00 42.62 4.34
418 5994 6.248839 GTCTAAATGAGTACGTCTTCTCAACG 59.751 42.308 17.41 9.41 42.67 4.10
419 5995 6.248839 CGTCTAAATGAGTACGTCTTCTCAAC 59.751 42.308 17.41 11.69 42.67 3.18
455 6031 5.007626 GCTTGTGACTGTACTGATGTTCAAA 59.992 40.000 6.77 0.00 0.00 2.69
457 6033 4.058124 GCTTGTGACTGTACTGATGTTCA 58.942 43.478 6.77 0.00 0.00 3.18
458 6034 3.121944 CGCTTGTGACTGTACTGATGTTC 59.878 47.826 6.77 0.00 0.00 3.18
459 6035 3.059884 CGCTTGTGACTGTACTGATGTT 58.940 45.455 6.77 0.00 0.00 2.71
460 6036 2.677199 CGCTTGTGACTGTACTGATGT 58.323 47.619 6.77 0.00 0.00 3.06
461 6037 1.391485 GCGCTTGTGACTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
462 6038 1.273606 AGCGCTTGTGACTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
463 6039 0.673985 AGCGCTTGTGACTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
464 6040 1.063806 GAGCGCTTGTGACTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
465 6041 0.673985 TGAGCGCTTGTGACTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
466 6042 1.714794 ATGAGCGCTTGTGACTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
467 6043 3.801114 ATATGAGCGCTTGTGACTGTA 57.199 42.857 13.26 0.00 0.00 2.74
468 6044 2.680312 ATATGAGCGCTTGTGACTGT 57.320 45.000 13.26 0.00 0.00 3.55
469 6045 3.243877 GTGTATATGAGCGCTTGTGACTG 59.756 47.826 13.26 0.00 0.00 3.51
470 6046 3.448686 GTGTATATGAGCGCTTGTGACT 58.551 45.455 13.26 0.00 0.00 3.41
471 6047 2.216488 CGTGTATATGAGCGCTTGTGAC 59.784 50.000 13.26 7.42 0.00 3.67
472 6048 2.459934 CGTGTATATGAGCGCTTGTGA 58.540 47.619 13.26 0.00 0.00 3.58
473 6049 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
474 6050 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
475 6051 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
476 6052 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
477 6053 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
480 6056 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
481 6057 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
482 6058 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
483 6059 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
484 6060 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
485 6061 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
486 6062 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
487 6063 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
488 6064 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
489 6065 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
490 6066 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
491 6067 1.068083 AGGGATGAGTGTATGCGCG 59.932 57.895 0.00 0.00 0.00 6.86
492 6068 0.104855 TCAGGGATGAGTGTATGCGC 59.895 55.000 0.00 0.00 0.00 6.09
493 6069 2.205074 GTTCAGGGATGAGTGTATGCG 58.795 52.381 0.00 0.00 0.00 4.73
494 6070 2.205074 CGTTCAGGGATGAGTGTATGC 58.795 52.381 0.00 0.00 0.00 3.14
495 6071 3.131223 AGACGTTCAGGGATGAGTGTATG 59.869 47.826 0.00 0.00 0.00 2.39
496 6072 3.366396 AGACGTTCAGGGATGAGTGTAT 58.634 45.455 0.00 0.00 0.00 2.29
497 6073 2.753452 GAGACGTTCAGGGATGAGTGTA 59.247 50.000 0.00 0.00 0.00 2.90
498 6074 1.546476 GAGACGTTCAGGGATGAGTGT 59.454 52.381 0.00 0.00 0.00 3.55
499 6075 1.134965 GGAGACGTTCAGGGATGAGTG 60.135 57.143 0.00 0.00 0.00 3.51
500 6076 1.187087 GGAGACGTTCAGGGATGAGT 58.813 55.000 0.00 0.00 0.00 3.41
501 6077 1.407258 GAGGAGACGTTCAGGGATGAG 59.593 57.143 0.00 0.00 0.00 2.90
502 6078 1.475403 GAGGAGACGTTCAGGGATGA 58.525 55.000 0.00 0.00 0.00 2.92
503 6079 0.461961 GGAGGAGACGTTCAGGGATG 59.538 60.000 0.00 0.00 0.00 3.51
504 6080 0.688087 GGGAGGAGACGTTCAGGGAT 60.688 60.000 0.00 0.00 0.00 3.85
505 6081 1.305046 GGGAGGAGACGTTCAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
506 6082 1.609501 TGGGAGGAGACGTTCAGGG 60.610 63.158 0.00 0.00 0.00 4.45
507 6083 0.900647 AGTGGGAGGAGACGTTCAGG 60.901 60.000 0.00 0.00 0.00 3.86
508 6084 0.244994 CAGTGGGAGGAGACGTTCAG 59.755 60.000 0.00 0.00 0.00 3.02
509 6085 0.178973 TCAGTGGGAGGAGACGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
510 6086 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
511 6087 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
512 6088 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
513 6089 0.898320 ACATTCAGTGGGAGGAGACG 59.102 55.000 0.00 0.00 0.00 4.18
514 6090 2.832129 TGTACATTCAGTGGGAGGAGAC 59.168 50.000 0.00 0.00 0.00 3.36
515 6091 3.184382 TGTACATTCAGTGGGAGGAGA 57.816 47.619 0.00 0.00 0.00 3.71
516 6092 3.491619 CGATGTACATTCAGTGGGAGGAG 60.492 52.174 10.30 0.00 0.00 3.69
517 6093 2.430694 CGATGTACATTCAGTGGGAGGA 59.569 50.000 10.30 0.00 0.00 3.71
518 6094 2.826428 CGATGTACATTCAGTGGGAGG 58.174 52.381 10.30 0.00 0.00 4.30
519 6095 2.205074 GCGATGTACATTCAGTGGGAG 58.795 52.381 10.30 0.00 0.00 4.30
520 6096 1.134521 GGCGATGTACATTCAGTGGGA 60.135 52.381 10.30 0.00 0.00 4.37
521 6097 1.299541 GGCGATGTACATTCAGTGGG 58.700 55.000 10.30 0.00 0.00 4.61
522 6098 0.930310 CGGCGATGTACATTCAGTGG 59.070 55.000 10.30 0.00 0.00 4.00
523 6099 1.921243 TCGGCGATGTACATTCAGTG 58.079 50.000 10.30 0.11 0.00 3.66
524 6100 2.665649 TTCGGCGATGTACATTCAGT 57.334 45.000 11.76 0.00 0.00 3.41
525 6101 4.271049 AGATTTTCGGCGATGTACATTCAG 59.729 41.667 11.76 6.21 0.00 3.02
526 6102 4.188462 AGATTTTCGGCGATGTACATTCA 58.812 39.130 11.76 0.00 0.00 2.57
527 6103 4.795970 AGATTTTCGGCGATGTACATTC 57.204 40.909 11.76 5.23 0.00 2.67
528 6104 4.634004 TCAAGATTTTCGGCGATGTACATT 59.366 37.500 11.76 0.00 0.00 2.71
529 6105 4.188462 TCAAGATTTTCGGCGATGTACAT 58.812 39.130 11.76 8.43 0.00 2.29
530 6106 3.591023 TCAAGATTTTCGGCGATGTACA 58.409 40.909 11.76 0.00 0.00 2.90
531 6107 4.593597 TTCAAGATTTTCGGCGATGTAC 57.406 40.909 11.76 3.41 0.00 2.90
532 6108 5.811399 ATTTCAAGATTTTCGGCGATGTA 57.189 34.783 11.76 0.00 0.00 2.29
533 6109 4.701956 ATTTCAAGATTTTCGGCGATGT 57.298 36.364 11.76 0.00 0.00 3.06
534 6110 7.096477 GGATTTATTTCAAGATTTTCGGCGATG 60.096 37.037 11.76 4.79 0.00 3.84
535 6111 6.918022 GGATTTATTTCAAGATTTTCGGCGAT 59.082 34.615 11.76 0.00 0.00 4.58
536 6112 6.127869 TGGATTTATTTCAAGATTTTCGGCGA 60.128 34.615 4.99 4.99 0.00 5.54
537 6113 6.033341 TGGATTTATTTCAAGATTTTCGGCG 58.967 36.000 0.00 0.00 0.00 6.46
538 6114 7.257722 TCTGGATTTATTTCAAGATTTTCGGC 58.742 34.615 0.00 0.00 0.00 5.54
539 6115 9.638239 TTTCTGGATTTATTTCAAGATTTTCGG 57.362 29.630 0.00 0.00 0.00 4.30
554 6130 9.554395 TGATGCTCGTATTTATTTCTGGATTTA 57.446 29.630 0.00 0.00 0.00 1.40
555 6131 8.450578 TGATGCTCGTATTTATTTCTGGATTT 57.549 30.769 0.00 0.00 0.00 2.17
556 6132 7.173907 CCTGATGCTCGTATTTATTTCTGGATT 59.826 37.037 0.00 0.00 0.00 3.01
557 6133 6.652481 CCTGATGCTCGTATTTATTTCTGGAT 59.348 38.462 0.00 0.00 0.00 3.41
558 6134 5.991606 CCTGATGCTCGTATTTATTTCTGGA 59.008 40.000 0.00 0.00 0.00 3.86
559 6135 5.991606 TCCTGATGCTCGTATTTATTTCTGG 59.008 40.000 0.00 0.00 0.00 3.86
560 6136 7.664082 ATCCTGATGCTCGTATTTATTTCTG 57.336 36.000 0.00 0.00 0.00 3.02
561 6137 8.682936 AAATCCTGATGCTCGTATTTATTTCT 57.317 30.769 0.00 0.00 0.00 2.52
565 6141 8.784043 GGTTTAAATCCTGATGCTCGTATTTAT 58.216 33.333 0.00 0.00 0.00 1.40
566 6142 7.990886 AGGTTTAAATCCTGATGCTCGTATTTA 59.009 33.333 8.10 0.00 33.62 1.40
567 6143 6.828785 AGGTTTAAATCCTGATGCTCGTATTT 59.171 34.615 8.10 0.00 33.62 1.40
568 6144 6.357367 AGGTTTAAATCCTGATGCTCGTATT 58.643 36.000 8.10 0.00 33.62 1.89
569 6145 5.930135 AGGTTTAAATCCTGATGCTCGTAT 58.070 37.500 8.10 0.00 33.62 3.06
570 6146 5.353394 AGGTTTAAATCCTGATGCTCGTA 57.647 39.130 8.10 0.00 33.62 3.43
571 6147 4.222124 AGGTTTAAATCCTGATGCTCGT 57.778 40.909 8.10 0.00 33.62 4.18
580 6156 1.716503 AGCCCACCAGGTTTAAATCCT 59.283 47.619 0.00 0.00 38.26 3.24
581 6157 1.824852 CAGCCCACCAGGTTTAAATCC 59.175 52.381 0.00 0.00 38.26 3.01
582 6158 1.824852 CCAGCCCACCAGGTTTAAATC 59.175 52.381 0.00 0.00 38.26 2.17
583 6159 1.552254 CCCAGCCCACCAGGTTTAAAT 60.552 52.381 0.00 0.00 38.26 1.40
584 6160 0.178947 CCCAGCCCACCAGGTTTAAA 60.179 55.000 0.00 0.00 38.26 1.52
585 6161 1.462928 CCCAGCCCACCAGGTTTAA 59.537 57.895 0.00 0.00 38.26 1.52
586 6162 2.543797 CCCCAGCCCACCAGGTTTA 61.544 63.158 0.00 0.00 38.26 2.01
587 6163 3.914713 CCCCAGCCCACCAGGTTT 61.915 66.667 0.00 0.00 38.26 3.27
588 6164 2.798760 TATCCCCAGCCCACCAGGTT 62.799 60.000 0.00 0.00 38.26 3.50
589 6165 3.281975 TATCCCCAGCCCACCAGGT 62.282 63.158 0.00 0.00 38.26 4.00
590 6166 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
591 6167 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
592 6168 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
593 6169 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
594 6170 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
595 6171 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
596 6172 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
597 6173 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
598 6174 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
610 6186 2.030027 TGAATGGTCAGAGGGACTGT 57.970 50.000 0.00 0.00 46.16 3.55
611 6187 2.616510 GGTTGAATGGTCAGAGGGACTG 60.617 54.545 0.00 0.00 46.16 3.51
612 6188 1.630878 GGTTGAATGGTCAGAGGGACT 59.369 52.381 0.00 0.00 46.16 3.85
613 6189 1.351017 TGGTTGAATGGTCAGAGGGAC 59.649 52.381 0.00 0.00 46.20 4.46
614 6190 1.351017 GTGGTTGAATGGTCAGAGGGA 59.649 52.381 0.00 0.00 34.49 4.20
615 6191 1.073763 TGTGGTTGAATGGTCAGAGGG 59.926 52.381 0.00 0.00 34.49 4.30
616 6192 2.430465 CTGTGGTTGAATGGTCAGAGG 58.570 52.381 0.00 0.00 34.49 3.69
617 6193 2.224621 ACCTGTGGTTGAATGGTCAGAG 60.225 50.000 0.00 0.00 34.49 3.35
618 6194 1.774254 ACCTGTGGTTGAATGGTCAGA 59.226 47.619 0.00 0.00 34.49 3.27
619 6195 2.276732 ACCTGTGGTTGAATGGTCAG 57.723 50.000 0.00 0.00 34.49 3.51
620 6196 2.746279 AACCTGTGGTTGAATGGTCA 57.254 45.000 0.71 0.00 45.07 4.02
632 6208 1.298859 GCCTAGCGAACCAACCTGTG 61.299 60.000 0.00 0.00 0.00 3.66
633 6209 1.003718 GCCTAGCGAACCAACCTGT 60.004 57.895 0.00 0.00 0.00 4.00
634 6210 3.890674 GCCTAGCGAACCAACCTG 58.109 61.111 0.00 0.00 0.00 4.00
645 6221 4.464112 CTTACAAAAAGAACACGCCTAGC 58.536 43.478 0.00 0.00 0.00 3.42
646 6222 4.514066 ACCTTACAAAAAGAACACGCCTAG 59.486 41.667 0.00 0.00 0.00 3.02
647 6223 4.453751 ACCTTACAAAAAGAACACGCCTA 58.546 39.130 0.00 0.00 0.00 3.93
648 6224 3.284617 ACCTTACAAAAAGAACACGCCT 58.715 40.909 0.00 0.00 0.00 5.52
649 6225 3.703286 ACCTTACAAAAAGAACACGCC 57.297 42.857 0.00 0.00 0.00 5.68
650 6226 7.688478 AATAAACCTTACAAAAAGAACACGC 57.312 32.000 0.00 0.00 0.00 5.34
915 6499 4.361971 TCCGACGAGACCCTGCCT 62.362 66.667 0.00 0.00 0.00 4.75
987 6572 1.507141 CTTGCATCGCCGAATACCCC 61.507 60.000 0.00 0.00 0.00 4.95
1024 6610 0.672711 GGCGTACTGTCTGGGGTTTC 60.673 60.000 0.00 0.00 0.00 2.78
1069 6656 3.137728 TGGGACAGATCTACTACCGATCA 59.862 47.826 0.00 0.00 39.73 2.92
1094 6681 4.607235 GCGAACAAGAACAATTGAACGTAG 59.393 41.667 13.59 0.00 36.02 3.51
1097 6684 2.719046 GGCGAACAAGAACAATTGAACG 59.281 45.455 13.59 6.69 36.35 3.95
1099 6686 2.035321 GGGGCGAACAAGAACAATTGAA 59.965 45.455 13.59 0.00 34.20 2.69
1103 6690 0.112412 AGGGGGCGAACAAGAACAAT 59.888 50.000 0.00 0.00 0.00 2.71
1132 6719 1.784358 ACCCCGTCGAATGGATCTAA 58.216 50.000 6.53 0.00 0.00 2.10
1193 6780 1.138036 GCCCGGAATAAACGTTGCC 59.862 57.895 0.73 0.36 0.00 4.52
1207 6794 4.341502 CCCACAAAACTGCGCCCG 62.342 66.667 4.18 0.00 0.00 6.13
1238 6825 1.280421 CAAGGGCAAGGCTACTCTTCT 59.720 52.381 0.00 0.00 0.00 2.85
1239 6826 1.279271 TCAAGGGCAAGGCTACTCTTC 59.721 52.381 0.00 0.00 0.00 2.87
1240 6827 1.362224 TCAAGGGCAAGGCTACTCTT 58.638 50.000 0.00 0.00 0.00 2.85
1271 6858 4.943705 TCTATGAACATTTCCTGGCAAGTC 59.056 41.667 0.00 0.00 0.00 3.01
1272 6859 4.922206 TCTATGAACATTTCCTGGCAAGT 58.078 39.130 0.00 0.00 0.00 3.16
1286 6910 8.521860 CAGTTCGTTTACGTTATCTCTATGAAC 58.478 37.037 0.00 0.00 40.80 3.18
1316 6940 6.985117 ACAATTCACAAGCAAACTGACATAT 58.015 32.000 0.00 0.00 0.00 1.78
1353 6977 0.322648 TGGTGACTGATGAGTGCAGG 59.677 55.000 0.00 0.00 37.69 4.85
1357 6981 3.323751 TGACATGGTGACTGATGAGTG 57.676 47.619 0.00 0.00 30.16 3.51
1404 7032 1.135721 GAGCCCTTTGGATTGCACATC 59.864 52.381 0.00 0.00 0.00 3.06
1458 7092 2.938451 GTCCAATGATCGCATCACTTCA 59.062 45.455 1.65 0.00 43.01 3.02
1467 7101 0.931005 GAAGGTCGTCCAATGATCGC 59.069 55.000 0.51 0.00 35.89 4.58
1498 7132 1.003116 CTTGCAATCTATGTCGCCAGC 60.003 52.381 0.00 0.00 0.00 4.85
1545 7179 4.240096 CCTGAAATCCAAATCTGTGCAAC 58.760 43.478 0.00 0.00 37.35 4.17
1546 7180 3.258872 CCCTGAAATCCAAATCTGTGCAA 59.741 43.478 0.00 0.00 0.00 4.08
1563 7197 0.539986 GCCGACCAGTATTTCCCTGA 59.460 55.000 0.00 0.00 31.38 3.86
1628 7262 4.693566 CGCTCAGGTAGTCAAAATTGGTAA 59.306 41.667 0.00 0.00 0.00 2.85
1634 7268 1.679032 GGGCGCTCAGGTAGTCAAAAT 60.679 52.381 7.64 0.00 0.00 1.82
1674 7308 0.381801 AAGTGCTCAGTGTTTTGGCG 59.618 50.000 0.00 0.00 0.00 5.69
1708 7342 4.384056 TCTCTCTTGGAGAAAACAAGCTG 58.616 43.478 0.00 0.00 46.85 4.24
1751 7385 2.418368 AGACAATTGGCAGCCGATAA 57.582 45.000 15.24 0.00 0.00 1.75
1752 7386 2.418368 AAGACAATTGGCAGCCGATA 57.582 45.000 15.24 0.00 0.00 2.92
1897 7579 6.294176 CCAAGTATAGCAACAAAGCAAGAACT 60.294 38.462 0.00 0.00 36.85 3.01
1901 7583 5.048782 TGACCAAGTATAGCAACAAAGCAAG 60.049 40.000 0.00 0.00 36.85 4.01
1903 7585 4.393834 TGACCAAGTATAGCAACAAAGCA 58.606 39.130 0.00 0.00 36.85 3.91
2082 7766 2.186826 CCGCGAATGGATTGGGACC 61.187 63.158 8.23 0.00 0.00 4.46
2089 7773 2.032981 GGAATTGCCGCGAATGGAT 58.967 52.632 8.23 0.00 0.00 3.41
2099 7783 2.700773 GCACTGGGACGGAATTGCC 61.701 63.158 0.00 0.00 38.67 4.52
2200 7890 2.432146 TCCTAGATACAAGCACAGCAGG 59.568 50.000 0.00 0.00 0.00 4.85
2217 7909 4.329392 TGAATACGTCGGCAGATATCCTA 58.671 43.478 0.00 0.00 0.00 2.94
2341 8033 6.867519 TGTGATCTCCATTCAAACCTAGTA 57.132 37.500 0.00 0.00 0.00 1.82
2373 8065 7.414222 AGTGATTTTGCAGAATATGGTCAAT 57.586 32.000 1.88 0.00 0.00 2.57
2507 8201 1.576356 CGGGCAGATAAAGAGTGAGC 58.424 55.000 0.00 0.00 0.00 4.26
2513 8207 0.387929 CGGTAGCGGGCAGATAAAGA 59.612 55.000 6.39 0.00 0.00 2.52
2532 8226 2.099263 TGTAGTATGCTTCGTCCTCAGC 59.901 50.000 0.00 0.00 36.49 4.26
2875 8587 6.224584 ACTAAGCTACCAGAGAACTGAAAAC 58.775 40.000 0.00 0.00 46.03 2.43
2882 8594 6.563222 ATCGATACTAAGCTACCAGAGAAC 57.437 41.667 0.00 0.00 0.00 3.01
3087 8808 6.828273 AGGTGTGTCAGCTATTATATGCAAAA 59.172 34.615 0.00 0.00 40.59 2.44
3130 8860 8.641541 TGTACTGATCATCTGCACAAAGATATA 58.358 33.333 0.00 0.00 35.09 0.86
3139 8871 3.251479 TGGTGTACTGATCATCTGCAC 57.749 47.619 11.23 11.23 0.00 4.57
3187 8920 9.547753 TCCAATTAGAGAAATATGCAAGTACTC 57.452 33.333 0.00 0.00 0.00 2.59
3343 9079 4.822685 AGATTCTCACATCAGCAGTTCT 57.177 40.909 0.00 0.00 0.00 3.01
3394 9130 2.414994 AACTGACTCATGCTCCATGG 57.585 50.000 4.97 4.97 41.66 3.66
3417 9153 1.699656 CTCAGTTGCGAGGCATTCCG 61.700 60.000 0.00 0.00 38.76 4.30
3761 9505 3.254060 CTCCACCACTTCTAACATCACG 58.746 50.000 0.00 0.00 0.00 4.35
3776 9520 2.270986 CCAACTGCAAGGCTCCACC 61.271 63.158 0.00 0.00 39.30 4.61
3853 9597 5.220586 CGCATCGTAGACAATACAATTTGGT 60.221 40.000 0.78 0.00 42.51 3.67
3889 9633 7.994911 ACTATCATCAAGCAATTCTGATGGTTA 59.005 33.333 16.25 10.53 35.37 2.85
3954 9699 6.898041 TGATTGAACATTAACGAACTTCTGG 58.102 36.000 0.00 0.00 0.00 3.86
4002 9747 2.278206 CGACCTCATCCGTCTGCG 60.278 66.667 0.00 0.00 37.95 5.18
4009 9754 0.837272 TCATTTCCCCGACCTCATCC 59.163 55.000 0.00 0.00 0.00 3.51
4049 9794 6.073602 GGAAATGGTGAAGCAACAAAATCTTC 60.074 38.462 0.00 0.00 33.61 2.87
4066 9811 4.384647 GCCTCTAATCTGTCTGGAAATGGT 60.385 45.833 0.00 0.00 0.00 3.55
4117 9862 4.679905 CGGAGGGAGTATAATATTTCCGGC 60.680 50.000 11.43 1.38 41.80 6.13
4120 9865 8.302515 TGATACGGAGGGAGTATAATATTTCC 57.697 38.462 0.00 0.00 35.19 3.13
4186 9931 8.787818 AGTATTCCCTCCATTCCAAATTAAGTA 58.212 33.333 0.00 0.00 0.00 2.24
4192 9937 8.927411 CAAATTAGTATTCCCTCCATTCCAAAT 58.073 33.333 0.00 0.00 0.00 2.32
4200 9945 5.450818 AGCACAAATTAGTATTCCCTCCA 57.549 39.130 0.00 0.00 0.00 3.86
4230 9975 0.037877 AGGCAGCTGACAAATGAGCT 59.962 50.000 24.55 0.00 46.73 4.09
4231 9976 0.886563 AAGGCAGCTGACAAATGAGC 59.113 50.000 24.55 0.00 35.28 4.26
4232 9977 2.555325 TCAAAGGCAGCTGACAAATGAG 59.445 45.455 24.55 5.20 0.00 2.90
4233 9978 2.585330 TCAAAGGCAGCTGACAAATGA 58.415 42.857 24.55 19.20 0.00 2.57
4263 10012 3.572604 TCGATCATGCATGCACAAAAA 57.427 38.095 25.37 7.15 0.00 1.94
4302 10051 4.202010 GCTTTGCTGTTCTCAAACCACTAA 60.202 41.667 0.00 0.00 34.28 2.24
4347 10096 6.043243 TCCACAGAAGGAAGAAATACAACTCT 59.957 38.462 0.00 0.00 33.93 3.24
4367 10117 0.401356 TCTGCAGCAGGATTTCCACA 59.599 50.000 22.62 0.00 38.89 4.17
4448 10198 8.840200 TTACCCAGAGTATCATCTAAACTCTT 57.160 34.615 1.59 0.00 45.94 2.85
4458 10208 8.368668 GCTGTAAACTATTACCCAGAGTATCAT 58.631 37.037 0.00 0.00 40.61 2.45
4531 10438 1.876156 GCAACTCTCTTTGACTGTGGG 59.124 52.381 0.00 0.00 0.00 4.61
4560 10467 2.497273 GTCCACCTTTAAGCATGGCATT 59.503 45.455 0.00 0.00 31.87 3.56
4621 10854 6.264088 ACTGAATAAAGGTCGATCGTTAGAC 58.736 40.000 15.94 5.52 36.70 2.59
4624 10857 6.094464 TCTGACTGAATAAAGGTCGATCGTTA 59.906 38.462 15.94 6.53 33.21 3.18
4632 10865 8.553459 TTCTTTGATCTGACTGAATAAAGGTC 57.447 34.615 15.32 0.00 34.88 3.85
4684 10917 9.976511 CGGATGTACTTTTGGTTATATTAGAGA 57.023 33.333 0.00 0.00 0.00 3.10
4685 10918 9.204570 CCGGATGTACTTTTGGTTATATTAGAG 57.795 37.037 0.00 0.00 0.00 2.43
4710 12252 1.000955 TGCTGAGACTCGAAGGTTTCC 59.999 52.381 0.00 0.00 0.00 3.13
4714 12256 2.354203 GGAAATGCTGAGACTCGAAGGT 60.354 50.000 0.00 0.00 0.00 3.50
4730 12272 2.955660 TCGCCAGAAGTTTTGTGGAAAT 59.044 40.909 8.96 0.00 46.44 2.17
4791 12333 3.877508 AGAGTTTGTTGAAGTTCGGAAGG 59.122 43.478 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.